mirror of
https://github.com/dptech-corp/Uni-Lab-OS.git
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Merge remote-tracking branch 'origin/dev' into workstation_dev_YB3
This commit is contained in:
695
scripts/workflow.py
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695
scripts/workflow.py
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@@ -0,0 +1,695 @@
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import json
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import logging
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import traceback
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import uuid
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import xml.etree.ElementTree as ET
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from typing import Any, Dict, List
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import networkx as nx
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import matplotlib.pyplot as plt
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import requests
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logger = logging.getLogger(__name__)
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class SimpleGraph:
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"""简单的有向图实现,用于构建工作流图"""
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def __init__(self):
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self.nodes = {}
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self.edges = []
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def add_node(self, node_id, **attrs):
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"""添加节点"""
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self.nodes[node_id] = attrs
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def add_edge(self, source, target, **attrs):
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"""添加边"""
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edge = {"source": source, "target": target, **attrs}
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self.edges.append(edge)
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def to_dict(self):
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"""转换为工作流图格式"""
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nodes_list = []
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for node_id, attrs in self.nodes.items():
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node_attrs = attrs.copy()
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params = node_attrs.pop("parameters", {}) or {}
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node_attrs.update(params)
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nodes_list.append({"id": node_id, **node_attrs})
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return {
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"directed": True,
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"multigraph": False,
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"graph": {},
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"nodes": nodes_list,
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"links": self.edges,
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}
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def extract_json_from_markdown(text: str) -> str:
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"""从markdown代码块中提取JSON"""
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text = text.strip()
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if text.startswith("```json\n"):
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text = text[8:]
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if text.startswith("```\n"):
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text = text[4:]
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if text.endswith("\n```"):
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text = text[:-4]
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return text
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def convert_to_type(val: str) -> Any:
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"""将字符串值转换为适当的数据类型"""
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if val == "True":
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return True
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if val == "False":
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return False
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if val == "?":
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return None
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if val.endswith(" g"):
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return float(val.split(" ")[0])
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if val.endswith("mg"):
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return float(val.split("mg")[0])
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elif val.endswith("mmol"):
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return float(val.split("mmol")[0]) / 1000
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elif val.endswith("mol"):
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return float(val.split("mol")[0])
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elif val.endswith("ml"):
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return float(val.split("ml")[0])
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elif val.endswith("RPM"):
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return float(val.split("RPM")[0])
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elif val.endswith(" °C"):
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return float(val.split(" ")[0])
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elif val.endswith(" %"):
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return float(val.split(" ")[0])
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return val
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def refactor_data(data: List[Dict[str, Any]]) -> List[Dict[str, Any]]:
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"""统一的数据重构函数,根据操作类型自动选择模板"""
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refactored_data = []
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# 定义操作映射,包含生物实验和有机化学的所有操作
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OPERATION_MAPPING = {
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# 生物实验操作
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"transfer_liquid": "SynBioFactory-liquid_handler.prcxi-transfer_liquid",
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"transfer": "SynBioFactory-liquid_handler.biomek-transfer",
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"incubation": "SynBioFactory-liquid_handler.biomek-incubation",
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"move_labware": "SynBioFactory-liquid_handler.biomek-move_labware",
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"oscillation": "SynBioFactory-liquid_handler.biomek-oscillation",
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# 有机化学操作
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"HeatChillToTemp": "SynBioFactory-workstation-HeatChillProtocol",
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"StopHeatChill": "SynBioFactory-workstation-HeatChillStopProtocol",
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"StartHeatChill": "SynBioFactory-workstation-HeatChillStartProtocol",
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"HeatChill": "SynBioFactory-workstation-HeatChillProtocol",
