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test_transfer_liquid
This commit is contained in:
505
test/devices/liquid_handling/test_transfer_liquid.py
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505
test/devices/liquid_handling/test_transfer_liquid.py
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import asyncio
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from dataclasses import dataclass
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from typing import Any, Iterable, List, Optional, Sequence, Tuple
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import pytest
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from unilabos.devices.liquid_handling.liquid_handler_abstract import LiquidHandlerAbstract
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@dataclass(frozen=True)
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class DummyContainer:
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name: str
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def __repr__(self) -> str: # pragma: no cover
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return f"DummyContainer({self.name})"
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@dataclass(frozen=True)
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class DummyTipSpot:
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name: str
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def __repr__(self) -> str: # pragma: no cover
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return f"DummyTipSpot({self.name})"
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def make_tip_iter(n: int = 256) -> Iterable[List[DummyTipSpot]]:
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"""Yield lists so code can safely call `tip.extend(next(self.current_tip))`."""
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for i in range(n):
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yield [DummyTipSpot(f"tip_{i}")]
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class FakeLiquidHandler(LiquidHandlerAbstract):
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"""不初始化真实 backend/deck;仅用来记录 transfer_liquid 内部调用序列。"""
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def __init__(self, channel_num: int = 8):
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# 不调用 super().__init__,避免真实硬件/后端依赖
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self.channel_num = channel_num
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self.support_touch_tip = True
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self.current_tip = iter(make_tip_iter())
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self.calls: List[Tuple[str, Any]] = []
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async def pick_up_tips(self, tip_spots, use_channels=None, offsets=None, **backend_kwargs):
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self.calls.append(("pick_up_tips", {"tips": list(tip_spots), "use_channels": use_channels}))
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async def aspirate(
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self,
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resources: Sequence[Any],
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vols: List[float],
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use_channels: Optional[List[int]] = None,
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flow_rates: Optional[List[Optional[float]]] = None,
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offsets: Any = None,
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liquid_height: Any = None,
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blow_out_air_volume: Any = None,
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spread: str = "wide",
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**backend_kwargs,
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):
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self.calls.append(
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(
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"aspirate",
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{
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"resources": list(resources),
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"vols": list(vols),
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"use_channels": list(use_channels) if use_channels is not None else None,
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"flow_rates": list(flow_rates) if flow_rates is not None else None,
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"offsets": list(offsets) if offsets is not None else None,
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"liquid_height": list(liquid_height) if liquid_height is not None else None,
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"blow_out_air_volume": list(blow_out_air_volume) if blow_out_air_volume is not None else None,
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},
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)
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)
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async def dispense(
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self,
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resources: Sequence[Any],
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vols: List[float],
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use_channels: Optional[List[int]] = None,
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flow_rates: Optional[List[Optional[float]]] = None,
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offsets: Any = None,
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liquid_height: Any = None,
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blow_out_air_volume: Any = None,
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spread: str = "wide",
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**backend_kwargs,
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):
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self.calls.append(
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(
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"dispense",
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{
