Ready for open source (#47)

* Create app/main API

* create example device

* create ROS backend and example device SDK Wrapper

* Add ROS host and host starting from app.py

* Add gripper device and mock implementation

* add "status_types" & "action_types" to ROS device decorator

* add ActionServer debug example

* [bugfix] complete mock gripper example

* ROS Backend Host for Device action calling and Resource management

* add conda/mamba ENV file

* add host_node communication with app/main.py

* add action message value mappings and converters

* Update ilabos.yaml

* Update issue templates

* example devices.json and resources.json

* Fix Device wrapper to use async property and actions (#7)

* Fix Device wrapper to use async property and actions

* Resolve #1 : support async get methods and actions. Give new examples.

* add both sync/async GRBL controller SDK

* 2 call device actions from appmainpy api to ros hostpy (#8)

* feature: add job

* fix:node start

* feature:add get job status

* fix:get device

* clean

* Resolve #5 device connection diagram and workflow compilation support (#9)

* add syringe pump device and its compilation using device connection diagram

* add RunzeSyringePump real device with ROS2 example

* Prototype machine with 1 pump and 1 CNC

* add ROS2ProtocolNode and related functions

* add ilabos_msgs (to use PumpTransfer action)

* add example device connection graph

* refactor protocol_node code into separate file

* add ROS2SerialNode

* add SerialCommand srv in ilabos_msgs

* add pump_protocol example, and fix bugs

* [fix] serial service: avoid async service deadlock by directly call serial `send_command`

* use SendCmd instead of SingleJointPosition for valve control

* initialize device connection graph when server starts

* Fix #5: async workflow execution (#16)

* add rclpyx and protocol example for async-native workflow

* use async in ROS2ProtocolNode, and host initialization

* add examples of "ros-async" protocol implementation, and `run_in_event_loop` for using native async functions

* use "ros-async" in protocols and device nodes

* fix pump_protocol: push to 0.0 μL

* Envs, docs, and conda recipes (#19)

* update ENV: use python 3.11 and deprecate ros-humble-gazebo-ros

* add ilabos-msgs conda recipe

* Update ilabos.yaml

* fix recipe and env yaml

* Add sphinx docs

* add aichemeco

* add bioyong

* add bioyong

* Support XDL devices & protocols (#20)

* [Feature] support multiple protocols in a single ProtocolNode

* add Junjie's code

* Support "Clean" protocol

* Update Grignard_flow_batchreact_single_pumpvalve.json

* test_grignard_add

* add stir device node and example

* Update device_node.py

add print_publish flag to control the node's log output

* NH4Cl_add

* add "HeaterStirrer" device and "HeatChill" action

* add wait time after each pump action for equilibration

* fix stir

* add Separate protocol

* Refactor Separator device and Stir action

* add rotavap_node

* fix stir

* add chiller node

* Move rinsings into PumpTransfer

* Fix SeparateProtocol under refactored Separator device and Stir action

* Supports automatically add new protocol action_types

* fix PumpTransfer protocol because of rinsing

* Add Rotavap and Chiller devices

* fix SeparateProtocol

* add EvaporateProtocol

* add rotavap devices config

* fix HeaterStirrer and SeparatorController IO

* Fix automatically add new protocol action_types

* Add HeaterStirrer and SeparatorController device config

* fix pump protocols

* Fix Evaporate action

* Update evaporate_protocol.py

* add temp_sensor node and add function remap

* update docs

---------

Co-authored-by: 王俊杰 <1800011822@pku.edu.cn>
Co-authored-by: q434343 <554662886@qq.com>

* fix aichemeco

* [Bugfix] fix Windows conda packaging

* add file upload api

* update dependencies: force to use 3.11 and remove conflict in WIN64 and OSX64

* update dependencies: force to use 3.11 and remove conflict in WIN64 and OSX64

* Create aichemeco_simple.py

* fix

* update

* add aichemeco file

* MQTT [1/2]: action start (#25)

* add mq

* fix

* clean

* add class

* fix excel

* update bioyong

* add api

* fix

---------

Co-authored-by: caok@dp.tech <xiaoyeqiannian@163.com>

* motor & grasp

* Add Grasp motor support and enhance EleGripper class

- Introduced a new motor configuration for Grasp in sjtu.json.
- Updated EleGripper class to inherit from UniversalDriver and added status property.
- Implemented move_and_rotate method for coordinated movement.
- Adjusted threading logic in EleGripper initialization.
- Registered Grasp motor in ROS2 device node configuration.

This commit enhances the motor control capabilities by integrating the Grasp motor and improving the existing EleGripper functionality.

* fix read data lenth

* Update Grasp.py

* MQTT (2/2): publish Device Status, Action Feedback & Results (#27)

* Add bridges in HostNode for device_status publishing

* Add "bridges" selection (fastapi & mqtt) when app start

* add MQ feedback & result publisher, and fix message converter

* fix UUID converting between ROS and MQ

* lint api model.py

* Continuous controllers: PID, MPC, custom controllers etc. (#23)

* add controller config & wrapper

* add controller setup at app.main

* control loop example

* fix com port

* add agv , ur_arm and raman

* MQTT (3/4): Unified Resources and Sync when starting the server (#28)

* update http upload api

* generate uuid when init device

* example resource json

* fix

* add new example full-content json (device, resource, graph)

* fix full-content json and related reading code

* fix

* add json_schema when initialize resources

* fix

* update schema

* refactor heaterstirrer.dalong

* fix

* fix refactor heaterstirrer.dalong

* refactor syringepump.runze: use ml instead of μL

* Update ilabos/ros/host.py

Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com>

---------

Co-authored-by: 王俊杰 <1800011822@pku.edu.cn>
Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com>

* Distributed initialization with self-organizing network (#29)

* add distributed launching option "--without_host"

* fix

---------

Co-authored-by: 王俊杰 <1800011822@pku.edu.cn>

* Refactor Workstation: Add resource service and tracking (#30)

* move ilabos/ros/rpc to ilabos/device_comms/rpc, and merge bioyond/aichemeco files under /devices

* add Resource srv and message_converter

* move graphio to ilabos/resources

* refactor resources type conversion

* add resource clients in device_node

* add mock resources service

* pass Gripper1 resource test

* update http resource services

* add AGV compile function

* add AGV transfer protocol

* update full mock_gripper edit_id example

* update full mock_gripper edit_id example

* get and update resource also in protocol_node

* mock resource update in AichemecoHiwo

* Create HT_hiwo.json

* add children in resources

* bugfixes

* fix rpc

* add Revvity winprep

---------

Co-authored-by: wjjxxx <43375851+wjjxxx@users.noreply.github.com>
Co-authored-by: 3218923350 <105201755+3218923350@users.noreply.github.com>

* Distributed launch (2/2): distributed resource create (#32)

* add resource_add request to host for slave mode

* add AGV

* fix protocol resources

* optimize host callbacks

* bugfixes

* add revvity registry

---------

Co-authored-by: 王俊杰 <1800011822@pku.edu.cn>
Co-authored-by: wjjxxx <43375851+wjjxxx@users.noreply.github.com>

* Refactor Driver Files Structure (#33)

* Integration with pywinauto & recorder
Added execute run and initialize procdure

* 酶标仪状态检测、使用示例,整体流程待测试

* nivo ready version

* Add HPLC driver and example script

- Introduced HPLCDriver class for managing HPLC device status and operations.
- Implemented device status monitoring and command execution via ROS2 actions.
- Added example script (hplc.py) demonstrating how to run commands on the HPLC device.
- Created PlayerUtil and UniversalDriver classes for shared functionality across devices.
- Refactored NivoDriver to utilize the new UniversalDriver structure.
- Enhanced error handling and process management in the NivoDriver.

* 修复start的错误定位

* hplc tested ok

* relative path to build msgs

* template_driver & jiageng devices

* fetch correct status type and action type

* fix mtype fetch

* gpc bus integration

* ilab build

* remove chs

* recipe rename

* modbus update 1

* json available

* hplc & modbus rewrite

* Update AgilentHPLC.py

hplc datafile reader

* move ilabos/ros/rpc to ilabos/device_comms/rpc, and merge bioyond/aichemeco files under /devices

* modbus分设备

* gpc

* gpc 2

* fix address

* default register node

* fix MainScreenGPC

* add Resource srv and message_converter

* move graphio to ilabos/resources

* refactor resources type conversion

* add resource clients in device_node

* add mock resources service

* pass Gripper1 resource test

* update http resource services

* add AGV compile function

* add AGV transfer protocol

* update recipe.yaml

* update full mock_gripper edit_id example

* update full mock_gripper edit_id example

* get and update resource also in protocol_node

* mock resource update in AichemecoHiwo

* feat: add other jiageng PLC device code

* ilabos compile

* correct format

* correct recipe format

* correct setup.py format

* remove unnecessary files

* remove unnecessary files

* Create HT_hiwo.json

* add children in resources

* hplc support sample_id

* correct hplc sample_id

* correct hplc sample_id

* hplc upload

* fix type hint

* oss upload tested ver

* recipe yaml fix for linux

* update installation yaml

* refactor: moved all driver files according to its feat

* merge main to dev

---------

Co-authored-by: 王俊杰 <2201110460@stu.pku.edu.cn>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: jiawei <miaojiawei@dp.tech>

* add: NMR LH and RU device control (#34)

* Add Registry for device drivers and Support GraphML (#35)

* read chemputer graphml

* read graphml in app/main

* add devices in ros/devices

* add schema for devices

* read registry directory and initialize when entry from main

* Delete devices.py

* Update add_protocol.md

* delete unecessary files

* feat: 2278 devices registry yaml (#36)

* read chemputer graphml

* read graphml in app/main

* add devices in ros/devices

* add schema for devices

* read registry directory and initialize when entry from main

* Delete devices.py

* add: NMR LH and RU device control

* fix: modify jiageng devices registry

---------

Co-authored-by: Junhan Chang <changjh@pku.edu.cn>

* Device/Resource Registry and GraphML support (#37)

* add resource type conversion to PLR

* add resource registry and test

* add docs

* fix registry

* add solenoid_valve_mock, its registry and test

* fix registry for directly using examples

* add EvacuateAndRefillProtocol and testcases

* allow function sequence call in ACTION

* add read & write & extra_info for hardware_interface

* Update device_node.py

* add solenoid valve

* add doc developer guide yaml

* fixes for starting IK station

* add graphml grouping parser

* fix graphml grouping parser

* add communication edge parser

* fix io solenoid valve

* Update .gitignore

* Update plates.yaml

---------

Co-authored-by: ColumbiaCC <2100011801@stu.pku.edu.cn>

* Uni-Lab Doc v0.2 (#39)

* add Uni-Lab docs

* change doc name

* Dev (#41)

* Integration with pywinauto & recorder
Added execute run and initialize procdure

* 酶标仪状态检测、使用示例,整体流程待测试

* nivo ready version

* Add HPLC driver and example script

- Introduced HPLCDriver class for managing HPLC device status and operations.
- Implemented device status monitoring and command execution via ROS2 actions.
- Added example script (hplc.py) demonstrating how to run commands on the HPLC device.
- Created PlayerUtil and UniversalDriver classes for shared functionality across devices.
- Refactored NivoDriver to utilize the new UniversalDriver structure.
- Enhanced error handling and process management in the NivoDriver.