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"Dissolve": "SynBioFactory-workstation-DissolveProtocol",
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"Transfer": "SynBioFactory-workstation-TransferProtocol",
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"Evaporate": "SynBioFactory-workstation-EvaporateProtocol",
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"Recrystallize": "SynBioFactory-workstation-RecrystallizeProtocol",
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"Filter": "SynBioFactory-workstation-FilterProtocol",
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"Dry": "SynBioFactory-workstation-DryProtocol",
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"Add": "SynBioFactory-workstation-AddProtocol",
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}
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UNSUPPORTED_OPERATIONS = ["Purge", "Wait", "Stir", "ResetHandling"]
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for step in data:
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operation = step.get("action")
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if not operation or operation in UNSUPPORTED_OPERATIONS:
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continue
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# 处理重复操作
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if operation == "Repeat":
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times = step.get("times", step.get("parameters", {}).get("times", 1))
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sub_steps = step.get("steps", step.get("parameters", {}).get("steps", []))
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for i in range(int(times)):
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sub_data = refactor_data(sub_steps)
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refactored_data.extend(sub_data)
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continue
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# 获取模板名称
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template = OPERATION_MAPPING.get(operation)
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if not template:
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# 自动推断模板类型
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if operation.lower() in ["transfer", "incubation", "move_labware", "oscillation"]:
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template = f"SynBioFactory-liquid_handler.biomek-{operation}"
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else:
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template = f"SynBioFactory-workstation-{operation}Protocol"
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# 创建步骤数据
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step_data = {
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"template": template,
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"description": step.get("description", step.get("purpose", f"{operation} operation")),
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"lab_node_type": "Device",
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"parameters": step.get("parameters", step.get("action_args", {})),
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}
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refactored_data.append(step_data)
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return refactored_data
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def build_protocol_graph(
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labware_info: List[Dict[str, Any]], protocol_steps: List[Dict[str, Any]], workstation_name: str
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) -> SimpleGraph:
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"""统一的协议图构建函数,根据设备类型自动选择构建逻辑"""
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G = SimpleGraph()
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resource_last_writer = {}
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LAB_NAME = "SynBioFactory"
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protocol_steps = refactor_data(protocol_steps)
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# 检查协议步骤中的模板来判断协议类型
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has_biomek_template = any(
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("biomek" in step.get("template", "")) or ("prcxi" in step.get("template", ""))
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for step in protocol_steps
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)
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if has_biomek_template:
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# 生物实验协议图构建
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for labware_id, labware in labware_info.items():
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node_id = str(uuid.uuid4())
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labware_attrs = labware.copy()
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labware_id = labware_attrs.pop("id", labware_attrs.get("name", f"labware_{uuid.uuid4()}"))
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labware_attrs["description"] = labware_id
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labware_attrs["lab_node_type"] = (
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"Reagent" if "Plate" in str(labware_id) else "Labware" if "Rack" in str(labware_id) else "Sample"
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)
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labware_attrs["device_id"] = workstation_name
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G.add_node(node_id, template=f"{LAB_NAME}-host_node-create_resource", **labware_attrs)
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resource_last_writer[labware_id] = f"{node_id}:labware"
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# 处理协议步骤
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prev_node = None
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for i, step in enumerate(protocol_steps):
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node_id = str(uuid.uuid4())
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G.add_node(node_id, **step)
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# 添加控制流边
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if prev_node is not None:
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G.add_edge(prev_node, node_id, source_port="ready", target_port="ready")
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prev_node = node_id
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# 处理物料流
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params = step.get("parameters", {})
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if "sources" in params and params["sources"] in resource_last_writer:
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source_node, source_port = resource_last_writer[params["sources"]].split(":")
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G.add_edge(source_node, node_id, source_port=source_port, target_port="labware")
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if "targets" in params:
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resource_last_writer[params["targets"]] = f"{node_id}:labware"
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# 添加协议结束节点
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end_id = str(uuid.uuid4())