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"resources": list(resources),
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"vols": list(vols),
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"use_channels": list(use_channels) if use_channels is not None else None,
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"flow_rates": list(flow_rates) if flow_rates is not None else None,
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"offsets": list(offsets) if offsets is not None else None,
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"liquid_height": list(liquid_height) if liquid_height is not None else None,
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"blow_out_air_volume": list(blow_out_air_volume) if blow_out_air_volume is not None else None,
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},
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)
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)
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async def discard_tips(self, use_channels=None, *args, **kwargs):
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# 有的分支是 discard_tips(use_channels=[0]),有的分支是 discard_tips([0..7])(位置参数)
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self.calls.append(("discard_tips", {"use_channels": list(use_channels) if use_channels is not None else None}))
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async def custom_delay(self, seconds=0, msg=None):
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self.calls.append(("custom_delay", {"seconds": seconds, "msg": msg}))
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async def touch_tip(self, targets):
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# 原实现会访问 targets.get_size_x() 等;测试里只记录调用
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self.calls.append(("touch_tip", {"targets": targets}))
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async def mix(self, targets, mix_time=None, mix_vol=None, height_to_bottom=None, offsets=None, mix_rate=None, none_keys=None):
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self.calls.append(
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(
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"mix",
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{
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"targets": targets,
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"mix_time": mix_time,
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"mix_vol": mix_vol,
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},
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)
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)
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def run(coro):
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return asyncio.run(coro)
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def test_one_to_one_single_channel_basic_calls():
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lh = FakeLiquidHandler(channel_num=1)
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lh.current_tip = iter(make_tip_iter(64))
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sources = [DummyContainer(f"S{i}") for i in range(3)]
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targets = [DummyContainer(f"T{i}") for i in range(3)]
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run(
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lh.transfer_liquid(
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sources=sources,
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targets=targets,
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tip_racks=[],
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use_channels=[0],
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asp_vols=[1, 2, 3],
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dis_vols=[4, 5, 6],
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mix_times=None, # 应该仍能执行(不 mix)
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)
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)
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assert [c[0] for c in lh.calls].count("pick_up_tips") == 3
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assert [c[0] for c in lh.calls].count("aspirate") == 3
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assert [c[0] for c in lh.calls].count("dispense") == 3
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assert [c[0] for c in lh.calls].count("discard_tips") == 3
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# 每次 aspirate/dispense 都是单孔列表
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aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
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assert aspirates[0]["resources"] == [sources[0]]
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assert aspirates[0]["vols"] == [1.0]
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dispenses = [payload for name, payload in lh.calls if name == "dispense"]
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assert dispenses[2]["resources"] == [targets[2]]
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assert dispenses[2]["vols"] == [6.0]
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def test_one_to_one_single_channel_before_stage_mixes_prior_to_aspirate():
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lh = FakeLiquidHandler(channel_num=1)
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lh.current_tip = iter(make_tip_iter(16))
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source = DummyContainer("S0")
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target = DummyContainer("T0")
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run(
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lh.transfer_liquid(
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sources=[source],
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targets=[target],
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tip_racks=[],
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use_channels=[0],
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asp_vols=[5],
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dis_vols=[5],
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mix_stage="before",
