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fix bioyond station and registry

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This commit is contained in:
Junhan Chang
2025-09-26 08:12:41 +08:00
parent a632fd495e
commit 196e0f7e2b
6 changed files with 187 additions and 527 deletions
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67
test/experiments/reaction_station_bioyond_test.json Normal file
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@@ -0,0 +1,67 @@
{
"nodes": [
{
"id": "reaction_station_bioyond",
"name": "reaction_station_bioyond",
"children": [
],
"parent": null,
"type": "device",
"class": "workstation.bioyond",
"config": {
"bioyond_config": {
"api_key": "DE9BDDA0",
"api_host": "http://192.168.1.200:44388",
"workflow_mappings": {
"reactor_taken_out": "3a16081e-4788-ca37-eff4-ceed8d7019d1",
"reactor_taken_in": "3a160df6-76b3-0957-9eb0-cb496d5721c6",
"Solid_feeding_vials": "3a160877-87e7-7699-7bc6-ec72b05eb5e6",
"Liquid_feeding_vials(non-titration)": "3a167d99-6158-c6f0-15b5-eb030f7d8e47",
"Liquid_feeding_solvents": "3a160824-0665-01ed-285a-51ef817a9046",
"Liquid_feeding(titration)": "3a160824-0665-01ed-285a-51ef817a9046",
"Liquid_feeding_beaker": "3a16087e-124f-8ddb-8ec1-c2dff09ca784",
"Drip_back": "3a162cf9-6aac-565a-ddd7-682ba1796a4a"
}
},
"deck": {
"_resource_child_name": "Bioyond_Deck",
"_resource_type": "unilabos.resources.bioyond.decks:BIOYOND_PolymerReactionStation_Deck"
},
"protocol_type": []
},
"data": {},
"children": [
"Bioyond_Deck"
]
},
{
"id": "Bioyond_Deck",
"name": "Bioyond_Deck",
"sample_id": null,
"children": [
],
"parent": "reaction_station_bioyond",
"type": "deck",
"class": "OTDeck",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
"type": "OTDeck",
"size_x": 624.3,
"size_y": 565.2,
"size_z": 900,
"with_trash": false,
"rotation": {
"x": 0,
"y": 0,
"z": 0,
"type": "Rotation"
}
},
"data": {}
}
]
}

2
unilabos/devices/workstation/bioyond_studio/bioyond_rpc.py
View File

@@ -8,7 +8,7 @@ from datetime import datetime, timezone
from unilabos.device_comms.rpc import BaseRequest
from typing import Optional, List, Dict, Any
import json
from config import WORKFLOW_TO_SECTION_MAP, WORKFLOW_STEP_IDS, LOCATION_MAPPING
from unilabos.devices.workstation.bioyond_studio.config import WORKFLOW_TO_SECTION_MAP, WORKFLOW_STEP_IDS, LOCATION_MAPPING
class SimpleLogger:

26
unilabos/devices/workstation/bioyond_studio/station.py
View File

@@ -12,7 +12,7 @@ from unilabos.devices.workstation.bioyond_studio.bioyond_rpc import BioyondV1RPC
from unilabos.utils.log import logger
from unilabos.resources.graphio import resource_bioyond_to_plr
from .config import API_CONFIG, WORKFLOW_MAPPINGS
from unilabos.devices.workstation.bioyond_studio.config import API_CONFIG, WORKFLOW_MAPPINGS
class BioyondResourceSynchronizer(ResourceSynchronizer):
@@ -101,7 +101,7 @@ class BioyondWorkstation(WorkstationBase):
def __init__(
self,
bioyond_config: Optional[Dict[str, Any]] = None,
deck: Optional[str, Any] = None,
deck: Optional[Any] = None,
*args,
**kwargs,
):
@@ -240,28 +240,6 @@ class BioyondWorkstation(WorkstationBase):
"message": str(e)
}
def get_bioyond_status(self) -> Dict[str, Any]:
"""获取Bioyond系统状态"""
try:
material_manager = self.material_management
return {
"bioyond_connected": material_manager.bioyond_api_client is not None,
"sync_interval": material_manager.sync_interval,
"total_resources": len(material_manager.plr_resources),
"deck_size": {
"x": material_manager.plr_deck.size_x,
"y": material_manager.plr_deck.size_y,
"z": material_manager.plr_deck.size_z
},
"bioyond_config": self.bioyond_config
}
except Exception as e:
logger.error(f"获取Bioyond状态失败: {e}")
return {
"error": str(e)
}
def load_bioyond_data_from_file(self, file_path: str) -> bool:
"""从文件加载Bioyond数据（用于测试）"""
try:

481
unilabos/registry/devices/reaction_station_bioyong.yaml
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@@ -1,481 +0,0 @@
reaction_station_bioyong:
category:
- reaction_station_bioyong
class:
action_value_mappings:
drip_back:
feedback: {}
goal:
assign_material_name: assign_material_name
time: time
torque_variation: torque_variation
volume: volume
goal_default:
assign_material_name: ''
time: ''
torque_variation: ''
volume: ''
handles: {}
result:
return_info: return_info
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: ReactionStationDripBack_Feedback
type: object
goal:
properties:
assign_material_name:
type: string
time:
type: string
torque_variation:
type: string
volume:
type: string
required:
- volume
- assign_material_name
- time
- torque_variation
title: ReactionStationDripBack_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: ReactionStationDripBack_Result
type: object
required:
- goal
title: ReactionStationDripBack
type: object
type: ReactionStationDripBack
liquid_feeding_beaker:
feedback: {}
goal:
assign_material_name: assign_material_name
time: time
torque_variation: torque_variation
volume: volume
goal_default:
assign_material_name: ''
time: ''
titration_type: ''
torque_variation: ''
volume: ''
handles: {}
result:
return_info: return_info
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: ReactionStationLiquidFeed_Feedback
type: object
goal:
properties:
assign_material_name:
type: string
time:
type: string
titration_type:
type: string
torque_variation:
type: string
volume:
type: string
required:
- titration_type
- volume
- assign_material_name
- time
- torque_variation
title: ReactionStationLiquidFeed_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: ReactionStationLiquidFeed_Result
type: object
required:
- goal
title: ReactionStationLiquidFeed
type: object
type: ReactionStationLiquidFeed
liquid_feeding_solvents:
feedback: {}
goal:
assign_material_name: assign_material_name
time: time
torque_variation: torque_variation
volume: volume
goal_default:
assign_material_name: ''
time: ''
titration_type: ''
torque_variation: ''
volume: ''
handles: {}
result:
return_info: return_info
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: ReactionStationLiquidFeed_Feedback
type: object
goal:
properties:
assign_material_name:
type: string
time:
type: string
titration_type:
type: string
torque_variation:
type: string
volume:
type: string
required:
- titration_type
- volume
- assign_material_name
- time
- torque_variation
title: ReactionStationLiquidFeed_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: ReactionStationLiquidFeed_Result
type: object
required:
- goal
title: ReactionStationLiquidFeed
type: object
type: ReactionStationLiquidFeed
liquid_feeding_titration:
feedback: {}
goal:
assign_material_name: assign_material_name
time: time
torque_variation: torque_variation
volume: volume
goal_default:
assign_material_name: ''
time: ''
titration_type: ''
torque_variation: ''
volume: ''
handles: {}
result:
return_info: return_info
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: ReactionStationLiquidFeed_Feedback
type: object
goal:
properties:
assign_material_name:
type: string
time:
type: string
titration_type:
type: string
torque_variation:
type: string
volume:
type: string
required:
- titration_type
- volume
- assign_material_name
- time
- torque_variation
title: ReactionStationLiquidFeed_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: ReactionStationLiquidFeed_Result
type: object
required:
- goal
title: ReactionStationLiquidFeed
type: object
type: ReactionStationLiquidFeed
liquid_feeding_vials_non_titration:
feedback: {}
goal:
assign_material_name: assign_material_name
time: time
torque_variation: torque_variation
volume: volume
goal_default:
assign_material_name: ''
time: ''
titration_type: ''
torque_variation: ''
volume: ''
handles: {}
result:
return_info: return_info
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: ReactionStationLiquidFeed_Feedback
type: object
goal:
properties:
assign_material_name:
type: string
time:
type: string
titration_type:
type: string
torque_variation:
type: string
volume:
type: string
required:
- titration_type
- volume
- assign_material_name
- time
- torque_variation
title: ReactionStationLiquidFeed_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: ReactionStationLiquidFeed_Result
type: object
required:
- goal
title: ReactionStationLiquidFeed
type: object
type: ReactionStationLiquidFeed
process_and_execute_workflow:
feedback: {}
goal:
task_name: task_name
workflow_name: workflow_name
goal_default:
task_name: ''
workflow_name: ''
handles: {}
result:
return_info: return_info
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: ReactionStationProExecu_Feedback
type: object
goal:
properties:
task_name:
type: string
workflow_name:
type: string
required:
- workflow_name
- task_name
title: ReactionStationProExecu_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: ReactionStationProExecu_Result
type: object
required:
- goal
title: ReactionStationProExecu
type: object
type: ReactionStationProExecu
reactor_taken_in:
feedback: {}
goal:
assign_material_name: assign_material_name
cutoff: cutoff
temperature: temperature
goal_default:
assign_material_name: ''
cutoff: ''
temperature: ''
handles: {}
result:
return_info: return_info
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: ReactionStationReaTackIn_Feedback
type: object
goal:
properties:
assign_material_name:
type: string
cutoff:
type: string
temperature:
type: string
required:
- cutoff
- temperature
- assign_material_name
title: ReactionStationReaTackIn_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: ReactionStationReaTackIn_Result
type: object
required:
- goal
title: ReactionStationReaTackIn
type: object
type: ReactionStationReaTackIn
reactor_taken_out:
feedback: {}
goal: {}
goal_default:
command: ''
handles: {}
result: {}
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
solid_feeding_vials:
feedback: {}
goal:
assign_material_name: assign_material_name
material_id: material_id
time: time
torque_variation: torque_variation
goal_default:
assign_material_name: ''
material_id: ''
time: ''
torque_variation: ''
handles: {}
result:
return_info: return_info
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: ReactionStationSolidFeedVial_Feedback
type: object
goal:
properties:
assign_material_name:
type: string
material_id:
type: string
time:
type: string
torque_variation:
type: string
required:
- assign_material_name
- material_id
- time
- torque_variation
title: ReactionStationSolidFeedVial_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: ReactionStationSolidFeedVial_Result
type: object
required:
- goal
title: ReactionStationSolidFeedVial
type: object
type: ReactionStationSolidFeedVial
module: unilabos.devices.reaction_station.reaction_station_bioyong:BioyongV1RPC
status_types: {}
type: python
config_info: []
description: reaction_station_bioyong Device
handles: []
icon: ''
init_param_schema: {}
version: 1.0.0