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G.add_node(end_id, template=f"{LAB_NAME}-liquid_handler.biomek-run_protocol")
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if prev_node is not None:
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G.add_edge(prev_node, end_id, source_port="ready", target_port="ready")
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else:
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# 有机化学协议图构建
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WORKSTATION_ID = workstation_name
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# 为所有labware创建资源节点
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for item_id, item in labware_info.items():
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# item_id = item.get("id") or item.get("name", f"item_{uuid.uuid4()}")
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node_id = str(uuid.uuid4())
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# 判断节点类型
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if item.get("type") == "hardware" or "reactor" in str(item_id).lower():
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if "reactor" not in str(item_id).lower():
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continue
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lab_node_type = "Sample"
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description = f"Prepare Reactor: {item_id}"
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liquid_type = []
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liquid_volume = []
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else:
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lab_node_type = "Reagent"
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description = f"Add Reagent to Flask: {item_id}"
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liquid_type = [item_id]
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liquid_volume = [1e5]
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G.add_node(
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node_id,
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template=f"{LAB_NAME}-host_node-create_resource",
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description=description,
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lab_node_type=lab_node_type,
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res_id=item_id,
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device_id=WORKSTATION_ID,
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class_name="container",
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parent=WORKSTATION_ID,
|
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bind_locations={"x": 0.0, "y": 0.0, "z": 0.0},
|
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liquid_input_slot=[-1],
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liquid_type=liquid_type,
|
||||||
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liquid_volume=liquid_volume,
|
||||||
|
slot_on_deck="",
|
||||||
|
role=item.get("role", ""),
|
||||||
|
)
|
||||||
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resource_last_writer[item_id] = f"{node_id}:labware"
|
||||||
|
|
||||||
|
last_control_node_id = None
|
||||||
|
|
||||||
|
# 处理协议步骤
|
||||||
|
for step in protocol_steps:
|
||||||
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node_id = str(uuid.uuid4())
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G.add_node(node_id, **step)
|
||||||
|
|
||||||
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# 控制流
|
||||||
|
if last_control_node_id is not None:
|
||||||
|
G.add_edge(last_control_node_id, node_id, source_port="ready", target_port="ready")
|
||||||
|
last_control_node_id = node_id
|
||||||
|
|
||||||
|
# 物料流
|
||||||
|
params = step.get("parameters", {})
|
||||||
|
input_resources = {
|
||||||
|
"Vessel": params.get("vessel"),
|
||||||
|
"ToVessel": params.get("to_vessel"),
|
||||||
|
"FromVessel": params.get("from_vessel"),
|
||||||
|
"reagent": params.get("reagent"),
|
||||||
|
"solvent": params.get("solvent"),
|
||||||
|
"compound": params.get("compound"),
|
||||||
|
"sources": params.get("sources"),
|
||||||
|
"targets": params.get("targets"),
|
||||||
|
}
|
||||||
|
|
||||||
|
for target_port, resource_name in input_resources.items():
|
||||||
|
if resource_name and resource_name in resource_last_writer:
|
||||||
|
source_node, source_port = resource_last_writer[resource_name].split(":")
|
||||||
|
G.add_edge(source_node, node_id, source_port=source_port, target_port=target_port)
|
||||||
|
|
||||||
|
output_resources = {
|
||||||
|
"VesselOut": params.get("vessel"),
|
||||||
|
"FromVesselOut": params.get("from_vessel"),
|
||||||
|
"ToVesselOut": params.get("to_vessel"),
|
||||||
|
"FiltrateOut": params.get("filtrate_vessel"),
|
||||||
|
"reagent": params.get("reagent"),
|
||||||
|
"solvent": params.get("solvent"),
|
||||||
|
"compound": params.get("compound"),
|
||||||
|
"sources_out": params.get("sources"),
|
||||||
|
"targets_out": params.get("targets"),
|
||||||
|
}
|
||||||
|
|
||||||
|
for source_port, resource_name in output_resources.items():
|
||||||
|
if resource_name:
|
||||||
|
resource_last_writer[resource_name] = f"{node_id}:{source_port}"
|
||||||
|
|
||||||
|
return G
|
||||||
|
|
||||||
|
|
||||||
|
def draw_protocol_graph(protocol_graph: SimpleGraph, output_path: str):
|
||||||
|
"""
|
||||||
|
(辅助功能) 使用 networkx 和 matplotlib 绘制协议工作流图,用于可视化。
|
||||||
|
"""
|
||||||
|
if not protocol_graph:
|
||||||
|
print("Cannot draw graph: Graph object is empty.")
|
||||||
|
return
|
||||||
|
|
||||||
|
G = nx.DiGraph()
|
||||||
|
|
||||||
|
for node_id, attrs in protocol_graph.nodes.items():
|
||||||
|
label = attrs.get("description", attrs.get("template", node_id[:8]))
|
||||||
|
G.add_node(node_id, label=label, **attrs)
|
||||||
|
|
||||||
|
for edge in protocol_graph.edges:
|
||||||
|
G.add_edge(edge["source"], edge["target"])
|
||||||
|
|
||||||
|
plt.figure(figsize=(20, 15))
|
||||||
|
try:
|
||||||
|
pos = nx.nx_agraph.graphviz_layout(G, prog="dot")
|
||||||
|
except Exception:
|
||||||
|
pos = nx.shell_layout(G) # Fallback layout
|
||||||
|
|
||||||
|
node_labels = {node: data["label"] for node, data in G.nodes(data=True)}
|
||||||
|
nx.draw(
|
||||||
|
G,
|
||||||
|
pos,
|
||||||
|
with_labels=False,
|
||||||
|
node_size=2500,
|
||||||
|
node_color="skyblue",
|
||||||
|
node_shape="o",
|
||||||
|
edge_color="gray",
|
||||||
|
width=1.5,
|
||||||
|
arrowsize=15,
|
||||||
|
)
|
||||||
|
nx.draw_networkx_labels(G, pos, labels=node_labels, font_size=8, font_weight="bold")
|
||||||
|
|
||||||
|
plt.title("Chemical Protocol Workflow Graph", size=15)
|
||||||
|
plt.savefig(output_path, dpi=300, bbox_inches="tight")
|
||||||
|
plt.close()
|
||||||
|
print(f" - Visualization saved to '{output_path}'")
|
||||||
|
|
||||||
|
|
||||||
|
from networkx.drawing.nx_agraph import to_agraph
|
||||||
|
import re
|
||||||
|
|
||||||
|
COMPASS = {"n","e","s","w","ne","nw","se","sw","c"}
|
||||||
|
|
||||||
|
def _is_compass(port: str) -> bool:
|
||||||
|
return isinstance(port, str) and port.lower() in COMPASS
|
||||||
|
|
||||||
|
def draw_protocol_graph_with_ports(protocol_graph, output_path: str, rankdir: str = "LR"):
|
||||||
|
"""
|
||||||
|
使用 Graphviz 端口语法绘制协议工作流图。
|
||||||
|
- 若边上的 source_port/target_port 是 compass(n/e/s/w/...),直接用 compass。
|
||||||
|
- 否则自动为节点创建 record 形状并定义命名端口 <portname>。
|
||||||
|
最终由 PyGraphviz 渲染并输出到 output_path(后缀决定格式,如 .png/.svg/.pdf)。
|
||||||
|
"""
|
||||||
|
if not protocol_graph:
|
||||||
|
print("Cannot draw graph: Graph object is empty.")