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mix_times=1,
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mix_vol=3,
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)
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)
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names = [name for name, _ in lh.calls]
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assert names.count("mix") == 1
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assert names.index("mix") < names.index("aspirate")
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def test_one_to_one_eight_channel_groups_by_8():
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lh = FakeLiquidHandler(channel_num=8)
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lh.current_tip = iter(make_tip_iter(256))
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sources = [DummyContainer(f"S{i}") for i in range(16)]
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targets = [DummyContainer(f"T{i}") for i in range(16)]
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asp_vols = list(range(1, 17))
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dis_vols = list(range(101, 117))
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run(
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lh.transfer_liquid(
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sources=sources,
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targets=targets,
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tip_racks=[],
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use_channels=list(range(8)),
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asp_vols=asp_vols,
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dis_vols=dis_vols,
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mix_times=0, # 触发逻辑但不 mix
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)
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)
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# 16 个任务 -> 2 组,每组 8 通道一起做
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assert [c[0] for c in lh.calls].count("pick_up_tips") == 2
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aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
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dispenses = [payload for name, payload in lh.calls if name == "dispense"]
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assert len(aspirates) == 2
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assert len(dispenses) == 2
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assert aspirates[0]["resources"] == sources[0:8]
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assert aspirates[0]["vols"] == [float(v) for v in asp_vols[0:8]]
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assert dispenses[1]["resources"] == targets[8:16]
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assert dispenses[1]["vols"] == [float(v) for v in dis_vols[8:16]]
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def test_one_to_one_eight_channel_requires_multiple_of_8_targets():
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lh = FakeLiquidHandler(channel_num=8)
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lh.current_tip = iter(make_tip_iter(64))
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sources = [DummyContainer(f"S{i}") for i in range(9)]
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targets = [DummyContainer(f"T{i}") for i in range(9)]
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with pytest.raises(ValueError, match="multiple of 8"):
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run(
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lh.transfer_liquid(
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sources=sources,
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targets=targets,
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tip_racks=[],
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use_channels=list(range(8)),
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asp_vols=[1] * 9,
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dis_vols=[1] * 9,
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mix_times=0,
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)
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)
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def test_one_to_one_eight_channel_parameter_lists_are_chunked_per_8():
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lh = FakeLiquidHandler(channel_num=8)
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lh.current_tip = iter(make_tip_iter(512))
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sources = [DummyContainer(f"S{i}") for i in range(16)]
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targets = [DummyContainer(f"T{i}") for i in range(16)]
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asp_vols = [i + 1 for i in range(16)]
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dis_vols = [200 + i for i in range(16)]
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asp_flow_rates = [0.1 * (i + 1) for i in range(16)]
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dis_flow_rates = [0.2 * (i + 1) for i in range(16)]
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offsets = [f"offset_{i}" for i in range(16)]
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liquid_heights = [i * 0.5 for i in range(16)]
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blow_out_air_volume = [i + 0.05 for i in range(16)]
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run(
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lh.transfer_liquid(
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sources=sources,
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targets=targets,
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tip_racks=[],
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use_channels=list(range(8)),
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asp_vols=asp_vols,
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dis_vols=dis_vols,
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asp_flow_rates=asp_flow_rates,
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dis_flow_rates=dis_flow_rates,
