From 5a2ea479b99236c80310b4a40a8ec05f09a62f4c Mon Sep 17 00:00:00 2001 From: Guangxin Zhang Date: Sat, 19 Jul 2025 22:42:43 +0800 Subject: [PATCH] test --- deck_9300_new.json | 21197 ++++++++++++++++ .../devices/liquid_handling/prcxi/prcxi.py | 72 +- 2 files changed, 21232 insertions(+), 37 deletions(-) create mode 100644 deck_9300_new.json diff --git a/deck_9300_new.json b/deck_9300_new.json new file mode 100644 index 0000000..f37c1b5 --- /dev/null +++ b/deck_9300_new.json @@ -0,0 +1,21197 @@ +[ + { + "id": "PRCXI_Deck_9300", + "name": "PRCXI_Deck_9300", + "sample_id": null, + "children": [ + "RackT1", + "PlateT2", + "trash", + "PlateT4", + "PlateT5", + "PlateT6" + ], + "parent": "lh_PRCXI_Deck_9300", + "type": "deck", + "class": "", + "position": { + "x": 0, + "y": 0, + "z": 0 + }, + "config": { + "type": "PRCXI9300Deck", + "size_x": 100, + "size_y": 100, + "size_z": 100, + "rotation": { + "x": 0, + "y": 0, + "z": 0, + "type": "Rotation" + }, + "category": "deck", + "barcode": null + 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"x": 110.9545, + "y": 17.8145, + "z": 3.55 + }, + "config": { + "type": "Well", + "size_x": 4.851, + "size_y": 4.851, + "size_z": 10.67, + "rotation": { + "x": 0, + "y": 0, + "z": 0, + "type": "Rotation" + }, + "category": "well", + "model": null, + "barcode": null, + "max_volume": 360, + "material_z_thickness": null, + "compute_volume_from_height": null, + "compute_height_from_volume": null, + "bottom_type": "unknown", + "cross_section_type": "circle" + }, + "data": { + "liquids": [], + "pending_liquids": [], + "liquid_history": [] + } + }, + { + "id": "PlateT6_H12", + "name": "PlateT6_H12", + "sample_id": null, + "children": [], + "parent": "PlateT6", + "type": "well", + "class": "", + "position": { + "x": 110.9545, + "y": 8.8145, + "z": 3.55 + }, + "config": { + "type": "Well", + "size_x": 4.851, + "size_y": 4.851, + "size_z": 10.67, + "rotation": { + "x": 0, + "y": 0, + "z": 0, + "type": "Rotation" + }, + "category": "well", + "model": null, + "barcode": null, + "max_volume": 360, + "material_z_thickness": null, + "compute_volume_from_height": null, + "compute_height_from_volume": null, + "bottom_type": "unknown", + "cross_section_type": "circle" + }, + "data": { + "liquids": [], + "pending_liquids": [], + "liquid_history": [] + } + } +] \ No newline at end of file diff --git a/unilabos/devices/liquid_handling/prcxi/prcxi.py b/unilabos/devices/liquid_handling/prcxi/prcxi.py index 9fe0ee6..2c2de92 100644 --- a/unilabos/devices/liquid_handling/prcxi/prcxi.py +++ b/unilabos/devices/liquid_handling/prcxi/prcxi.py @@ -1096,22 +1096,22 @@ if __name__ == "__main__": # asyncio.run(handler.mix(well_containers.children[:8 # ], mix_time=3, mix_vol=50, height_to_bottom=0.5, offsets=Coordinate(0, 0, 0), mix_rate=100)) # #print(json.dumps(handler._unilabos_backend.steps_todo_list, indent=2)) # Print matrix info - asyncio.run(handler.add_liquid( - asp_vols=[100]*16, - dis_vols=[100]*16, - reagent_sources=plate2.children[:16], - targets=plate5.children[:16], - use_channels=[0, 1, 2, 3, 4, 5, 6, 7], - flow_rates=[None] * 32, - offsets=[Coordinate(0, 0, 0)] * 32, - liquid_height=[None] * 16, - blow_out_air_volume=[None] * 16, - delays=None, - mix_time=3, - mix_vol=50, - spread="wide", - )) - asyncio.run(handler.run_protocol()) # Run the protocol + # asyncio.run(handler.add_liquid( + # asp_vols=[100]*16, + # dis_vols=[100]*16, + # reagent_sources=plate2.children[:16], + # targets=plate5.children[:16], + # use_channels=[0, 1, 2, 3, 4, 5, 6, 7], + # flow_rates=[None] * 32, + # offsets=[Coordinate(0, 0, 0)] * 32, + # liquid_height=[None] * 16, + # blow_out_air_volume=[None] * 16, + # delays=None, + # mix_time=3, + # mix_vol=50, + # spread="wide", + # )) + # asyncio.run(handler.run_protocol()) # Run the protocol # asyncio.run(handler.remove_liquid( # vols=[100]*16, # sources=plate2.children[-16:], @@ -1124,27 +1124,25 @@ if __name__ == "__main__": # spread="wide", # )) - # acid = [20]*8+[40]*8+[60]*8+[80]*8+[100]*8+[120]*8+[140]*8+[160]*8+[180]*8+[200]*8+[220]*8+[240]*8 - # alkaline = acid[::-1] # Reverse the acid list for alkaline - # asyncio.run(handler.transfer_liquid( - # asp_vols=acid, - # dis_vols=acid, - # tip_racks=[plate1], - # sources=plate2.children[:], - # targets=plate5.children[:], - # use_channels=[0, 1, 2, 3, 4, 5, 6, 7], - # offsets=[Coordinate(0, 0, 0)] * 32, - # asp_flow_rates=[None] * 16, - # dis_flow_rates=[None] * 16, - # liquid_height=[None] * 32, - # blow_out_air_volume=[None] * 32, - # mix_times=3, - # mix_vol=50, - # spread="wide", - # )) - # print(json.dumps(handler._unilabos_backend.steps_todo_list, indent=2)) # Print matrix info - # # # input("pick_up_tips add step") - # asyncio.run(handler.run_protocol()) # Run the protocol + acid = [20]*8+[40]*8+[60]*8+[80]*8+[100]*8+[120]*8+[140]*8+[160]*8+[180]*8+[200]*8+[220]*8+[240]*8 + alkaline = acid[::-1] # Reverse the acid list for alkaline + asyncio.run(handler.transfer_liquid( + asp_vols=acid, + dis_vols=acid, + tip_racks=[plate1], + sources=plate2.children[:], + targets=plate5.children[:], + use_channels=[0, 1, 2, 3, 4, 5, 6, 7], + offsets=[Coordinate(0, 0, 0)] * 32, + asp_flow_rates=[None] * 16, + dis_flow_rates=[None] * 16, + liquid_height=[None] * 32, + blow_out_air_volume=[None] * 32, + mix_times=3, + mix_vol=50, + spread="wide", + )) + asyncio.run(handler.run_protocol()) # Run the protocol # # input("Running protocol...") # # input("Press Enter to continue...") # Wait for user input before proceeding # # print("PRCXI9300Handler initialized with deck and host settings.")