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HR物料同步，前端展示位置修复 (#135)
* 更新Bioyond工作站配置，添加新的物料类型映射和载架定义，优化物料查询逻辑 * 添加Bioyond实验配置文件，定义物料类型映射和设备配置 * 更新bioyond_warehouse_reagent_stack方法，修正试剂堆栈尺寸和布局描述 * 更新Bioyond实验配置，修正物料类型映射，优化设备配置 * 更新Bioyond资源同步逻辑，优化物料入库流程，增强错误处理和日志记录 * 更新Bioyond资源，添加配液站和反应站专用载架，优化仓库工厂函数的排序方式 * 更新Bioyond资源，添加配液站和反应站相关载架，优化试剂瓶和样品瓶配置 * 更新Bioyond实验配置，修正试剂瓶载架ID，确保与设备匹配 * 更新Bioyond资源，移除反应站单烧杯载架，添加反应站单烧瓶载架分类 * Refactor Bioyond resource synchronization and update bottle carrier definitions - Removed traceback printing in error handling for Bioyond synchronization. - Enhanced logging for existing Bioyond material ID usage during synchronization. - Added new bottle carrier definitions for single flask and updated existing ones. - Refactored dispensing station and reaction station bottle definitions for clarity and consistency. - Improved resource mapping and error handling in graphio for Bioyond resource conversion. - Introduced layout parameter in warehouse factory for better warehouse configuration. * 更新Bioyond仓库工厂，添加排序方式支持，优化坐标计算逻辑 * 更新Bioyond载架和甲板配置，调整样品板尺寸和仓库坐标 * 更新Bioyond资源同步，增强占用位置日志信息，修正坐标转换逻辑 * 更新Bioyond反应站和分配站配置，调整材料类型映射和ID，移除不必要的项 * support name change during materials change * fix json dumps * correct tip * 优化调度器API路径，更新相关方法描述 * 更新 BIOYOND 载架相关文档，调整 API 以支持自带试剂瓶的载架类型，修复资源获取时的子物料处理逻辑 * 实现资源删除时的同步处理，优化出库操作逻辑 * 修复 ItemizedCarrier 中的可见性逻辑 * 保存 Bioyond 原始信息到 unilabos_extra，以便出库时查询 * 根据 resource.capacity 判断是试剂瓶（载架）还是多瓶载架，走不同的奔曜转换 * Fix bioyond bottle_carriers ordering * 优化 Bioyond 物料同步逻辑，增强坐标解析和位置更新处理 * disable slave connect websocket * correct remove_resource stats * change uuid logger to trace level * enable slave mode * refactor(bioyond): 统一资源命名并优化物料同步逻辑 - 将DispensingStation和ReactionStation资源统一为PolymerStation命名 - 优化物料同步逻辑，支持耗材类型(typeMode=0)的查询 - 添加物料默认参数配置功能 - 调整仓库坐标布局 - 清理废弃资源定义 * feat(warehouses): 为仓库函数添加col_offset和layout参数 * refactor: 更新实验配置中的物料类型映射命名 将DispensingStation和ReactionStation的物料类型映射统一更名为PolymerStation，保持命名一致性 * fix: 更新实验配置中的载体名称从6VialCarrier到6StockCarrier * feat(bioyond): 实现物料创建与入库分离逻辑 将物料同步流程拆分为两个独立阶段：transfer阶段只创建物料，add阶段执行入库 简化状态检查接口，仅返回连接状态 * fix(reaction_station): 修正液体进料烧杯体积单位并增强返回结果 将液体进料烧杯的体积单位从μL改为g以匹配实际使用场景 在返回结果中添加merged_workflow和order_params字段，提供更完整的工作流信息 * feat(dispensing_station): 在任务创建返回结果中添加order_params信息 在create_order方法返回结果中增加order_params字段，以便调用方获取完整的任务参数 * fix(dispensing_station): 修改90%物料分配逻辑从分成3份改为直接使用 原逻辑将主称固体平均分成3份作为90%物料，现改为直接使用main_portion * feat(bioyond): 添加任务编码和任务ID的输出，支持批量任务创建后的状态监控 * refactor(registry): 简化设备配置中的任务结果处理逻辑 将多个单独的任务编码和ID字段合并为统一的return_info字段 更新相关描述以反映新的数据结构 * feat(工作站): 添加HTTP报送服务和任务完成状态跟踪 - 在graphio.py中添加API必需字段 - 实现工作站HTTP服务启动和停止逻辑 - 添加任务完成状态跟踪字典和等待方法 - 重写任务完成报送处理方法记录状态 - 支持批量任务完成等待和报告获取 * refactor(dispensing_station): 移除wait_for_order_completion_and_get_report功能 该功能已被wait_for_multiple_orders_and_get_reports替代，简化代码结构 * fix: 更新任务报告API错误 * fix(workstation_http_service): 修复状态查询中device_id获取逻辑 处理状态查询时安全获取device_id，避免因属性不存在导致的异常 * fix(bioyond_studio): 改进物料入库失败时的错误处理和日志记录 在物料入库API调用失败时，添加更详细的错误信息打印 同时修正station.py中对空响应和失败情况的判断逻辑 * refactor(bioyond): 优化瓶架载体的分配逻辑和注释说明 重构瓶架载体的分配逻辑，使用嵌套循环替代硬编码索引分配 添加更详细的坐标映射说明，明确PLR与Bioyond坐标的对应关系 * fix(bioyond_rpc): 修复物料入库成功时无data字段返回空的问题 当API返回成功但无data字段时，返回包含success标识的字典而非空字典 --------- Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com> Co-authored-by: Junhan Chang <changjh@dp.tech>
This commit is contained in:
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@@ -1,16 +1,242 @@
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from pylabrobot.resources import create_homogeneous_resources, Coordinate, ResourceHolder, create_ordered_items_2d
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from unilabos.resources.itemized_carrier import Bottle, BottleCarrier
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from unilabos.resources.itemized_carrier import BottleCarrier
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from unilabos.resources.bioyond.bottles import (
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BIOYOND_PolymerStation_Solid_Stock,
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BIOYOND_PolymerStation_Solid_Vial,
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BIOYOND_PolymerStation_Liquid_Vial,
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BIOYOND_PolymerStation_Solution_Beaker,
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BIOYOND_PolymerStation_Reagent_Bottle
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BIOYOND_PolymerStation_Reagent_Bottle,
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BIOYOND_PolymerStation_Flask,
