fix all protocol_compilers and remove deprecated devices

test/experiments/comprehensive_protocol/comprehensive_station.json

@@ -49,7 +49,6 @@
             "config": {
                 "protocol_type": [
                     "AddProtocol",
-                    "TransferProtocol",
                     "StartStirProtocol",
                     "StopStirProtocol",
                     "StirProtocol",
@@ -1077,7 +1076,7 @@
             "target": "solid_dispenser_1",
             "type": "resource",
             "port": {
-                "solid_reagent_bottle_1": "top",
+                "solid_reagent_bottle_1": "bottom",
                 "solid_dispenser_1": "SolidIn"
             }
         },
@@ -1087,7 +1086,7 @@
             "target": "solid_dispenser_1",
             "type": "resource",
             "port": {
-                "solid_reagent_bottle_2": "top",
+                "solid_reagent_bottle_2": "bottom",
                 "solid_dispenser_1": "SolidIn"
             }
         },
@@ -1097,7 +1096,7 @@
             "target": "solid_dispenser_1",
             "type": "resource",
             "port": {
-                "solid_reagent_bottle_3": "top",
+                "solid_reagent_bottle_3": "bottom",
                 "solid_dispenser_1": "SolidIn"
             }
         }

unilabos/compile/__init__.py

@@ -15,7 +15,6 @@ from .heatchill_protocol import (
     generate_heat_chill_to_temp_protocol  # 保留导入，但不注册为协议
 )
 from .stir_protocol import generate_stir_protocol, generate_start_stir_protocol, generate_stop_stir_protocol
-from .transfer_protocol import generate_transfer_protocol
 from .clean_vessel_protocol import generate_clean_vessel_protocol
 from .dissolve_protocol import generate_dissolve_protocol
 from .filter_through_protocol import generate_filter_through_protocol
@@ -54,6 +53,5 @@ action_protocol_generators = {
     StartStirProtocol: generate_start_stir_protocol,
     StirProtocol: generate_stir_protocol,
     StopStirProtocol: generate_stop_stir_protocol,
-    TransferProtocol: generate_transfer_protocol,
     WashSolidProtocol: generate_wash_solid_protocol,
 }

unilabos/compile/add_protocol.py

@@ -1,314 +1,24 @@
+from functools import partial
+
 import networkx as nx
 import re
 import logging
 from typing import List, Dict, Any, Union
-from .utils.vessel_parser import get_vessel
+
+from .utils.unit_parser import parse_volume_input, parse_mass_input, parse_time_input
+from .utils.vessel_parser import get_vessel, find_solid_dispenser, find_connected_stirrer, find_reagent_vessel
+from .utils.logger_util import action_log
 from .pump_protocol import generate_pump_protocol_with_rinsing
 
 logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """调试输出"""
-    print(f"[ADD] {message}", flush=True)
     logger.info(f"[ADD] {message}")
 
-def parse_volume_input(volume_input: Union[str, float]) -> float:
-    """
-    解析体积输入，支持带单位的字符串
-    
-    Args:
-        volume_input: 体积输入（如 "2.7 mL", "2.67 mL", "?", 10.0）
-    
-    Returns:
-        float: 体积（毫升）
-    """
-    if isinstance(volume_input, (int, float)):
-        debug_print(f"📏 体积输入为数值: {volume_input}")
-        return float(volume_input)
-    
-    if not volume_input or not str(volume_input).strip():
-        debug_print(f"⚠️ 体积输入为空，返回0.0mL")
-        return 0.0
-    
-    volume_str = str(volume_input).lower().strip()
-    debug_print(f"🔍 解析体积输入: '{volume_str}'")
-    
-    # 处理未知体积
-    if volume_str in ['?', 'unknown', 'tbd', 'to be determined']:
-        default_volume = 10.0  # 默认10mL
-        debug_print(f"❓ 检测到未知体积，使用默认值: {default_volume}mL 🎯")
-        return default_volume
-    
-    # 移除空格并提取数字和单位
-    volume_clean = re.sub(r'\s+', '', volume_str)
-    
-    # 匹配数字和单位的正则表达式
-    match = re.match(r'([0-9]*\.?[0-9]+)\s*(ml|l|μl|ul|microliter|milliliter|liter)?', volume_clean)
-    
-    if not match:
-        debug_print(f"❌ 无法解析体积: '{volume_str}'，使用默认值10mL")
-        return 10.0
-    
-    value = float(match.group(1))
-    unit = match.group(2) or 'ml'  # 默认单位为毫升
-    
-    # 转换为毫升
-    if unit in ['l', 'liter']:
-        volume = value * 1000.0  # L -> mL
-        debug_print(f"🔄 体积转换: {value}L → {volume}mL")
-    elif unit in ['μl', 'ul', 'microliter']:
-        volume = value / 1000.0  # μL -> mL
-        debug_print(f"🔄 体积转换: {value}μL → {volume}mL")
-    else:  # ml, milliliter 或默认
-        volume = value  # 已经是mL
-        debug_print(f"✅ 体积已为mL: {volume}mL")
-    
-    return volume
-
-def parse_mass_input(mass_input: Union[str, float]) -> float:
-    """
-    解析质量输入，支持带单位的字符串
-    
-    Args:
-        mass_input: 质量输入（如 "19.3 g", "4.5 g", 2.5）
-    
-    Returns:
-        float: 质量（克）
-    """
-    if isinstance(mass_input, (int, float)):
-        debug_print(f"⚖️ 质量输入为数值: {mass_input}g")
-        return float(mass_input)
-    
-    if not mass_input or not str(mass_input).strip():
-        debug_print(f"⚠️ 质量输入为空，返回0.0g")
-        return 0.0
-    
-    mass_str = str(mass_input).lower().strip()
-    debug_print(f"🔍 解析质量输入: '{mass_str}'")
-    
-    # 移除空格并提取数字和单位
-    mass_clean = re.sub(r'\s+', '', mass_str)
-    
-    # 匹配数字和单位的正则表达式
-    match = re.match(r'([0-9]*\.?[0-9]+)\s*(g|mg|kg|gram|milligram|kilogram)?', mass_clean)
-    
-    if not match:
-        debug_print(f"❌ 无法解析质量: '{mass_str}'，返回0.0g")
-        return 0.0
-    
-    value = float(match.group(1))
-    unit = match.group(2) or 'g'  # 默认单位为克
-    
-    # 转换为克
-    if unit in ['mg', 'milligram']:
-        mass = value / 1000.0  # mg -> g
-        debug_print(f"🔄 质量转换: {value}mg → {mass}g")
-    elif unit in ['kg', 'kilogram']:
-        mass = value * 1000.0  # kg -> g
-        debug_print(f"🔄 质量转换: {value}kg → {mass}g")
-    else:  # g, gram 或默认
-        mass = value  # 已经是g
-        debug_print(f"✅ 质量已为g: {mass}g")
-    
-    return mass
-
-def parse_time_input(time_input: Union[str, float]) -> float:
-    """
-    解析时间输入，支持带单位的字符串
-    
-    Args:
-        time_input: 时间输入（如 "1 h", "20 min", "30 s", 60.0）
-    
-    Returns:
-        float: 时间（秒）
-    """
-    if isinstance(time_input, (int, float)):
-        debug_print(f"⏱️ 时间输入为数值: {time_input}秒")
-        return float(time_input)
-    
-    if not time_input or not str(time_input).strip():
-        debug_print(f"⚠️ 时间输入为空，返回0秒")
-        return 0.0
-    
-    time_str = str(time_input).lower().strip()
-    debug_print(f"🔍 解析时间输入: '{time_str}'")
-    
-    # 处理未知时间
-    if time_str in ['?', 'unknown', 'tbd']:
-        default_time = 60.0  # 默认1分钟
-        debug_print(f"❓ 检测到未知时间，使用默认值: {default_time}s (1分钟) ⏰")
-        return default_time
-    
-    # 移除空格并提取数字和单位
-    time_clean = re.sub(r'\s+', '', time_str)
-    
-    # 匹配数字和单位的正则表达式
-    match = re.match(r'([0-9]*\.?[0-9]+)\s*(s|sec|second|min|minute|h|hr|hour|d|day)?', time_clean)
-    
-    if not match:
-        debug_print(f"❌ 无法解析时间: '{time_str}'，返回0s")
-        return 0.0
-    
-    value = float(match.group(1))
-    unit = match.group(2) or 's'  # 默认单位为秒
-    
-    # 转换为秒
-    if unit in ['min', 'minute']:
-        time_sec = value * 60.0  # min -> s
-        debug_print(f"🔄 时间转换: {value}分钟 → {time_sec}秒")
-    elif unit in ['h', 'hr', 'hour']:
-        time_sec = value * 3600.0  # h -> s
-        debug_print(f"🔄 时间转换: {value}小时 → {time_sec}秒")
-    elif unit in ['d', 'day']:
-        time_sec = value * 86400.0  # d -> s
-        debug_print(f"🔄 时间转换: {value}天 → {time_sec}秒")
-    else:  # s, sec, second 或默认
-        time_sec = value  # 已经是s
-        debug_print(f"✅ 时间已为秒: {time_sec}秒")
-    
-    return time_sec
-
-def find_reagent_vessel(G: nx.DiGraph, reagent: str) -> str:
-    """增强版试剂容器查找，支持固体和液体"""
-    debug_print(f"🔍 开始查找试剂 '{reagent}' 的容器...")
-    
-    # 🔧 方法1：直接搜索 data.reagent_name 和 config.reagent
-    debug_print(f"📋 方法1: 搜索reagent字段...")
-    for node in G.nodes():
-        node_data = G.nodes[node].get('data', {})
-        node_type = G.nodes[node].get('type', '')
-        config_data = G.nodes[node].get('config', {})
-        
-        # 只搜索容器类型的节点
-        if node_type == 'container':
-            reagent_name = node_data.get('reagent_name', '').lower()
-            config_reagent = config_data.get('reagent', '').lower()
-            
-            # 精确匹配
-            if reagent_name == reagent.lower() or config_reagent == reagent.lower():
-                debug_print(f"✅ 通过reagent字段精确匹配到容器: {node} 🎯")
-                return node
-            
-            # 模糊匹配
-            if (reagent.lower() in reagent_name and reagent_name) or \
-               (reagent.lower() in config_reagent and config_reagent):
-                debug_print(f"✅ 通过reagent字段模糊匹配到容器: {node} 🔍")
-                return node
-    
-    # 🔧 方法2：常见的容器命名规则
-    debug_print(f"📋 方法2: 使用命名规则查找...")
-    reagent_clean = reagent.lower().replace(' ', '_').replace('-', '_')
-    possible_names = [
-        reagent_clean,
-        f"flask_{reagent_clean}",
-        f"bottle_{reagent_clean}",
-        f"vessel_{reagent_clean}", 
-        f"{reagent_clean}_flask",
-        f"{reagent_clean}_bottle",
-        f"reagent_{reagent_clean}",
-        f"reagent_bottle_{reagent_clean}",
-        f"solid_reagent_bottle_{reagent_clean}",
-        f"reagent_bottle_1",  # 通用试剂瓶
-        f"reagent_bottle_2",
-        f"reagent_bottle_3"
-    ]
-    
-    debug_print(f"🔍 尝试的容器名称: {possible_names[:5]}... (共{len(possible_names)}个)")
-    
-    for name in possible_names:
-        if name in G.nodes():
-            node_type = G.nodes[name].get('type', '')
-            if node_type == 'container':
-                debug_print(f"✅ 通过命名规则找到容器: {name} 📝")
-                return name
-    
-    # 🔧 方法3：节点名称模糊匹配
-    debug_print(f"📋 方法3: 节点名称模糊匹配...")
-    for node_id in G.nodes():
-        node_data = G.nodes[node_id]
-        if node_data.get('type') == 'container':
-            # 检查节点名称是否包含试剂名称
-            if reagent_clean in node_id.lower():
-                debug_print(f"✅ 通过节点名称模糊匹配到容器: {node_id} 🔍")
-                return node_id
-            
-            # 检查液体类型匹配
-            vessel_data = node_data.get('data', {})
-            liquids = vessel_data.get('liquid', [])
-            for liquid in liquids:
-                if isinstance(liquid, dict):
-                    liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
-                    if liquid_type.lower() == reagent.lower():
-                        debug_print(f"✅ 通过液体类型匹配到容器: {node_id} 💧")
-                        return node_id
-    
-    # 🔧 方法4：使用第一个试剂瓶作为备选
-    debug_print(f"📋 方法4: 查找备选试剂瓶...")
-    for node_id in G.nodes():
-        node_data = G.nodes[node_id]
-        if (node_data.get('type') == 'container' and 
-            ('reagent' in node_id.lower() or 'bottle' in node_id.lower())):
-            debug_print(f"⚠️ 未找到专用容器，使用备选试剂瓶: {node_id} 🔄")
-            return node_id
-    
-    debug_print(f"❌ 所有方法都失败了，无法找到容器!")
-    raise ValueError(f"找不到试剂 '{reagent}' 对应的容器")
-
-def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
-    """查找连接到指定容器的搅拌器"""
-    debug_print(f"🔍 查找连接到容器 '{vessel}' 的搅拌器...")
-    
-    stirrer_nodes = []
-    for node in G.nodes():
-        node_class = G.nodes[node].get('class', '').lower()
-        if 'stirrer' in node_class:
-            stirrer_nodes.append(node)
-            debug_print(f"📋 发现搅拌器: {node}")
-    
-    debug_print(f"📊 共找到 {len(stirrer_nodes)} 个搅拌器")
-    
-    # 查找连接到容器的搅拌器
-    for stirrer in stirrer_nodes:
-        if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
-            debug_print(f"✅ 找到连接的搅拌器: {stirrer} 🔗")
-            return stirrer
-    
-    # 返回第一个搅拌器
-    if stirrer_nodes:
-        debug_print(f"⚠️ 未找到直接连接的搅拌器，使用第一个: {stirrer_nodes[0]} 🔄")
-        return stirrer_nodes[0]
-    
-    debug_print(f"❌ 未找到任何搅拌器")
-    return ""
-
-def find_solid_dispenser(G: nx.DiGraph) -> str:
-    """查找固体加样器"""
-    debug_print(f"🔍 查找固体加样器...")
-    
-    for node in G.nodes():
-        node_class = G.nodes[node].get('class', '').lower()
-        if 'solid_dispenser' in node_class or 'dispenser' in node_class:
-            debug_print(f"✅ 找到固体加样器: {node} 🥄")
-            return node
-    
-    debug_print(f"❌ 未找到固体加样器")
-    return ""
 