98
unilabos/registry/devices/work_station.yaml
View File

@@ -6044,3 +6044,101 @@ workstation:
required: []
type: object
version: 1.0.0
workstation.bioyond:
category:
- work_station
class:
action_value_mappings:
auto-execute_bioyond_sync_workflow:
feedback: {}
goal: {}
goal_default:
parameters: null
handles: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
parameters:
type: object
required:
- parameters
type: object
result: {}
required:
- goal
title: execute_bioyond_sync_workflow参数
type: object
type: UniLabJsonCommandAsync
auto-execute_bioyond_update_workflow:
feedback: {}
goal: {}
goal_default:
parameters: null
handles: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
parameters:
type: object
required:
- parameters
type: object
result: {}
required:
- goal
title: execute_bioyond_update_workflow参数
type: object
type: UniLabJsonCommandAsync
auto-load_bioyond_data_from_file:
feedback: {}
goal: {}
goal_default:
file_path: null
handles: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
file_path:
type: string
required:
- file_path
type: object
result: {}
required:
- goal
title: load_bioyond_data_from_file参数
type: object
type: UniLabJsonCommand
module: unilabos.devices.workstation.bioyond_studio.station:BioyondWorkstation
status_types: {}
type: python
config_info: []
description: ''
handles: []
icon: 反应站.webp
init_param_schema:
config:
properties:
bioyond_config:
type: string
deck:
type: string
required: []
type: object
data:
properties: {}
required: []
type: object
version: 1.0.0

40
unilabos/registry/resources/bioyond/bottle_carriers.yaml
View File

@@ -1,38 +1,36 @@
BIOYOND_PolymerStation_6VialCarrier:
category:
- bottle_carriers
class:
module: unilabos.resources.bioyond.bottle_carriers:BIOYOND_PolymerStation_6VialCarrier
type: pylabrobot
description: BIOYOND_PolymerStation_6VialCarrier
handles: [ ]
icon: ''
init_param_schema: { }
registry_type: resource
version: 1.0.0
BIOYOND_PolymerStation_1BottleCarrier:
category:
- bottle_carriers
- bottle_carriers
class:
module: unilabos.resources.bioyond.bottle_carriers:BIOYOND_PolymerStation_1BottleCarrier
type: pylabrobot
description: BIOYOND_PolymerStation_1BottleCarrier
handles: [ ]
handles: []
icon: ''
init_param_schema: { }
init_param_schema: {}
registry_type: resource
version: 1.0.0
BIOYOND_PolymerStation_1FlaskCarrier:
category:
- bottle_carriers
- bottle_carriers
class:
module: unilabos.resources.bioyond.bottle_carriers:BIOYOND_PolymerStation_1FlaskCarrier
type: pylabrobot
description: BIOYOND_PolymerStation_1FlaskCarrier
handles: [ ]
handles: []
icon: ''
init_param_schema: { }
init_param_schema: {}
registry_type: resource
version: 1.0.0
version: 1.0.0
BIOYOND_PolymerStation_6VialCarrier:
category:
- bottle_carriers
class:
module: unilabos.resources.bioyond.bottle_carriers:BIOYOND_PolymerStation_6VialCarrier
type: pylabrobot
description: BIOYOND_PolymerStation_6VialCarrier
handles: []
icon: ''
init_param_schema: {}
registry_type: resource
version: 1.0.0