fix biomek startup

add action handles

unilabos/devices/liquid_handling/biomek.py

@@ -23,8 +23,8 @@ class LiquidHandlerBiomek(LiquidHandlerAbstract):
     该类用于处理Biomek液体处理器的特定操作。
     """
 
-    def __init__(self, *args, **kwargs):
-        super().__init__(*args, **kwargs)
+    def __init__(self, backend=None, deck=None, *args, **kwargs):
+        super().__init__(backend, deck, *args, **kwargs)
         self._status = "Idle"  # 初始状态为 Idle
         self._success = False  # 初始成功状态为 False
         self._status_queue = kwargs.get("status_queue", None)  # 状态队列
@@ -421,7 +421,6 @@ class LiquidHandlerBiomek(LiquidHandlerAbstract):
 
 
 if __name__ == "__main__":
-
     steps_info = ''' 
     {
       "steps": [
@@ -684,11 +683,8 @@ if __name__ == "__main__":
       ]
     }
     '''
-
-
-
-labware_with_liquid = '''
-[    {
+    labware_with_liquid = '''
+    [    {
             "id": "stock plate on P1",
             "parent": "deck",
             "slot_on_deck": "P1",
@@ -897,21 +893,18 @@ labware_with_liquid = '''
         ]
         
         '''
+    handler = LiquidHandlerBiomek()
 
-
-
-handler = LiquidHandlerBiomek()
-
-handler.temp_protocol = {
+    handler.temp_protocol = {
         "meta": {},
         "labwares": [],
         "steps": []
-}
+    }
 
-input_steps = json.loads(steps_info)
-labwares = json.loads(labware_with_liquid)
+    input_steps = json.loads(steps_info)
+    labwares = json.loads(labware_with_liquid)
 
-for step in input_steps['steps']:
+    for step in input_steps['steps']:
         operation = step['operation']
         parameters = step['parameters']
 
@@ -931,6 +924,6 @@ for step in input_steps['steps']:
         elif operation == 'incubation':
             handler.incubation_biomek(time=parameters['time'])
 
-print(json.dumps(handler.temp_protocol, indent=4))
+    print(json.dumps(handler.temp_protocol, indent=4))
 
 

unilabos/registry/devices/liquid_handler.yaml

@@ -340,6 +340,21 @@ liquid_handler.biomek:
           none_keys: none_keys
         feedback: {}
         result: {}
+        handles:
+          input:
+            - handler_key: liquid-input
+              label: Liquid Input
+              data_type: resource
+              io_type: target
+              data_source: handle
+              data_key: liquid
+          output:
+            - handler_key: liquid-output
+              label: Liquid Output
+              data_type: resource
+              io_type: source
+              data_source: executor
+              data_key: liquid
       transfer_biomek:
         type: LiquidHandlerTransferBiomek
         goal:
@@ -351,6 +366,21 @@ liquid_handler.biomek:
           dispense_techniques: dispense_techniques
         feedback: {}
         result: {}
+        handles:
+          input:
+            - handler_key: liquid-input
+              label: Liquid Input
+              data_type: resource
+              io_type: target
+              data_source: handle
+              data_key: liquid
+          output:
+            - handler_key: liquid-output
+              label: Liquid Output
+              data_type: resource
+              io_type: source
+              data_source: executor
+              data_key: liquid
   schema:
     type: object
     properties: {}