|
||||||
|
return
|
||||||
|
|
||||||
|
# 1) 先用 networkx 搭建有向图,保留端口属性
|
||||||
|
G = nx.DiGraph()
|
||||||
|
for node_id, attrs in protocol_graph.nodes.items():
|
||||||
|
label = attrs.get("description", attrs.get("template", node_id[:8]))
|
||||||
|
# 保留一个干净的“中心标签”,用于放在 record 的中间槽
|
||||||
|
G.add_node(node_id, _core_label=str(label), **{k:v for k,v in attrs.items() if k not in ("label",)})
|
||||||
|
|
||||||
|
edges_data = []
|
||||||
|
in_ports_by_node = {} # 收集命名输入端口
|
||||||
|
out_ports_by_node = {} # 收集命名输出端口
|
||||||
|
|
||||||
|
for edge in protocol_graph.edges:
|
||||||
|
u = edge["source"]
|
||||||
|
v = edge["target"]
|
||||||
|
sp = edge.get("source_port")
|
||||||
|
tp = edge.get("target_port")
|
||||||
|
|
||||||
|
# 记录到图里(保留原始端口信息)
|
||||||
|
G.add_edge(u, v, source_port=sp, target_port=tp)
|
||||||
|
edges_data.append((u, v, sp, tp))
|
||||||
|
|
||||||
|
# 如果不是 compass,就按“命名端口”先归类,等会儿给节点造 record
|
||||||
|
if sp and not _is_compass(sp):
|
||||||
|
out_ports_by_node.setdefault(u, set()).add(str(sp))
|
||||||
|
if tp and not _is_compass(tp):
|
||||||
|
in_ports_by_node.setdefault(v, set()).add(str(tp))
|
||||||
|
|
||||||
|
# 2) 转为 AGraph,使用 Graphviz 渲染
|
||||||
|
A = to_agraph(G)
|
||||||
|
A.graph_attr.update(rankdir=rankdir, splines="true", concentrate="false", fontsize="10")
|
||||||
|
A.node_attr.update(shape="box", style="rounded,filled", fillcolor="lightyellow", color="#999999", fontname="Helvetica")
|
||||||
|
A.edge_attr.update(arrowsize="0.8", color="#666666")
|
||||||
|
|
||||||
|
# 3) 为需要命名端口的节点设置 record 形状与 label
|
||||||
|
# 左列 = 输入端口;中间 = 核心标签;右列 = 输出端口
|
||||||
|
for n in A.nodes():
|
||||||
|
node = A.get_node(n)
|
||||||
|
core = G.nodes[n].get("_core_label", n)
|
||||||
|
|
||||||
|
in_ports = sorted(in_ports_by_node.get(n, []))
|
||||||
|
out_ports = sorted(out_ports_by_node.get(n, []))
|
||||||
|
|
||||||
|
# 如果该节点涉及命名端口,则用 record;否则保留原 box
|
||||||
|
if in_ports or out_ports:
|
||||||
|
def port_fields(ports):
|
||||||
|
if not ports:
|
||||||
|
return " " # 必须留一个空槽占位
|
||||||
|
# 每个端口一个小格子,<p> name
|
||||||
|
return "|".join(f"<{re.sub(r'[^A-Za-z0-9_:.|-]', '_', p)}> {p}" for p in ports)
|
||||||
|
|
||||||
|
left = port_fields(in_ports)
|
||||||
|
right = port_fields(out_ports)
|
||||||
|
|
||||||
|
# 三栏:左(入) | 中(节点名) | 右(出)
|
||||||
|
record_label = f"{{ {left} | {core} | {right} }}"
|
||||||
|
node.attr.update(shape="record", label=record_label)
|
||||||
|
else:
|
||||||
|
# 没有命名端口:普通盒子,显示核心标签
|
||||||
|
node.attr.update(label=str(core))
|
||||||
|
|
||||||
|
# 4) 给边设置 headport / tailport
|
||||||
|
# - 若端口为 compass:直接用 compass(e.g., headport="e")
|
||||||
|
# - 若端口为命名端口:使用在 record 中定义的 <port> 名(同名即可)
|
||||||
|
for (u, v, sp, tp) in edges_data:
|
||||||
|
e = A.get_edge(u, v)
|
||||||
|
|
||||||
|
# Graphviz 属性:tail 是源,head 是目标
|
||||||
|
if sp:
|
||||||
|
if _is_compass(sp):
|
||||||
|
e.attr["tailport"] = sp.lower()
|
||||||
|
else:
|
||||||
|
# 与 record label 中 <port> 名一致;特殊字符已在 label 中做了清洗
|
||||||
|
e.attr["tailport"] = re.sub(r'[^A-Za-z0-9_:.|-]', '_', str(sp))
|
||||||
|
|
||||||
|
if tp:
|
||||||
|
if _is_compass(tp):
|
||||||
|
e.attr["headport"] = tp.lower()
|
||||||
|
else:
|
||||||
|
e.attr["headport"] = re.sub(r'[^A-Za-z0-9_:.|-]', '_', str(tp))
|
||||||
|
|
||||||
|
# 可选:若想让边更贴边缘,可设置 constraint/spline 等
|
||||||
|
# e.attr["arrowhead"] = "vee"
|
||||||
|
|
||||||
|
# 5) 输出
|
||||||
|
A.draw(output_path, prog="dot")
|
||||||
|
print(f" - Port-aware workflow rendered to '{output_path}'")