* 修复start的错误定位

* hplc tested ok

* relative path to build msgs

* template_driver & jiageng devices

* fetch correct status type and action type

* fix mtype fetch

* gpc bus integration

* ilab build

* remove chs

* recipe rename

* modbus update 1

* json available

* hplc & modbus rewrite

* Update AgilentHPLC.py

hplc datafile reader

* move ilabos/ros/rpc to ilabos/device_comms/rpc, and merge bioyond/aichemeco files under /devices

* modbus分设备

* gpc

* gpc 2

* fix address

* default register node

* fix MainScreenGPC

* add Resource srv and message_converter

* move graphio to ilabos/resources

* refactor resources type conversion

* add resource clients in device_node

* add mock resources service

* pass Gripper1 resource test

* update http resource services

* add AGV compile function

* add AGV transfer protocol

* update recipe.yaml

* update full mock_gripper edit_id example

* update full mock_gripper edit_id example

* get and update resource also in protocol_node

* mock resource update in AichemecoHiwo

* feat: add other jiageng PLC device code

* ilabos compile

* correct format

* correct recipe format

* correct setup.py format

* remove unnecessary files

* remove unnecessary files

* Create HT_hiwo.json

* add children in resources

* hplc support sample_id

* correct hplc sample_id

* correct hplc sample_id

* hplc upload

* fix type hint

* oss upload tested ver

* recipe yaml fix for linux

* update installation yaml

* refactor: moved all driver files according to its feat

* merge main to dev

* add HPLC registry and json

* 升级 ros2-distro-mutex 依赖版本至 0.6

* 修改 ros2-distro-mutex 依赖版本为通配符匹配

* 更新 ros-humble-ilabos-msgs 依赖为 robostack-humble 命名空间

* add resource type conversion to PLR

* add resource registry and test

* feat: 更新oss上传

* fix device id

* add docs

* fix registry

* add solenoid_valve_mock, its registry and test

* fix registry for directly using examples

* add EvacuateAndRefillProtocol and testcases

* allow function sequence call in ACTION

* add read & write & extra_info for hardware_interface

* Update device_node.py

* add solenoid valve

* add doc developer guide yaml

* use robostack-staging

* rclpy version test

* lower rclpy

* ensure 0.6* env

* fixes for starting IK station

* add graphml grouping parser

* fix graphml grouping parser

* add communication edge parser

* fix io solenoid valve

* Update .gitignore

* Update plates.yaml

* Feature/device node later init (#40)

* 修改config路径,方便后续打包
增加device_node打印

* 支持plr序列化/init创建

* 统一命名

* import mgr
logger optimize
banner print

* 日志OK

* fix unicorn frame

* banner print

* correct import format

* file path changes

* 取消后补全,在加载设备的时候直接替换

* converter update

* web page update

* 在线device更新,node继承替换

* 修复动作、状态的类型缺失 和 命令提示

* web功能实现结束

* host节点更改完成
新增status时间戳管理
新增每10s动态发现其他node

* ros2类型的节点也应该被包一次

* 修复类型提示

* websocket 动态显示状态

* add workflow & book theme for docs

* add workflow & book theme for docs

* fix workflow build

* fix workflow build

* 理清启动关系

* stm32 example

* mac . name

* device_instance device_cls

* 新增config添加方式
更新mqtt提示

* plr test

* 移动is_host_mode
新增slave_no_host

* 确保config优先修改生效

* fix graph io

* 支持带参数传入

* 支持物料解析

* 支持物料解析

* device为空的时候不进行绑定或初始化

* protocol node new

* protocol node runnable

* protocol node runnable

---------

Co-authored-by: 王俊杰 <2201110460@stu.pku.edu.cn>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: jiawei <miaojiawei@dp.tech>
Co-authored-by: ColumbiaCC <2100011801@stu.pku.edu.cn>

* Dev (#45)

* Integration with pywinauto & recorder
Added execute run and initialize procdure

* 酶标仪状态检测、使用示例,整体流程待测试

* nivo ready version

* Add HPLC driver and example script

- Introduced HPLCDriver class for managing HPLC device status and operations.
- Implemented device status monitoring and command execution via ROS2 actions.
- Added example script (hplc.py) demonstrating how to run commands on the HPLC device.
- Created PlayerUtil and UniversalDriver classes for shared functionality across devices.
- Refactored NivoDriver to utilize the new UniversalDriver structure.
- Enhanced error handling and process management in the NivoDriver.

* 修复start的错误定位

* hplc tested ok

* relative path to build msgs

* template_driver & jiageng devices

* fetch correct status type and action type

* fix mtype fetch

* gpc bus integration

* ilab build

* remove chs

* recipe rename

* modbus update 1

* json available

* hplc & modbus rewrite

* Update AgilentHPLC.py

hplc datafile reader

* move ilabos/ros/rpc to ilabos/device_comms/rpc, and merge bioyond/aichemeco files under /devices

* modbus分设备

* gpc

* gpc 2

* fix address

* default register node

* fix MainScreenGPC

* add Resource srv and message_converter

* move graphio to ilabos/resources

* refactor resources type conversion

* add resource clients in device_node

* add mock resources service

* pass Gripper1 resource test

* update http resource services

* add AGV compile function

* add AGV transfer protocol

* update recipe.yaml

* update full mock_gripper edit_id example

* update full mock_gripper edit_id example

* get and update resource also in protocol_node

* mock resource update in AichemecoHiwo

* feat: add other jiageng PLC device code

* ilabos compile

* correct format

* correct recipe format

* correct setup.py format

* remove unnecessary files

* remove unnecessary files

* Create HT_hiwo.json

* add children in resources

* hplc support sample_id

* correct hplc sample_id

* correct hplc sample_id

* hplc upload

* fix type hint

* oss upload tested ver

* recipe yaml fix for linux

* update installation yaml

* refactor: moved all driver files according to its feat

* merge main to dev

* add HPLC registry and json

* 升级 ros2-distro-mutex 依赖版本至 0.6

* 修改 ros2-distro-mutex 依赖版本为通配符匹配

* 更新 ros-humble-ilabos-msgs 依赖为 robostack-humble 命名空间

* add resource type conversion to PLR

* add resource registry and test

* feat: 更新oss上传

* fix device id

* add docs

* fix registry

* add solenoid_valve_mock, its registry and test

* fix registry for directly using examples

* add EvacuateAndRefillProtocol and testcases

* allow function sequence call in ACTION

* add read & write & extra_info for hardware_interface

* Update device_node.py

* add solenoid valve

* add doc developer guide yaml

* use robostack-staging

* rclpy version test

* lower rclpy

* ensure 0.6* env

* fixes for starting IK station

* add graphml grouping parser

* fix graphml grouping parser

* add communication edge parser

* fix io solenoid valve

* Update .gitignore

* Update plates.yaml

* Feature/device node later init (#40)

* 修改config路径,方便后续打包
增加device_node打印

* 支持plr序列化/init创建

* 统一命名

* import mgr
logger optimize
banner print

* 日志OK

* fix unicorn frame

* banner print

* correct import format

* file path changes

* 取消后补全,在加载设备的时候直接替换

* converter update

* web page update

* 在线device更新,node继承替换

* 修复动作、状态的类型缺失 和 命令提示

* web功能实现结束

* host节点更改完成
新增status时间戳管理
新增每10s动态发现其他node

* ros2类型的节点也应该被包一次

* 修复类型提示

* websocket 动态显示状态

* add workflow & book theme for docs

* add workflow & book theme for docs

* fix workflow build

* fix workflow build

* 理清启动关系

* stm32 example

* mac . name

* device_instance device_cls

* 新增config添加方式
更新mqtt提示

* plr test

* 移动is_host_mode
新增slave_no_host

* 确保config优先修改生效

* fix graph io

* 支持带参数传入

* 支持物料解析

* 支持物料解析

* device为空的时候不进行绑定或初始化

* protocol node new

* protocol node runnable

* protocol node runnable

* Feature/device node later init (#42)

* 修改config路径,方便后续打包
增加device_node打印

* 支持plr序列化/init创建

* 统一命名

* import mgr
logger optimize
banner print

* 日志OK

* fix unicorn frame

* banner print

* correct import format

* file path changes

* 取消后补全,在加载设备的时候直接替换

* converter update

* web page update

* 在线device更新,node继承替换

* 修复动作、状态的类型缺失 和 命令提示

* web功能实现结束

* host节点更改完成
新增status时间戳管理
新增每10s动态发现其他node

* ros2类型的节点也应该被包一次

* 修复类型提示

* websocket 动态显示状态

* add workflow & book theme for docs

* add workflow & book theme for docs

* fix workflow build

* fix workflow build

* 理清启动关系

* stm32 example

* mac . name

* device_instance device_cls

* 新增config添加方式
更新mqtt提示

* plr test

* 移动is_host_mode
新增slave_no_host

* 确保config优先修改生效

* fix graph io

* 支持带参数传入

* 支持物料解析

* 支持物料解析

* device为空的时候不进行绑定或初始化

* protocol node new

* protocol node runnable

* protocol node runnable

* action

* plr suc

* plr suc!!

