修复了很多protocol，亲测能跑

unilabos/messages/__init__.py

@@ -33,19 +33,19 @@ class CleanProtocol(BaseModel):
 
 
 class SeparateProtocol(BaseModel):
-    purpose: str  # 'wash' or 'extract'. 'wash' means that product phase will not be the added solvent phase, 'extract' means product phase will be the added solvent phase. If no solvent is added just use 'extract'.
-    product_phase: str # 'top' or 'bottom'. Phase that product will be in.
-    from_vessel: str #Contents of from_vessel are transferred to separation_vessel and separation is performed.
-    separation_vessel: str # Vessel in which separation of phases will be carried out.
-    to_vessel: str # Vessel to send product phase to.
-    waste_phase_to_vessel: str # Optional. Vessel to send waste phase to.
-    solvent: str # Optional. Solvent to add to separation vessel after contents of from_vessel has been transferred to create two phases.
-    solvent_volume: float # Optional. Volume of solvent to add.
-    through: str # Optional. Solid chemical to send product phase through on way to to_vessel, e.g. 'celite'.
-    repeats: int # Optional. Number of separations to perform.
-    stir_time: float # Optional. Time stir for after adding solvent, before separation of phases.
-    stir_speed: float # Optional. Speed to stir at after adding solvent, before separation of phases.
-    settling_time: float # Optional. Time
+    purpose: str
+    product_phase: str
+    from_vessel: str
+    separation_vessel: str
+    to_vessel: str
+    waste_phase_to_vessel: str
+    solvent: str
+    solvent_volume: float
+    through: str
+    repeats: int
+    stir_time: float
+    stir_speed: float
+    settling_time: float
 
 
 class EvaporateProtocol(BaseModel):
@@ -67,6 +67,7 @@ class AGVTransferProtocol(BaseModel):
     to_repo: dict
     from_repo_position: str
     to_repo_position: str
+
 #=============新添加的新的协议================
 class AddProtocol(BaseModel):
     vessel: str
@@ -84,16 +85,16 @@ class CentrifugeProtocol(BaseModel):
     vessel: str
     speed: float
     time: float
-    temp: float  # 移除默认值
+    temp: float
 
 class FilterProtocol(BaseModel):
     vessel: str
-    filtrate_vessel: str  # 移除默认值
-    stir: bool  # 移除默认值
-    stir_speed: float  # 移除默认值
-    temp: float  # 移除默认值
-    continue_heatchill: bool  # 移除默认值
-    volume: float  # 移除默认值
+    filtrate_vessel: str
+    stir: bool
+    stir_speed: float
+    temp: float
+    continue_heatchill: bool
+    volume: float
 
 class HeatChillProtocol(BaseModel):
     vessel: str
@@ -137,45 +138,53 @@ class TransferProtocol(BaseModel):
     solid: bool = False
 
 class CleanVesselProtocol(BaseModel):
-    vessel: str                 # 要清洗的容器名称
-    solvent: str               # 用于清洗容器的溶剂名称
-    volume: float              # 清洗溶剂的体积，可选参数
-    temp: float                # 清洗时的温度，可选参数
-    repeats: int = 1           # 清洗操作的重复次数，默认为 1
+    vessel: str
+    solvent: str
+    volume: float
+    temp: float
+    repeats: int = 1
 
 class DissolveProtocol(BaseModel):
-    vessel: str                 # 装有要溶解物质的容器名称
-    solvent: str               # 用于溶解物质的溶剂名称
-    volume: float              # 溶剂的体积，可选参数
-    amount: str = ""           # 要溶解物质的量，可选参数
-    temp: float = 25.0         # 溶解时的温度，可选参数
-    time: float = 0.0          # 溶解的时间，可选参数
-    stir_speed: float = 0.0    # 搅拌速度，可选参数
+    vessel: str
+    solvent: str
+    volume: float
+    amount: str = ""
+    temp: float = 25.0
+    time: float = 0.0
+    stir_speed: float = 0.0
 
 class FilterThroughProtocol(BaseModel):
-    from_vessel: str              # 源容器的名称，即物质起始所在的容器
-    to_vessel: str                # 目标容器的名称，物质过滤后要到达的容器
-    filter_through: str           # 过滤时所通过的介质，如滤纸、柱子等
-    eluting_solvent: str = ""     # 洗脱溶剂的名称，可选参数
-    eluting_volume: float = 0.0   # 洗脱溶剂的体积，可选参数
-    eluting_repeats: int = 0      # 洗脱操作的重复次数，默认为 0
-    residence_time: float = 0.0   # 物质在过滤介质中的停留时间，可选参数
+    from_vessel: str
+    to_vessel: str
+    filter_through: str
+    eluting_solvent: str = ""
+    eluting_volume: float = 0.0
+    eluting_repeats: int = 0
+    residence_time: float = 0.0
 
 class RunColumnProtocol(BaseModel):
-    from_vessel: str              # 源容器的名称，即样品起始所在的容器
-    to_vessel: str                # 目标容器的名称，分离后的样品要到达的容器
-    column: str                   # 所使用的柱子的名称
+    from_vessel: str
+    to_vessel: str
+    column: str
 
 class WashSolidProtocol(BaseModel):
-    vessel: str                   # 装有固体物质的容器名称
-    solvent: str                  # 用于清洗固体的溶剂名称
-    volume: float                 # 清洗溶剂的体积
-    filtrate_vessel: str = ""     # 滤液要收集到的容器名称，可选参数
-    temp: float = 25.0            # 清洗时的温度，可选参数
-    stir: bool = False            # 是否在清洗过程中搅拌，默认为 False
-    stir_speed: float = 0.0       # 搅拌速度，可选参数
-    time: float = 0.0             # 清洗的时间，可选参数
-    repeats: int = 1              # 清洗操作的重复次数，默认为 1
+    vessel: str
+    solvent: str
+    volume: float
+    filtrate_vessel: str = ""
+    temp: float = 25.0
+    stir: bool = False
+    stir_speed: float = 0.0
+    time: float = 0.0
+    repeats: int = 1
 
-__all__ = ["Point3D", "PumpTransferProtocol", "CleanProtocol", "SeparateProtocol", "EvaporateProtocol", "EvacuateAndRefillProtocol", "AGVTransferProtocol", "CentrifugeProtocol", "AddProtocol", "FilterProtocol", "HeatChillProtocol", "HeatChillStartProtocol", "HeatChillStopProtocol", "StirProtocol", "StartStirProtocol", "StopStirProtocol", "TransferProtocol", "CleanVesselProtocol", "DissolveProtocol", "FilterThroughProtocol", "RunColumnProtocol", "WashSolidProtocol"]
+__all__ = [
+    "Point3D", "PumpTransferProtocol", "CleanProtocol", "SeparateProtocol", 
+    "EvaporateProtocol", "EvacuateAndRefillProtocol", "AGVTransferProtocol", 
+    "CentrifugeProtocol", "AddProtocol", "FilterProtocol", 
+    "HeatChillProtocol", "HeatChillStartProtocol", "HeatChillStopProtocol", 
+    "StirProtocol", "StartStirProtocol", "StopStirProtocol", 
+    "TransferProtocol", "CleanVesselProtocol", "DissolveProtocol", 
+    "FilterThroughProtocol", "RunColumnProtocol", "WashSolidProtocol"
+]
 # End Protocols