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Refactor Bioyond workstation and experiment workflow (#105)

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Refactored the Bioyond workstation classes to improve parameter handling and workflow management. Updated experiment.py to use BioyondReactionStation with deck and material mappings, and enhanced workflow step parameter mapping and execution logic. Adjusted JSON experiment configs, improved workflow sequence handling, and added UUID assignment to PLR materials. Removed unused station_config and material cache logic, and added detailed docstrings and debug output for workflow methods.
This commit is contained in:
ZiWei
2025-10-14 02:46:31 +08:00
committed by GitHub
parent a5b0325301
commit 4ddabdcb65
7 changed files with 599 additions and 154 deletions
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194
unilabos/devices/workstation/bioyond_studio/experiment.py
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@@ -1,203 +1,205 @@
# experiment_workflow.py
"""
实验流程主程序
"""
import json
from bioyond_rpc import BioyondV1RPC
from config import API_CONFIG, WORKFLOW_MAPPINGS
from reaction_station import BioyondReactionStation
from config import API_CONFIG, WORKFLOW_MAPPINGS, DECK_CONFIG, MATERIAL_TYPE_MAPPINGS
def run_experiment():
"""运行实验流程"""
# 初始化Bioyond客户端
config = {
**API_CONFIG,
"workflow_mappings": WORKFLOW_MAPPINGS
"workflow_mappings": WORKFLOW_MAPPINGS,
"material_type_mappings": MATERIAL_TYPE_MAPPINGS
}
Bioyond = BioyondV1RPC(config)
# 创建BioyondReactionStation实例，传入deck配置
Bioyond = BioyondReactionStation(
config=config,
deck=DECK_CONFIG
)
print("\n============= 多工作流参数测试（简化接口+材料缓存）=============")
# 显示可用的材料名称（前20个）
available_materials = Bioyond.get_available_materials()
available_materials = Bioyond.hardware_interface.get_available_materials()
print(f"可用材料名称（前20个）: {available_materials[:20]}")
print(f"总共有 {len(available_materials)} 个材料可用\n")
# 1. 反应器放入
print("1. 添加反应器放入工作流，带参数...")
Bioyond.reactor_taken_in(
assign_material_name="BTDA-DD",
cutoff="10000",
assign_material_name="BTDA-DD",
cutoff="10000",
temperature="-10"
)
# 2. 液体投料-烧杯 (第一个)
print("2. 添加液体投料-烧杯，带参数...")
Bioyond.liquid_feeding_beaker(
volume="34768.7",
volume="34768.7",
assign_material_name="ODA",
time="0",
torque_variation="1",
titrationType="1",
time="0",
torque_variation="1",
titrationType="1",
temperature=-10
)
# 3. 液体投料-烧杯 (第二个)
print("3. 添加液体投料-烧杯，带参数...")
Bioyond.liquid_feeding_beaker(
volume="34080.9",
volume="34080.9",
assign_material_name="MPDA",
time="5",
torque_variation="2",
titrationType="1",
time="5",
torque_variation="2",
titrationType="1",
temperature=0
)
# 4. 液体投料-小瓶非滴定
print("4. 添加液体投料-小瓶非滴定，带参数...")
Bioyond.liquid_feeding_vials_non_titration(
volumeFormula="639.5",
assign_material_name="SIDA",
titration_type="1",
time="0",
torque_variation="1",
volumeFormula="639.5",
assign_material_name="SIDA",
titration_type="1",
time="0",
torque_variation="1",
temperature=-10
)
# 5. 液体投料溶剂
print("5. 添加液体投料溶剂，带参数...")
Bioyond.liquid_feeding_solvents(
assign_material_name="NMP",
volume="19000",
titration_type="1",
time="5",
torque_variation="2",
volume="19000",
titration_type="1",
time="5",
torque_variation="2",
temperature=-10
)
# 6-8. 固体进料小瓶 (三个)
print("6. 添加固体进料小瓶，带参数...")
Bioyond.solid_feeding_vials(
material_id="3",
time="180",
material_id="3",
time="180",
torque_variation="2",
assign_material_name="BTDA-1",
assign_material_name="BTDA1",
temperature=-10.00
)
#二杆，样品版90
print("7. 添加固体进料小瓶，带参数...")
Bioyond.solid_feeding_vials(
material_id="3",
time="180",
material_id="3",
time="180",
torque_variation="2",
assign_material_name="BTDA-2",
assign_material_name="BTDA2",
temperature=25.00
)
#二杆，样品版90
print("8. 添加固体进料小瓶，带参数...")