* plr suc!!

* plr suc!!

* plr msgs

* Feature/device node later init (#43)

* 修改config路径,方便后续打包
增加device_node打印

* 支持plr序列化/init创建

* 统一命名

* import mgr
logger optimize
banner print

* 日志OK

* fix unicorn frame

* banner print

* correct import format

* file path changes

* 取消后补全,在加载设备的时候直接替换

* converter update

* web page update

* 在线device更新,node继承替换

* 修复动作、状态的类型缺失 和 命令提示

* web功能实现结束

* host节点更改完成
新增status时间戳管理
新增每10s动态发现其他node

* ros2类型的节点也应该被包一次

* 修复类型提示

* websocket 动态显示状态

* add workflow & book theme for docs

* add workflow & book theme for docs

* fix workflow build

* fix workflow build

* 理清启动关系

* stm32 example

* mac . name

* device_instance device_cls

* 新增config添加方式
更新mqtt提示

* plr test

* 移动is_host_mode
新增slave_no_host

* 确保config优先修改生效

* fix graph io

* 支持带参数传入

* 支持物料解析

* 支持物料解析

* device为空的时候不进行绑定或初始化

* protocol node new

* protocol node runnable

* protocol node runnable

* action

* plr suc

* plr suc!!

* plr suc!!

* plr suc!!

* plr msgs

* plr

* action

* plr reg fix

* Feature/device node later init (#44)

* 修改config路径,方便后续打包
增加device_node打印

* 支持plr序列化/init创建

* 统一命名

* import mgr
logger optimize
banner print

* 日志OK

* fix unicorn frame

* banner print

* correct import format

* file path changes

* 取消后补全,在加载设备的时候直接替换

* converter update

* web page update

* 在线device更新,node继承替换

* 修复动作、状态的类型缺失 和 命令提示

* web功能实现结束

* host节点更改完成
新增status时间戳管理
新增每10s动态发现其他node

* ros2类型的节点也应该被包一次

* 修复类型提示

* websocket 动态显示状态

* add workflow & book theme for docs

* add workflow & book theme for docs

* fix workflow build

* fix workflow build

* 理清启动关系

* stm32 example

* mac . name

* device_instance device_cls

* 新增config添加方式
更新mqtt提示

* plr test

* 移动is_host_mode
新增slave_no_host

* 确保config优先修改生效

* fix graph io

* 支持带参数传入

* 支持物料解析

* 支持物料解析

* device为空的时候不进行绑定或初始化

* protocol node new

* protocol node runnable

* protocol node runnable

* action

* plr suc

* plr suc!!

* plr suc!!

* plr suc!!

* plr msgs

* plr

* fix convert error
fix async logic error
added async error print

* new device test

* test resource add

* test resource add

* test resource add

* test resource add

* local env setup

* node type fix
temp fix root_node error
fix convert res from type error

* resource tracker

* fix bug from qhh

* fix bug from qhh

* fix bug from qhh

* fix bug from qhh

* refactor MQTT client logging and connection handling; update group ID in config

* driver_params allow empty

* allow other init param

* fix driver param and enhance type hint

* refactor MQConfig to use double quotes for string literals

* fix wrong function calling

* fix wrong function calling

* fix log for mac

* fix networkx compatibility

* add mqtt loggers

* add action to jsonschema converter

* random client id

* type converter & registry

* correct conversion

* fix action publish only from discovered devices

* add "Bio" tag for action doc generation

* 改进module提示

* Fix doc

* mqtt不连接也可用
性价样例提示

* add docs

* 更新plr test案例

* Update intro.md

* 更新有机案例

* skip

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: Junhan Chang <1700011741@pku.edu.cn>

---------

Co-authored-by: 王俊杰 <2201110460@stu.pku.edu.cn>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: jiawei <miaojiawei@dp.tech>
Co-authored-by: ColumbiaCC <2100011801@stu.pku.edu.cn>
Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: Junhan Chang <1700011741@pku.edu.cn>

* Canonicalize before Open Source (#46)

* big big refactor try01

* refactor 02

---------

Co-authored-by: ck <xiaoyeqiannian@163.com>
Co-authored-by: 王俊杰 <1800011822@pku.edu.cn>
Co-authored-by: q434343 <554662886@qq.com>
Co-authored-by: Xuwznln <xuwznln@gmail.com>
Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com>
Co-authored-by: wjjxxx <43375851+wjjxxx@users.noreply.github.com>
Co-authored-by: 3218923350 <105201755+3218923350@users.noreply.github.com>
Co-authored-by: Xuwznln <1023025701@qq.com>
Co-authored-by: 王俊杰 <2201110460@stu.pku.edu.cn>
Co-authored-by: jiawei <miaojiawei@dp.tech>
Co-authored-by: Jiawei <91898272+jiawei723@users.noreply.github.com>
Co-authored-by: ColumbiaCC <2100011801@stu.pku.edu.cn>
Co-authored-by: Harvey Que <Q-Query@outlook.com>
This commit is contained in:
Junhan Chang
2025-04-17 15:09:58 +08:00
committed by GitHub
parent 7ccb425e39
commit a62a695812
266 changed files with 40772 additions and 2 deletions

