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modify bioyond/plr converter, bioyond resource registry, and tests

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This commit is contained in:
Junhan Chang
2025-10-11 04:59:59 +08:00
parent 81fd8291c5
commit 88c4d1a9d1
8 changed files with 675 additions and 29 deletions
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53
test/resources/test_converter_bioyond.py
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@@ -2,6 +2,7 @@ import pytest
import json
import os
from pylabrobot.resources import Resource as ResourcePLR
from unilabos.resources.graphio import resource_bioyond_to_plr
from unilabos.registry.registry import lab_registry
@@ -14,22 +15,62 @@ type_mapping = {
"烧杯": "BIOYOND_PolymerStation_1FlaskCarrier",
"试剂瓶": "BIOYOND_PolymerStation_1BottleCarrier",
"样品板": "BIOYOND_PolymerStation_6VialCarrier",
"分装板": "BIOYOND_PolymerStation_6VialCarrier",
"样品瓶": "BIOYOND_PolymerStation_Solid_Stock",
"90%分装小瓶": "BIOYOND_PolymerStation_Solid_Vial",
"10%分装小瓶": "BIOYOND_PolymerStation_Liquid_Vial",
}
type_uuid_mapping = {
"烧杯": "BIOYOND_PolymerStation_1FlaskCarrier",
"试剂瓶": "BIOYOND_PolymerStation_1BottleCarrier",
"样品板": "BIOYOND_PolymerStation_6VialCarrier",
"分装板": "3a14196e-5dfe-6e21-0c79-fe2036d052c4",
"样品瓶": "3a14196a-cf7d-8aea-48d8-b9662c7dba94",
"90%分装小瓶": "3a14196c-cdcf-088d-dc7d-5cf38f0ad9ea",
"10%分装小瓶": "3a14196c-76be-2279-4e22-7310d69aed68",
}
@pytest.fixture
def bioyond_materials() -> list[dict]:
def bioyond_materials_reaction() -> list[dict]:
print("加载 BioYond 物料数据...")
print(os.getcwd())
with open("bioyond_materials.json", "r", encoding="utf-8") as f:
data = json.load(f)["data"]
with open("bioyond_materials_reaction.json", "r", encoding="utf-8") as f:
data = json.load(f)
print(f"加载了 {len(data)} 条物料数据")
return data
def test_bioyond_to_plr(bioyond_materials) -> list[dict]:
@pytest.fixture
def bioyond_materials_liquidhandling_1() -> list[dict]:
print("加载 BioYond 物料数据...")
print(os.getcwd())
with open("bioyond_materials_liquidhandling_1.json", "r", encoding="utf-8") as f:
data = json.load(f)
print(f"加载了 {len(data)} 条物料数据")
return data
@pytest.fixture
def bioyond_materials_liquidhandling_2() -> list[dict]:
print("加载 BioYond 物料数据...")
print(os.getcwd())
with open("bioyond_materials_liquidhandling_2.json", "r", encoding="utf-8") as f:
data = json.load(f)
print(f"加载了 {len(data)} 条物料数据")
return data
@pytest.mark.parametrize("materials_fixture", [
"bioyond_materials_reaction",
"bioyond_materials_liquidhandling_1",
])
def test_bioyond_to_plr(materials_fixture, request) -> list[dict]:
materials = request.getfixturevalue(materials_fixture)
deck = BIOYOND_PolymerReactionStation_Deck("test_deck")
print("将 BioYond 物料数据转换为 PLR 格式...")
output = resource_bioyond_to_plr(bioyond_materials, type_mapping=type_mapping, deck=deck)
output = resource_bioyond_to_plr(materials, type_mapping=type_mapping, deck=deck)
print(deck.summary())
print([resource.serialize() for resource in output])
print([resource.serialize_all_state() for resource in output])
json.dump(deck.serialize(), open("test.json", "w", encoding="utf-8"), indent=4)