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)
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# 命名约定：试剂瓶-Bottle，烧杯-Beaker，烧瓶-Flask，小瓶-Vial
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# 命名约定：试剂瓶-Bottle，烧杯-Beaker，烧瓶-Flask,小瓶-Vial
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# ============================================================================
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# 聚合站（PolymerStation）载体定义（统一入口）
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# ============================================================================
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def BIOYOND_PolymerStation_6StockCarrier(name: str) -> BottleCarrier:
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"""聚合站-6孔样品板 - 2x3布局
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参数:
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- name: 载架名称前缀
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说明:
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- 统一站点命名为 PolymerStation，使用 PolymerStation 的 Vial 资源类
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- A行（PLR y=0，对应 Bioyond 位置A01~A03）使用 Liquid_Vial（10% 分装小瓶）
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- B行（PLR y=1，对应 Bioyond 位置B01~B03）使用 Solid_Vial（90% 分装小瓶）
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"""
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# 载架尺寸 (mm)
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carrier_size_x = 127.8
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carrier_size_y = 85.5
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carrier_size_z = 50.0
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# 瓶位尺寸
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bottle_diameter = 20.0
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bottle_spacing_x = 42.0 # X方向间距
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bottle_spacing_y = 35.0 # Y方向间距
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# 计算起始位置 (居中排列)
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start_x = (carrier_size_x - (3 - 1) * bottle_spacing_x - bottle_diameter) / 2
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start_y = (carrier_size_y - (2 - 1) * bottle_spacing_y - bottle_diameter) / 2
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sites = create_ordered_items_2d(
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klass=ResourceHolder,
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num_items_x=3,
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num_items_y=2,
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dx=start_x,
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dy=start_y,
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dz=5.0,
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item_dx=bottle_spacing_x,
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item_dy=bottle_spacing_y,
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size_x=bottle_diameter,
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size_y=bottle_diameter,
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size_z=carrier_size_z,
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)
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for k, v in sites.items():
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v.name = f"{name}_{v.name}"
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carrier = BottleCarrier(
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name=name,
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size_x=carrier_size_x,
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size_y=carrier_size_y,
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size_z=carrier_size_z,
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sites=sites,
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model="BIOYOND_PolymerStation_6StockCarrier",
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)
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carrier.num_items_x = 3
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carrier.num_items_y = 2
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carrier.num_items_z = 1
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# 布局说明：
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# - num_items_x=3, num_items_y=2 表示 3列×2行
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# - create_ordered_items_2d 按先y后x的顺序创建(列优先)
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# - 索引顺序: 0=A1(x=0,y=0), 1=B1(x=0,y=1), 2=A2(x=1,y=0), 3=B2(x=1,y=1), 4=A3(x=2,y=0), 5=B3(x=2,y=1)
