37-biomek-i5i7 (#40)

* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* Refine biomek

* Refine copy issue

* Refine

---------

Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>
This commit is contained in:
Xuwznln
2025-06-09 16:57:42 +08:00
committed by GitHub
parent 3470a1cb69
commit 729a0fcf0c
74 changed files with 16032 additions and 131 deletions

View File

@@ -30,18 +30,18 @@ class HTTPClient:
self.auth = MQConfig.lab_id
info(f"HTTPClient 初始化完成: remote_addr={self.remote_addr}")
def resource_add(self, resources: List[Dict[str, Any]]) -> requests.Response:
def resource_add(self, resources: List[Dict[str, Any]], database_process_later:bool) -> requests.Response:
"""
添加资源
Args:
resources: 要添加的资源列表
database_process_later: 后台处理资源
Returns:
Response: API响应对象
"""
response = requests.post(
f"{self.remote_addr}/lab/resource/",
f"{self.remote_addr}/lab/resource/?database_process_later={1 if database_process_later else 0}",
json=resources,
headers={"Authorization": f"lab {self.auth}"},
timeout=5,