 # 🆕 创建进度日志动作
-def create_action_log(message: str, emoji: str = "📝") -> Dict[str, Any]:
+create_action_log = partial(action_log, prefix="[ADD]")
-    """创建一个动作日志"""
-    full_message = f"{emoji} {message}"
-    debug_print(full_message)
-    logger.info(full_message)
-    print(f"[ACTION] {full_message}", flush=True)
-    
-    return {
-        "action_name": "wait",
-        "action_kwargs": {
-            "time": 0.1,
-            "log_message": full_message
-        }
-    }
 
 def generate_add_protocol(
     G: nx.DiGraph,
@@ -398,12 +108,7 @@ def generate_add_protocol(
     final_time = parse_time_input(time)
     
     debug_print(f"📊 解析结果:")
-    debug_print(f"  📏 体积: {final_volume}mL")
+    debug_print(f"  体积: {final_volume}mL, 质量: {final_mass}g, 时间: {final_time}s, 摩尔: '{mol}', 事件: '{event}', 速率: '{rate_spec}'")
-    debug_print(f"  ⚖️ 质量: {final_mass}g")
-    debug_print(f"  ⏱️ 时间: {final_time}s")
-    debug_print(f"  🧬 摩尔: '{mol}'")
-    debug_print(f"  🎯 事件: '{event}'")
-    debug_print(f"  ⚡ 速率: '{rate_spec}'")
     
     # === 判断添加类型 ===
     debug_print("🔍 步骤3: 判断添加类型...")

unilabos/compile/adjustph_protocol.py

@@ -8,25 +8,8 @@ logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """调试输出"""
-    print(f"[ADJUST_PH] {message}", flush=True)
     logger.info(f"[ADJUST_PH] {message}")
 
-# 🆕 创建进度日志动作
-def create_action_log(message: str, emoji: str = "📝") -> Dict[str, Any]:
-    """创建一个动作日志"""
-    full_message = f"{emoji} {message}"
-    debug_print(full_message)
-    logger.info(full_message)
-    print(f"[ACTION] {full_message}", flush=True)
-    
-    return {
-        "action_name": "wait",
-        "action_kwargs": {
-            "time": 0.1,
-            "log_message": full_message
-        }
-    }
-
 def find_acid_base_vessel(G: nx.DiGraph, reagent: str) -> str:
     """
     查找酸碱试剂容器，支持多种匹配模式

unilabos/compile/clean_vessel_protocol.py

@@ -1,102 +1,9 @@
 from typing import List, Dict, Any
 import networkx as nx
-from .utils.vessel_parser import get_vessel
+from .utils.vessel_parser import get_vessel, find_solvent_vessel
 from .pump_protocol import generate_pump_protocol
 
 
-def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
-    """
-    查找溶剂容器，支持多种匹配模式：
-    1. 容器名称匹配（如 flask_water, reagent_bottle_1-DMF）
-    2. 容器内液体类型匹配（如 liquid_type: "DMF", "ethanol"）
-    """
-    print(f"CLEAN_VESSEL: 正在查找溶剂 '{solvent}' 的容器...")
-    
-    # 第一步：通过容器名称匹配
-    possible_names = [
-        f"flask_{solvent}",           # flask_water, flask_ethanol
-        f"bottle_{solvent}",          # bottle_water, bottle_ethanol  
-        f"vessel_{solvent}",          # vessel_water, vessel_ethanol
-        f"{solvent}_flask",           # water_flask, ethanol_flask
-        f"{solvent}_bottle",          # water_bottle, ethanol_bottle
-        f"{solvent}",                 # 直接用溶剂名
-        f"solvent_{solvent}",         # solvent_water, solvent_ethanol
-        f"reagent_bottle_{solvent}",  # reagent_bottle_DMF
-    ]
-    
-    # 尝试名称匹配
-    for vessel_name in possible_names:
-        if vessel_name in G.nodes():
-            print(f"CLEAN_VESSEL: 通过名称匹配找到容器: {vessel_name}")
-            return vessel_name
-    
-    # 第二步：通过模糊名称匹配（名称中包含溶剂名）
-    for node_id in G.nodes():
-        if G.nodes[node_id].get('type') == 'container':
-            # 检查节点ID或名称中是否包含溶剂名
-            node_name = G.nodes[node_id].get('name', '').lower()
-            if (solvent.lower() in node_id.lower() or 
-                solvent.lower() in node_name):
-                print(f"CLEAN_VESSEL: 通过模糊名称匹配找到容器: {node_id} (名称: {node_name})")
-                return node_id
-    
-    # 第三步：通过液体类型匹配
-    for node_id in G.nodes():
-        if G.nodes[node_id].get('type') == 'container':
-            vessel_data = G.nodes[node_id].get('data', {})
-            liquids = vessel_data.get('liquid', [])
-            
-            for liquid in liquids:
-                if isinstance(liquid, dict):
-                    # 支持两种格式的液体类型字段
-                    liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
-                    reagent_name = vessel_data.get('reagent_name', '')
-                    config_reagent = G.nodes[node_id].get('config', {}).get('reagent', '')
-                    
-                    # 检查多个可能的字段
-                    if (liquid_type.lower() == solvent.lower() or 
-                        reagent_name.lower() == solvent.lower() or
-                        config_reagent.lower() == solvent.lower()):
-                        print(f"CLEAN_VESSEL: 通过液体类型匹配找到容器: {node_id}")
-                        print(f"  - liquid_type: {liquid_type}")
-                        print(f"  - reagent_name: {reagent_name}")
-                        print(f"  - config.reagent: {config_reagent}")
-                        return node_id
-    
-    # 第四步：列出所有可用的容器信息帮助调试
-    available_containers = []
-    for node_id in G.nodes():
-        if G.nodes[node_id].get('type') == 'container':
-            vessel_data = G.nodes[node_id].get('data', {})
-            config_data = G.nodes[node_id].get('config', {})
-            liquids = vessel_data.get('liquid', [])
-            
-            container_info = {
-                'id': node_id,
-                'name': G.nodes[node_id].get('name', ''),
-                'liquid_types': [],
-                'reagent_name': vessel_data.get('reagent_name', ''),
-                'config_reagent': config_data.get('reagent', '')
-            }
-            
-            for liquid in liquids:
-                if isinstance(liquid, dict):
-                    liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
-                    if liquid_type:
-                        container_info['liquid_types'].append(liquid_type)
-            
-            available_containers.append(container_info)
-    
-    print(f"CLEAN_VESSEL: 可用容器列表:")
-    for container in available_containers:
-        print(f"  - {container['id']}: {container['name']}")
-        print(f"    液体类型: {container['liquid_types']}")
-        print(f"    试剂名称: {container['reagent_name']}")
-        print(f"    配置试剂: {container['config_reagent']}")
-    
-    raise ValueError(f"未找到溶剂 '{solvent}' 的容器。尝试了名称匹配: {possible_names}")
-
-
 def find_solvent_vessel_by_any_match(G: nx.DiGraph, solvent: str) -> str:
     """
     增强版溶剂容器查找，支持各种匹配方式的别名函数

unilabos/compile/dissolve_protocol.py

@@ -1,33 +1,22 @@
+from functools import partial
+
 import networkx as nx
 import re
 import logging
 from typing import List, Dict, Any, Union
 
-from unilabos.compile.utils.vessel_parser import get_vessel
+from .utils.vessel_parser import get_vessel
+from .utils.logger_util import action_log
 from .pump_protocol import generate_pump_protocol_with_rinsing
 
 logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """调试输出"""
-    print(f"[DISSOLVE] {message}", flush=True)
     logger.info(f"[DISSOLVE] {message}")
 
 # 🆕 创建进度日志动作
-def create_action_log(message: str, emoji: str = "📝") -> Dict[str, Any]:
+create_action_log = partial(action_log, prefix="[DISSOLVE]")
-    """创建一个动作日志"""
-    full_message = f"{emoji} {message}"
-    debug_print(full_message)
-    logger.info(full_message)
-    print(f"[ACTION] {full_message}", flush=True)
-    
-    return {
-        "action_name": "wait",
-        "action_kwargs": {
-            "time": 0.1,
-            "log_message": full_message
-        }
-    }
 
 def parse_volume_input(volume_input: Union[str, float]) -> float:
     """

unilabos/compile/evacuateandrefill_protocol.py

@@ -1,9 +1,12 @@
+from functools import partial
+
 import networkx as nx
 import logging
 import uuid
 import sys
 from typing import List, Dict, Any, Optional
 from .utils.vessel_parser import get_vessel
+from .utils.logger_util import action_log
 from .pump_protocol import generate_pump_protocol_with_rinsing, generate_pump_protocol
 
 # 设置日志
@@ -22,48 +25,17 @@ def debug_print(message):
     try:
         # 确保消息是字符串格式
         safe_message = str(message)
-        print(f"[抽真空充气] {safe_message}", flush=True)
         logger.info(f"[抽真空充气] {safe_message}")
     except UnicodeEncodeError:
         # 如果编码失败，尝试替换不支持的字符
         safe_message = str(message).encode('utf-8', errors='replace').decode('utf-8')
-        print(f"[抽真空充气] {safe_message}", flush=True)
         logger.info(f"[抽真空充气] {safe_message}")
     except Exception as e:
         # 最后的安全措施
         fallback_message = f"日志输出错误: {repr(message)}"
-        print(f"[抽真空充气] {fallback_message}", flush=True)
         logger.info(f"[抽真空充气] {fallback_message}")
 