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#
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# Bioyond坐标映射: PLR(x,y) → Bioyond(y+1,x+1)
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# - A行(PLR y=0) → Bioyond x=1 → 10%分装小瓶
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# - B行(PLR y=1) → Bioyond x=2 → 90%分装小瓶
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ordering = ["A1", "B1", "A2", "B2", "A3", "B3"]
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for col in range(3): # 3列
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for row in range(2): # 2行
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idx = col * 2 + row # 计算索引: 列优先顺序
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if row == 0: # A行 (PLR y=0 → Bioyond x=1)
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carrier[idx] = BIOYOND_PolymerStation_Liquid_Vial(f"{ordering[idx]}")
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else: # B行 (PLR y=1 → Bioyond x=2)
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carrier[idx] = BIOYOND_PolymerStation_Solid_Vial(f"{ordering[idx]}")
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return carrier
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def BIOYOND_PolymerStation_8StockCarrier(name: str) -> BottleCarrier:
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"""聚合站-8孔样品板 - 2x4布局
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参数:
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- name: 载架名称前缀
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说明:
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- 统一站点命名为 PolymerStation，使用 PolymerStation 的 Solid_Stock 资源类
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"""
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# 载架尺寸 (mm)
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carrier_size_x = 128.0
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carrier_size_y = 85.5
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carrier_size_z = 50.0
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# 瓶位尺寸
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bottle_diameter = 20.0
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bottle_spacing_x = 30.0 # X方向间距
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bottle_spacing_y = 35.0 # Y方向间距
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# 计算起始位置 (居中排列)
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start_x = (carrier_size_x - (4 - 1) * bottle_spacing_x - bottle_diameter) / 2
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start_y = (carrier_size_y - (2 - 1) * bottle_spacing_y - bottle_diameter) / 2
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sites = create_ordered_items_2d(
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klass=ResourceHolder,
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num_items_x=4,
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num_items_y=2,
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dx=start_x,
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dy=start_y,
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dz=5.0,
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item_dx=bottle_spacing_x,
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item_dy=bottle_spacing_y,
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size_x=bottle_diameter,
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size_y=bottle_diameter,
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size_z=carrier_size_z,
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)
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for k, v in sites.items():
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v.name = f"{name}_{v.name}"
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carrier = BottleCarrier(
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name=name,
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size_x=carrier_size_x,
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size_y=carrier_size_y,
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size_z=carrier_size_z,
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sites=sites,
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model="BIOYOND_PolymerStation_8StockCarrier",
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)
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carrier.num_items_x = 4
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carrier.num_items_y = 2
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carrier.num_items_z = 1