|
||||||
|
|
||||||
|
|
||||||
|
def flatten_xdl_procedure(procedure_elem: ET.Element) -> List[ET.Element]:
|
||||||
|
"""展平嵌套的XDL程序结构"""
|
||||||
|
flattened_operations = []
|
||||||
|
TEMP_UNSUPPORTED_PROTOCOL = ["Purge", "Wait", "Stir", "ResetHandling"]
|
||||||
|
|
||||||
|
def extract_operations(element: ET.Element):
|
||||||
|
if element.tag not in ["Prep", "Reaction", "Workup", "Purification", "Procedure"]:
|
||||||
|
if element.tag not in TEMP_UNSUPPORTED_PROTOCOL:
|
||||||
|
flattened_operations.append(element)
|
||||||
|
|
||||||
|
for child in element:
|
||||||
|
extract_operations(child)
|
||||||
|
|
||||||
|
for child in procedure_elem:
|
||||||
|
extract_operations(child)
|
||||||
|
|
||||||
|
return flattened_operations
|
||||||
|
|
||||||
|
|
||||||
|
def parse_xdl_content(xdl_content: str) -> tuple:
|
||||||
|
"""解析XDL内容"""
|
||||||
|
try:
|
||||||
|
xdl_content_cleaned = "".join(c for c in xdl_content if c.isprintable())
|
||||||
|
root = ET.fromstring(xdl_content_cleaned)
|
||||||
|
|
||||||
|
synthesis_elem = root.find("Synthesis")
|
||||||
|
if synthesis_elem is None:
|
||||||
|
return None, None, None
|
||||||
|
|
||||||
|
# 解析硬件组件
|
||||||
|
hardware_elem = synthesis_elem.find("Hardware")
|
||||||
|
hardware = []
|
||||||
|
if hardware_elem is not None:
|
||||||
|
hardware = [{"id": c.get("id"), "type": c.get("type")} for c in hardware_elem.findall("Component")]
|
||||||
|
|
||||||
|
# 解析试剂
|
||||||
|
reagents_elem = synthesis_elem.find("Reagents")
|
||||||
|
reagents = []
|
||||||
|
if reagents_elem is not None:
|
||||||
|
reagents = [{"name": r.get("name"), "role": r.get("role", "")} for r in reagents_elem.findall("Reagent")]
|
||||||
|
|
||||||
|
# 解析程序
|
||||||
|
procedure_elem = synthesis_elem.find("Procedure")
|
||||||
|
if procedure_elem is None:
|
||||||
|
return None, None, None
|
||||||
|
|
||||||
|
flattened_operations = flatten_xdl_procedure(procedure_elem)
|
||||||
|
return hardware, reagents, flattened_operations
|
||||||
|
|
||||||
|
except ET.ParseError as e:
|
||||||
|
raise ValueError(f"Invalid XDL format: {e}")
|
||||||
|
|
||||||
|
|
||||||
|
def convert_xdl_to_dict(xdl_content: str) -> Dict[str, Any]:
|
||||||
|
"""
|
||||||
|
将XDL XML格式转换为标准的字典格式
|
||||||
|
|
||||||
|
Args:
|
||||||
|
xdl_content: XDL XML内容
|
||||||
|
|
||||||
|
Returns:
|
||||||
|
转换结果,包含步骤和器材信息
|
||||||
|
"""
|
||||||
|
try:
|
||||||
|
hardware, reagents, flattened_operations = parse_xdl_content(xdl_content)
|
||||||
|
if hardware is None:
|
||||||
|
return {"error": "Failed to parse XDL content", "success": False}
|
||||||
|
|
||||||
|
# 将XDL元素转换为字典格式
|
||||||
|
steps_data = []
|
||||||
|
for elem in flattened_operations:
|
||||||
|
# 转换参数类型
|
||||||
|
parameters = {}
|
||||||
|
for key, val in elem.attrib.items():
|
||||||
|
converted_val = convert_to_type(val)
|
||||||
|
if converted_val is not None:
|
||||||
|
parameters[key] = converted_val
|
||||||
|
|
||||||
|
step_dict = {
|
||||||
|
"operation": elem.tag,
|
||||||
|
"parameters": parameters,
|
||||||
|
"description": elem.get("purpose", f"Operation: {elem.tag}"),
|
||||||
|
}
|
||||||
|
steps_data.append(step_dict)
|
||||||
|
|
||||||
|
# 合并硬件和试剂为统一的labware_info格式
|
||||||
|
labware_data = []
|
||||||
|
labware_data.extend({"id": hw["id"], "type": "hardware", **hw} for hw in hardware)
|
||||||
|
labware_data.extend({"name": reagent["name"], "type": "reagent", **reagent} for reagent in reagents)
|
||||||
|
|
||||||
|
return {
|
||||||
|