-def create_action_log(message: str, emoji: str = "📝") -> Dict[str, Any]:
+create_action_log = partial(action_log, prefix="[抽真空充气]")
-    """创建一个动作日志 - 支持中文和emoji"""
-    try:
-        full_message = f"{emoji} {message}"
-        debug_print(full_message)
-        logger.info(full_message)
-        
-        return {
-            "action_name": "wait",
-            "action_kwargs": {
-                "time": 0.1,
-                "log_message": full_message,
-                "progress_message": full_message
-            }
-        }
-    except Exception as e:
-        # 如果emoji有问题，使用纯文本
-        safe_message = f"[日志] {message}"
-        debug_print(safe_message)
-        logger.info(safe_message)
-        
-        return {
-            "action_name": "wait", 
-            "action_kwargs": {
-                "time": 0.1,
-                "log_message": safe_message,
-                "progress_message": safe_message
-            }
-        }
 
 def find_gas_source(G: nx.DiGraph, gas: str) -> str:
     """

unilabos/compile/evaporate_protocol.py

@@ -3,75 +3,14 @@ import networkx as nx
 import logging
 import re
 from .utils.vessel_parser import get_vessel
+from .utils.unit_parser import parse_time_input
 
 logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """调试输出"""
-    print(f"🧪 [EVAPORATE] {message}", flush=True)
     logger.info(f"[EVAPORATE] {message}")
 
-def parse_time_input(time_input: Union[str, float]) -> float:
-    """
-    解析时间输入，支持带单位的字符串
-    
-    Args:
-        time_input: 时间输入（如 "3 min", "180", "0.5 h" 等）
-    
-    Returns:
-        float: 时间（秒）
-    """
-    if isinstance(time_input, (int, float)):
-        debug_print(f"⏱️ 时间输入为数字: {time_input}s ✨")
-        return float(time_input)  # 🔧 确保返回float
-    
-    if not time_input or not str(time_input).strip():
-        debug_print(f"⚠️ 时间输入为空，使用默认值: 180s (3分钟) 🕐")
-        return 180.0  # 默认3分钟
-    
-    time_str = str(time_input).lower().strip()
-    debug_print(f"🔍 解析时间输入: '{time_str}' 📝")
-    
-    # 处理未知时间
-    if time_str in ['?', 'unknown', 'tbd']:
-        default_time = 180.0  # 默认3分钟
-        debug_print(f"❓ 检测到未知时间，使用默认值: {default_time}s (3分钟) 🤷‍♀️")
-        return default_time
-    
-    # 移除空格并提取数字和单位
-    time_clean = re.sub(r'\s+', '', time_str)
-    
-    # 匹配数字和单位的正则表达式
-    match = re.match(r'([0-9]*\.?[0-9]+)\s*(s|sec|second|min|minute|h|hr|hour|d|day)?', time_clean)
-    
-    if not match:
-        # 如果无法解析，尝试直接转换为数字（默认秒）
-        try:
-            value = float(time_str)
-            debug_print(f"✅ 时间解析成功: {time_str} → {value}s（无单位，默认秒）⏰")
-            return float(value)  # 🔧 确保返回float
-        except ValueError:
-            debug_print(f"❌ 无法解析时间: '{time_str}'，使用默认值180s (3分钟) 😅")
-            return 180.0
-    
-    value = float(match.group(1))
-    unit = match.group(2) or 's'  # 默认单位为秒
-    
-    # 转换为秒
-    if unit in ['min', 'minute']:
-        time_sec = value * 60.0  # min -> s
-        debug_print(f"🕐 时间转换: {value} 分钟 → {time_sec}s ⏰")
-    elif unit in ['h', 'hr', 'hour']:
-        time_sec = value * 3600.0  # h -> s
-        debug_print(f"🕐 时间转换: {value} 小时 → {time_sec}s ({time_sec/60:.1f}分钟) ⏰")
-    elif unit in ['d', 'day']:
-        time_sec = value * 86400.0  # d -> s
-        debug_print(f"🕐 时间转换: {value} 天 → {time_sec}s ({time_sec/3600:.1f}小时) ⏰")
-    else:  # s, sec, second 或默认
-        time_sec = value  # 已经是s
-        debug_print(f"🕐 时间转换: {value}s → {time_sec}s (已是秒) ⏰")
-    
-    return float(time_sec)  # 🔧 确保返回float
 
 def find_rotavap_device(G: nx.DiGraph, vessel: str = None) -> Optional[str]:
     """

unilabos/compile/filter_protocol.py

@@ -8,7 +8,6 @@ logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """调试输出"""
-    print(f"🧪 [FILTER] {message}", flush=True)
     logger.info(f"[FILTER] {message}")
 
 def find_filter_device(G: nx.DiGraph) -> str:
@@ -52,7 +51,7 @@ def validate_vessel(G: nx.DiGraph, vessel: str, vessel_type: str = "容器") ->
 def generate_filter_protocol(
     G: nx.DiGraph,
     vessel: dict,  # 🔧 修改：从字符串改为字典类型
-    filtrate_vessel: str = "",
+    filtrate_vessel: dict = {"id": "waste"},
     **kwargs
 ) -> List[Dict[str, Any]]:
     """
@@ -70,6 +69,7 @@ def generate_filter_protocol(
     
     # 🔧 核心修改：从字典中提取容器ID
     vessel_id, vessel_data = get_vessel(vessel)
+    filtrate_vessel_id, filtrate_vessel_data = get_vessel(filtrate_vessel)
     
     debug_print("🌊" * 20)
     debug_print("🚀 开始生成过滤协议（支持体积运算）✨")
@@ -103,7 +103,7 @@ def generate_filter_protocol(
     # 验证可选参数
     debug_print("  🔍 验证可选参数...")
     if filtrate_vessel:
-        validate_vessel(G, filtrate_vessel, "滤液容器")
+        validate_vessel(G, filtrate_vessel_id, "滤液容器")
         debug_print("  🌊 模式: 过滤并收集滤液 💧")
     else:
         debug_print("  🧱 模式: 过滤并收集固体 🔬")
@@ -213,7 +213,7 @@ def generate_filter_protocol(
     debug_print("  ⚙️ 构建过滤参数...")
     filter_kwargs = {
         "vessel": filter_device,  # 过滤器设备
-        "filtrate_vessel": filtrate_vessel,  # 滤液容器（可能为空）
+        "filtrate_vessel": filtrate_vessel_id,  # 滤液容器（可能为空）
         "stir": kwargs.get("stir", False),
         "stir_speed": kwargs.get("stir_speed", 0.0),
         "temp": kwargs.get("temp", 25.0),
@@ -245,7 +245,7 @@ def generate_filter_protocol(
     debug_print("📍 步骤5: 收集滤液... 💧")
     
     if filtrate_vessel:
-        debug_print(f"  🧪 收集滤液: {filter_device} → {filtrate_vessel} 💧")
+        debug_print(f"  🧪 收集滤液: {filter_device} → {filtrate_vessel_id} 💧")
         
         try:
             debug_print("  🔄 开始执行收集操作...")
@@ -274,20 +274,20 @@ def generate_filter_protocol(
                 debug_print("  🔧 更新滤液容器体积...")
                 
                 # 更新filtrate_vessel在图中的体积（如果它是节点）
-                if filtrate_vessel in G.nodes():
+                if filtrate_vessel_id in G.nodes():
-                    if 'data' not in G.nodes[filtrate_vessel]:
+                    if 'data' not in G.nodes[filtrate_vessel_id]:
-                        G.nodes[filtrate_vessel]['data'] = {}
+                        G.nodes[filtrate_vessel_id]['data'] = {}
                     
-                    current_filtrate_volume = G.nodes[filtrate_vessel]['data'].get('liquid_volume', 0.0)
+                    current_filtrate_volume = G.nodes[filtrate_vessel_id]['data'].get('liquid_volume', 0.0)
                     if isinstance(current_filtrate_volume, list):
                         if len(current_filtrate_volume) > 0:
-                            G.nodes[filtrate_vessel]['data']['liquid_volume'][0] += expected_filtrate_volume
+                            G.nodes[filtrate_vessel_id]['data']['liquid_volume'][0] += expected_filtrate_volume
                         else:
-                            G.nodes[filtrate_vessel]['data']['liquid_volume'] = [expected_filtrate_volume]
+                            G.nodes[filtrate_vessel_id]['data']['liquid_volume'] = [expected_filtrate_volume]
                     else:
-                        G.nodes[filtrate_vessel]['data']['liquid_volume'] = current_filtrate_volume + expected_filtrate_volume
+                        G.nodes[filtrate_vessel_id]['data']['liquid_volume'] = current_filtrate_volume + expected_filtrate_volume
                     
-                    debug_print(f"  📊 滤液容器 {filtrate_vessel} 体积增加 {expected_filtrate_volume:.2f}mL")
+                    debug_print(f"  📊 滤液容器 {filtrate_vessel_id} 体积增加 {expected_filtrate_volume:.2f}mL")
                 
             else:
                 debug_print("  ⚠️ 收集协议返回空序列 🤔")
@@ -352,7 +352,7 @@ def generate_filter_protocol(
     debug_print(f"📊 总动作数: {len(action_sequence)} 个 📝")
     debug_print(f"🥽 过滤容器: {vessel_id} 🧪")
     debug_print(f"🌊 过滤器设备: {filter_device} 🔧")
-    debug_print(f"💧 滤液容器: {filtrate_vessel or '无（保留固体）'} 🧱")
+    debug_print(f"💧 滤液容器: {filtrate_vessel_id or '无（保留固体）'} 🧱")
     debug_print(f"⏱️ 预计总时间: {(len(action_sequence) * 5):.0f} 秒 ⌛")
     if original_liquid_volume > 0:
         debug_print(f"📊 体积变化统计:")
@@ -364,4 +364,3 @@ def generate_filter_protocol(
     debug_print("🎊" * 20)
     
     return action_sequence
-

unilabos/compile/heatchill_protocol.py

@@ -3,81 +3,14 @@ import networkx as nx
 import logging
 import re
 from .utils.vessel_parser import get_vessel
+from .utils.unit_parser import parse_time_input
 
 logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """调试输出"""
-    print(f"🌡️ [HEATCHILL] {message}", flush=True)
     logger.info(f"[HEATCHILL] {message}")
 
-def parse_time_input(time_input: Union[str, float, int]) -> float:
-    """
-    解析时间输入（统一函数）
-    
-    Args:
-        time_input: 时间输入（如 "30 min", "1 h", "300", "?", 60.0）
-    
-    Returns:
-        float: 时间（秒）
-    """
-    if not time_input:
-        return 300.0
-    
-    # 🔢 处理数值输入
-    if isinstance(time_input, (int, float)):
-        result = float(time_input)
-        debug_print(f"⏰ 数值时间: {time_input} → {result}s")
-        return result
-    
-    # 📝 处理字符串输入
-    time_str = str(time_input).lower().strip()
-    debug_print(f"🔍 解析时间: '{time_str}'")
-    
-    # ❓ 特殊值处理
-    special_times = {
-        '?': 300.0, 'unknown': 300.0, 'tbd': 300.0,
-        'overnight': 43200.0, 'several hours': 10800.0, 
-        'few hours': 7200.0, 'long time': 3600.0, 'short time': 300.0
-    }
-    
-    if time_str in special_times:
-        result = special_times[time_str]
-        debug_print(f"🎯 特殊时间: '{time_str}' → {result}s ({result/60:.1f}分钟)")
-        return result
-    
-    # 🔢 纯数字处理
-    try:
-        result = float(time_str)
-        debug_print(f"⏰ 纯数字: {time_str} → {result}s")
-        return result
-    except ValueError:
-        pass
-    
-    # 📐 正则表达式解析
-    pattern = r'(\d+\.?\d*)\s*([a-z]*)'
-    match = re.match(pattern, time_str)
-    
-    if not match:
-        debug_print(f"⚠️ 无法解析时间: '{time_str}'，使用默认值: 300s")
-        return 300.0
-    
-    value = float(match.group(1))
-    unit = match.group(2) or 's'
-    
-    # 📏 单位转换
-    unit_multipliers = {
-        's': 1.0, 'sec': 1.0, 'second': 1.0, 'seconds': 1.0,
-        'm': 60.0, 'min': 60.0, 'mins': 60.0, 'minute': 60.0, 'minutes': 60.0,
-        'h': 3600.0, 'hr': 3600.0, 'hrs': 3600.0, 'hour': 3600.0, 'hours': 3600.0,
-        'd': 86400.0, 'day': 86400.0, 'days': 86400.0
-    }
-    
-    multiplier = unit_multipliers.get(unit, 1.0)
-    result = value * multiplier
-    
-    debug_print(f"✅ 时间解析: '{time_str}' → {value} {unit} → {result}s ({result/60:.1f}分钟)")
-    return result
 
 def parse_temp_input(temp_input: Union[str, float], default_temp: float = 25.0) -> float:
     """
@@ -287,7 +220,6 @@ def generate_heat_chill_protocol(
         "device_id": heatchill_id,
         "action_name": "heat_chill",
         "action_kwargs": {
-            "vessel": vessel_id,  # 🔧 使用 vessel_id
             "temp": float(final_temp),
             "time": float(final_time),
             "stir": bool(stir),
@@ -321,7 +253,7 @@ def generate_heat_chill_to_temp_protocol(
     **kwargs
 ) -> List[Dict[str, Any]]:
     """生成加热到指定温度的协议（简化版）"""
-    vessel_id = vessel["id"]
+    vessel_id, _ = get_vessel(vessel)
     debug_print(f"🌡️ 生成加热到温度协议: {vessel_id} → {temp}°C")
     return generate_heat_chill_protocol(G, vessel, temp, time, **kwargs)
 
