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adapt to new samples sys

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Xuwznln
2026-02-04 18:49:08 +08:00
parent 84a8223173
commit 26271bcab8
6 changed files with 202 additions and 88 deletions
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21
unilabos/workflow/common.py
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@@ -60,7 +60,11 @@
==================== 连接关系图 ====================
控制流 (ready 端口串联):
create_resource_1 -> create_resource_2 -> ... -> set_liquid_1 -> set_liquid_2 -> ... -> transfer_liquid_1 -> transfer_liquid_2 -> ...
- create_resource 之间: 无 ready 连接
- set_liquid_from_plate 之间: 无 ready 连接
- create_resource 与 set_liquid_from_plate 之间: 无 ready 连接
- transfer_liquid 之间: 通过 ready 端口串联
transfer_liquid_1 -> transfer_liquid_2 -> transfer_liquid_3 -> ...
物料流:
[create_resource] --labware--> [set_liquid_from_plate] --output_wells--> [transfer_liquid] --sources_out/targets_out--> [下一个 transfer_liquid]
@@ -402,7 +406,6 @@ def build_protocol_graph(
# 为每个唯一的 slot 创建 create_resource 节点
res_index = 0
last_create_resource_id = None
for slot, info in slots_info.items():
node_id = str(uuid.uuid4())
res_id = info["res_id"]
@@ -431,10 +434,7 @@ def build_protocol_graph(
)
slot_to_create_resource[slot] = node_id
# create_resource 之间通过 ready 串联
if last_create_resource_id is not None:
G.add_edge(last_create_resource_id, node_id, source_port="ready", target_port="ready")
last_create_resource_id = node_id
# create_resource 之间不需要 ready 连接
# ==================== 第二步：为每个 reagent 创建 set_liquid_from_plate 节点 ====================
# 创建 Group 节点，包含所有 set_liquid_from_plate 节点
@@ -453,7 +453,6 @@ def build_protocol_graph(
)
set_liquid_index = 0
last_set_liquid_id = last_create_resource_id # set_liquid_from_plate 连接在 create_resource 之后
for labware_id, item in labware_info.items():
# 跳过 Tip/Rack 类型
@@ -494,10 +493,7 @@ def build_protocol_graph(
},
)
# ready 连接：上一个节点 -> set_liquid_from_plate
if last_set_liquid_id is not None:
G.add_edge(last_set_liquid_id, node_id, source_port="ready", target_port="ready")
last_set_liquid_id = node_id
# set_liquid_from_plate 之间不需要 ready 连接
# 物料流：create_resource 的 labware -> set_liquid_from_plate 的 input_plate
create_res_node_id = slot_to_create_resource.get(slot)
@@ -507,7 +503,8 @@ def build_protocol_graph(
# set_liquid_from_plate 的输出 output_wells 用于连接 transfer_liquid
resource_last_writer[labware_id] = f"{node_id}:output_wells"
last_control_node_id = last_set_liquid_id
# transfer_liquid 之间通过 ready 串联，从 None 开始
last_control_node_id = None
# 端口名称映射：JSON 字段名 -> 实际 handle key
INPUT_PORT_MAPPING = {