"success": True,
|
||||||
|
"steps": steps_data,
|
||||||
|
"labware": labware_data,
|
||||||
|
"message": f"Successfully converted XDL to dict format. Found {len(steps_data)} steps and {len(labware_data)} labware items.",
|
||||||
|
}
|
||||||
|
|
||||||
|
except Exception as e:
|
||||||
|
error_msg = f"XDL conversion failed: {str(e)}"
|
||||||
|
logger.error(error_msg)
|
||||||
|
return {"error": error_msg, "success": False}
|
||||||
|
|
||||||
|
|
||||||
|
def create_workflow(
|
||||||
|
steps_info: str,
|
||||||
|
labware_info: str,
|
||||||
|
workflow_name: str = "Generated Workflow",
|
||||||
|
workstation_name: str = "workstation",
|
||||||
|
workflow_description: str = "Auto-generated workflow from protocol",
|
||||||
|
) -> Dict[str, Any]:
|
||||||
|
"""
|
||||||
|
创建工作流,输入数据已经是统一的字典格式
|
||||||
|
|
||||||
|
Args:
|
||||||
|
steps_info: 步骤信息 (JSON字符串,已经是list of dict格式)
|
||||||
|
labware_info: 实验器材和试剂信息 (JSON字符串,已经是list of dict格式)
|
||||||
|
workflow_name: 工作流名称
|
||||||
|
workflow_description: 工作流描述
|
||||||
|
|
||||||
|
Returns:
|
||||||
|
创建结果,包含工作流UUID和详细信息
|
||||||
|
"""
|
||||||
|
try:
|
||||||
|
# 直接解析JSON数据
|
||||||
|
steps_info_clean = extract_json_from_markdown(steps_info)
|
||||||
|
labware_info_clean = extract_json_from_markdown(labware_info)
|
||||||
|
|
||||||
|
steps_data = json.loads(steps_info_clean)
|
||||||
|
labware_data = json.loads(labware_info_clean)
|
||||||
|
|
||||||
|
# 统一处理所有数据
|
||||||
|
protocol_graph = build_protocol_graph(labware_data, steps_data, workstation_name=workstation_name)
|
||||||
|
|
||||||
|
# 检测协议类型(用于标签)
|
||||||
|
protocol_type = "bio" if any("biomek" in step.get("template", "") for step in refactored_steps) else "organic"
|
||||||
|
|
||||||
|
# 转换为工作流格式
|
||||||
|
data = protocol_graph.to_dict()
|
||||||
|
|
||||||
|
# 转换节点格式
|
||||||
|
for i, node in enumerate(data["nodes"]):
|
||||||
|
description = node.get("description", "")
|
||||||
|
onode = {
|
||||||
|
"template": node.pop("template"),
|
||||||
|
"id": node["id"],
|
||||||
|
"lab_node_type": node.get("lab_node_type", "Device"),
|
||||||
|
"name": description or f"Node {i + 1}",
|
||||||
|
"params": {"default": node},
|
||||||
|
"handles": {},
|
||||||
|
}
|
||||||
|
|
||||||
|
# 处理边连接
|
||||||
|
for edge in data["links"]:
|
||||||
|
if edge["source"] == node["id"]:
|
||||||
|
source_port = edge.get("source_port", "output")
|
||||||
|
if source_port not in onode["handles"]:
|
||||||
|
onode["handles"][source_port] = {"type": "source"}
|
||||||
|
|
||||||
|
if edge["target"] == node["id"]:
|
||||||
|
target_port = edge.get("target_port", "input")
|
||||||
|
if target_port not in onode["handles"]:
|
||||||
|
onode["handles"][target_port] = {"type": "target"}
|
||||||
|
|
||||||
|
data["nodes"][i] = onode
|
||||||
|
|
||||||
|
# 发送到API创建工作流
|
||||||
|
api_secret = configs.Lab.Key
|
||||||
|
if not api_secret:
|
||||||
|
return {"error": "API SecretKey is not configured", "success": False}
|
||||||
|
|
||||||
|
# Step 1: 创建工作流
|
||||||
|
workflow_url = f"{configs.Lab.Api}/api/v1/workflow/"
|
||||||
|
headers = {
|
||||||
|
"Content-Type": "application/json",
|
||||||
|
}
|
||||||
|
params = {"secret_key": api_secret}
|
||||||
|
|
||||||
|
graph_data = {"name": workflow_name, **data}
|
||||||
|
|
||||||
|
logger.info(f"Creating workflow: {workflow_name}")
|
||||||
|
response = requests.post(
|
||||||
|
workflow_url, params=params, json=graph_data, headers=headers, timeout=configs.Lab.Timeout
|
||||||
|
)
|
||||||
|