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offsets=offsets,
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liquid_height=liquid_heights,
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blow_out_air_volume=blow_out_air_volume,
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mix_times=0,
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)
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)
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aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
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dispenses = [payload for name, payload in lh.calls if name == "dispense"]
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assert len(aspirates) == len(dispenses) == 2
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for batch_idx in range(2):
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start = batch_idx * 8
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end = start + 8
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asp_call = aspirates[batch_idx]
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dis_call = dispenses[batch_idx]
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assert asp_call["resources"] == sources[start:end]
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assert asp_call["flow_rates"] == asp_flow_rates[start:end]
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assert asp_call["offsets"] == offsets[start:end]
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assert asp_call["liquid_height"] == liquid_heights[start:end]
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assert asp_call["blow_out_air_volume"] == blow_out_air_volume[start:end]
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assert dis_call["flow_rates"] == dis_flow_rates[start:end]
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assert dis_call["offsets"] == offsets[start:end]
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assert dis_call["liquid_height"] == liquid_heights[start:end]
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assert dis_call["blow_out_air_volume"] == blow_out_air_volume[start:end]
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def test_one_to_one_eight_channel_handles_32_tasks_four_batches():
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lh = FakeLiquidHandler(channel_num=8)
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lh.current_tip = iter(make_tip_iter(1024))
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sources = [DummyContainer(f"S{i}") for i in range(32)]
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targets = [DummyContainer(f"T{i}") for i in range(32)]
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asp_vols = [i + 1 for i in range(32)]
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dis_vols = [300 + i for i in range(32)]
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|
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run(
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|
lh.transfer_liquid(
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sources=sources,
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targets=targets,
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tip_racks=[],
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use_channels=list(range(8)),
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asp_vols=asp_vols,
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|
dis_vols=dis_vols,
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mix_times=0,
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|
)
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|
)
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|
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pick_calls = [name for name, _ in lh.calls if name == "pick_up_tips"]
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aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
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dispenses = [payload for name, payload in lh.calls if name == "dispense"]
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assert len(pick_calls) == 4
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assert len(aspirates) == len(dispenses) == 4
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assert aspirates[0]["resources"] == sources[0:8]
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assert aspirates[-1]["resources"] == sources[24:32]
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assert dispenses[0]["resources"] == targets[0:8]
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assert dispenses[-1]["resources"] == targets[24:32]
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|
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def test_one_to_many_single_channel_aspirates_total_when_asp_vol_too_small():
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lh = FakeLiquidHandler(channel_num=1)
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|
lh.current_tip = iter(make_tip_iter(64))
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|
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source = DummyContainer("SRC")
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targets = [DummyContainer(f"T{i}") for i in range(3)]
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dis_vols = [10, 20, 30] # sum=60
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|
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|
run(
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|
lh.transfer_liquid(
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|
sources=[source],
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|
targets=targets,
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tip_racks=[],
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use_channels=[0],
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asp_vols=10, # 小于 sum(dis_vols) -> 应吸 60
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|
dis_vols=dis_vols,
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mix_times=0,
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||||||
|
)
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|
)
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|
|
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|
