fix all protocol_compilers and remove deprecated devices

unilabos/compile/transfer_protocol.py

@@ -1,79 +0,0 @@
-from typing import List, Dict, Any
-import networkx as nx
-
-def generate_transfer_protocol(
-    G: nx.DiGraph,
-    from_vessel: str,
-    to_vessel: str,
-    volume: float,
-    amount: str = "",
-    time: float = 0,
-    viscous: bool = False,
-    rinsing_solvent: str = "",
-    rinsing_volume: float = 0.0,
-    rinsing_repeats: int = 0,
-    solid: bool = False
-) -> List[Dict[str, Any]]:
-    """
-    生成液体转移操作的协议序列
-    
-    Args:
-        G: 有向图，节点为设备和容器
-        from_vessel: 源容器
-        to_vessel: 目标容器
-        volume: 转移体积 (mL)
-        amount: 数量描述 (可选)
-        time: 转移时间 (秒，可选)
-        viscous: 是否为粘性液体
-        rinsing_solvent: 冲洗溶剂 (可选)
-        rinsing_volume: 冲洗体积 (mL，可选)
-        rinsing_repeats: 冲洗重复次数
-        solid: 是否涉及固体
-    
-    Returns:
-        List[Dict[str, Any]]: 转移操作的动作序列
-    
-    Raises:
-        ValueError: 当找不到合适的转移设备时抛出异常
-    
-    Examples:
-        transfer_protocol = generate_transfer_protocol(G, "flask_1", "reactor", 10.0)
-    """
-    action_sequence = []
-    
-    # 查找虚拟转移泵设备用于液体转移 - 修复：应该查找 virtual_transfer_pump
-    pump_nodes = [node for node in G.nodes() 
-                  if G.nodes[node].get('class') == 'virtual_transfer_pump']
-    
-    if not pump_nodes:
-        raise ValueError("没有找到可用的转移泵设备进行液体转移")
-    
-    # 使用第一个可用的泵
-    pump_id = pump_nodes[0]
-    
-    # 验证容器是否存在
-    if from_vessel not in G.nodes():
-        raise ValueError(f"源容器 {from_vessel} 不存在于图中")
-    
-    if to_vessel not in G.nodes():
-        raise ValueError(f"目标容器 {to_vessel} 不存在于图中")
-    
-    # 执行液体转移操作 - 参数完全匹配Transfer.action
-    action_sequence.append({
-        "device_id": pump_id,
-        "action_name": "transfer",
-        "action_kwargs": {
-            "from_vessel": from_vessel,
-            "to_vessel": to_vessel,
-            "volume": volume,
-            "amount": amount,
-            "time": time,
-            "viscous": viscous,
-            "rinsing_solvent": rinsing_solvent,
-            "rinsing_volume": rinsing_volume,
-            "rinsing_repeats": rinsing_repeats,
-            "solid": solid
-        }
-    })
-    
-    return action_sequence