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ordering = ["A1", "B1", "A2", "B2", "A3", "B3", "A4", "B4"]
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for i in range(8):
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carrier[i] = BIOYOND_PolymerStation_Solid_Stock(f"{name}_vial_{ordering[i]}")
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return carrier
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def BIOYOND_PolymerStation_1BottleCarrier(name: str) -> BottleCarrier:
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"""聚合站-单试剂瓶载架
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参数:
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- name: 载架名称前缀
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"""
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# 载架尺寸 (mm)
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carrier_size_x = 127.8
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carrier_size_y = 85.5
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carrier_size_z = 20.0
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# 烧杯/试剂瓶占位尺寸（使用圆形占位）
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beaker_diameter = 60.0
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# 计算中央位置
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center_x = (carrier_size_x - beaker_diameter) / 2
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center_y = (carrier_size_y - beaker_diameter) / 2
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center_z = 5.0
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carrier = BottleCarrier(
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name=name,
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size_x=carrier_size_x,
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size_y=carrier_size_y,
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size_z=carrier_size_z,
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sites=create_homogeneous_resources(
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klass=ResourceHolder,
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locations=[Coordinate(center_x, center_y, center_z)],
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resource_size_x=beaker_diameter,
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resource_size_y=beaker_diameter,
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name_prefix=name,
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),
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model="BIOYOND_PolymerStation_1BottleCarrier",
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)
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carrier.num_items_x = 1
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carrier.num_items_y = 1
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carrier.num_items_z = 1
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# 统一后缀采用 "flask_1" 命名（可按需调整）
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carrier[0] = BIOYOND_PolymerStation_Reagent_Bottle(f"{name}_flask_1")
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return carrier
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def BIOYOND_PolymerStation_1FlaskCarrier(name: str) -> BottleCarrier:
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"""聚合站-单烧杯载架
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说明:
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- 使用 BIOYOND_PolymerStation_Flask 资源类
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- 载架命名与 model 统一为 PolymerStation
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"""
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# 载架尺寸 (mm)
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carrier_size_x = 127.8
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carrier_size_y = 85.5
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carrier_size_z = 20.0
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# 烧杯尺寸
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beaker_diameter = 60.0
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# 计算中央位置
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center_x = (carrier_size_x - beaker_diameter) / 2
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center_y = (carrier_size_y - beaker_diameter) / 2
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center_z = 5.0
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carrier = BottleCarrier(
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name=name,
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size_x=carrier_size_x,