View File

@@ -0,0 +1,846 @@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!--Created by yFiles for HTML 2.6.0.4-->
<graphml xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns http://www.yworks.com/xml/schema/graphml.html/2.0/ygraphml.xsd " xmlns="http://graphml.graphdrawing.org/xmlns" xmlns:demostyle2="http://www.yworks.com/yFilesHTML/demos/FlatDemoStyle/2.0" xmlns:demostyle="http://www.yworks.com/yFilesHTML/demos/FlatDemoStyle/1.0" xmlns:icon-style="http://www.yworks.com/yed-live/icon-style/1.0" xmlns:bpmn="http://www.yworks.com/xml/yfiles-bpmn/2.0" xmlns:demotablestyle="http://www.yworks.com/yFilesHTML/demos/FlatDemoTableStyle/1.0" xmlns:uml="http://www.yworks.com/yFilesHTML/demos/UMLDemoStyle/1.0" xmlns:GraphvizNodeStyle="http://www.yworks.com/yFilesHTML/graphviz-node-style/1.0" xmlns:Vue2jsNodeStyle="http://www.yworks.com/demos/yfiles-vuejs-node-style/1.0" xmlns:Vue3jsNodeStyle="http://www.yworks.com/demos/yfiles-vue-node-style/3.0" xmlns:explorer-style="http://www.yworks.com/data-explorer/1.0" xmlns:y="http://www.yworks.com/xml/yfiles-common/3.0" xmlns:x="http://www.yworks.com/xml/yfiles-common/markup/3.0" xmlns:yjs="http://www.yworks.com/xml/yfiles-for-html/2.0/xaml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<key id="d0" for="node" attr.type="int" attr.name="zOrder" y:attr.uri="http://www.yworks.com/xml/yfiles-z-order/1.0/zOrder"/>
<key id="d1" for="node" attr.type="boolean" attr.name="Expanded" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/folding/Expanded">
<default>true</default>
</key>
<key id="d2" for="node" attr.type="string" attr.name="url"/>
<key id="d3" for="node" attr.type="string" attr.name="description"/>
<key id="d4" for="node" attr.type="string" attr.name="NodeLabels" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/NodeLabels"/>
<key id="d5" for="node" attr.type="string" attr.name="NodeGeometry" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/NodeGeometry"/>
<key id="d6" for="all" attr.name="UserTags" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/UserTags"/>
<key id="d7" for="node" attr.name="NodeStyle" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/NodeStyle"/>
<key id="d8" for="node" attr.name="NodeViewState" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/folding/1.1/NodeViewState"/>
<key id="d9" for="edge" attr.type="string" attr.name="url"/>
<key id="d10" for="edge" attr.type="string" attr.name="description"/>
<key id="d11" for="edge" attr.type="string" attr.name="EdgeLabels" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/EdgeLabels"/>
<key id="d12" for="edge" attr.type="string" attr.name="EdgeGeometry" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/EdgeGeometry"/>
<key id="d13" for="edge" attr.type="string" attr.name="EdgeStyle" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/EdgeStyle"/>
<key id="d14" for="edge" attr.type="string" attr.name="EdgeViewState" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/folding/1.1/EdgeViewState"/>
<key id="d19" attr.name="SharedData" y:attr.uri="http://www.yworks.com/xml/yfiles-common/2.0/SharedData"/>
<data key="d19">
<y:SharedData>
<yjs:SolidColorFill x:Key="18" color="LightGrey"/>
<yjs:GroupNodeStyle x:Key="19" tabWidth="30" tabHeight="20" tabInset="3" tabPosition="TOP_TRAILING" groupIcon="MINUS" iconForegroundFill="#FF0B7189" iconOffset="2" minimumContentAreaSize="0,0" hitTransparentContentArea="true" tabBackgroundFill="#FF0B7189" contentAreaFill="#FFFFFFFF" tabFill="#FF9DC6D0" cssClass="y-group-node">
<yjs:GroupNodeStyle.stroke>
<yjs:Stroke fill="#FF0B7189" lineCap="SQUARE" thickness="2"/>
</yjs:GroupNodeStyle.stroke>
</yjs:GroupNodeStyle>
<y:FreeEdgeLabelModel x:Key="20"/>
<yjs:SolidColorFill x:Key="21" color="LightGrey"/>
<yjs:Arrow x:Key="22" type="NONE"/>
<yjs:SolidColorFill x:Key="23" color="LightGrey"/>
<yjs:SolidColorFill x:Key="24" color="#FF0E0E10"/>
<yjs:SolidColorFill x:Key="25" color="#FFA72920"/>
<yjs:SolidColorFill x:Key="26" color="#FFF6B600"/>
<yjs:SolidColorFill x:Key="27" color="#FF61993B"/>
<yjs:SolidColorFill x:Key="28" color="#FF7E4B26"/>
<yjs:SolidColorFill x:Key="29" color="#FFF67828"/>
<yjs:SolidColorFill x:Key="30" color="#FF0E0E10"/>
<yjs:SolidColorFill x:Key="31" color="#FFF6B600"/>
<yjs:SolidColorFill x:Key="32" color="#FFA72920"/>
<yjs:SolidColorFill x:Key="33" color="Black"/>
<yjs:SolidColorFill x:Key="34" color="Black"/>
<yjs:SolidColorFill x:Key="35" color="#FF0E0E10"/>
<yjs:SolidColorFill x:Key="36" color="#FFF6B600"/>
<yjs:SolidColorFill x:Key="37" color="#FF61993B"/>
<yjs:SolidColorFill x:Key="38" color="Black"/>
<yjs:DefaultLabelStyle x:Key="39" horizontalTextAlignment="CENTER" font="{y:GraphMLReference 9}" autoFlip="false" textFill="{y:GraphMLReference 8}"/>
<yjs:Stroke x:Key="40" fill="{y:GraphMLReference 18}" miterLimit="1.45"/>
<yjs:Arrow x:Key="41" stroke="#FFD3D3D3" fill="{y:GraphMLReference 18}"/>
<yjs:PolylineEdgeStyle x:Key="42" stroke="{y:GraphMLReference 40}" targetArrow="{y:GraphMLReference 41}" sourceArrow="{y:GraphMLReference 22}"/>
</y:SharedData>
</data>
<graph id="G" edgedefault="directed">
<data key="d6">
<y:Json>{"version":"2.0.0","origin":"yed-live","theme":{"name":"light","version":"1.0.0"},"layout":"layout-hierarchic","config":{"p_useDrawingAsSketch":false,"p_selectedElementsIncrementally":false,"p_nodeToNodeDistance":30,"p_automaticEdgeGroupingEnabled":false,"p_considerNodeLabels":true,"p_edgeLabeling":1,"p_orientation":0,"p_edgeRouting":0}}</y:Json>
</data>
<node id="n0">
<data key="d0">12</data>
<data key="d4">flask_separator_bottom</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n1">
<data key="d0">13</data>
<data key="d4">flask_NH4Cl</data>
<data key="d5">
<y:RectD X="568.1111111111111" Y="428" Width="100" Height="141"/>
</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n2">
<data key="d0">14</data>
<data key="d4">flask_CH2Cl2</data>
<data key="d5">
<y:RectD X="430.4087301587302" Y="428" Width="100" Height="141"/>
</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n3">
<data key="d0">15</data>
<data key="d4">flask_acetone</data>
<data key="d5">
<y:RectD X="295.36944444444447" Y="428" Width="100" Height="141"/>
</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n4">
<data key="d0">17</data>
<data key="d4">waste_workup</data>
<data key="d5">
<y:RectD X="1587.703373015873" Y="1172.5" Width="100" Height="100"/>
</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 2}"/>
</data>
</node>
<node id="n5">
<data key="d0">26</data>
<data key="d4">flask_H2O</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n6">
<data key="d0">27</data>
<data key="d4">flask_NaHCO3</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n7">
<data key="d0">32</data>
<data key="d4">reactor_reactor</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 3}"/>
</data>
</node>
<node id="n8">
<data key="d0">33</data>
<data key="d4">flask_rv_bottom</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n9">
<data key="d0">34</data>
<data key="d4">rotavap</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 4}"/>
</data>
</node>
<node id="n10">
<data key="d0">35</data>
<data key="d4">flask_holding</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n11">
<data key="d0">36</data>
<data key="d4">flask_separator_top</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 5}"/>
</data>
</node>
<node id="n12">
<data key="d0">37</data>
<data key="d4">flask_separator_bottom</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n13">
<data key="d0">41</data>
<data key="d4">flask_eluent</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n14">
<data key="d0">42</data>
<data key="d4">column_top</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 6}"/>
</data>
</node>
<node id="n15">
<data key="d0">43</data>
<data key="d4">flask_column_bottom</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n16">
<data key="d0">44</data>
<data key="d4">flask_grinard</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n17">
<data key="d0">45</data>
<data key="d4"><![CDATA[dry air]]></data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 6}"/>
</data>
</node>
<node id="n18">
<data key="d0">46</data>
<data key="d4">dry_column_top</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 6}"/>
</data>
</node>
<node id="n19">
<data key="d0">47</data>
<data key="d4">flask_dry_column_bottom</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 1}"/>
</data>
</node>
<node id="n20">
<data key="d0">48</data>
<data key="d4">valve_ext</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 16}"/>
</data>
</node>
<!-- <node id="n21">
<data key="d0">49</data>
<data key="d7">
<y:GraphMLReference ResourceKey="19"/>
</data>
<graph id="n21:" edgedefault="directed"> -->
<node id="n21::n0">
<data key="d0">0</data>
<data key="d4">pump_reagents_1</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 17}"/>
</data>
</node>
<node id="n21::n1">
<data key="d0">1</data>
<data key="d4">valve_reagents_1</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 16}"/>
</data>
</node>
<edge id="n21::e0" source="n21::n0" target="n21::n1" sourceport="p0" targetport="p0">
<data key="d11">-1</data>
<data key="d13">
<yjs:PolylineEdgeStyle stroke="{y:GraphMLReference 40}" targetArrow="{y:GraphMLReference 41}" sourceArrow="{y:GraphMLReference 22}"/>
</data>
</edge>
<!-- </graph>
</node> -->
<!-- <node id="n22">
<data key="d0">50</data>
<data key="d7">
<y:GraphMLReference ResourceKey="19"/>
</data>
<graph id="n22:" edgedefault="directed"> -->
<node id="n22::n0">
<data key="d0">0</data>
<data key="d4">pump_workup</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 17}"/>
</data>
</node>
<node id="n22::n1">
<data key="d0">1</data>
<data key="d4">valve_workup</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 16}"/>
</data>
</node>
<edge id="n22::e0" source="n22::n0" target="n22::n1" sourceport="p0" targetport="p0">
<data key="d11">-1</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 21}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FFD3D3D3" fill="{y:GraphMLReference 21}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<!-- </graph>
</node> -->
<!-- <node id="n23">
<data key="d0">51</data>
<data key="d7">
<y:GraphMLReference ResourceKey="19"/>
</data>
<graph id="n23:" edgedefault="directed"> -->
<node id="n23::n0">
<data key="d0">0</data>
<data key="d4">pump_column</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 17}"/>
</data>
</node>
<node id="n23::n1">
<data key="d0">1</data>
<data key="d4">valve_column</data>
<data key="d7">
<yjs:ImageNodeStyle image="{y:GraphMLReference 16}"/>
</data>
</node>
<edge id="n23::e0" source="n23::n0" target="n23::n1" sourceport="p0" targetport="p0">
<data key="d11">-1</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 23}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FFD3D3D3" fill="{y:GraphMLReference 23}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<!-- </graph>
</node> -->
<edge id="e0" source="n21::n1" target="n0" sourceport="p2" targetport="p0">
<data key="d11">7</data>
<data key="d12">
<x:List>
<y:Bend Location="625.6111111111111,304"/>