@@ -335,7 +267,7 @@ def generate_heat_chill_start_protocol(
     """生成开始加热操作的协议序列"""
     
     # 🔧 核心修改：从字典中提取容器ID
-    vessel_id = vessel["id"]
+    vessel_id, _ = get_vessel(vessel)
     
     debug_print("🔥 开始生成启动加热协议 ✨")
     debug_print(f"🥽 vessel: {vessel} (ID: {vessel_id}), 🌡️ temp: {temp}°C")
@@ -353,7 +285,6 @@ def generate_heat_chill_start_protocol(
         "device_id": heatchill_id,
         "action_name": "heat_chill_start",
         "action_kwargs": {
-            "vessel": vessel_id,  # 🔧 使用 vessel_id
             "temp": temp,
             "purpose": purpose or f"开始加热到 {temp}°C"
         }
@@ -370,7 +301,7 @@ def generate_heat_chill_stop_protocol(
     """生成停止加热操作的协议序列"""
     
     # 🔧 核心修改：从字典中提取容器ID
-    vessel_id = vessel["id"]
+    vessel_id, _ = get_vessel(vessel)
     
     debug_print("🛑 开始生成停止加热协议 ✨")
     debug_print(f"🥽 vessel: {vessel} (ID: {vessel_id})")
@@ -388,10 +319,8 @@ def generate_heat_chill_stop_protocol(
         "device_id": heatchill_id,
         "action_name": "heat_chill_stop",
         "action_kwargs": {
-            "vessel": vessel_id  # 🔧 使用 vessel_id
         }
     }]
     
     debug_print(f"✅ 停止加热协议生成完成 🎯")
     return action_sequence
-

unilabos/compile/pump_protocol.py

@@ -10,11 +10,7 @@ logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """强制输出调试信息"""
-    timestamp = time_module.strftime("%H:%M:%S")
+    output = f"[TRANSFER] {message}"
-    output = f"[{timestamp}] {message}"
-    print(output, flush=True)
-    sys.stdout.flush()
-    # 同时写入日志
     logger.info(output)
 
 def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:

unilabos/compile/recrystallize_protocol.py

@@ -3,91 +3,16 @@ import re
 import logging
 from typing import List, Dict, Any, Tuple, Union
 from .utils.vessel_parser import get_vessel
+from .utils.unit_parser import parse_volume_input
 from .pump_protocol import generate_pump_protocol_with_rinsing
 
 logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """调试输出"""
-    print(f"💎 [RECRYSTALLIZE] {message}", flush=True)
     logger.info(f"[RECRYSTALLIZE] {message}")
 
 
-def parse_volume_with_units(volume_input: Union[str, float, int], default_unit: str = "mL") -> float:
-    """
-    解析带单位的体积输入
-    
-    Args:
-        volume_input: 体积输入（如 "100 mL", "2.5 L", "500", "?", 100.0）
-        default_unit: 默认单位（默认为毫升）
-    
-    Returns:
-        float: 体积（毫升）
-    """
-    if not volume_input:
-        debug_print("⚠️ 体积输入为空，返回 0.0mL 📦")
-        return 0.0
-    
-    # 处理数值输入
-    if isinstance(volume_input, (int, float)):
-        result = float(volume_input)
-        debug_print(f"🔢 数值体积输入: {volume_input} → {result}mL（默认单位）💧")
-        return result
-    
-    # 处理字符串输入
-    volume_str = str(volume_input).lower().strip()
-    debug_print(f"🔍 解析体积字符串: '{volume_str}' 📝")
-    
-    # 处理特殊值
-    if volume_str in ['?', 'unknown', 'tbd', 'to be determined']:
-        default_volume = 50.0  # 50mL默认值
-        debug_print(f"❓ 检测到未知体积，使用默认值: {default_volume}mL 🎯")
-        return default_volume
-    
-    # 如果是纯数字，使用默认单位
-    try:
-        value = float(volume_str)
-        if default_unit.lower() in ["ml", "milliliter"]:
-            result = value
-        elif default_unit.lower() in ["l", "liter"]:
-            result = value * 1000.0
-        elif default_unit.lower() in ["μl", "ul", "microliter"]:
-            result = value / 1000.0
-        else:
-            result = value  # 默认mL
-        debug_print(f"🔢 纯数字输入: {volume_str} → {result}mL（单位: {default_unit}）📏")
-        return result
-    except ValueError:
-        pass
-    
-    # 移除空格并提取数字和单位
-    volume_clean = re.sub(r'\s+', '', volume_str)
-    
-    # 匹配数字和单位的正则表达式
-    match = re.match(r'([0-9]*\.?[0-9]+)\s*(ml|l|μl|ul|microliter|milliliter|liter)?', volume_clean)
-    
-    if not match:
-        debug_print(f"⚠️ 无法解析体积: '{volume_str}'，使用默认值: 50mL 🎯")
-        return 50.0
-    
-    value = float(match.group(1))
-    unit = match.group(2) or default_unit.lower()
-    
-    # 转换为毫升
-    if unit in ['l', 'liter']:
-        volume = value * 1000.0  # L -> mL
-        debug_print(f"📏 升转毫升: {value}L → {volume}mL 💧")
-    elif unit in ['μl', 'ul', 'microliter']:
-        volume = value / 1000.0  # μL -> mL
-        debug_print(f"📏 微升转毫升: {value}μL → {volume}mL 💧")
-    else:  # ml, milliliter 或默认
-        volume = value  # 已经是mL
-        debug_print(f"📏 毫升单位: {value}mL → {volume}mL 💧")
-    
-    debug_print(f"✅ 体积解析完成: '{volume_str}' → {volume}mL ✨")
-    return volume
-
-
 def parse_ratio(ratio_str: str) -> Tuple[float, float]:
     """
     解析比例字符串，支持多种格式
@@ -137,131 +62,6 @@ def parse_ratio(ratio_str: str) -> Tuple[float, float]:
         return 1.0, 1.0
 
 
-def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
-    """
-    查找溶剂容器
-    
-    Args:
-        G: 网络图
-        solvent: 溶剂名称
-    
-    Returns:
-        str: 溶剂容器ID
-    """
-    debug_print(f"🔍 正在查找溶剂 '{solvent}' 的容器... 🧪")
-    
-    # 构建可能的容器名称
-    possible_names = [
-        f"flask_{solvent}",
-        f"bottle_{solvent}",
-        f"reagent_{solvent}",
-        f"reagent_bottle_{solvent}",
-        f"{solvent}_flask",
-        f"{solvent}_bottle",
-        f"{solvent}",
-        f"vessel_{solvent}",
-    ]
-    
-    debug_print(f"📋 候选容器名称: {possible_names[:3]}... (共{len(possible_names)}个) 📝")
-    
-    # 第一步：通过容器名称匹配
-    debug_print("  🎯 步骤1: 精确名称匹配...")
-    for vessel_name in possible_names:
-        if vessel_name in G.nodes():
-            debug_print(f"  🎉 通过名称匹配找到容器: {vessel_name} ✨")
-            return vessel_name
-    
-    # 第二步：通过模糊匹配（节点ID和名称）
-    debug_print("  🔍 步骤2: 模糊名称匹配...")
-    for node_id in G.nodes():
-        if G.nodes[node_id].get('type') == 'container':
-            node_name = G.nodes[node_id].get('name', '').lower()
-            
-            if solvent.lower() in node_id.lower() or solvent.lower() in node_name:
-                debug_print(f"  🎉 通过模糊匹配找到容器: {node_id} (名称: {node_name}) ✨")
-                return node_id
-    
-    # 第三步：通过配置中的试剂信息匹配
-    debug_print("  🧪 步骤3: 配置试剂信息匹配...")
-    for node_id in G.nodes():
-        if G.nodes[node_id].get('type') == 'container':
-            # 检查 config 中的 reagent 字段
-            node_config = G.nodes[node_id].get('config', {})
-            config_reagent = node_config.get('reagent', '').lower()
-            
-            if config_reagent and solvent.lower() == config_reagent:
-                debug_print(f"  🎉 通过config.reagent匹配找到容器: {node_id} (试剂: {config_reagent}) ✨")
-                return node_id
-    
-    # 第四步：通过数据中的试剂信息匹配
-    debug_print("  🧪 步骤4: 数据试剂信息匹配...")
-    for node_id in G.nodes():
-        if G.nodes[node_id].get('type') == 'container':
-            vessel_data = G.nodes[node_id].get('data', {})
-            
-            # 检查 data 中的 reagent_name 字段
-            reagent_name = vessel_data.get('reagent_name', '').lower()
-            if reagent_name and solvent.lower() == reagent_name:
-                debug_print(f"  🎉 通过data.reagent_name匹配找到容器: {node_id} (试剂: {reagent_name}) ✨")
-                return node_id
-            
-            # 检查 data 中的液体信息
-            liquids = vessel_data.get('liquid', [])
-            for liquid in liquids:
-                if isinstance(liquid, dict):
-                    liquid_type = (liquid.get('liquid_type') or liquid.get('name', '')).lower()
-                    
-                    if solvent.lower() in liquid_type:
-                        debug_print(f"  🎉 通过液体类型匹配找到容器: {node_id} (液体类型: {liquid_type}) ✨")
-                        return node_id
-    
-    # 第五步：部分匹配（如果前面都没找到）
-    debug_print("  🔍 步骤5: 部分匹配...")
-    for node_id in G.nodes():
-        if G.nodes[node_id].get('type') == 'container':
-            node_config = G.nodes[node_id].get('config', {})
-            node_data = G.nodes[node_id].get('data', {})
-            node_name = G.nodes[node_id].get('name', '').lower()
-            
-            config_reagent = node_config.get('reagent', '').lower()
-            data_reagent = node_data.get('reagent_name', '').lower()
-            
-            # 检查是否包含溶剂名称
-            if (solvent.lower() in config_reagent or 
-                solvent.lower() in data_reagent or 
-                solvent.lower() in node_name or
-                solvent.lower() in node_id.lower()):
-                debug_print(f"  🎉 通过部分匹配找到容器: {node_id} ✨")
-                debug_print(f"    - 节点名称: {node_name}")
-                debug_print(f"    - 配置试剂: {config_reagent}")
-                debug_print(f"    - 数据试剂: {data_reagent}")
-                return node_id
-    
-    # 调试信息：列出所有容器
-    debug_print("  🔎 调试信息：列出所有容器...")
-    container_list = []
-    for node_id in G.nodes():
-        if G.nodes[node_id].get('type') == 'container':
-            node_config = G.nodes[node_id].get('config', {})
-            node_data = G.nodes[node_id].get('data', {})
-            node_name = G.nodes[node_id].get('name', '')
-            
-            container_info = {
-                'id': node_id,
-                'name': node_name,
-                'config_reagent': node_config.get('reagent', ''),
-                'data_reagent': node_data.get('reagent_name', '')
-            }
-            container_list.append(container_info)
-            debug_print(f"    - 容器: {node_id}, 名称: {node_name}, config试剂: {node_config.get('reagent', '')}, data试剂: {node_data.get('reagent_name', '')}")
-    
-    debug_print(f"❌ 找不到溶剂 '{solvent}' 对应的容器 😭")
-    debug_print(f"🔍 查找的溶剂: '{solvent}' (小写: '{solvent.lower()}')")
-    debug_print(f"📊 总共发现 {len(container_list)} 个容器")
-    
-    raise ValueError(f"找不到溶剂 '{solvent}' 对应的容器")
-
-
 def generate_recrystallize_protocol(
     G: nx.DiGraph,
     vessel: dict,  # 🔧 修改：从字符串改为字典类型
@@ -322,7 +122,7 @@ def generate_recrystallize_protocol(
     