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size_y=carrier_size_y,
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size_z=carrier_size_z,
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sites=create_homogeneous_resources(
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klass=ResourceHolder,
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locations=[Coordinate(center_x, center_y, center_z)],
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resource_size_x=beaker_diameter,
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resource_size_y=beaker_diameter,
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name_prefix=name,
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),
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model="BIOYOND_PolymerStation_1FlaskCarrier",
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)
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carrier.num_items_x = 1
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carrier.num_items_y = 1
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carrier.num_items_z = 1
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carrier[0] = BIOYOND_PolymerStation_Flask(f"{name}_flask_1")
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return carrier
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# ============================================================================
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# 其他载体定义
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# ============================================================================
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def BIOYOND_Electrolyte_6VialCarrier(name: str) -> BottleCarrier:
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"""6瓶载架 - 2x3布局"""
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@@ -96,181 +322,3 @@ def BIOYOND_Electrolyte_1BottleCarrier(name: str) -> BottleCarrier:
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carrier.num_items_z = 1
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carrier[0] = BIOYOND_PolymerStation_Solution_Beaker(f"{name}_beaker_1")
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return carrier
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def BIOYOND_PolymerStation_6StockCarrier(name: str) -> BottleCarrier:
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"""6瓶载架 - 2x3布局"""
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# 载架尺寸 (mm)
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carrier_size_x = 127.8
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carrier_size_y = 85.5
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carrier_size_z = 50.0
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# 瓶位尺寸
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bottle_diameter = 20.0
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bottle_spacing_x = 42.0 # X方向间距
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bottle_spacing_y = 35.0 # Y方向间距
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# 计算起始位置 (居中排列)
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start_x = (carrier_size_x - (3 - 1) * bottle_spacing_x - bottle_diameter) / 2
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start_y = (carrier_size_y - (2 - 1) * bottle_spacing_y - bottle_diameter) / 2
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sites = create_ordered_items_2d(
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klass=ResourceHolder,
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num_items_x=3,
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num_items_y=2,
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dx=start_x,
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dy=start_y,
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dz=5.0,
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item_dx=bottle_spacing_x,
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item_dy=bottle_spacing_y,
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size_x=bottle_diameter,
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size_y=bottle_diameter,
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size_z=carrier_size_z,
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)
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for k, v in sites.items():
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v.name = f"{name}_{v.name}"
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carrier = BottleCarrier(
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name=name,
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size_x=carrier_size_x,