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
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assert len(aspirates) == 1
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assert aspirates[0]["resources"] == [source]
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assert aspirates[0]["vols"] == [60.0]
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assert aspirates[0]["use_channels"] == [0]
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|
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
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|
assert [d["vols"][0] for d in dispenses] == [10.0, 20.0, 30.0]
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|
|
||||||
|
|
||||||
|
def test_one_to_many_eight_channel_basic():
|
||||||
|
lh = FakeLiquidHandler(channel_num=8)
|
||||||
|
lh.current_tip = iter(make_tip_iter(128))
|
||||||
|
|
||||||
|
source = DummyContainer("SRC")
|
||||||
|
targets = [DummyContainer(f"T{i}") for i in range(8)]
|
||||||
|
dis_vols = [i + 1 for i in range(8)]
|
||||||
|
|
||||||
|
run(
|
||||||
|
lh.transfer_liquid(
|
||||||
|
sources=[source],
|
||||||
|
targets=targets,
|
||||||
|
tip_racks=[],
|
||||||
|
use_channels=list(range(8)),
|
||||||
|
asp_vols=999, # one-to-many 8ch 会按 dis_vols 吸(每通道各自)
|
||||||
|
dis_vols=dis_vols,
|
||||||
|
mix_times=0,
|
||||||
|
)
|
||||||
|
)
|
||||||
|
|
||||||
|
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||||
|
assert aspirates[0]["resources"] == [source] * 8
|
||||||
|
assert aspirates[0]["vols"] == [float(v) for v in dis_vols]
|
||||||
|
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||||
|
assert dispenses[0]["resources"] == targets
|
||||||
|
assert dispenses[0]["vols"] == [float(v) for v in dis_vols]
|
||||||
|
|
||||||
|
|
||||||
|
def test_many_to_one_single_channel_standard_dispense_equals_asp_by_default():
|
||||||
|
lh = FakeLiquidHandler(channel_num=1)
|
||||||
|
lh.current_tip = iter(make_tip_iter(128))
|
||||||
|
|
||||||
|
sources = [DummyContainer(f"S{i}") for i in range(3)]
|
||||||
|
target = DummyContainer("T")
|
||||||
|
asp_vols = [5, 6, 7]
|
||||||
|
|
||||||
|
run(
|
||||||
|
lh.transfer_liquid(
|
||||||
|
sources=sources,
|
||||||
|
targets=[target],
|
||||||
|
tip_racks=[],
|
||||||
|
use_channels=[0],
|
||||||
|
asp_vols=asp_vols,
|
||||||
|
dis_vols=1, # many-to-one 允许标量;非比例模式下实际每次分液=对应 asp_vol
|
||||||
|
mix_times=0,
|
||||||
|
)
|
||||||
|
)
|
||||||
|
|
||||||
|
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||||
|
assert [d["vols"][0] for d in dispenses] == [float(v) for v in asp_vols]
|
||||||
|
assert all(d["resources"] == [target] for d in dispenses)
|
||||||
|
|
||||||
|
|
||||||
|
def test_many_to_one_single_channel_before_stage_mixes_target_once():
|
||||||
|
lh = FakeLiquidHandler(channel_num=1)
|
||||||
|
lh.current_tip = iter(make_tip_iter(128))
|
||||||
|
|
||||||
|
sources = [DummyContainer("S0"), DummyContainer("S1")]
|
||||||
|
target = DummyContainer("T")
|
||||||
|
|
||||||
|
run(
|
||||||
|
lh.transfer_liquid(
|
||||||
|
sources=sources,
|
||||||
|
targets=[target],
|
||||||
|
tip_racks=[],
|
||||||
|
use_channels=[0],
|
||||||
|
asp_vols=[5, 6],
|
||||||
|
dis_vols=1,
|
||||||
|
mix_stage="before",
|
||||||
|
mix_times=2,
|
||||||
|
mix_vol=4,
|
||||||
|
)
|
||||||
|
)
|
||||||
|
|
||||||
|
names = [name for name, _ in lh.calls]
|
||||||
|
assert names[0] == "mix"
|
||||||
|
assert names.count("mix") == 1
|
||||||
|
|
||||||
|
|
||||||
|
def test_many_to_one_single_channel_proportional_mixing_uses_dis_vols_per_source():
|
||||||
|
lh = FakeLiquidHandler(channel_num=1)
|
||||||
|
lh.current_tip = iter(make_tip_iter(128))
|
||||||
|
|
||||||
|
sources = [DummyContainer(f"S{i}") for i in range(3)]
|
||||||
|
target = DummyContainer("T")
|
||||||
|
asp_vols = [5, 6, 7]
|
||||||
|
dis_vols = [1, 2, 3]
|
||||||
|
|
||||||
|
run(
|
||||||
|
lh.transfer_liquid(
|
||||||
|
sources=sources,
|
||||||
|
targets=[target],
|
||||||
|
tip_racks=[],
|
||||||
|
use_channels=[0],
|
||||||
|
asp_vols=asp_vols,
|
||||||
|
dis_vols=dis_vols, # 比例模式
|
||||||
|
mix_times=0,
|
||||||
|
)
|
||||||
|
)
|
||||||
|
|
||||||
|
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||||
|
assert [d["vols"][0] for d in dispenses] == [float(v) for v in dis_vols]
|
||||||
|
|
||||||
|
|
||||||
|
def test_many_to_one_eight_channel_basic():
|
||||||
|
lh = FakeLiquidHandler(channel_num=8)
|
||||||
|
lh.current_tip = iter(make_tip_iter(256))
|
||||||
|
|
||||||
|
sources = [DummyContainer(f"S{i}") for i in range(8)]
|
||||||
|
target = DummyContainer("T")
|
||||||
|
asp_vols = [10 + i for i in range(8)]
|
||||||
|
|
||||||
|
run(
|
||||||
|
lh.transfer_liquid(
|
||||||
|
sources=sources,
|
||||||
|
targets=[target],
|
||||||
|
tip_racks=[],
|
||||||
|
use_channels=list(range(8)),
|
||||||
|
asp_vols=asp_vols,
|
||||||
|
dis_vols=999, # 非比例模式下每通道分液=对应 asp_vol
|
||||||
|
mix_times=0,
|
||||||
|
)
|
||||||
|
)
|
||||||
|
|
||||||
|
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||||
|
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||||
|
assert aspirates[0]["resources"] == sources
|
||||||
|
assert aspirates[0]["vols"] == [float(v) for v in asp_vols]
|
||||||
|
assert dispenses[0]["resources"] == [target] * 8
|
||||||
|
assert dispenses[0]["vols"] == [float(v) for v in asp_vols]
|
||||||
|
|
||||||
|
|
||||||
|
def test_transfer_liquid_mode_detection_unsupported_shape_raises():
|
||||||
|
lh = FakeLiquidHandler(channel_num=8)
|
||||||
|
lh.current_tip = iter(make_tip_iter(64))
|
||||||
|
|
||||||
|
sources = [DummyContainer("S0"), DummyContainer("S1")]
|
||||||
|
targets = [DummyContainer("T0"), DummyContainer("T1"), DummyContainer("T2")]
|
||||||
|
|
||||||
|
with pytest.raises(ValueError, match="Unsupported transfer mode"):
|
||||||
|
run(
|
||||||
|
lh.transfer_liquid(
|
||||||
|
sources=sources,
|
||||||
|
targets=targets,
|
||||||
|
tip_racks=[],
|
||||||
|
use_channels=[0],
|
||||||
|
asp_vols=[1, 1],
|
||||||
|
dis_vols=[1, 1, 1],
|
||||||
|
mix_times=0,
|
||||||
|
)
|
||||||
|
)
|
||||||
|
|
||||||
@@ -969,11 +969,19 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
One or more TipRacks providing fresh tips.
|
One or more TipRacks providing fresh tips.
|
||||||
is_96_well
|
is_96_well
|
||||||
Set *True* to use the 96‑channel head.