     # 2. 解析体积（支持单位）
     debug_print("📍 步骤2: 解析体积（支持单位）... 💧")
-    final_volume = parse_volume_with_units(volume, "mL")
+    final_volume = parse_volume_input(volume, "mL")
     debug_print(f"🎯 体积解析完成: {volume} → {final_volume}mL ✨")
     
     # 3. 解析比例
@@ -574,7 +374,7 @@ def test_recrystallize_protocol():
     debug_print("💧 测试体积解析...")
     test_volumes = ["100 mL", "2.5 L", "500", "50.5", "?", "invalid"]
     for vol in test_volumes:
-        parsed = parse_volume_with_units(vol)
+        parsed = parse_volume_input(vol)
         debug_print(f"  📊 体积 '{vol}' -> {parsed}mL")
     
     # 测试比例解析

unilabos/compile/run_column_protocol.py

@@ -8,7 +8,6 @@ logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """调试输出"""
-    print(f"🏛️ [RUN_COLUMN] {message}", flush=True)
     logger.info(f"[RUN_COLUMN] {message}")
 
 def parse_percentage(pct_str: str) -> float:

unilabos/compile/separate_protocol.py

@@ -1,9 +1,12 @@
+from functools import partial
+
 import networkx as nx
 import re
 import logging
 import sys
 from typing import List, Dict, Any, Union
 from .utils.vessel_parser import get_vessel
+from .utils.logger_util import action_log
 from .pump_protocol import generate_pump_protocol_with_rinsing
 
 logger = logging.getLogger(__name__)
@@ -21,48 +24,17 @@ def debug_print(message):
     try:
         # 确保消息是字符串格式
         safe_message = str(message)
-        print(f"🌀 [SEPARATE] {safe_message}", flush=True)
         logger.info(f"[SEPARATE] {safe_message}")
     except UnicodeEncodeError:
         # 如果编码失败，尝试替换不支持的字符
         safe_message = str(message).encode('utf-8', errors='replace').decode('utf-8')
-        print(f"🌀 [SEPARATE] {safe_message}", flush=True)
         logger.info(f"[SEPARATE] {safe_message}")
     except Exception as e:
         # 最后的安全措施
         fallback_message = f"日志输出错误: {repr(message)}"
-        print(f"🌀 [SEPARATE] {fallback_message}", flush=True)
         logger.info(f"[SEPARATE] {fallback_message}")
 
-def create_action_log(message: str, emoji: str = "📝") -> Dict[str, Any]:
+create_action_log = partial(action_log, prefix="[SEPARATE]")
-    """创建一个动作日志 - 支持中文和emoji"""
-    try:
-        full_message = f"{emoji} {message}"
-        debug_print(full_message)
-        logger.info(full_message)
-        
-        return {
-            "action_name": "wait",
-            "action_kwargs": {
-                "time": 0.1,
-                "log_message": full_message,
-                "progress_message": full_message
-            }
-        }
-    except Exception as e:
-        # 如果emoji有问题，使用纯文本
-        safe_message = f"[日志] {message}"
-        debug_print(safe_message)
-        logger.info(safe_message)
-        
-        return {
-            "action_name": "wait", 
-            "action_kwargs": {
-                "time": 0.1,
-                "log_message": safe_message,
-                "progress_message": safe_message
-            }
-        }
 
 
 def generate_separate_protocol(

unilabos/compile/stir_protocol.py

@@ -3,81 +3,14 @@ import networkx as nx
 import logging
 import re
 
+from .utils.unit_parser import parse_time_input
+
 logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """调试输出"""
-    print(f"🌪️ [STIR] {message}", flush=True)
     logger.info(f"[STIR] {message}")
 
-def parse_time_input(time_input: Union[str, float, int], default_unit: str = "s") -> float:
-    """
-    统一的时间解析函数（精简版）
-    
-    Args:
-        time_input: 时间输入（如 "30 min", "1 h", "300", "?", 60.0）
-        default_unit: 默认单位（默认为秒）
-    
-    Returns:
-        float: 时间（秒）
-    """
-    if not time_input:
-        return 100.0  # 默认100秒
-    
-    # 🔢 处理数值输入
-    if isinstance(time_input, (int, float)):
-        result = float(time_input)
-        debug_print(f"⏰ 数值时间: {time_input} → {result}s")
-        return result
-    
-    # 📝 处理字符串输入
-    time_str = str(time_input).lower().strip()
-    debug_print(f"🔍 解析时间: '{time_str}'")
-    
-    # ❓ 特殊值处理
-    special_times = {
-        '?': 300.0, 'unknown': 300.0, 'tbd': 300.0,
-        'briefly': 30.0, 'quickly': 60.0, 'slowly': 600.0,
-        'several minutes': 300.0, 'few minutes': 180.0, 'overnight': 3600.0
-    }
-    
-    if time_str in special_times:
-        result = special_times[time_str]
-        debug_print(f"🎯 特殊时间: '{time_str}' → {result}s ({result/60:.1f}分钟)")
-        return result
-    
-    # 🔢 纯数字处理
-    try:
-        result = float(time_str)
-        debug_print(f"⏰ 纯数字: {time_str} → {result}s")
-        return result
-    except ValueError:
-        pass
-    
-    # 📐 正则表达式解析
-    pattern = r'(\d+\.?\d*)\s*([a-z]*)'
-    match = re.match(pattern, time_str)
-    
-    if not match:
-        debug_print(f"⚠️ 无法解析时间: '{time_str}'，使用默认值: 100s")
-        return 100.0
-    
-    value = float(match.group(1))
-    unit = match.group(2) or default_unit
-    
-    # 📏 单位转换
-    unit_multipliers = {
-        's': 1.0, 'sec': 1.0, 'second': 1.0, 'seconds': 1.0,
-        'm': 60.0, 'min': 60.0, 'mins': 60.0, 'minute': 60.0, 'minutes': 60.0,
-        'h': 3600.0, 'hr': 3600.0, 'hrs': 3600.0, 'hour': 3600.0, 'hours': 3600.0,
-        'd': 86400.0, 'day': 86400.0, 'days': 86400.0
-    }
-    
-    multiplier = unit_multipliers.get(unit, 1.0)
-    result = value * multiplier
-    
-    debug_print(f"✅ 时间解析: '{time_str}' → {value} {unit} → {result}s ({result/60:.1f}分钟)")
-    return result
 
 def find_connected_stirrer(G: nx.DiGraph, vessel: str = None) -> str:
     """查找与指定容器相连的搅拌设备"""

unilabos/compile/transfer_protocol.py

@@ -1,79 +0,0 @@
-from typing import List, Dict, Any
-import networkx as nx
-
-def generate_transfer_protocol(
-    G: nx.DiGraph,
-    from_vessel: str,
-    to_vessel: str,
-    volume: float,
-    amount: str = "",
-    time: float = 0,
-    viscous: bool = False,
-    rinsing_solvent: str = "",
-    rinsing_volume: float = 0.0,
-    rinsing_repeats: int = 0,
-    solid: bool = False
-) -> List[Dict[str, Any]]:
-    """
-    生成液体转移操作的协议序列
-    
-    Args:
-        G: 有向图，节点为设备和容器
-        from_vessel: 源容器
-        to_vessel: 目标容器
-        volume: 转移体积 (mL)
-        amount: 数量描述 (可选)
-        time: 转移时间 (秒，可选)
-        viscous: 是否为粘性液体
-        rinsing_solvent: 冲洗溶剂 (可选)
-        rinsing_volume: 冲洗体积 (mL，可选)
-        rinsing_repeats: 冲洗重复次数
-        solid: 是否涉及固体
-    
-    Returns:
-        List[Dict[str, Any]]: 转移操作的动作序列
-    
-    Raises:
-        ValueError: 当找不到合适的转移设备时抛出异常
-    
-    Examples:
-        transfer_protocol = generate_transfer_protocol(G, "flask_1", "reactor", 10.0)
-    """
-    action_sequence = []
-    
-    # 查找虚拟转移泵设备用于液体转移 - 修复：应该查找 virtual_transfer_pump
-    pump_nodes = [node for node in G.nodes() 
-                  if G.nodes[node].get('class') == 'virtual_transfer_pump']
-    
-    if not pump_nodes:
-        raise ValueError("没有找到可用的转移泵设备进行液体转移")
-    
-    # 使用第一个可用的泵
-    pump_id = pump_nodes[0]
-    
-    # 验证容器是否存在
-    if from_vessel not in G.nodes():
-        raise ValueError(f"源容器 {from_vessel} 不存在于图中")
-    
-    if to_vessel not in G.nodes():
-        raise ValueError(f"目标容器 {to_vessel} 不存在于图中")
-    
-    # 执行液体转移操作 - 参数完全匹配Transfer.action
-    action_sequence.append({
-        "device_id": pump_id,
-        "action_name": "transfer",
-        "action_kwargs": {
-            "from_vessel": from_vessel,
-            "to_vessel": to_vessel,
-            "volume": volume,
-            "amount": amount,
-            "time": time,
-            "viscous": viscous,
-            "rinsing_solvent": rinsing_solvent,
-            "rinsing_volume": rinsing_volume,
-            "rinsing_repeats": rinsing_repeats,
-            "solid": solid
-        }
-    })
-    
-    return action_sequence

unilabos/compile/utils/logger_util.py

@@ -0,0 +1,36 @@
+# 🆕 创建进度日志动作
+import logging
+from typing import Dict, Any
+
+logger = logging.getLogger(__name__)
+
+def debug_print(message, prefix="[UNIT_PARSER]"):
+    """调试输出"""
+    logger.info(f"{prefix} {message}")
+
+
+def action_log(message: str, emoji: str = "📝", prefix="[HIGH-LEVEL OPERATION]") -> Dict[str, Any]:
+    """创建一个动作日志 - 支持中文和emoji"""
+    try:
+        full_message = f"{prefix} {emoji} {message}"
+
+        return {
+            "action_name": "wait",
+            "action_kwargs": {
+                "time": 0.1,
+                "log_message": full_message,
+                "progress_message": full_message
+            }
+        }
+    except Exception as e:
+        # 如果emoji有问题，使用纯文本
+        safe_message = f"{prefix} {message}"
+
+        return {
+            "action_name": "wait",
+            "action_kwargs": {
+                "time": 0.1,
+                "log_message": safe_message,
+                "progress_message": safe_message
+            }
+        }

unilabos/compile/utils/unit_parser.py

@@ -4,108 +4,12 @@
 """
 
 import re
-import logging
 from typing import Union
 
-logger = logging.getLogger(__name__)
+from .logger_util import debug_print
 
-def debug_print(message, prefix="[UNIT_PARSER]"):
-    """调试输出"""
-    print(f"{prefix} {message}", flush=True)
-    logger.info(f"{prefix} {message}")
 