response.raise_for_status()
|
||||||
|
|
||||||
|
workflow_info = response.json()
|
||||||
|
|
||||||
|
if workflow_info.get("code") != 0:
|
||||||
|
error_msg = f"API returned an error: {workflow_info.get('msg', 'Unknown Error')}"
|
||||||
|
logger.error(error_msg)
|
||||||
|
return {"error": error_msg, "success": False}
|
||||||
|
|
||||||
|
workflow_uuid = workflow_info.get("data", {}).get("uuid")
|
||||||
|
if not workflow_uuid:
|
||||||
|
return {"error": "Failed to get workflow UUID from response", "success": False}
|
||||||
|
|
||||||
|
# Step 2: 添加到模板库(可选)
|
||||||
|
try:
|
||||||
|
library_url = f"{configs.Lab.Api}/api/flociety/vs/workflows/library/"
|
||||||
|
lib_payload = {
|
||||||
|
"workflow_uuid": workflow_uuid,
|
||||||
|
"title": workflow_name,
|
||||||
|
"description": workflow_description,
|
||||||
|
"labels": [protocol_type.title(), "Auto-generated"],
|
||||||
|
}
|
||||||
|
|
||||||
|
library_response = requests.post(
|
||||||
|
library_url, params=params, json=lib_payload, headers=headers, timeout=configs.Lab.Timeout
|
||||||
|
)
|
||||||
|
library_response.raise_for_status()
|
||||||
|
|
||||||
|
library_info = library_response.json()
|
||||||
|
logger.info(f"Workflow added to library: {library_info}")
|
||||||
|
|
||||||
|
return {
|
||||||
|
"success": True,
|
||||||
|
"workflow_uuid": workflow_uuid,
|
||||||
|
"workflow_info": workflow_info.get("data"),
|
||||||
|
"library_info": library_info.get("data"),
|
||||||
|
"protocol_type": protocol_type,
|
||||||
|
"message": f"Workflow '{workflow_name}' created successfully",
|
||||||
|
}
|
||||||
|
|
||||||
|
except Exception as e:
|
||||||
|
# 即使添加到库失败,工作流创建仍然成功
|
||||||
|
logger.warning(f"Failed to add workflow to library: {str(e)}")
|
||||||
|
return {
|
||||||
|
"success": True,
|
||||||
|
"workflow_uuid": workflow_uuid,
|
||||||
|
"workflow_info": workflow_info.get("data"),
|
||||||
|
"protocol_type": protocol_type,
|
||||||
|
"message": f"Workflow '{workflow_name}' created successfully (library addition failed)",
|
||||||
|
}
|
||||||
|
|
||||||
|
except requests.exceptions.RequestException as e:
|
||||||
|
error_msg = f"Network error when calling API: {str(e)}"
|
||||||
|
logger.error(error_msg)
|
||||||
|
return {"error": error_msg, "success": False}
|
||||||
|
except json.JSONDecodeError as e:
|
||||||
|
error_msg = f"JSON parsing error: {str(e)}"
|
||||||
|
logger.error(error_msg)
|
||||||
|
return {"error": error_msg, "success": False}
|
||||||
|
except Exception as e:
|
||||||
|
error_msg = f"An unexpected error occurred: {str(e)}"
|
||||||
|
logger.error(error_msg)
|
||||||
|
logger.error(traceback.format_exc())
|
||||||
|
return {"error": error_msg, "success": False}
|
||||||
@@ -8,7 +8,7 @@
|
|||||||
],
|
],
|
||||||
"parent": null,
|
"parent": null,
|
||||||
"type": "device",
|
"type": "device",
|
||||||
"class": "workstation.bioyond_dispensing_station",
|
"class": "bioyond_dispensing_station",
|
||||||
"config": {
|
"config": {
|
||||||
"config": {
|
"config": {
|
||||||
"api_key": "DE9BDDA0",
|
"api_key": "DE9BDDA0",
|
||||||
|
|||||||
186
test/workflow/example_bio.json
Normal file
186
test/workflow/example_bio.json
Normal file
@@ -0,0 +1,186 @@
|
|||||||
|
{
|
||||||
|
"workflow": [
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_1",
|
||||||
|
"targets": "Liquid_2",
|
||||||
|
"asp_vol": 66.0,
|
||||||
|
"dis_vol": 66.0,
|
||||||
|
"asp_flow_rate": 94.0,
|
||||||
|
"dis_flow_rate": 94.0
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_2",