|
Set *True* to use the 96‑channel head.
|
||||||
|
mix_stage
|
||||||
|
When to mix the target wells relative to dispensing. Default "none" means
|
||||||
|
no mixing occurs even if mix_times is provided. Use "before", "after", or
|
||||||
|
"both" to mix at the corresponding stage(s).
|
||||||
|
mix_times
|
||||||
|
Number of mix cycles. If *None* (default) no mixing occurs regardless of
|
||||||
|
mix_stage.
|
||||||
"""
|
"""
|
||||||
|
|
||||||
# 确保 use_channels 有默认值
|
# 确保 use_channels 有默认值
|
||||||
if use_channels is None:
|
if use_channels is None:
|
||||||
use_channels = [0] if self.channel_num >= 1 else list(range(self.channel_num))
|
# 默认使用设备所有通道(例如 8 通道移液站默认就是 0-7)
|
||||||
|
use_channels = list(range(self.channel_num)) if self.channel_num > 0 else [0]
|
||||||
|
|
||||||
if is_96_well:
|
if is_96_well:
|
||||||
pass # This mode is not verified.
|
pass # This mode is not verified.
|
||||||
@@ -1001,42 +1009,42 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
if mix_times is not None:
|
if mix_times is not None:
|
||||||
mix_times = int(mix_times)
|
mix_times = int(mix_times)
|
||||||
|
|
||||||
# 识别传输模式
|
# 识别传输模式(mix_times 为 None 也应该能正常移液,只是不做 mix)
|
||||||
num_sources = len(sources)
|
num_sources = len(sources)
|
||||||
num_targets = len(targets)
|
num_targets = len(targets)
|
||||||
|
|
||||||
if num_sources == 1 and num_targets > 1:
|
if num_sources == 1 and num_targets > 1:
|
||||||
# 模式1: 一对多 (1 source -> N targets)
|
# 模式1: 一对多 (1 source -> N targets)
|
||||||
await self._transfer_one_to_many(
|
await self._transfer_one_to_many(
|
||||||
sources[0], targets, tip_racks, use_channels,
|
sources[0], targets, tip_racks, use_channels,
|
||||||
asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
|
asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
|
||||||
offsets, touch_tip, liquid_height, blow_out_air_volume,
|
offsets, touch_tip, liquid_height, blow_out_air_volume,
|
||||||
spread, mix_stage, mix_times, mix_vol, mix_rate,
|
spread, mix_stage, mix_times, mix_vol, mix_rate,
|
||||||
mix_liquid_height, delays
|
mix_liquid_height, delays
|
||||||
)
|
)
|
||||||
elif num_sources > 1 and num_targets == 1:
|
elif num_sources > 1 and num_targets == 1:
|
||||||
# 模式2: 多对一 (N sources -> 1 target)
|
# 模式2: 多对一 (N sources -> 1 target)
|
||||||
await self._transfer_many_to_one(
|
await self._transfer_many_to_one(
|
||||||
sources, targets[0], tip_racks, use_channels,
|
sources, targets[0], tip_racks, use_channels,
|
||||||
asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
|
asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
|
||||||
offsets, touch_tip, liquid_height, blow_out_air_volume,
|
offsets, touch_tip, liquid_height, blow_out_air_volume,
|
||||||
spread, mix_stage, mix_times, mix_vol, mix_rate,
|
spread, mix_stage, mix_times, mix_vol, mix_rate,
|
||||||
mix_liquid_height, delays
|
mix_liquid_height, delays
|
||||||
)
|
)
|
||||||
elif num_sources == num_targets:
|
elif num_sources == num_targets:
|
||||||
# 模式3: 一对一 (N sources -> N targets) - 原有逻辑
|
# 模式3: 一对一 (N sources -> N targets)
|
||||||
await self._transfer_one_to_one(
|
await self._transfer_one_to_one(
|
||||||
sources, targets, tip_racks, use_channels,
|
sources, targets, tip_racks, use_channels,
|
||||||
asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
|
asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
|
||||||
offsets, touch_tip, liquid_height, blow_out_air_volume,
|
offsets, touch_tip, liquid_height, blow_out_air_volume,
|
||||||
spread, mix_stage, mix_times, mix_vol, mix_rate,
|
spread, mix_stage, mix_times, mix_vol, mix_rate,
|
||||||
mix_liquid_height, delays
|
mix_liquid_height, delays
|
||||||
)
|
)
|
||||||
else:
|
else:
|
||||||
raise ValueError(
|
raise ValueError(
|
||||||
f"Unsupported transfer mode: {num_sources} sources -> {num_targets} targets. "
|
f"Unsupported transfer mode: {num_sources} sources -> {num_targets} targets. "
|
||||||
"Supported modes: 1->N, N->1, or N->N."