-def parse_time_with_units(time_input: Union[str, float, int], default_unit: str = "s") -> float:
+def parse_volume_input(volume_input: Union[str, float, int], default_unit: str = "mL") -> float:
-    """
-    解析带单位的时间输入
-    
-    Args:
-        time_input: 时间输入（如 "30 min", "1 h", "300", "?", 60.0）
-        default_unit: 默认单位（默认为秒）
-    
-    Returns:
-        float: 时间（秒）
-    """
-    if not time_input:
-        return 0.0
-    
-    # 处理数值输入
-    if isinstance(time_input, (int, float)):
-        result = float(time_input)
-        debug_print(f"数值时间输入: {time_input} → {result}s（默认单位）")
-        return result
-    
-    # 处理字符串输入
-    time_str = str(time_input).lower().strip()
-    debug_print(f"解析时间字符串: '{time_str}'")
-    
-    # 处理特殊值
-    if time_str in ['?', 'unknown', 'tbd', 'to be determined']:
-        default_time = 300.0  # 5分钟默认值
-        debug_print(f"检测到未知时间，使用默认值: {default_time}s")
-        return default_time
-    
-    # 如果是纯数字，使用默认单位
-    try:
-        value = float(time_str)
-        if default_unit == "s":
-            result = value
-        elif default_unit in ["min", "minute"]:
-            result = value * 60.0
-        elif default_unit in ["h", "hour"]:
-            result = value * 3600.0
-        else:
-            result = value  # 默认秒
-        debug_print(f"纯数字输入: {time_str} → {result}s（单位: {default_unit}）")
-        return result
-    except ValueError:
-        pass
-    
-    # 使用正则表达式匹配数字和单位
-    pattern = r'(\d+\.?\d*)\s*([a-z]*)'
-    match = re.match(pattern, time_str)
-    
-    if not match:
-        debug_print(f"⚠️ 无法解析时间: '{time_str}'，使用默认值: 60s")
-        return 60.0
-    
-    value = float(match.group(1))
-    unit = match.group(2) or default_unit
-    
-    # 单位转换映射
-    unit_multipliers = {
-        # 秒
-        's': 1.0,
-        'sec': 1.0,
-        'second': 1.0,
-        'seconds': 1.0,
-        
-        # 分钟
-        'm': 60.0,
-        'min': 60.0,
-        'mins': 60.0,
-        'minute': 60.0,
-        'minutes': 60.0,
-        
-        # 小时
-        'h': 3600.0,
-        'hr': 3600.0,
-        'hrs': 3600.0,
-        'hour': 3600.0,
-        'hours': 3600.0,
-        
-        # 天
-        'd': 86400.0,
-        'day': 86400.0,
-        'days': 86400.0,
-    }
-    
-    multiplier = unit_multipliers.get(unit, 1.0)
-    result = value * multiplier
-    
-    debug_print(f"时间解析: '{time_str}' → {value} {unit} → {result}s")
-    return result
-
-def parse_volume_with_units(volume_input: Union[str, float, int], default_unit: str = "mL") -> float:
     """
     解析带单位的体积输入
     
@@ -175,6 +79,111 @@ def parse_volume_with_units(volume_input: Union[str, float, int], default_unit:
     debug_print(f"体积解析: '{volume_str}' → {value} {unit} → {volume}mL")
     return volume
 
+
+def parse_mass_input(mass_input: Union[str, float]) -> float:
+    """
+    解析质量输入，支持带单位的字符串
+
+    Args:
+        mass_input: 质量输入（如 "19.3 g", "4.5 g", 2.5）
+
+    Returns:
+        float: 质量（克）
+    """
+    if isinstance(mass_input, (int, float)):
+        debug_print(f"⚖️ 质量输入为数值: {mass_input}g")
+        return float(mass_input)
+
+    if not mass_input or not str(mass_input).strip():
+        debug_print(f"⚠️ 质量输入为空，返回0.0g")
+        return 0.0
+
+    mass_str = str(mass_input).lower().strip()
+    debug_print(f"🔍 解析质量输入: '{mass_str}'")
+
+    # 移除空格并提取数字和单位
+    mass_clean = re.sub(r'\s+', '', mass_str)
+
+    # 匹配数字和单位的正则表达式
+    match = re.match(r'([0-9]*\.?[0-9]+)\s*(g|mg|kg|gram|milligram|kilogram)?', mass_clean)
+
+    if not match:
+        debug_print(f"❌ 无法解析质量: '{mass_str}'，返回0.0g")
+        return 0.0
+
+    value = float(match.group(1))
+    unit = match.group(2) or 'g'  # 默认单位为克
+
+    # 转换为克
+    if unit in ['mg', 'milligram']:
+        mass = value / 1000.0  # mg -> g
+        debug_print(f"🔄 质量转换: {value}mg → {mass}g")
+    elif unit in ['kg', 'kilogram']:
+        mass = value * 1000.0  # kg -> g
+        debug_print(f"🔄 质量转换: {value}kg → {mass}g")
+    else:  # g, gram 或默认
+        mass = value  # 已经是g
+        debug_print(f"✅ 质量已为g: {mass}g")
+
+    return mass
+
+
+def parse_time_input(time_input: Union[str, float]) -> float:
+    """
+    解析时间输入，支持带单位的字符串
+
+    Args:
+        time_input: 时间输入（如 "1 h", "20 min", "30 s", 60.0）
+
+    Returns:
+        float: 时间（秒）
+    """
+    if isinstance(time_input, (int, float)):
+        debug_print(f"⏱️ 时间输入为数值: {time_input}秒")
+        return float(time_input)
+
+    if not time_input or not str(time_input).strip():
+        debug_print(f"⚠️ 时间输入为空，返回0秒")
+        return 0.0
+
+    time_str = str(time_input).lower().strip()
+    debug_print(f"🔍 解析时间输入: '{time_str}'")
+
+    # 处理未知时间
+    if time_str in ['?', 'unknown', 'tbd']:
+        default_time = 60.0  # 默认1分钟
+        debug_print(f"❓ 检测到未知时间，使用默认值: {default_time}s (1分钟) ⏰")
+        return default_time
+
+    # 移除空格并提取数字和单位
+    time_clean = re.sub(r'\s+', '', time_str)
+
+    # 匹配数字和单位的正则表达式
+    match = re.match(r'([0-9]*\.?[0-9]+)\s*(s|sec|second|min|minute|h|hr|hour|d|day)?', time_clean)
+
+    if not match:
+        debug_print(f"❌ 无法解析时间: '{time_str}'，返回0s")
+        return 0.0
+
+    value = float(match.group(1))
+    unit = match.group(2) or 's'  # 默认单位为秒
+
+    # 转换为秒
+    if unit in ['m', 'min', 'minute', 'mins', 'minutes']:
+        time_sec = value * 60.0  # min -> s
+        debug_print(f"🔄 时间转换: {value}分钟 → {time_sec}秒")
+    elif unit in ['h', 'hr', 'hour', 'hrs', 'hours']:
+        time_sec = value * 3600.0  # h -> s
+        debug_print(f"🔄 时间转换: {value}小时 → {time_sec}秒")
+    elif unit in ['d', 'day', 'days']:
+        time_sec = value * 86400.0  # d -> s
+        debug_print(f"🔄 时间转换: {value}天 → {time_sec}秒")
+    else:  # s, sec, second 或默认
+        time_sec = value  # 已经是s
+        debug_print(f"✅ 时间已为秒: {time_sec}秒")
+
+    return time_sec
+
 # 测试函数
 def test_unit_parser():
     """测试单位解析功能"""
@@ -187,7 +196,7 @@ def test_unit_parser():
     
     print("\n时间解析测试:")
     for time_input in time_tests:
-        result = parse_time_with_units(time_input)
+        result = parse_time_input(time_input)
         print(f"  {time_input} → {result}s ({result/60:.1f}min)")
     
     # 测试体积解析
@@ -197,7 +206,7 @@ def test_unit_parser():
     
     print("\n体积解析测试:")
     for volume_input in volume_tests:
-        result = parse_volume_with_units(volume_input)
+        result = parse_volume_input(volume_input)
         print(f"  {volume_input} → {result}mL")
     
     print("\n✅ 测试完成")

unilabos/compile/utils/vessel_parser.py

@@ -1,3 +1,8 @@
+import networkx as nx
+
+from .logger_util import debug_print
+
+
 def get_vessel(vessel):
     """
     统一处理vessel参数，返回vessel_id和vessel_data。
@@ -18,3 +23,258 @@ def get_vessel(vessel):
         vessel_id = str(vessel)
         vessel_data = {}
     return vessel_id, vessel_data
+
+
+def find_reagent_vessel(G: nx.DiGraph, reagent: str) -> str:
+    """增强版试剂容器查找，支持固体和液体"""
+    debug_print(f"🔍 开始查找试剂 '{reagent}' 的容器...")
+
+    # 🔧 方法1：直接搜索 data.reagent_name 和 config.reagent
+    debug_print(f"📋 方法1: 搜索reagent字段...")
+    for node in G.nodes():
+        node_data = G.nodes[node].get('data', {})
+        node_type = G.nodes[node].get('type', '')
+        config_data = G.nodes[node].get('config', {})
+
+        # 只搜索容器类型的节点
+        if node_type == 'container':
+            reagent_name = node_data.get('reagent_name', '').lower()
+            config_reagent = config_data.get('reagent', '').lower()
+
+            # 精确匹配
+            if reagent_name == reagent.lower() or config_reagent == reagent.lower():
+                debug_print(f"✅ 通过reagent字段精确匹配到容器: {node} 🎯")
+                return node
+
+            # 模糊匹配
+            if (reagent.lower() in reagent_name and reagent_name) or \
+                    (reagent.lower() in config_reagent and config_reagent):
+                debug_print(f"✅ 通过reagent字段模糊匹配到容器: {node} 🔍")
+                return node
+
+    # 🔧 方法2：常见的容器命名规则
+    debug_print(f"📋 方法2: 使用命名规则查找...")
+    reagent_clean = reagent.lower().replace(' ', '_').replace('-', '_')
+    possible_names = [
+        reagent_clean,
+        f"flask_{reagent_clean}",
+        f"bottle_{reagent_clean}",
+        f"vessel_{reagent_clean}",
+        f"{reagent_clean}_flask",
+        f"{reagent_clean}_bottle",
+        f"reagent_{reagent_clean}",
+        f"reagent_bottle_{reagent_clean}",
+        f"solid_reagent_bottle_{reagent_clean}",
+        f"reagent_bottle_1",  # 通用试剂瓶
+        f"reagent_bottle_2",
+        f"reagent_bottle_3"
+    ]
+
+    debug_print(f"🔍 尝试的容器名称: {possible_names[:5]}... (共{len(possible_names)}个)")
+
+    for name in possible_names:
+        if name in G.nodes():
+            node_type = G.nodes[name].get('type', '')
+            if node_type == 'container':
+                debug_print(f"✅ 通过命名规则找到容器: {name} 📝")
+                return name
+
+    # 🔧 方法3：节点名称模糊匹配
+    debug_print(f"📋 方法3: 节点名称模糊匹配...")
+    for node_id in G.nodes():
+        node_data = G.nodes[node_id]
+        if node_data.get('type') == 'container':
+            # 检查节点名称是否包含试剂名称
+            if reagent_clean in node_id.lower():
+                debug_print(f"✅ 通过节点名称模糊匹配到容器: {node_id} 🔍")
+                return node_id
+
+            # 检查液体类型匹配
+            vessel_data = node_data.get('data', {})
+            liquids = vessel_data.get('liquid', [])
+            for liquid in liquids:
+                if isinstance(liquid, dict):
+                    liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
+                    if liquid_type.lower() == reagent.lower():
+                        debug_print(f"✅ 通过液体类型匹配到容器: {node_id} 💧")
+                        return node_id
+
+    # 🔧 方法4：使用第一个试剂瓶作为备选
+    debug_print(f"📋 方法4: 查找备选试剂瓶...")
+    for node_id in G.nodes():
+        node_data = G.nodes[node_id]
+        if (node_data.get('type') == 'container' and
+                ('reagent' in node_id.lower() or 'bottle' in node_id.lower())):
+            debug_print(f"⚠️ 未找到专用容器，使用备选试剂瓶: {node_id} 🔄")
+            return node_id
+
+    debug_print(f"❌ 所有方法都失败了，无法找到容器!")
+    raise ValueError(f"找不到试剂 '{reagent}' 对应的容器")
+
+
+def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
+    """
+    查找溶剂容器
+
+    Args:
+        G: 网络图
+        solvent: 溶剂名称
+
+    Returns:
+        str: 溶剂容器ID
+    """
+    debug_print(f"🔍 正在查找溶剂 '{solvent}' 的容器... 🧪")
+
+    # 构建可能的容器名称
+    possible_names = [
+        f"flask_{solvent}",
+        f"bottle_{solvent}",
+        f"reagent_{solvent}",
+        f"reagent_bottle_{solvent}",
+        f"{solvent}_flask",
+        f"{solvent}_bottle",
+        f"{solvent}",
+        f"vessel_{solvent}",
+    ]
+
+    debug_print(f"📋 候选容器名称: {possible_names[:3]}... (共{len(possible_names)}个) 📝")
+
+    # 第一步：通过容器名称匹配
+    debug_print("  🎯 步骤1: 精确名称匹配...")
+    for vessel_name in possible_names:
+        if vessel_name in G.nodes():
+            debug_print(f"  🎉 通过名称匹配找到容器: {vessel_name} ✨")
+            return vessel_name
+
+    # 第二步：通过模糊匹配（节点ID和名称）
+    debug_print("  🔍 步骤2: 模糊名称匹配...")
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            node_name = G.nodes[node_id].get('name', '').lower()
+
+            if solvent.lower() in node_id.lower() or solvent.lower() in node_name:
+                debug_print(f"  🎉 通过模糊匹配找到容器: {node_id} (名称: {node_name}) ✨")
+                return node_id
+
+    # 第三步：通过配置中的试剂信息匹配
+    debug_print("  🧪 步骤3: 配置试剂信息匹配...")
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            # 检查 config 中的 reagent 字段
+            node_config = G.nodes[node_id].get('config', {})
+            config_reagent = node_config.get('reagent', '').lower()
+
+            if config_reagent and solvent.lower() == config_reagent:
+                debug_print(f"  🎉 通过config.reagent匹配找到容器: {node_id} (试剂: {config_reagent}) ✨")
+                return node_id
+
+    # 第四步：通过数据中的试剂信息匹配
+    debug_print("  🧪 步骤4: 数据试剂信息匹配...")
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            vessel_data = G.nodes[node_id].get('data', {})
+
+            # 检查 data 中的 reagent_name 字段
+            reagent_name = vessel_data.get('reagent_name', '').lower()
+            if reagent_name and solvent.lower() == reagent_name:
+                debug_print(f"  🎉 通过data.reagent_name匹配找到容器: {node_id} (试剂: {reagent_name}) ✨")
+                return node_id
+
+            # 检查 data 中的液体信息
+            liquids = vessel_data.get('liquid', [])
+            for liquid in liquids:
+                if isinstance(liquid, dict):
+                    liquid_type = (liquid.get('liquid_type') or liquid.get('name', '')).lower()
+
+                    if solvent.lower() in liquid_type:
+                        debug_print(f"  🎉 通过液体类型匹配找到容器: {node_id} (液体类型: {liquid_type}) ✨")
+                        return node_id
+
+    # 第五步：部分匹配（如果前面都没找到）
+    debug_print("  🔍 步骤5: 部分匹配...")
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            node_config = G.nodes[node_id].get('config', {})
+            node_data = G.nodes[node_id].get('data', {})
+            node_name = G.nodes[node_id].get('name', '').lower()
+
+            config_reagent = node_config.get('reagent', '').lower()
+            data_reagent = node_data.get('reagent_name', '').lower()
+
+            # 检查是否包含溶剂名称
+            if (solvent.lower() in config_reagent or
+                    solvent.lower() in data_reagent or
+                    solvent.lower() in node_name or
+                    solvent.lower() in node_id.lower()):
+                debug_print(f"  🎉 通过部分匹配找到容器: {node_id} ✨")
+                debug_print(f"    - 节点名称: {node_name}")
+                debug_print(f"    - 配置试剂: {config_reagent}")
+                debug_print(f"    - 数据试剂: {data_reagent}")
+                return node_id
+
+    # 调试信息：列出所有容器
+    debug_print("  🔎 调试信息：列出所有容器...")
+    container_list = []
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            node_config = G.nodes[node_id].get('config', {})
+            node_data = G.nodes[node_id].get('data', {})
+            node_name = G.nodes[node_id].get('name', '')
+
+            container_info = {
+                'id': node_id,
+                'name': node_name,
+                'config_reagent': node_config.get('reagent', ''),
+                'data_reagent': node_data.get('reagent_name', '')
+            }
+            container_list.append(container_info)
+            debug_print(
+                f"    - 容器: {node_id}, 名称: {node_name}, config试剂: {node_config.get('reagent', '')}, data试剂: {node_data.get('reagent_name', '')}")
+
+    debug_print(f"❌ 找不到溶剂 '{solvent}' 对应的容器 😭")
+    debug_print(f"🔍 查找的溶剂: '{solvent}' (小写: '{solvent.lower()}')")
+    debug_print(f"📊 总共发现 {len(container_list)} 个容器")
+
+    raise ValueError(f"找不到溶剂 '{solvent}' 对应的容器")
+
+
+def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
+    """查找连接到指定容器的搅拌器"""
+    debug_print(f"🔍 查找连接到容器 '{vessel}' 的搅拌器...")
+
+    stirrer_nodes = []
+    for node in G.nodes():
+        node_class = G.nodes[node].get('class', '').lower()
+        if 'stirrer' in node_class:
+            stirrer_nodes.append(node)
+            debug_print(f"📋 发现搅拌器: {node}")
+
+    debug_print(f"📊 共找到 {len(stirrer_nodes)} 个搅拌器")
+
+    # 查找连接到容器的搅拌器
+    for stirrer in stirrer_nodes:
+        if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
+            debug_print(f"✅ 找到连接的搅拌器: {stirrer} 🔗")
+            return stirrer
+
+    # 返回第一个搅拌器
+    if stirrer_nodes:
+        debug_print(f"⚠️ 未找到直接连接的搅拌器，使用第一个: {stirrer_nodes[0]} 🔄")
+        return stirrer_nodes[0]
+
+    debug_print(f"❌ 未找到任何搅拌器")
+    return ""
+
+
+def find_solid_dispenser(G: nx.DiGraph) -> str:
+    """查找固体加样器"""
+    debug_print(f"🔍 查找固体加样器...")
+
+    for node in G.nodes():
+        node_class = G.nodes[node].get('class', '').lower()
+        if 'solid_dispenser' in node_class or 'dispenser' in node_class:
+            debug_print(f"✅ 找到固体加样器: {node} 🥄")
+            return node
+
+    debug_print(f"❌ 未找到固体加样器")
+    return ""

