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Refactor Bioyond workstation and experiment workflow (#105)

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Refactored the Bioyond workstation classes to improve parameter handling and workflow management. Updated experiment.py to use BioyondReactionStation with deck and material mappings, and enhanced workflow step parameter mapping and execution logic. Adjusted JSON experiment configs, improved workflow sequence handling, and added UUID assignment to PLR materials. Removed unused station_config and material cache logic, and added detailed docstrings and debug output for workflow methods.
This commit is contained in:
ZiWei
2025-10-14 02:46:31 +08:00
committed by GitHub
parent a5b0325301
commit 4ddabdcb65
7 changed files with 599 additions and 154 deletions
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11
test/experiments/dispensing_station_bioyond.json
View File

@@ -8,7 +8,7 @@
],
"parent": null,
"type": "device",
"class": "dispensing_station.bioyond",
"class": "workstation.bioyond_dispensing_station",
"config": {
"config": {
"api_key": "DE9BDDA0",
@@ -20,13 +20,6 @@
"_resource_type": "unilabos.resources.bioyond.decks:BIOYOND_PolymerPreparationStation_Deck"
}
},
"station_config": {
"station_type": "dispensing_station",
"enable_dispensing_station": true,
"enable_reaction_station": false,
"station_name": "DispensingStation_001",
"description": "Bioyond配液工作站"
},
"protocol_type": []
},
"data": {}
@@ -57,4 +50,4 @@
"data": {}
}
]
}
}

11
test/experiments/reaction_station_bioyond.json
View File

@@ -24,9 +24,13 @@
"Drip_back": "3a162cf9-6aac-565a-ddd7-682ba1796a4a"
},
"material_type_mappings": {
"烧杯": "BIOYOND_PolymerStation_1FlaskCarrier",
"试剂瓶": "BIOYOND_PolymerStation_1BottleCarrier",
"样品板": "BIOYOND_PolymerStation_6VialCarrier"
"烧杯": ["BIOYOND_PolymerStation_1FlaskCarrier", "3a14196b-24f2-ca49-9081-0cab8021bf1a"],
"试剂瓶": ["BIOYOND_PolymerStation_1BottleCarrier", ""],
"样品板": ["BIOYOND_PolymerStation_6StockCarrier", "3a14196e-b7a0-a5da-1931-35f3000281e9"],
"分装板": ["BIOYOND_PolymerStation_6VialCarrier", "3a14196e-5dfe-6e21-0c79-fe2036d052c4"],
"样品瓶": ["BIOYOND_PolymerStation_Solid_Stock", "3a14196a-cf7d-8aea-48d8-b9662c7dba94"],
"90%分装小瓶": ["BIOYOND_PolymerStation_Solid_Vial", "3a14196c-cdcf-088d-dc7d-5cf38f0ad9ea"],
"10%分装小瓶": ["BIOYOND_PolymerStation_Liquid_Vial", "3a14196c-76be-2279-4e22-7310d69aed68"]
}
},
"deck": {
@@ -42,7 +46,6 @@
{
"id": "Bioyond_Deck",
"name": "Bioyond_Deck",
"sample_id": null,
"children": [
],
"parent": "reaction_station_bioyond",