|
"Supported modes: 1->N, N->1, or N->N."
|
||||||
)
|
)
|
||||||
|
|
||||||
async def _transfer_one_to_one(
|
async def _transfer_one_to_one(
|
||||||
self,
|
self,
|
||||||
@@ -1076,6 +1084,16 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
tip.extend(next(self.current_tip))
|
tip.extend(next(self.current_tip))
|
||||||
await self.pick_up_tips(tip)
|
await self.pick_up_tips(tip)
|
||||||
|
|
||||||
|
if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
|
||||||
|
await self.mix(
|
||||||
|
targets=[targets[_]],
|
||||||
|
mix_time=mix_times,
|
||||||
|
mix_vol=mix_vol,
|
||||||
|
offsets=offsets if offsets else None,
|
||||||
|
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||||
|
mix_rate=mix_rate if mix_rate else None,
|
||||||
|
)
|
||||||
|
|
||||||
await self.aspirate(
|
await self.aspirate(
|
||||||
resources=[sources[_]],
|
resources=[sources[_]],
|
||||||
vols=[asp_vols[_]],
|
vols=[asp_vols[_]],
|
||||||
@@ -1136,6 +1154,16 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
current_dis_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
|
current_dis_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
|
||||||
current_dis_flow_rates = dis_flow_rates[i:i + 8] if dis_flow_rates else None
|
current_dis_flow_rates = dis_flow_rates[i:i + 8] if dis_flow_rates else None
|
||||||
|
|
||||||
|
if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
|
||||||
|
await self.mix(
|
||||||
|
targets=current_targets,
|
||||||
|
mix_time=mix_times,
|
||||||
|
mix_vol=mix_vol,
|
||||||
|
offsets=offsets if offsets else None,
|
||||||
|
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||||
|
mix_rate=mix_rate if mix_rate else None,
|
||||||
|
)
|
||||||
|
|
||||||
await self.aspirate(
|
await self.aspirate(
|
||||||
resources=current_reagent_sources,
|
resources=current_reagent_sources,
|
||||||
vols=current_asp_vols,
|
vols=current_asp_vols,
|
||||||
@@ -1217,6 +1245,17 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
tip.extend(next(self.current_tip))
|
tip.extend(next(self.current_tip))
|
||||||
await self.pick_up_tips(tip)
|
await self.pick_up_tips(tip)
|
||||||
|
|
||||||
|
if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
|
||||||
|
for idx, target in enumerate(targets):
|
||||||
|
await self.mix(
|
||||||
|
targets=[target],
|
||||||
|
mix_time=mix_times,
|
||||||
|
mix_vol=mix_vol,
|
||||||
|
offsets=offsets[idx:idx + 1] if offsets and len(offsets) > idx else None,
|
||||||
|
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||||
|
mix_rate=mix_rate if mix_rate else None,
|
||||||
|
)
|
||||||
|
|
||||||
# 从源容器吸液(总体积)
|
# 从源容器吸液(总体积)
|
||||||
await self.aspirate(
|
await self.aspirate(
|
||||||
resources=[source],
|
resources=[source],
|
||||||
@@ -1281,6 +1320,16 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
current_asp_liquid_height = liquid_height[0:1] * 8 if liquid_height and len(liquid_height) > 0 else [None] * 8
|
current_asp_liquid_height = liquid_height[0:1] * 8 if liquid_height and len(liquid_height) > 0 else [None] * 8
|
||||||
current_asp_blow_out_air_volume = blow_out_air_volume[0:1] * 8 if blow_out_air_volume and len(blow_out_air_volume) > 0 else [None] * 8
