add BIOYOND deck assignment and pass all tests

test/resources/test_bottle_carrier.py

@@ -4,8 +4,7 @@ from unilabos.resources.bioyond.bottle_carriers import BIOYOND_Electrolyte_6Vial
 from unilabos.resources.bioyond.bottles import BIOYOND_PolymerStation_Solid_Vial, BIOYOND_PolymerStation_Solution_Beaker, BIOYOND_PolymerStation_Reagent_Bottle
 
 
-@pytest.fixture
-def bottle_carrier() -> "BottleCarrier":
+def test_bottle_carrier() -> "BottleCarrier":
     print("创建载架...")
 
     # 创建6瓶载架
@@ -30,10 +29,10 @@ def bottle_carrier() -> "BottleCarrier":
     print(f"\n测试放置容器...")
 
     # 通过载架的索引操作来放置容器
-    bottle_carrier[0] = powder_bottle  # 放置粉末瓶到第一个位置
+    # bottle_carrier[0] = powder_bottle  # 放置粉末瓶到第一个位置
     print(f"粉末瓶已放置到6瓶载架的位置 0")
 
-    beaker_carrier[0] = solution_beaker  # 放置烧杯到第一个位置
+    # beaker_carrier[0] = solution_beaker  # 放置烧杯到第一个位置
     print(f"溶液烧杯已放置到1烧杯载架的位置 0")
 
     # 验证放置结果

test/resources/test_converter_bioyond.py

@@ -5,6 +5,8 @@ import os
 from unilabos.resources.graphio import resource_bioyond_to_plr
 from unilabos.registry.registry import lab_registry
 
+from unilabos.resources.bioyond.decks import BIOYOND_PolymerReactionStation_Deck
+
 lab_registry.setup()
 
 
@@ -25,7 +27,9 @@ def bioyond_materials() -> list[dict]:
 
 
 def test_bioyond_to_plr(bioyond_materials) -> list[dict]:
+    deck = BIOYOND_PolymerReactionStation_Deck("test_deck")
     print("将 BioYond 物料数据转换为 PLR 格式...")
-    output = resource_bioyond_to_plr(bioyond_materials, type_mapping=type_mapping)
+    output = resource_bioyond_to_plr(bioyond_materials, type_mapping=type_mapping, deck=deck)
+    print(deck.summary())
     print([resource.serialize() for resource in output])
     print([resource.serialize_all_state() for resource in output])

unilabos/resources/bioyond/decks.py

@@ -6,19 +6,21 @@ from unilabos.resources.bioyond.warehouses import bioyond_warehouse_1x4x4, bioyo
 class BIOYOND_PolymerReactionStation_Deck(Deck):
     def __init__(self, name: str = "PolymerReactionStation_Deck") -> None:
         super().__init__(name=name, size_x=2700.0, size_y=1080.0, size_z=1500.0)
+        self.setup()
 
     def setup(self) -> None:
         # 添加仓库
         self.warehouses = {
-            "io_warehouse_left": bioyond_warehouse_1x4x4("io_warehouse_left"),
-            "io_warehouse_right": bioyond_warehouse_1x4x4("io_warehouse_right"),
-            "liquid_and_lid_handling": bioyond_warehouse_liquid_and_lid_handling("liquid_and_lid_handling"),
+            "堆栈1": bioyond_warehouse_1x4x4("堆栈1"),
+            "堆栈2": bioyond_warehouse_1x4x4("堆栈2"),
+            "站内试剂存放堆栈": bioyond_warehouse_liquid_and_lid_handling("站内试剂存放堆栈"),
         }
         self.warehouse_locations = {
-            "io_warehouse_left": Coordinate(0.0, 650.0, 0.0),
-            "io_warehouse_right": Coordinate(2550.0, 650.0, 0.0),
-            "liquid_and_lid_handling": Coordinate(800.0, 475.0, 0.0),
+            "堆栈1": Coordinate(0.0, 650.0, 0.0),
+            "堆栈2": Coordinate(2550.0, 650.0, 0.0),
+            "站内试剂存放堆栈": Coordinate(800.0, 475.0, 0.0),
         }
+        self.warehouses["站内试剂存放堆栈"].rotation = 90.0
 
         for warehouse_name, warehouse in self.warehouses.items():
             self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])

unilabos/resources/bioyond/warehouses.py

@@ -8,12 +8,12 @@ def bioyond_warehouse_1x4x4(name: str) -> WareHouse:
         num_items_x=1,
         num_items_y=4,
         num_items_z=4,
-        dx=137.0,
-        dy=96.0,
-        dz=120.0,
-        item_dx=10.0,
-        item_dy=10.0,
-        item_dz=10.0,
+        dx=10.0,
+        dy=10.0,
+        dz=10.0,
+        item_dx=137.0,
+        item_dy=96.0,
+        item_dz=120.0,
         category="warehouse",
     )
 
@@ -25,12 +25,12 @@ def bioyond_warehouse_1x4x2(name: str) -> WareHouse:
         num_items_x=1,
         num_items_y=4,
         num_items_z=2,
-        dx=137.0,
-        dy=96.0,
-        dz=120.0,
-        item_dx=10.0,
-        item_dy=10.0,
-        item_dz=10.0,
+        dx=10.0,
+        dy=10.0,
+        dz=10.0,
+        item_dx=137.0,
+        item_dy=96.0,
+        item_dz=120.0,
         category="warehouse",
         removed_positions=None
     )
@@ -43,12 +43,12 @@ def bioyond_warehouse_liquid_and_lid_handling(name: str) -> WareHouse:
         num_items_x=2,
         num_items_y=5,
         num_items_z=1,
-        dx=137.0,
-        dy=96.0,
-        dz=120.0,
-        item_dx=10.0,
-        item_dy=10.0,
-        item_dz=10.0,
+        dx=10.0,
+        dy=10.0,
+        dz=10.0,
+        item_dx=137.0,
+        item_dy=96.0,
+        item_dz=120.0,
         category="warehouse",
         removed_positions=None
     )

unilabos/resources/graphio.py

@@ -480,7 +480,7 @@ def resource_plr_to_ulab(resource_plr: "ResourcePLR", parent_name: str = None, w
     return r
 
 
-def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: dict = {}, location_id_mapping: dict = None) -> list[dict]:
+def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: dict = {}, deck: Any = None) -> list[dict]:
     """
     将 bioyond 物料格式转换为 ulab 物料格式
 
@@ -513,6 +513,17 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: dict =
                 
         plr_materials.append(plr_material)
 
+        if deck and hasattr(deck, "warehouses"):
+            for loc in material.get("locations", []):
+                if hasattr(deck, "warehouses") and loc.get("whName") in deck.warehouses:
+                    warehouse = deck.warehouses[loc["whName"]]
+                    idx = (loc.get("y", 0) - 1) * warehouse.num_items_x * warehouse.num_items_y + \
+                          (loc.get("x", 0) - 1) * warehouse.num_items_x + \
+                          (loc.get("z", 0) - 1)
+                    if 0 <= idx < warehouse.num_items_x * warehouse.num_items_y * warehouse.num_items_z:
+                        if warehouse[idx].resource is None:
+                            warehouse[idx] = plr_material
+
     return plr_materials