<y:Bend Location="85,304"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 24}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FF0E0E10" fill="{y:GraphMLReference 24}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e1" source="n21::n1" target="n1" sourceport="p3" targetport="p0">
<data key="d11">4</data>
<data key="d12">
<x:List>
<y:Bend Location="665.6111111111111,364"/>
<y:Bend Location="618.1111111111111,364"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 25}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FFA72920" fill="{y:GraphMLReference 25}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e2" source="n21::n1" target="n2" sourceport="p4" targetport="p0">
<data key="d11">2</data>
<data key="d12">
<x:List>
<y:Bend Location="655.6111111111111,349"/>
<y:Bend Location="480.4087301587302,349"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 26}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FFF6B600" fill="{y:GraphMLReference 26}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e3" source="n21::n1" target="n3" sourceport="p5" targetport="p0">
<data key="d11">3</data>
<data key="d12">
<x:List>
<y:Bend Location="645.6111111111111,334"/>
<y:Bend Location="345.36944444444447,334"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 27}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FF61993B" fill="{y:GraphMLReference 27}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e4" source="n21::n1" target="n22::n1" sourceport="p6" targetport="p1">
<data key="d11">1</data>
<data key="d12">
<x:List>
<y:Bend Location="705.6111111111111,319"/>
<y:Bend Location="1647.3194444444443,319"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 28}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FF7E4B26" fill="{y:GraphMLReference 28}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e5" source="n22::n1" target="n4" sourceport="p2" targetport="p0">
<data key="d11">2</data>
<data key="d12">
<x:List>
<y:Bend Location="1686.9027777777778,608.5"/>
<y:Bend Location="1755.7035714285714,608.5"/>
<y:Bend Location="1755.7035714285714,1137"/>
<y:Bend Location="1662.703373015873,1137"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 29}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FFF67828" fill="{y:GraphMLReference 29}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e6" source="n22::n1" target="n5" sourceport="p3" targetport="p0">
<data key="d11">7</data>
<data key="d12">
<x:List>
<y:Bend Location="1699.4027777777778,593.5"/>
<y:Bend Location="1835.7035714285714,593.5"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 30}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FF0E0E10" fill="{y:GraphMLReference 30}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e7" source="n22::n1" target="n6" sourceport="p4" targetport="p0">
<data key="d11">6</data>
<data key="d12">
<x:List>
<y:Bend Location="1724.4027777777778,563.5"/>
<y:Bend Location="2104.0650793650793,563.5"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 31}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FFF6B600" fill="{y:GraphMLReference 31}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e8" source="n22::n1" target="n21::n1" sourceport="p7" targetport="p7">
<data key="d11">8</data>
<data key="d12">
<x:List>
<y:Bend Location="1680.6527777777778,418"/>
<y:Bend Location="1674.986111111111,418"/>
<y:Bend Location="1674.986111111111,304"/>
<y:Bend Location="715.6111111111111,304"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 32}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FFA72920" fill="{y:GraphMLReference 32}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e9" source="n11" target="n12" sourceport="p1" targetport="p1">
<data key="d13">
<yjs:ArcEdgeStyle height="-0.5073650479316711" sourceArrow="{y:GraphMLReference 22}">
<yjs:ArcEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 33}" miterLimit="1.45"/>
</yjs:ArcEdgeStyle.stroke>
<yjs:ArcEdgeStyle.targetArrow>
<yjs:Arrow fill="{y:GraphMLReference 33}">
<yjs:Arrow.stroke>
<yjs:Stroke fill="{y:GraphMLReference 33}" miterLimit="1.45"/>
</yjs:Arrow.stroke>
</yjs:Arrow>
</yjs:ArcEdgeStyle.targetArrow>
</yjs:ArcEdgeStyle>
</data>
</edge>
<edge id="e10" source="n9" target="n8" sourceport="p1" targetport="p1">
<data key="d13">
<yjs:ArcEdgeStyle height="0.4530050754547119" sourceArrow="{y:GraphMLReference 22}">
<yjs:ArcEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 34}" miterLimit="1.45"/>
</yjs:ArcEdgeStyle.stroke>
<yjs:ArcEdgeStyle.targetArrow>
<yjs:Arrow fill="{y:GraphMLReference 34}">
<yjs:Arrow.stroke>
<yjs:Stroke fill="{y:GraphMLReference 34}" miterLimit="1.45"/>
</yjs:Arrow.stroke>
</yjs:Arrow>
</yjs:ArcEdgeStyle.targetArrow>
</yjs:ArcEdgeStyle>
</data>
</edge>
<edge id="e11" source="n23::n1" target="n13" sourceport="p2" targetport="p0">
<data key="d11">0</data>
<data key="d12">
<x:List>
<y:Bend Location="1234.5003968253968,849"/>
<y:Bend Location="1089.722619047619,849"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 35}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FF0E0E10" fill="{y:GraphMLReference 35}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e12" source="n23::n1" target="n14" sourceport="p3" targetport="p0">
<data key="d11">4</data>
<data key="d12">
<x:List>
<y:Bend Location="1223.3892857142857,834"/>
<y:Bend Location="959.722619047619,834"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 36}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FFF6B600" fill="{y:GraphMLReference 36}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e13" source="n23::n1" target="n15" sourceport="p4" targetport="p0">
<data key="d11">3</data>
<data key="d12">
<x:List>
<y:Bend Location="1212.2781746031746,819"/>
<y:Bend Location="876.222619047619,819"/>
<y:Bend Location="876.222619047619,1137"/>
<y:Bend Location="892.972619047619,1137"/>
</x:List>
</data>
<data key="d13">
<yjs:PolylineEdgeStyle sourceArrow="{y:GraphMLReference 22}">
<yjs:PolylineEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 37}" miterLimit="1.45"/>
</yjs:PolylineEdgeStyle.stroke>
<yjs:PolylineEdgeStyle.targetArrow>
<yjs:Arrow stroke="#FF61993B" fill="{y:GraphMLReference 37}"/>
</yjs:PolylineEdgeStyle.targetArrow>
</yjs:PolylineEdgeStyle>
</data>
</edge>
<edge id="e14" source="n14" target="n15" sourceport="p1" targetport="p1">
<data key="d13">
<yjs:ArcEdgeStyle height="-0.5073650479316711" sourceArrow="{y:GraphMLReference 22}">
<yjs:ArcEdgeStyle.stroke>
<yjs:Stroke fill="{y:GraphMLReference 38}" miterLimit="1.45"/>
</yjs:ArcEdgeStyle.stroke>
<yjs:ArcEdgeStyle.targetArrow>
<yjs:Arrow fill="{y:GraphMLReference 38}">
<yjs:Arrow.stroke>
<yjs:Stroke fill="{y:GraphMLReference 38}" miterLimit="1.45"/>
</yjs:Arrow.stroke>
</yjs:Arrow>
</yjs:ArcEdgeStyle.targetArrow>
</yjs:ArcEdgeStyle>
</data>
</edge>
<edge id="e15" source="n21::n1" target="n16" sourceport="p8" targetport="p0">
<data key="d11">6</data>
<data key="d12">
<x:List>
<y:Bend Location="635.6111111111111,319"/>
<y:Bend Location="215.36944444444444,319"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e16" source="n21::n1" target="n7" sourceport="p9" targetport="p1">
<data key="d11">5</data>
<data key="d12">
<x:List>
<y:Bend Location="675.6111111111111,364"/>
<y:Bend Location="723.1111111111111,364"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e17" source="n7" target="n21::n1" sourceport="p2" targetport="p10">
<data key="d12">
<x:List>
<y:Bend Location="773.1111111111111,349"/>
<y:Bend Location="685.6111111111111,349"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e18" source="n22::n1" target="n10" sourceport="p11" targetport="p1">
<data key="d11">5</data>
<data key="d12">
<x:List>
<y:Bend Location="1711.9027777777778,578.5"/>
<y:Bend Location="1965.7035714285714,578.5"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e19" source="n22::n1" target="n11" sourceport="p12" targetport="p2">
<data key="d11">4</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e20" source="n22::n1" target="n12" sourceport="p13" targetport="p2">
<data key="d11">3</data>
<data key="d12">
<x:List>
<y:Bend Location="1661.9027777777778,611.5"/>
<y:Bend Location="1586.2031746031746,611.5"/>
<y:Bend Location="1586.2031746031746,906"/>
<y:Bend Location="1639.404365079365,906"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e21" source="n23::n1" target="n9" sourceport="p11" targetport="p2">
<data key="d11">2</data>
<data key="d12">
<x:List>
<y:Bend Location="1267.83373015873,834"/>
<y:Bend Location="1389.7031746031746,834"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e22" source="n22::n1" target="n23::n1" sourceport="p14" targetport="p12">
<data key="d11">1</data>
<data key="d12">
<x:List>
<y:Bend Location="1636.9027777777778,581.5"/>
<y:Bend Location="1251.2781746031746,581.5"/>
<y:Bend Location="1251.2781746031746,665.5"/>
<y:Bend Location="1245.611507936508,665.5"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e23" source="n23::n1" target="n22::n1" sourceport="p13" targetport="p15">
<data key="d11">8</data>
<data key="d12">
<x:List>
<y:Bend Location="1278.9448412698412,596.5"/>
<y:Bend Location="1649.4027777777778,596.5"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e24" source="n21::n1" target="n17" sourceport="p11" targetport="p0">
<data key="d11">8</data>
<data key="d12">
<x:List>
<y:Bend Location="695.6111111111111,334"/>
<y:Bend Location="828.1111111111111,334"/>
<y:Bend Location="828.1111111111111,918"/>
<y:Bend Location="767.722619047619,918"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e25" source="n23::n1" target="n17" sourceport="p14" targetport="p1">
<data key="d11">5</data>
<data key="d12">
<x:List>
<y:Bend Location="1201.1670634920633,801"/>
<y:Bend Location="861.6111111111111,801"/>
<y:Bend Location="861.6111111111111,933"/>
<y:Bend Location="817.722619047619,933"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e26" source="n23::n1" target="n18" sourceport="p15" targetport="p2">
<data key="d11">7</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e27" source="n18" target="n19" sourceport="p3" targetport="p2">
<data key="d12">
<x:List>
<y:Bend Location="1256.722619047619,1137"/>
<y:Bend Location="1223.222619047619,1137"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e28" source="n23::n1" target="n19" sourceport="p16" targetport="p3">
<data key="d11">6</data>
<data key="d12">
<x:List>
<y:Bend Location="1245.611507936508,864"/>
<y:Bend Location="1173.222619047619,864"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e29" source="n23::n1" target="n20" sourceport="p17" targetport="p0">
<data key="d11">1</data>
<data key="d12">
<x:List>
<y:Bend Location="1278.9448412698412,819"/>
<y:Bend Location="1494.7031746031746,819"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e30" source="n20" target="n23::n1" sourceport="p1" targetport="p18">
<data key="d11">8</data>
<data key="d12">
<x:List>
<y:Bend Location="1544.7031746031746,801"/>
<y:Bend Location="1290.0559523809522,801"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
<edge id="e31" source="n20" target="n4" sourceport="p2" targetport="p2">
<data key="d11">2</data>
<data key="d12">
<x:List>
<y:Bend Location="1519.7031746031746,1149"/>
<y:Bend Location="1612.703373015873,1149"/>
</x:List>
</data>
<data key="d13">
<y:GraphMLReference ResourceKey="42"/>
</data>
</edge>
</graph>
</graphml>