unilabos/compile/wash_solid_protocol.py

@@ -3,118 +3,14 @@ import networkx as nx
 import logging
 import re
 
+from .utils.unit_parser import parse_time_input, parse_volume_input
+
 logger = logging.getLogger(__name__)
 
 def debug_print(message):
     """调试输出"""
-    print(f"🧼 [WASH_SOLID] {message}", flush=True)
     logger.info(f"[WASH_SOLID] {message}")
 
-def parse_time_input(time_input: Union[str, float, int]) -> float:
-    """统一时间解析函数（精简版）"""
-    if not time_input:
-        return 0.0
-    
-    # 🔢 处理数值输入
-    if isinstance(time_input, (int, float)):
-        result = float(time_input)
-        debug_print(f"⏰ 数值时间: {time_input} → {result}s")
-        return result
-    
-    # 📝 处理字符串输入
-    time_str = str(time_input).lower().strip()
-    
-    # ❓ 特殊值快速处理
-    special_times = {
-        '?': 60.0, 'unknown': 60.0, 'briefly': 30.0, 
-        'quickly': 45.0, 'slowly': 120.0
-    }
-    
-    if time_str in special_times:
-        result = special_times[time_str]
-        debug_print(f"🎯 特殊时间: '{time_str}' → {result}s")
-        return result
-    
-    # 🔢 数字提取（简化正则）
-    try:
-        # 提取数字
-        numbers = re.findall(r'\d+\.?\d*', time_str)
-        if numbers:
-            value = float(numbers[0])
-            
-            # 简化单位判断
-            if any(unit in time_str for unit in ['min', 'm']):
-                result = value * 60.0
-            elif any(unit in time_str for unit in ['h', 'hour']):
-                result = value * 3600.0
-            else:
-                result = value  # 默认秒
-            
-            debug_print(f"✅ 时间解析: '{time_str}' → {result}s")
-            return result
-    except:
-        pass
-    
-    debug_print(f"⚠️ 时间解析失败: '{time_str}'，使用默认60s")
-    return 60.0
-
-def parse_volume_input(volume: Union[float, str], volume_spec: str = "", mass: str = "") -> float:
-    """统一体积解析函数（精简版）"""
-    debug_print(f"💧 解析体积: volume={volume}, spec='{volume_spec}', mass='{mass}'")
-    
-    # 🎯 优先级1：volume_spec（快速映射）
-    if volume_spec:
-        spec_map = {
-            'small': 20.0, 'medium': 50.0, 'large': 100.0,
-            'minimal': 10.0, 'normal': 50.0, 'generous': 150.0
-        }
-        for key, val in spec_map.items():
-            if key in volume_spec.lower():
-                debug_print(f"🎯 规格匹配: '{volume_spec}' → {val}mL")
-                return val
-    
-    # 🧮 优先级2：mass转体积（简化：1g=1mL）
-    if mass:
-        try:
-            numbers = re.findall(r'\d+\.?\d*', mass)
-            if numbers:
-                value = float(numbers[0])
-                if 'mg' in mass.lower():
-                    result = value / 1000.0
-                elif 'kg' in mass.lower():
-                    result = value * 1000.0
-                else:
-                    result = value  # 默认g
-                debug_print(f"⚖️ 质量转换: {mass} → {result}mL")
-                return result
-        except:
-            pass
-    
-    # 📦 优先级3：volume
-    if volume:
-        if isinstance(volume, (int, float)):
-            result = float(volume)
-            debug_print(f"💧 数值体积: {volume} → {result}mL")
-            return result
-        elif isinstance(volume, str):
-            try:
-                # 提取数字
-                numbers = re.findall(r'\d+\.?\d*', volume)
-                if numbers:
-                    value = float(numbers[0])
-                    # 简化单位判断
-                    if 'l' in volume.lower() and 'ml' not in volume.lower():
-                        result = value * 1000.0  # L转mL
-                    else:
-                        result = value  # 默认mL
-                    debug_print(f"💧 字符串体积: '{volume}' → {result}mL")
-                    return result
-            except:
-                pass
-    
-    # 默认值
-    debug_print(f"⚠️ 体积解析失败，使用默认50mL")
-    return 50.0
 
 def find_solvent_source(G: nx.DiGraph, solvent: str) -> str:
     """查找溶剂源（精简版）"""

unilabos/devices/virtual/virtual_heatchill.py

@@ -67,7 +67,7 @@ class VirtualHeatChill:
         self.logger.info(f"✅ 温控设备 {self.device_id} 清理完成 💤")
         return True
     
-    async def heat_chill(self, vessel: str, temp: float, time, stir: bool, 
+    async def heat_chill(self, temp: float, time, stir: bool,
                         stir_speed: float, purpose: str) -> bool:
         """Execute heat chill action - 🔧 修复：确保参数类型正确"""
         
@@ -77,7 +77,6 @@ class VirtualHeatChill:
             time_value = float(time)  # 强制转换为浮点数
             stir_speed = float(stir_speed)
             stir = bool(stir)
-            vessel = str(vessel)
             purpose = str(purpose)
         except (ValueError, TypeError) as e:
             error_msg = f"参数类型转换错误: temp={temp}({type(temp)}), time={time}({type(time)}), error={str(e)}"
@@ -102,8 +101,7 @@ class VirtualHeatChill:
             operation_mode = "Maintaining"
             status_action = "保温"
         
-        self.logger.info(f"🌡️ 开始温控操作: {vessel} → {temp}°C {temp_emoji}")
+        self.logger.info(f"🌡️ 开始温控操作: {temp}°C {temp_emoji}")
-        self.logger.info(f"  🥽 容器: {vessel}")
         self.logger.info(f"  🎯 目标温度: {temp}°C {temp_emoji}")
         self.logger.info(f"  ⏰ 持续时间: {time_value}s")
         self.logger.info(f"  🌪️ 搅拌: {stir} ({stir_speed} RPM)")
@@ -147,7 +145,7 @@ class VirtualHeatChill:
         stir_info = f" | 🌪️ 搅拌: {stir_speed} RPM" if stir else ""
         
         self.data.update({
-            "status": f"{temp_emoji} 运行中: {status_action} {vessel} 至 {temp}°C | ⏰ 剩余: {total_time:.0f}s{stir_info}",
+            "status": f"{temp_emoji} 运行中: {status_action} 至 {temp}°C | ⏰ 剩余: {total_time:.0f}s{stir_info}",
             "operation_mode": operation_mode,
             "is_stirring": stir,
             "stir_speed": stir_speed if stir else 0.0,
@@ -165,7 +163,7 @@ class VirtualHeatChill:
             # 更新剩余时间和状态
             self.data.update({
                 "remaining_time": remaining,
-                "status": f"{temp_emoji} 运行中: {status_action} {vessel} 至 {temp}°C | ⏰ 剩余: {remaining:.0f}s{stir_info}",
+                "status": f"{temp_emoji} 运行中: {status_action} 至 {temp}°C | ⏰ 剩余: {remaining:.0f}s{stir_info}",
                 "progress": progress
             })
             