|
current_asp_blow_out_air_volume = blow_out_air_volume[0:1] * 8 if blow_out_air_volume and len(blow_out_air_volume) > 0 else [None] * 8
|
||||||
|
|
||||||
|
if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
|
||||||
|
await self.mix(
|
||||||
|
targets=current_targets,
|
||||||
|
mix_time=mix_times,
|
||||||
|
mix_vol=mix_vol,
|
||||||
|
offsets=offsets[i:i + 8] if offsets else None,
|
||||||
|
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||||
|
mix_rate=mix_rate if mix_rate else None,
|
||||||
|
)
|
||||||
|
|
||||||
# 从源容器吸液(8个通道都从同一个源,但每个通道的吸液体积不同)
|
# 从源容器吸液(8个通道都从同一个源,但每个通道的吸液体积不同)
|
||||||
await self.aspirate(
|
await self.aspirate(
|
||||||
resources=[source] * 8, # 8个通道都从同一个源
|
resources=[source] * 8, # 8个通道都从同一个源
|
||||||
@@ -1379,8 +1428,14 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
# 单通道模式:多次吸液,一次分液
|
# 单通道模式:多次吸液,一次分液
|
||||||
# 先混合前(如果需要)
|
# 先混合前(如果需要)
|
||||||
if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
|
if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
|
||||||
# 注意:在吸液前混合源容器通常不常见,这里跳过
|
await self.mix(
|
||||||
pass
|
targets=[target],
|
||||||
|
mix_time=mix_times,
|
||||||
|
mix_vol=mix_vol,
|
||||||
|
offsets=offsets[0:1] if offsets else None,
|
||||||
|
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||||
|
mix_rate=mix_rate if mix_rate else None,
|
||||||
|
)
|
||||||
|
|
||||||
# 从每个源容器吸液并分液到目标容器
|
# 从每个源容器吸液并分液到目标容器
|
||||||
for idx, source in enumerate(sources):
|
for idx, source in enumerate(sources):
|
||||||
@@ -1455,6 +1510,16 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
raise ValueError(f"For 8-channel mode, number of sources {len(sources)} must be a multiple of 8.")
|
raise ValueError(f"For 8-channel mode, number of sources {len(sources)} must be a multiple of 8.")
|
||||||
|
|
||||||
# 每次处理8个源
|
# 每次处理8个源
|
||||||
|
if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
|
||||||
|
await self.mix(
|
||||||
|
targets=[target],
|
||||||
|
mix_time=mix_times,
|
||||||
|
mix_vol=mix_vol,
|
||||||
|
offsets=offsets[0:1] if offsets else None,
|
||||||
|
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||||
|
mix_rate=mix_rate if mix_rate else None,
|
||||||
|
)
|
||||||
|
|
||||||
for i in range(0, len(sources), 8):
|
for i in range(0, len(sources), 8):
|
||||||
tip = []
|
tip = []
|
||||||
for _ in range(len(use_channels)):
|
for _ in range(len(use_channels)):
|
||||||
|
|||||||
13
unilabos/devices/liquid_handling/test_transfer_liquid.py
Normal file
13
unilabos/devices/liquid_handling/test_transfer_liquid.py
Normal file
@@ -0,0 +1,13 @@
|
|||||||
|
"""
|
||||||
|
说明:
|
||||||
|
这里放一个“入口文件”,方便在 `unilabos/devices/liquid_handling` 目录下直接找到
|
||||||
|
`transfer_liquid` 的测试。
|
||||||
|
|
||||||
|
实际测试用例实现放在仓库标准测试目录:
|
||||||
|
`test/devices/liquid_handling/test_transfer_liquid.py`
|
||||||
|
"""
|
||||||
|
|
||||||
|
# 让 pytest 能从这里发现同一套测试(避免复制两份测试代码)。
|
||||||
|
from test.devices.liquid_handling.test_transfer_liquid import * # noqa: F401,F403
|
||||||
|
|
||||||
|
|
||||||
Reference in New Issue
Block a user