View File

@@ -0,0 +1,966 @@
{
"nodes": [
{
"id": "YugongStation",
"name": "愚公常量合成工作站",
"children": [
"serial_pump",
"pump_reagents",
"flask_CH2Cl2",
"flask_acetone",
"flask_NH4Cl",
"flask_grignard",
"flask_THF",
"reactor",
"pump_workup",
"waste_workup",
"separator_controller",
"flask_separator",
"flask_holding",
"flask_H2O",
"flask_NaHCO3",
"pump_column",
"rotavap",
"flask_rv",
"column",
"flask_column",
"flask_air",
"dry_column",
"flask_dry_column",
"pump_ext",
"stirrer"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {
"protocol_type": ["PumpTransferProtocol", "CleanProtocol", "SeparateProtocol", "EvaporateProtocol"]
},
"data": {
}
},
{
"id": "serial_pump",
"name": "serial_pump",
"children": [],
"parent": "YugongStation",
"type": "device",
"class": "serial",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {
"port": "COM7",
"baudrate": 9600
},
"data": {
}
},
{
"id": "pump_reagents",
"name": "pump_reagents",
"children": [],
"parent": "YugongStation",
"type": "device",
"class": "syringepump.runze",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {
"port": "/devices/PumpBackbone/Serial/serialwrite",
"address": "1",
"max_volume": 25.0
},
"data": {
"max_velocity": 1.0,
"position": 0.0,
"status": "Idle",
"valve_position": "0"
}
},
{
"id": "flask_CH2Cl2",
"name": "flask_CH2Cl2",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 430.4087301587302,
"y": 428,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"liquid_type": "CH2Cl2",
"liquid_volume": 1500.0
}
]
}
},
{
"id": "flask_acetone",
"name": "flask_acetone",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 295.36944444444447,
"y": 428,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"liquid_type": "acetone",
"liquid_volume": 1500.0
}
]
}
},
{
"id": "flask_NH4Cl",
"name": "flask_NH4Cl",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 165.36944444444444,
"y": 428,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"liquid_type": "NH4Cl",
"liquid_volume": 1500.0
}
]
}
},
{
"id": "flask_grignard",
"name": "flask_grignard",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 165.36944444444444,
"y": 428,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"liquid_type": "grignard",
"liquid_volume": 1500.0
}
]
}
},
{
"id": "flask_THF",
"name": "flask_THF",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 35,
"y": 428,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"liquid_type": "THF",
"liquid_volume": 1500.0
}
]
}
},
{
"id": "reactor",
"name": "reactor",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 698.1111111111111,
"y": 428,
"z": 0
},
"config": {
"max_volume": 5000.0
},
"data": {
"liquid": [
]
}
},
{
"id": "stirrer",
"name": "stirrer",
"children": [],
"parent": "YugongStation",
"type": "device",
"class": "heaterstirrer.dalong",
"position": {
"x": 698.1111111111111,
"y": 478,
"z": 0
},
"config": {
"port": "COM43",
"temp_warning": 60.0
},
"data": {
"status": "Idle",
"temp": 0.0,
"stir_speed": 0.0
}
},
{
"id": "pump_workup",
"name": "pump_workup",
"children": [],
"parent": "YugongStation",
"type": "device",
"class": "syringepump.runze",
"position": {
"x": 1195.611507936508,
"y": 686,
"z": 0
},
"config": {
"port": "/devices/PumpBackbone/Serial/serialwrite",
"address": "2",
"max_volume": 25.0
},
"data": {
"max_velocity": 1.0,
"position": 0.0,
"status": "Idle",
"valve_position": "0"
}
},
{
"id": "waste_workup",
"name": "waste_workup",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 1587.703373015873,
"y": 1172.5,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
]
}
},
{
"id": "separator_controller",
"name": "separator_controller",
"children": [],
"parent": "YugongStation",
"type": "device",
"class": "separator_controller",
"position": {
"x": 1624.4027777777778,
"y": 665.5,
"z": 0
},
"config": {
"port_executor": "COM41",
"port_sensor": "COM40"
},
"data": {
"sensordata": 0.0,
"status": "Idle"
}
},
{
"id": "flask_separator",
"name": "flask_separator",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 1614.404365079365,
"y": 948,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
]
}
},
{
"id": "flask_holding",
"name": "flask_holding",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 1915.7035714285714,
"y": 665.5,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
]
}
},
{
"id": "flask_H2O",
"name": "flask_H2O",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 1785.7035714285714,
"y": 665.5,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"liquid_type": "H2O",
"liquid_volume": 1500.0
}
]
}
},
{
"id": "flask_NaHCO3",
"name": "flask_NaHCO3",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 2054.0650793650793,
"y": 665.5,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"liquid_type": "NaHCO3",
"liquid_volume": 1500.0
}
]
}
},
{
"id": "pump_column",
"name": "pump_column",
"children": [],
"parent": "YugongStation",
"type": "device",
"class": "syringepump.runze",
"position": {
"x": 1630.6527777777778,
"y": 448.5,
"z": 0
},
"config": {
"port": "/devices/PumpBackbone/Serial/serialwrite",
"address": "3",
"max_volume": 25.0
},
"data": {
"max_velocity": 1.0,
"position": 0.0,
"status": "Idle",
"valve_position": "0"
}
},
{
"id": "rotavap",
"name": "rotavap",
"children": [],
"parent": "YugongStation",
"type": "device",
"class": "rotavap",
"position": {
"x": 1339.7031746031746,
"y": 968.5,
"z": 0
},
"config": {
"port": "COM15"
},
"data": {
"temperature": 0.0,
"rotate_time": 0.0,
"status": "Idle"
}
},
{
"id": "flask_rv",
"name": "flask_rv",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 1339.7031746031746,
"y": 1152,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
]
}
},
{
"id": "column",
"name": "column",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 909.722619047619,
"y": 948,
"z": 0
},
"config": {
"max_volume": 200.0
},
"data": {
"liquid": [
]
}
},
{
"id": "flask_column",
"name": "flask_column",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 867.972619047619,
"y": 1152,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
]
}
},
{
"id": "flask_air",
"name": "flask_air",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 742.722619047619,
"y": 948,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
]
}
},
{
"id": "dry_column",
"name": "dry_column",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 1206.722619047619,
"y": 948,
"z": 0
},
"config": {
"max_volume": 200.0
},
"data": {
"liquid": [
]
}
},
{
"id": "flask_dry_column",
"name": "flask_dry_column",
"children": [],
"parent": "YugongStation",
"type": "container",
"class": null,
"position": {
"x": 1148.222619047619,
"y": 1152,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
]
}
},
{
"id": "pump_ext",
"name": "pump_ext",
"children": [],
"parent": "YugongStation",
"type": "device",
"class": "syringepump.runze",
"position": {
"x": 1469.7031746031746,
"y": 968.5,
"z": 0
},
"config": {
"port": "/devices/PumpBackbone/Serial/serialwrite",
"address": "4",
"max_volume": 25.0
},
"data": {
"max_velocity": 1.0,
"position": 0.0,
"status": "Idle",
"valve_position": "0"
}
},
{
"id": "AGV",
"name": "AGV",
"children": ["zhixing_agv", "zhixing_ur_arm"],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 698.1111111111111,
"y": 478,
"z": 0
},
"config": {
"protocol_type": ["AGVTransferProtocol"]
},
"data": {
}
},
{
"id": "zhixing_agv",
"name": "zhixing_agv",
"children": [],
"parent": "AGV",
"type": "device",
"class": "zhixing_agv",
"position": {
"x": 698.1111111111111,
"y": 478,
"z": 0
},
"config": {
"host": "192.168.1.42"
},
"data": {
}
},
{
"id": "zhixing_ur_arm",
"name": "zhixing_ur_arm",
"children": [],
"parent": "AGV",
"type": "device",
"class": "zhixing_ur_arm",
"position": {
"x": 698.1111111111111,
"y": 478,
"z": 0
},
"config": {
"host": "192.168.1.178"
},
"data": {
}
}
],
"links": [
{
"source": "pump_reagents",
"target": "serial_pump",
"type": "communication",
"port": {
"pump_reagents": "port",
"serial_pump": "port"
}
},
{
"source": "pump_workup",
"target": "serial_pump",
"type": "communication",
"port": {
"pump_reagents": "port",
"serial_pump": "port"
}
},
{
"source": "pump_column",
"target": "serial_pump",
"type": "communication",
"port": {
"pump_reagents": "port",
"serial_pump": "port"
}
},
{
"source": "pump_ext",
"target": "serial_pump",
"type": "communication",
"port": {
"pump_reagents": "port",
"serial_pump": "port"
}
},
{
"source": "reactor",
"target": "pump_reagents",
"type": "physical",
"port": {
"reactor": "top",
"pump_reagents": "5"
}
},
{
"source": "rotavap",
"target": "flask_rv",
"type": "physical",
"port": {
"rotavap": "bottom",
"flask_rv": "top"
}
},
{
"source": "separator_controller",
"target": "flask_separator",
"type": "physical",
"port": {
"separator_controller": "bottom",
"flask_separator": "top"
}
},
{
"source": "column",
"target": "flask_column",
"type": "physical",
"port": {
"column": "bottom",
"flask_column": "top"
}
},
{
"source": "dry_column",
"target": "flask_dry_column",
"type": "physical",
"port": {
"dry_column": "bottom",
"flask_dry_column": "top"
}
},
{
"source": "pump_ext",
"target": "pump_column",
"type": "physical",
"port": {
"pump_ext": "8",
"pump_column": "1"
}
},
{
"source": "pump_ext",
"target": "waste_workup",
"type": "physical",
"port": {
"pump_ext": "2",
"waste_workup": "-1"
}
},
{
"source": "pump_reagents",
"target": "flask_THF",
"type": "physical",
"port": {
"pump_reagents": "7",
"flask_THF": "top"
}
},
{
"source": "pump_reagents",
"target": "flask_NH4Cl",
"type": "physical",
"port": {
"pump_reagents": "4",
"flask_NH4Cl": "top"
}
},
{
"source": "pump_reagents",
"target": "flask_CH2Cl2",
"type": "physical",
"port": {
"pump_reagents": "2",
"flask_CH2Cl2": "top"
}
},
{
"source": "pump_reagents",
"target": "flask_acetone",
"type": "physical",
"port": {
"pump_reagents": "3",
"flask_acetone": "top"
}
},
{
"source": "pump_reagents",
"target": "pump_workup",
"type": "physical",
"port": {
"pump_reagents": "1",
"pump_workup": "8"
}
},
{
"source": "pump_reagents",
"target": "flask_grignard",
"type": "physical",
"port": {
"pump_reagents": "6",
"flask_grignard": "top"
}
},
{
"source": "pump_reagents",
"target": "reactor",
"type": "physical",
"port": {
"pump_reagents": "5",
"reactor": "top"
}
},
{
"source": "pump_reagents",
"target": "flask_air",
"type": "physical",
"port": {
"pump_reagents": "8",
"flask_air": "-1"
}
},
{
"source": "pump_workup",
"target": "waste_workup",
"type": "physical",
"port": {
"pump_workup": "2",
"waste_workup": "-1"
}
},
{
"source": "pump_workup",
"target": "flask_H2O",
"type": "physical",
"port": {
"pump_workup": "7",
"flask_H2O": "top"
}
},
{
"source": "pump_workup",
"target": "flask_NaHCO3",
"type": "physical",
"port": {
"pump_workup": "6",
"flask_NaHCO3": "top"
}
},
{
"source": "pump_workup",
"target": "pump_reagents",
"type": "physical",
"port": {
"pump_workup": "8",
"pump_reagents": "1"
}
},
{
"source": "pump_workup",
"target": "flask_holding",
"type": "physical",
"port": {
"pump_workup": "5",
"flask_holding": "top"
}
},
{
"source": "pump_workup",
"target": "separator_controller",
"type": "physical",
"port": {
"pump_workup": "4",
"separator_controller": "top"
}
},
{
"source": "pump_workup",
"target": "flask_separator",
"type": "physical",
"port": {
"pump_workup": "3",
"flask_separator": "top"
}
},
{
"source": "pump_workup",
"target": "pump_column",
"type": "physical",
"port": {
"pump_workup": "1",
"pump_column": "8"
}
},
{
"source": "pump_column",
"target": "column",
"type": "physical",
"port": {
"pump_column": "4",
"column": "top"
}
},
{
"source": "pump_column",
"target": "flask_column",
"type": "physical",
"port": {
"pump_column": "3",
"flask_column": "top"
}
},
{
"source": "pump_column",
"target": "rotavap",
"type": "physical",
"port": {
"pump_column": "2",
"rotavap": "-1"
}
},
{
"source": "pump_column",
"target": "pump_workup",
"type": "physical",
"port": {
"pump_column": "8",
"pump_workup": "1"
}
},
{
"source": "pump_column",
"target": "flask_air",
"type": "physical",
"port": {
"pump_column": "5",
"flask_air": "-1"
}
},
{
"source": "pump_column",
"target": "dry_column",
"type": "physical",
"port": {
"pump_column": "7",
"dry_column": "top"
}
},
{
"source": "pump_column",
"target": "flask_dry_column",
"type": "physical",
"port": {
"pump_column": "6",
"flask_dry_column": "top"
}
},
{
"source": "pump_column",
"target": "pump_ext",
"type": "physical",
"port": {
"pump_column": "1",
"pump_ext": "8"
}
}
]
}