Bioyond.solid_feeding_vials(
material_id="3",
time="480",
material_id="3",
time="480",
torque_variation="2",
assign_material_name="BTDA-3",
assign_material_name="BTDA3",
temperature=25.00
)
# 液体投料滴定（第一个）
print("9. 添加液体投料滴定，带参数...") # ODPA
Bioyond.liquid_feeding_titration(
volume_formula="1000",
volume_formula="{{6-0-5}}+{{7-0-5}}+{{8-0-5}}",
assign_material_name="BTDA-DD",
titration_type="1",
time="360",
torque_variation="2",
titration_type="1",
time="360",
torque_variation="2",
temperature="25.00"
)
# 液体投料滴定（第二个）
print("10. 添加液体投料滴定，带参数...") # ODPA
Bioyond.liquid_feeding_titration(
volume_formula="500",
volume_formula="500",
assign_material_name="BTDA-DD",
titration_type="1",
time="360",
torque_variation="2",
titration_type="1",
time="360",
torque_variation="2",
temperature="25.00"
)
# 液体投料滴定（第三个）
print("11. 添加液体投料滴定，带参数...") # ODPA
Bioyond.liquid_feeding_titration(
volume_formula="500",
volume_formula="500",
assign_material_name="BTDA-DD",
titration_type="1",
time="360",
torque_variation="2",
titration_type="1",
time="360",
torque_variation="2",
temperature="25.00"
)
print("12. 添加液体投料滴定，带参数...") # ODPA
Bioyond.liquid_feeding_titration(
volume_formula="500",
volume_formula="500",
assign_material_name="BTDA-DD",
titration_type="1",
time="360",
torque_variation="2",
titration_type="1",
time="360",
torque_variation="2",
temperature="25.00"
)
print("13. 添加液体投料滴定，带参数...") # ODPA
Bioyond.liquid_feeding_titration(
volume_formula="500",
volume_formula="500",
assign_material_name="BTDA-DD",
titration_type="1",
time="360",
torque_variation="2",
titration_type="1",
time="360",
torque_variation="2",
temperature="25.00"
)
print("14. 添加液体投料滴定，带参数...") # ODPA
Bioyond.liquid_feeding_titration(
volume_formula="500",
volume_formula="500",
assign_material_name="BTDA-DD",
titration_type="1",
time="360",
torque_variation="2",
titration_type="1",
time="360",
torque_variation="2",
temperature="25.00"
)
print("15. 添加液体投料溶剂，带参数...")
Bioyond.liquid_feeding_solvents(
assign_material_name="PGME",
volume="16894.6",
titration_type="1",
time="360",
torque_variation="2",
volume="16894.6",
titration_type="1",
time="360",
torque_variation="2",
temperature=25.00
)
# 16. 反应器取出
print("16. 添加反应器取出工作流...")
Bioyond.reactor_taken_out()
# 显示当前工作流序列
sequence = Bioyond.get_workflow_sequence()
print("\n当前工作流执行顺序:")
print(sequence)
# 执行process_and_execute_workflow，合并工作流并创建任务
print("\n4. 执行process_and_execute_workflow...")
result = Bioyond.process_and_execute_workflow(
workflow_name="test3_86",
task_name="实验3_86"
workflow_name="test3_8",
task_name="实验3_8"
)
# 显示执行结果
print("\n5. 执行结果:")
if isinstance(result, str):
@@ -220,16 +222,16 @@ def run_experiment():
print(f"- 任务结果: {result.get('task')}")
else:
print(f"任务创建失败: {result.get('error')}")
# 可选：启动调度器
# Bioyond.scheduler_start()
return Bioyond
def prepare_materials(bioyond):
"""准备实验材料（可选）"""
# 样品板材料数据定义
material_data_yp_1 = {
"typeId": "3a142339-80de-8f25-6093-1b1b1b6c322e",
@@ -288,7 +290,7 @@ def prepare_materials(bioyond):
],
"Parameters": "{}"
}
material_data_yp_2 = {
"typeId": "3a142339-80de-8f25-6093-1b1b1b6c322e",
"name": "样品板-2",
@@ -338,7 +340,7 @@ def prepare_materials(bioyond):
],
"Parameters": "{}"
}
# 烧杯材料数据定义
beaker_materials = [
{
@@ -377,12 +379,12 @@ def prepare_materials(bioyond):
"parameters": "{\"DeviceMaterialType\":\"NMP\"}"
}
]
# 如果需要，可以在这里调用add_material方法添加材料
# 例如:
# result = bioyond.add_material(json.dumps(material_data_yp_1))
# print(f"添加材料结果: {result}")
return {
"sample_plates": [material_data_yp_1, material_data_yp_2],
"beakers": beaker_materials
@@ -392,7 +394,7 @@ def prepare_materials(bioyond):
if __name__ == "__main__":
# 运行主实验流程
bioyond_client = run_experiment()
# 可选：准备材料数据
# materials = prepare_materials(bioyond_client)
# print(f"\n准备的材料数据: {materials}")