@@ -185,7 +183,7 @@ class VirtualHeatChill:
         final_stir_info = f" | 🌪️ 搅拌: {stir_speed} RPM" if stir else ""
         
         self.data.update({
-            "status": f"✅ 完成: {vessel} 已达到 {temp}°C {temp_emoji} | ⏱️ 用时: {total_time:.0f}s{final_stir_info}",
+            "status": f"✅ 完成: 已达到 {temp}°C {temp_emoji} | ⏱️ 用时: {total_time:.0f}s{final_stir_info}",
             "operation_mode": "Completed",
             "remaining_time": 0.0,
             "is_stirring": False,
@@ -195,7 +193,6 @@ class VirtualHeatChill:
         
         self.logger.info(f"🎉 温控操作完成! ✨")
         self.logger.info(f"📊 操作结果:")
-        self.logger.info(f"  🥽 容器: {vessel}")
         self.logger.info(f"  🌡️ 达到温度: {temp}°C {temp_emoji}")
         self.logger.info(f"  ⏱️ 总用时: {total_time:.0f}s")
         if stir:
@@ -204,13 +201,12 @@ class VirtualHeatChill:
         
         return True
     
-    async def heat_chill_start(self, vessel: str, temp: float, purpose: str) -> bool:
+    async def heat_chill_start(self, temp: float, purpose: str) -> bool:
         """Start continuous heat chill 🔄"""
         
         # 🔧 添加类型转换
         try:
             temp = float(temp)
-            vessel = str(vessel)
             purpose = str(purpose)
         except (ValueError, TypeError) as e:
             error_msg = f"参数类型转换错误: {str(e)}"
@@ -235,8 +231,7 @@ class VirtualHeatChill:
             operation_mode = "Maintaining"
             status_action = "恒温保持"
         
-        self.logger.info(f"🔄 启动持续温控: {vessel} → {temp}°C {temp_emoji}")
+        self.logger.info(f"🔄 启动持续温控: {temp}°C {temp_emoji}")
-        self.logger.info(f"  🥽 容器: {vessel}")
         self.logger.info(f"  🎯 目标温度: {temp}°C {temp_emoji}")
         self.logger.info(f"  🔄 模式: {status_action}")
         self.logger.info(f"  📝 目的: {purpose}")
@@ -252,7 +247,7 @@ class VirtualHeatChill:
             return False
         
         self.data.update({
-            "status": f"🔄 启动: {status_action} {vessel} 至 {temp}°C {temp_emoji} | ♾️ 持续运行",
+            "status": f"🔄 启动: {status_action} 至 {temp}°C {temp_emoji} | ♾️ 持续运行",
             "operation_mode": operation_mode,
             "is_stirring": False,
             "stir_speed": 0.0,
@@ -262,28 +257,20 @@ class VirtualHeatChill:
         self.logger.info(f"✅ 持续温控已启动! {temp_emoji} {status_action}模式 🚀")
         return True
     
-    async def heat_chill_stop(self, vessel: str) -> bool:
+    async def heat_chill_stop(self) -> bool:
         """Stop heat chill 🛑"""
         
-        # 🔧 添加类型转换
+        self.logger.info(f"🛑 停止温控:")
-        try:
-            vessel = str(vessel)
-        except (ValueError, TypeError) as e:
-            error_msg = f"参数类型转换错误: {str(e)}"
-            self.logger.error(f"❌ {error_msg}")
-            return False
-        
-        self.logger.info(f"🛑 停止温控: {vessel}")
         
         self.data.update({
-            "status": f"🛑 已停止: {vessel} 温控停止",
+            "status": f"🛑 {self.device_id} 温控停止",
             "operation_mode": "Stopped",
             "is_stirring": False,
             "stir_speed": 0.0,
             "remaining_time": 0.0,
         })
         
-        self.logger.info(f"✅ 温控设备已停止 {vessel} 的温度控制 🏁")
+        self.logger.info(f"✅ 温控设备已停止 {self.device_id} 温度控制 🏁")
         return True
     
     # 状态属性

unilabos/devices/virtual/virtual_pump.py

@@ -1,197 +0,0 @@
-import asyncio
-import logging
-from typing import Dict, Any, Optional
-
-class VirtualPump:
-    """Virtual pump device for transfer and cleaning operations"""
-    
-    def __init__(self, device_id: str = None, config: Dict[str, Any] = None, **kwargs):
-        # 处理可能的不同调用方式
-        if device_id is None and 'id' in kwargs:
-            device_id = kwargs.pop('id')
-        if config is None and 'config' in kwargs:
-            config = kwargs.pop('config')
-        
-        # 设置默认值
-        self.device_id = device_id or "unknown_pump"
-        self.config = config or {}
-        
-        self.logger = logging.getLogger(f"VirtualPump.{self.device_id}")
-        self.data = {}
-        
-        # 从config或kwargs中获取配置参数
-        self.port = self.config.get('port') or kwargs.get('port', 'VIRTUAL')
-        self._max_volume = self.config.get('max_volume') or kwargs.get('max_volume', 50.0)
-        self._transfer_rate = self.config.get('transfer_rate') or kwargs.get('transfer_rate', 10.0)
-        
-        print(f"=== VirtualPump {self.device_id} created with max_volume={self._max_volume}, transfer_rate={self._transfer_rate} ===")
-    
-    async def initialize(self) -> bool:
-        """Initialize virtual pump"""
-        self.logger.info(f"Initializing virtual pump {self.device_id}")
-        self.data.update({
-            "status": "Idle",
-            "valve_position": 0,
-            "current_volume": 0.0,
-            "max_volume": self._max_volume,
-            "transfer_rate": self._transfer_rate,
-            "from_vessel": "",
-            "to_vessel": "",
-            "progress": 0.0,
-            "transferred_volume": 0.0,
-            "current_status": "Ready"
-        })
-        return True
-    
-    async def cleanup(self) -> bool:
-        """Cleanup virtual pump"""
-        self.logger.info(f"Cleaning up virtual pump {self.device_id}")
-        return True
-    
-    async def transfer(self, from_vessel: str, to_vessel: str, volume: float,
-                      amount: str = "", time: float = 0.0, viscous: bool = False,
-                      rinsing_solvent: str = "", rinsing_volume: float = 0.0,
-                      rinsing_repeats: int = 0, solid: bool = False) -> bool:
-        """Execute transfer operation"""
-        self.logger.info(f"Transferring {volume}mL from {from_vessel} to {to_vessel}")
-        
-        # 计算转移时间
-        transfer_time = volume / self._transfer_rate if time == 0 else time
-        
-        self.data.update({
-            "status": "Running",
-            "from_vessel": from_vessel,
-            "to_vessel": to_vessel,
-            "current_status": "Transferring",
-            "progress": 0.0,
-            "transferred_volume": 0.0
-        })
-        
-        # 模拟转移过程
-        steps = 10
-        step_time = transfer_time / steps
-        step_volume = volume / steps
-        
-        for i in range(steps):
-            await asyncio.sleep(step_time)
-            progress = (i + 1) / steps * 100
-            current_volume = step_volume * (i + 1)
-            
-            self.data.update({
-                "progress": progress,
-                "transferred_volume": current_volume,
-                "current_status": f"Transferring: {progress:.1f}%"
-            })
-            
-            self.logger.info(f"Transfer progress: {progress:.1f}%")
-        
-        self.data.update({
-            "status": "Idle",
-            "current_status": "Transfer completed",
-            "progress": 100.0,
-            "transferred_volume": volume
-        })
-        
-        return True
-    
-    async def clean_vessel(self, vessel: str, solvent: str, volume: float, 
-                      temp: float, repeats: int = 1) -> bool:
-        """Execute vessel cleaning operation - matches CleanVessel action"""
-        self.logger.info(f"Starting vessel cleaning: {vessel} with {solvent} ({volume}mL at {temp}°C, {repeats} repeats)")
-        
-        # 更新设备状态
-        self.data.update({
-            "status": "Running",
-            "from_vessel": f"flask_{solvent}",
-            "to_vessel": vessel,
-            "current_status": "Cleaning in progress",
-            "progress": 0.0,
-            "transferred_volume": 0.0
-        })
-        
-        # 计算清洗时间（基于体积和重复次数）
-        # 假设清洗速度为 transfer_rate 的一半（因为需要加载和排放）
-        cleaning_rate = self._transfer_rate / 2
-        cleaning_time_per_cycle = volume / cleaning_rate
-        total_cleaning_time = cleaning_time_per_cycle * repeats
-        
-        # 模拟清洗过程
-        steps_per_repeat = 10  # 每次重复清洗分10个步骤
-        total_steps = steps_per_repeat * repeats
-        step_time = total_cleaning_time / total_steps
-        
-        for repeat in range(repeats):
-            self.logger.info(f"Starting cleaning cycle {repeat + 1}/{repeats}")
-            
-            for step in range(steps_per_repeat):
-                await asyncio.sleep(step_time)
-                
-                # 计算当前进度
-                current_step = repeat * steps_per_repeat + step + 1
-                progress = (current_step / total_steps) * 100
-                
-                # 计算已处理的体积
-                volume_processed = (current_step / total_steps) * volume * repeats
-                
-                # 更新状态
-                self.data.update({
-                    "progress": progress,
-                    "transferred_volume": volume_processed,
-                    "current_status": f"Cleaning cycle {repeat + 1}/{repeats} - Step {step + 1}/{steps_per_repeat} ({progress:.1f}%)"
-                })
-                
-                self.logger.info(f"Cleaning progress: {progress:.1f}% (Cycle {repeat + 1}/{repeats})")
-    
-        # 清洗完成
-        self.data.update({
-            "status": "Idle",
-            "current_status": "Cleaning completed successfully",
-            "progress": 100.0,
-            "transferred_volume": volume * repeats,
-            "from_vessel": "",
-            "to_vessel": ""
-        })
-        
-        self.logger.info(f"Vessel cleaning completed: {vessel}")
-        return True
-    
-    # 状态属性
-    @property
-    def status(self) -> str:
-        return self.data.get("status", "Unknown")
-    
-    @property
-    def valve_position(self) -> int:
-        return self.data.get("valve_position", 0)
-    
-    @property
-    def current_volume(self) -> float:
-        return self.data.get("current_volume", 0.0)
-    
-    @property
-    def max_volume(self) -> float:
-        return self.data.get("max_volume", 0.0)
-    
-    @property
-    def transfer_rate(self) -> float:
-        return self.data.get("transfer_rate", 0.0)
-    
-    @property
-    def from_vessel(self) -> str:
-        return self.data.get("from_vessel", "")
-    
-    @property
-    def to_vessel(self) -> str:
-        return self.data.get("to_vessel", "")
-    
-    @property
-    def progress(self) -> float:
-        return self.data.get("progress", 0.0)
-    
-    @property
-    def transferred_volume(self) -> float:
-        return self.data.get("transferred_volume", 0.0)
-    
-    @property
-    def current_status(self) -> str:
-        return self.data.get("current_status", "Ready")

unilabos/ros/nodes/presets/protocol_node.py

@@ -225,7 +225,8 @@ class ROS2ProtocolNode(BaseROS2DeviceNode):
                 self.lab_logger().info(f"Working on physical setup: {physical_setup_graph}")
                 protocol_steps = protocol_steps_generator(G=physical_setup_graph, **protocol_kwargs)
                 
-                self.lab_logger().info(f"Goal received: {protocol_kwargs}, running steps: \n{protocol_steps}")
+                self.lab_logger().info(f"Goal received: {protocol_kwargs}, running steps: "
+                                       f"{json.dumps([step for step in protocol_steps if 'log_message' not in step['action_kwargs']], indent=4)}")
 
                 time_start = time.time()
                 time_overall = 100

unilabos/ros/nodes/presets/workstation.py

@@ -6,6 +6,7 @@ from pylabrobot.resources import Resource as PLRResource, Plate, TipRack, Coordi
 from unilabos.ros.nodes.presets.protocol_node import ROS2ProtocolNode
 from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker
 
+
 class WorkStationContainer(Plate, TipRack):
     """
     WorkStation 专用 Container 类，继承自 Plate和TipRack
@@ -82,3 +83,4 @@ class WorkStationExample(ROS2ProtocolNode):
         """
         to_base_plate.assign_child_resource(from_plate, Coordinate.zero())
         pass
+