174
test/experiments/HPLC.json Normal file
View File

@@ -0,0 +1,174 @@
{
"nodes": [
{
"id": "HPLC",
"name": "HPLC",
"parent": null,
"type": "device",
"class": "hplc",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {},
"data": {},
"children": [
"BottlesRack3"
]
},
{
"id": "BottlesRack3",
"name": "Revvity上样盘3",
"parent": "Revvity",
"type": "plate",
"class": null,
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {},
"data": {},
"children": [
"Bottle3-1",
"Bottle3-2",
"Bottle3-3",
"Bottle3-4",
"Bottle3-5",
"Bottle3-6",
"Bottle3-7",
"Bottle3-8"
]
},
{
"id": "Bottle3-1",
"name": "Bottle3-1",
"parent": "BottlesRack3",
"type": "container",
"class": null,
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {},
"data": {},
"children": [
]
},
{
"id": "Bottle3-2",
"name": "Bottle3-2",
"parent": "BottlesRack3",
"type": "container",
"class": null,
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {},
"data": {},
"children": [
]
},
{
"id": "Bottle3-3",
"name": "Bottle3-3",
"parent": "BottlesRack3",
"type": "container",
"class": null,
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {},
"data": {},
"children": [
]
},
{
"id": "Bottle3-4",
"name": "Bottle3-4",
"parent": "BottlesRack3",
"type": "container",
"class": null,
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {},
"data": {},
"children": [
]
},
{
"id": "Bottle3-5",
"name": "Bottle3-5",
"parent": "BottlesRack3",
"type": "container",
"class": null,
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {},
"data": {},
"children": [
]
},
{
"id": "Bottle3-6",
"name": "Bottle3-6",
"parent": "BottlesRack3",
"type": "container",
"class": null,
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {},
"data": {},
"children": [
]
},
{
"id": "Bottle3-7",
"name": "Bottle3-7",
"parent": "BottlesRack3",
"type": "container",
"class": null,
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {},
"data": {},
"children": [
]
},
{
"id": "Bottle3-8",
"name": "Bottle3-8",
"parent": "BottlesRack3",
"type": "container",
"class": null,
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {},
"data": {},
"children": [
]
}
],
"links": []
}

File diff suppressed because it is too large Load Diff

View File

@@ -0,0 +1,21 @@
controller_manager:
ros__parameters:
update_rate: 1.0 # 更新频率,单位 Hz. 20s 更新一次
# 控制器列表
controllers:
deis_current_controller:
type: EISModelBasedController # PID 控制器类型
inputs:
eis: # 环境输入(电化学阻抗谱)
topic: /devices/BioLogic/EISdata # 输入话题
type: list[float] # 输入数据类型
outputs:
current_control: # 控制输出(充电电流)
topic: /devices/BioLogic/current_control # 输出话题
type: float # 输出数据类型
parameters:
# set_point: 22.0 # 目标温度(可以动态更新)
# kp: 1.0 # PID 参数
# ki: 0.1
# kd: 0.05

View File

@@ -0,0 +1,54 @@
{
"PumpBackbone": {
"class": "protocol",
"protocol_type": ["PumpTransferProtocol", "CleanProtocol", "SeparateProtocol", "EvaporateProtocol"],
"children": {
"Serial": {
"class": "serial",
"port": "COM7",
"baudrate": 9600
},
"pump_reagents": {
"class": "syringepump.runze",
"port": "/devices/PumpBackbone/Serial/serialwrite",
"address": "1"
},
"pump_workup": {
"class": "syringepump.runze",
"port": "/devices/PumpBackbone/Serial/serialwrite",
"address": "2"
},
"pump_column": {
"class": "syringepump.runze",
"port": "/devices/PumpBackbone/Serial/serialwrite",
"address": "3"
},
"pump_ext": {
"class": "syringepump.runze",
"port": "/devices/PumpBackbone/Serial/serialwrite",
"address": "4"
},
"separator_controller": {
"class": "separator_controller",
"port_executor": "COM41",
"port_sensor": "COM40"
},
"rotavap_chiller": {
"class": "chiller",
"port": "COM17"
},
"rotavap_controller": {
"class": "rotavap",
"port": "COM15"
}
}
},
"AichemecoHiWo": {
"class": "work_station.aichemeco_hiwo"
},
"Stirrer": {
"class": "heaterstirrer.dalong",
"port": "COM43"
}
}

View File

@@ -0,0 +1 @@
{}

File diff suppressed because it is too large Load Diff

View File

@@ -0,0 +1,158 @@
{
"nodes": [
{
"id": "ReactorX",
"name": "模拟常量合成工作站",
"children": [
"reactor",
"vacuum_valve",
"gas_valve",
"vacuum_pump",
"gas_source"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {
"protocol_type": ["EvacuateAndRefillProtocol"]
},
"data": {
}
},
{
"id": "reactor",
"name": "reactor",
"children": [],
"parent": "ReactorX",
"type": "container",
"class": null,
"position": {
"x": 698.1111111111111,
"y": 428,
"z": 0
},
"config": {
"max_volume": 5000.0
},
"data": {
"liquid": [
]
}
},
{
"id": "vacuum_valve",
"name": "vacuum_valve",
"children": [
],
"parent": "ReactorX",
"type": "device",
"class": "solenoid_valve.mock",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {
},
"data": {
}
},
{
"id": "gas_valve",
"name": "gas_valve",
"children": [
],
"parent": "ReactorX",
"type": "device",
"class": "solenoid_valve.mock",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {
},
"data": {
}
},
{
"id": "vacuum_pump",
"name": "vacuum_pump",
"children": [
],
"parent": "ReactorX",
"type": "device",
"class": "vacuum_pump.mock",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {
},
"data": {
}
},
{
"id": "gas_source",
"name": "gas_source",
"children": [
],
"parent": "ReactorX",
"type": "device",
"class": "gas_source.mock",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {
},
"data": {
}
}
],
"links": [
{
"source": "reactor",
"target": "vacuum_valve",
"type": "physical",
"port": {
"reactor": "top",
"vacuum_valve": "1"
}
},
{
"source": "reactor",
"target": "gas_valve",
"type": "physical",
"port": {
"reactor": "top",
"gas_valve": "1"
}
},
{
"source": "vacuum_pump",
"target": "vacuum_valve",
"type": "physical",
"port": {
"vacuum_pump": "out",
"vacuum_valve": "0"
}
},
{
"source": "gas_source",
"target": "gas_valve",
"type": "physical",
"port": {
"gas_source": "out",
"gas_valve": "0"
}
}
]
}

10553
test/experiments/plr_test.json Normal file

File diff suppressed because it is too large Load Diff

View File

@@ -0,0 +1,43 @@
{
"nodes": [
{
"id": "Gripper1",
"name": "假夹爪",
"children": [
],
"parent": null,
"type": "device",
"class": "gripper.mock",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {
},
"data": {
}
},
{
"id": "Plate1",
"name": "Plate1",
"children": [
],
"parent": null,
"type": "plate",
"class": "nest_96_wellplate_2ml_deep",
"position": {
"x": 620.6111111111111,
"y": 171,
"z": 0
},
"config": {
},
"data": {
}
}
],
"links": [
]
}