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size_y=carrier_size_y,
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size_z=carrier_size_z,
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sites=sites,
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model="BIOYOND_PolymerStation_6VialCarrier",
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)
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||||
carrier.num_items_x = 3
|
||||
carrier.num_items_y = 2
|
||||
carrier.num_items_z = 1
|
||||
ordering = ["A1", "A2", "A3", "B1", "B2", "B3"] # 自定义顺序
|
||||
for i in range(6):
|
||||
carrier[i] = BIOYOND_PolymerStation_Solid_Stock(f"{name}_vial_{ordering[i]}")
|
||||
return carrier
|
||||
|
||||
|
||||
def BIOYOND_PolymerStation_6VialCarrier(name: str) -> BottleCarrier:
|
||||
"""6瓶载架 - 2x3布局"""
|
||||
|
||||
# 载架尺寸 (mm)
|
||||
carrier_size_x = 127.8
|
||||
carrier_size_y = 85.5
|
||||
carrier_size_z = 50.0
|
||||
|
||||
# 瓶位尺寸
|
||||
bottle_diameter = 30.0
|
||||
bottle_spacing_x = 42.0 # X方向间距
|
||||
bottle_spacing_y = 35.0 # Y方向间距
|
||||
|
||||
# 计算起始位置 (居中排列)
|
||||
start_x = (carrier_size_x - (3 - 1) * bottle_spacing_x - bottle_diameter) / 2
|
||||
start_y = (carrier_size_y - (2 - 1) * bottle_spacing_y - bottle_diameter) / 2
|
||||
|
||||
sites = create_ordered_items_2d(
|
||||
klass=ResourceHolder,
|
||||
num_items_x=3,
|
||||
num_items_y=2,
|
||||
dx=start_x,
|
||||
dy=start_y,
|
||||
dz=5.0,
|
||||
item_dx=bottle_spacing_x,
|
||||
item_dy=bottle_spacing_y,
|
||||
|
||||
size_x=bottle_diameter,
|
||||
size_y=bottle_diameter,
|
||||
size_z=carrier_size_z,
|
||||
)
|
||||
for k, v in sites.items():
|
||||
v.name = f"{name}_{v.name}"
|
||||
|
||||
carrier = BottleCarrier(
|
||||
name=name,
|
||||
size_x=carrier_size_x,
|
||||
size_y=carrier_size_y,
|
||||
size_z=carrier_size_z,
|
||||
sites=sites,
|
||||
model="BIOYOND_PolymerStation_6VialCarrier",
|
||||
)
|
||||
carrier.num_items_x = 3
|
||||
carrier.num_items_y = 2
|
||||
carrier.num_items_z = 1
|
||||
ordering = ["A1", "A2", "A3", "B1", "B2", "B3"] # 自定义顺序
|
||||
for i in range(3):
|
||||
carrier[i] = BIOYOND_PolymerStation_Solid_Vial(f"{name}_solidvial_{ordering[i]}")
|
||||
for i in range(3, 6):
|
||||
carrier[i] = BIOYOND_PolymerStation_Liquid_Vial(f"{name}_liquidvial_{ordering[i]}")
|
||||
return carrier
|
||||
|
||||
|
||||
def BIOYOND_PolymerStation_1BottleCarrier(name: str) -> BottleCarrier:
|
||||
"""1瓶载架 - 单个中央位置"""
|
||||
|
||||
# 载架尺寸 (mm)
|
||||
carrier_size_x = 127.8
|
||||
carrier_size_y = 85.5
|
||||
carrier_size_z = 20.0
|
||||
|
||||
# 烧杯尺寸
|
||||
beaker_diameter = 60.0
|
||||
|
||||
# 计算中央位置
|
||||
center_x = (carrier_size_x - beaker_diameter) / 2
|
||||
center_y = (carrier_size_y - beaker_diameter) / 2
|
||||
center_z = 5.0
|
||||
|
||||
carrier = BottleCarrier(
|
||||
name=name,
|
||||
size_x=carrier_size_x,
|
||||
size_y=carrier_size_y,
|
||||
size_z=carrier_size_z,
|
||||
sites=create_homogeneous_resources(
|
||||
klass=ResourceHolder,
|
||||
locations=[Coordinate(center_x, center_y, center_z)],
|
||||
resource_size_x=beaker_diameter,
|
||||
resource_size_y=beaker_diameter,
|
||||
name_prefix=name,
|
||||
),
|
||||
model="BIOYOND_PolymerStation_1BottleCarrier",
|
||||
)
|
||||
carrier.num_items_x = 1
|
||||
carrier.num_items_y = 1
|
||||
carrier.num_items_z = 1
|
||||
carrier[0] = BIOYOND_PolymerStation_Reagent_Bottle(f"{name}_flask_1")
|
||||
return carrier
|
||||
|
||||
|
||||
def BIOYOND_PolymerStation_1FlaskCarrier(name: str) -> BottleCarrier:
|
||||
"""1瓶载架 - 单个中央位置"""
|
||||
|
||||
# 载架尺寸 (mm)
|
||||
carrier_size_x = 127.8
|
||||
carrier_size_y = 85.5
|
||||
carrier_size_z = 20.0
|
||||
|
||||
# 烧杯尺寸
|
||||
beaker_diameter = 70.0
|
||||
|
||||
# 计算中央位置
|
||||
center_x = (carrier_size_x - beaker_diameter) / 2
|
||||
center_y = (carrier_size_y - beaker_diameter) / 2
|
||||
center_z = 5.0
|
||||
|
||||
carrier = BottleCarrier(
|
||||
name=name,
|
||||
size_x=carrier_size_x,
|
||||
size_y=carrier_size_y,
|
||||
size_z=carrier_size_z,
|
||||
sites=create_homogeneous_resources(
|
||||
klass=ResourceHolder,
|
||||
locations=[Coordinate(center_x, center_y, center_z)],
|
||||
resource_size_x=beaker_diameter,
|
||||
resource_size_y=beaker_diameter,
|
||||
name_prefix=name,
|
||||
),
|
||||
model="BIOYOND_PolymerStation_1FlaskCarrier",
|
||||
)
|
||||
carrier.num_items_x = 1
|
||||
carrier.num_items_y = 1
|
||||
carrier.num_items_z = 1
|
||||
carrier[0] = BIOYOND_PolymerStation_Reagent_Bottle(f"{name}_bottle_1")
|
||||
return carrier
|
||||
|
||||
Reference in New Issue
Block a user