View File

@@ -0,0 +1 @@
# 消息转换器测试包

View File

@@ -0,0 +1,71 @@
"""
基本测试
测试消息转换器的基本功能,包括导入、类型映射等。
"""
import unittest
from unilabos.ros.msgs.message_converter import (
msg_converter_manager,
get_msg_type,
get_action_type,
get_ros_type_by_msgname,
Point3D,
Point,
Float64,
String,
Bool,
Int32,
)
class TestBasicFunctionality(unittest.TestCase):
"""测试消息转换器的基本功能"""
def test_manager_initialization(self):
"""测试导入管理器初始化"""
self.assertIsNotNone(msg_converter_manager)
self.assertTrue(len(msg_converter_manager.list_modules()) > 0)
self.assertTrue(len(msg_converter_manager.list_classes()) > 0)
def test_get_msg_type(self):
"""测试获取消息类型"""
self.assertEqual(get_msg_type(float), Float64)
self.assertEqual(get_msg_type(str), String)
self.assertEqual(get_msg_type(bool), Bool)
self.assertEqual(get_msg_type(int), Int32)
self.assertEqual(get_msg_type(Point3D), Point)
# 测试错误情况
with self.assertRaises(ValueError):
get_msg_type(set) # 不支持的类型
def test_get_action_type(self):
"""测试获取动作类型"""
float_action = get_action_type(float)
self.assertIsNotNone(float_action)
self.assertTrue("type" in float_action)
self.assertTrue("goal" in float_action)
self.assertTrue("feedback" in float_action)
# 测试错误情况
with self.assertRaises(ValueError):
get_action_type(set) # 不支持的类型
def test_get_ros_type_by_msgname(self):
"""测试通过消息名称获取ROS类型"""
# 测试有效的消息名称
point_type = get_ros_type_by_msgname("geometry_msgs/msg/Point")
self.assertEqual(point_type, Point)
# 测试无效的消息名称
with self.assertRaises(ValueError):
get_ros_type_by_msgname("invalid_format")
# 不存在的消息类型可能会引发ImportError但这依赖于运行环境
# 因此不进行显式测试
if __name__ == "__main__":
unittest.main()

View File

@@ -0,0 +1,131 @@
"""
转换测试
测试Python对象和ROS消息之间的转换功能。
"""
import unittest
from dataclasses import dataclass
from unilabos.ros.msgs.message_converter import (
convert_to_ros_msg,
convert_from_ros_msg,
convert_to_ros_msg_with_mapping,
convert_from_ros_msg_with_mapping,
Point,
Float64,
String,
Point3D,
Resource,
)
# 定义一些测试数据类
@dataclass
class TestPoint:
x: float = 0.0
y: float = 0.0
z: float = 0.0
class TestBasicConversion(unittest.TestCase):
"""测试基本类型转换"""
def test_primitive_conversion(self):
"""测试原始类型转换"""
# Float转换
float_value = 3.14
ros_float = convert_to_ros_msg(Float64, float_value)
self.assertEqual(ros_float.data, float_value)
# 反向转换
py_float = convert_from_ros_msg(ros_float)
self.assertEqual(py_float, float_value)
# 字符串转换
str_value = "hello"
ros_str = convert_to_ros_msg(String, str_value)
self.assertEqual(ros_str.data, str_value)
# 反向转换
py_str = convert_from_ros_msg(ros_str)
self.assertEqual(py_str, str_value)
def test_point_conversion(self):
"""测试点类型转换"""
# 创建Point3D对象
py_point = Point3D(x=1.0, y=2.0, z=3.0)
# 转换为ROS Point
ros_point = convert_to_ros_msg(Point, py_point)
self.assertEqual(ros_point.x, py_point.x)
self.assertEqual(ros_point.y, py_point.y)
self.assertEqual(ros_point.z, py_point.z)
# 反向转换
py_point_back = convert_from_ros_msg(ros_point)
self.assertEqual(py_point_back.x, py_point.x)
self.assertEqual(py_point_back.y, py_point.y)
self.assertEqual(py_point_back.z, py_point.z)
def test_dataclass_conversion(self):
"""测试dataclass转换"""
# 创建dataclass
test_point = TestPoint(x=1.0, y=2.0, z=3.0)
# 转换
ros_point = convert_to_ros_msg(Point, test_point)
self.assertEqual(ros_point.x, test_point.x)
self.assertEqual(ros_point.y, test_point.y)
self.assertEqual(ros_point.z, test_point.z)
class TestMappingConversion(unittest.TestCase):
"""测试映射转换功能"""
def test_mapping_conversion(self):
"""测试带映射的转换"""
# 创建测试数据
test_data = {
"position": {"x": 1.0, "y": 2.0, "z": 3.0},
"name": "test_resource",
"id": "123",
"type": "test_type",
}
# 定义映射
mapping = {
"id": "id",
"name": "name",
"type": "type",
"pose.position": "position",
}
# 转换为ROS资源
ros_resource = convert_to_ros_msg_with_mapping(Resource, test_data, mapping)
self.assertEqual(ros_resource.id, "123")
self.assertEqual(ros_resource.name, "test_resource")
self.assertEqual(ros_resource.type, "test_type")
self.assertEqual(ros_resource.pose.position.x, 1.0)
self.assertEqual(ros_resource.pose.position.y, 2.0)
self.assertEqual(ros_resource.pose.position.z, 3.0)
# 反向转换
reverse_mapping = {
"id": "id",
"name": "name",
"type": "type",
"pose.position": "position",
}
py_data = convert_from_ros_msg_with_mapping(ros_resource, reverse_mapping)
self.assertEqual(py_data["id"], "123")
self.assertEqual(py_data["name"], "test_resource")
self.assertEqual(py_data["type"], "test_type")
self.assertEqual(py_data["position"].x, 1.0)
self.assertEqual(py_data["position"].y, 2.0)
self.assertEqual(py_data["position"].z, 3.0)
if __name__ == "__main__":
unittest.main()

View File

@@ -0,0 +1,120 @@
"""
映射测试
测试消息类型映射和字段映射功能。
"""
import unittest
from dataclasses import dataclass
from unilabos.ros.msgs.message_converter import (
_msg_mapping,
_action_mapping,
_msg_converter,
_msg_converter_back,
compare_model_fields,
Point,
Point3D,
Float64,
String,
set_msg_data,
)
@dataclass
class TestMappingModel:
"""用于测试映射的数据类"""
id: str
name: str
value: float
@dataclass
class TestPointModel:
"""用于测试字段比较的点模型"""
x: float
y: float
z: float
class TestTypeMapping(unittest.TestCase):
"""测试类型映射"""
def test_msg_mapping(self):
"""测试消息类型映射"""
self.assertIn(float, _msg_mapping)
self.assertEqual(_msg_mapping[float], Float64)
self.assertIn(str, _msg_mapping)
self.assertEqual(_msg_mapping[str], String)
self.assertIn(Point3D, _msg_mapping)
self.assertEqual(_msg_mapping[Point3D], Point)
def test_action_mapping(self):
"""测试动作类型映射"""
self.assertIn(float, _action_mapping)
self.assertIn("type", _action_mapping[float])
self.assertIn("goal", _action_mapping[float])
self.assertIn("feedback", _action_mapping[float])
self.assertIn("result", _action_mapping[float])
def test_converter_mapping(self):
"""测试转换器映射"""
# 测试Python到ROS映射
self.assertIn(float, _msg_converter)
self.assertIn(Float64, _msg_converter)
self.assertIn(String, _msg_converter)
self.assertIn(Point, _msg_converter)
# 测试ROS到Python映射
self.assertIn(float, _msg_converter_back)
self.assertIn(Float64, _msg_converter_back)
self.assertIn(String, _msg_converter_back)
self.assertIn(Point, _msg_converter_back)
class TestFieldMapping(unittest.TestCase):
"""测试字段映射"""
def test_compare_model_fields(self):
"""测试模型字段比较"""
# Point3D和TestPointModel有相同的字段
self.assertTrue(compare_model_fields(Point3D, TestPointModel))
# 与其他类型比较
self.assertFalse(compare_model_fields(Point3D, TestMappingModel))
self.assertFalse(compare_model_fields(Point3D, float))
# 类型对象和实例对象比较
point = Point3D(x=1.0, y=2.0, z=3.0)
self.assertTrue(compare_model_fields(Point3D, type(point)))
def test_set_msg_data(self):
"""测试设置消息数据类型"""
# 测试float转换
float_value = "3.14"
self.assertEqual(set_msg_data("float", float_value), 3.14)
self.assertEqual(set_msg_data("double", float_value), 3.14)
# 测试int转换
int_value = "42"
self.assertEqual(set_msg_data("int", int_value), 42)
# 测试bool转换
bool_value = "True"
self.assertEqual(set_msg_data("bool", bool_value), True)
# 测试str转换
str_value = "hello"
self.assertEqual(set_msg_data("str", str_value), "hello")
# 测试默认转换
default_value = 123
self.assertEqual(set_msg_data("unknown_type", default_value), "123")
if __name__ == "__main__":
unittest.main()

View File

@@ -0,0 +1,47 @@
"""
测试运行器
运行所有消息转换器的测试用例。
"""
import unittest
import sys
import os
# 添加项目根目录到路径
sys.path.append(os.path.dirname(os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))))
# 导入测试模块
from test.ros.msgs.test_basic import TestBasicFunctionality
from test.ros.msgs.test_conversion import TestBasicConversion, TestMappingConversion
from test.ros.msgs.test_mapping import TestTypeMapping, TestFieldMapping
def run_tests():
"""运行所有测试"""
# 创建测试加载器
loader = unittest.TestLoader()
# 创建测试套件
suite = unittest.TestSuite()
# 添加测试类
suite.addTests(loader.loadTestsFromTestCase(TestBasicFunctionality))
suite.addTests(loader.loadTestsFromTestCase(TestBasicConversion))
suite.addTests(loader.loadTestsFromTestCase(TestMappingConversion))
suite.addTests(loader.loadTestsFromTestCase(TestTypeMapping))
suite.addTests(loader.loadTestsFromTestCase(TestFieldMapping))
# 创建测试运行器
runner = unittest.TextTestRunner(verbosity=2)
# 运行测试
result = runner.run(suite)
# 返回结果
return result.wasSuccessful()
if __name__ == "__main__":
success = run_tests()
sys.exit(not success)