|
||||||
|
"targets": "Liquid_3",
|
||||||
|
"asp_vol": 58.0,
|
||||||
|
"dis_vol": 96.0,
|
||||||
|
"asp_flow_rate": 94.0,
|
||||||
|
"dis_flow_rate": 94.0
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_4",
|
||||||
|
"targets": "Liquid_2",
|
||||||
|
"asp_vol": 85.0,
|
||||||
|
"dis_vol": 170.0,
|
||||||
|
"asp_flow_rate": 94.0,
|
||||||
|
"dis_flow_rate": 94.0
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_4",
|
||||||
|
"targets": "Liquid_2",
|
||||||
|
"asp_vol": 63.333333333333336,
|
||||||
|
"dis_vol": 170.0,
|
||||||
|
"asp_flow_rate": 94.0,
|
||||||
|
"dis_flow_rate": 94.0
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_2",
|
||||||
|
"targets": "Liquid_3",
|
||||||
|
"asp_vol": 72.0,
|
||||||
|
"dis_vol": 150.0,
|
||||||
|
"asp_flow_rate": 94.0,
|
||||||
|
"dis_flow_rate": 94.0
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_4",
|
||||||
|
"targets": "Liquid_2",
|
||||||
|
"asp_vol": 85.0,
|
||||||
|
"dis_vol": 170.0,
|
||||||
|
"asp_flow_rate": 94.0,
|
||||||
|
"dis_flow_rate": 94.0
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_4",
|
||||||
|
"targets": "Liquid_2",
|
||||||
|
"asp_vol": 63.333333333333336,
|
||||||
|
"dis_vol": 170.0,
|
||||||
|
"asp_flow_rate": 94.0,
|
||||||
|
"dis_flow_rate": 94.0
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_2",
|
||||||
|
"targets": "Liquid_3",
|
||||||
|
"asp_vol": 72.0,
|
||||||
|
"dis_vol": 150.0,
|
||||||
|
"asp_flow_rate": 94.0,
|
||||||
|
"dis_flow_rate": 94.0
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_2",
|
||||||
|
"targets": "Liquid_3",
|
||||||
|
"asp_vol": 20.0,
|
||||||
|
"dis_vol": 20.0,
|
||||||
|
"asp_flow_rate": 7.6,
|
||||||
|
"dis_flow_rate": 7.6
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_5",
|
||||||
|
"targets": "Liquid_2",
|
||||||
|
"asp_vol": 6.0,
|
||||||
|
"dis_vol": 12.0,
|
||||||
|
"asp_flow_rate": 7.6,
|
||||||
|
"dis_flow_rate": 7.6
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_5",
|
||||||
|
"targets": "Liquid_2",
|
||||||
|
"asp_vol": 10.666666666666666,
|
||||||
|
"dis_vol": 12.0,
|
||||||
|
"asp_flow_rate": 7.599999999999999,
|
||||||
|
"dis_flow_rate": 7.6
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"action_args": {
|
||||||
|
"sources": "Liquid_2",
|
||||||
|
"targets": "Liquid_6",
|
||||||
|
"asp_vol": 12.0,
|
||||||
|
"dis_vol": 10.0,
|
||||||
|
"asp_flow_rate": 7.6,
|
||||||
|
"dis_flow_rate": 7.6
|
||||||
|
}
|
||||||
|
}
|
||||||
|
],
|
||||||
|
"reagent": {
|
||||||
|
"Liquid_6": {
|
||||||
|
"slot": 1,
|
||||||
|
"well": [
|
||||||
|
"A2"
|
||||||
|
],
|
||||||
|
"labware": "elution plate"
|
||||||
|
},
|
||||||
|
"Liquid_1": {
|
||||||
|
"slot": 2,
|
||||||
|
"well": [
|
||||||
|
"A1",
|
||||||
|
"A2",
|
||||||
|
"A4"
|
||||||
|
],
|
||||||
|
"labware": "reagent reservoir"
|
||||||
|
},
|
||||||
|
"Liquid_4": {
|
||||||
|
"slot": 2,
|
||||||
|
"well": [
|
||||||
|
"A1",
|
||||||
|
"A2",
|
||||||
|
"A4"
|
||||||
|
],
|
||||||
|
"labware": "reagent reservoir"
|
||||||
|
},
|
||||||
|
"Liquid_5": {
|
||||||
|
"slot": 2,
|
||||||
|
"well": [
|
||||||
|
"A1",
|
||||||
|
"A2",
|
||||||
|
"A4"
|
||||||
|
],
|
||||||
|
"labware": "reagent reservoir"
|
||||||
|
},
|
||||||
|
"Liquid_2": {
|
||||||
|
"slot": 4,
|
||||||
|
"well": [
|
||||||
|
"A2"
|
||||||
|
],
|
||||||
|
"labware": "TAG1 plate on Magnetic Module GEN2"
|
||||||
|
},
|
||||||
|
"Liquid_3": {
|
||||||
|
"slot": 12,
|
||||||
|
"well": [
|
||||||
|
"A1"
|
||||||
|
],
|
||||||
|
"labware": "Opentrons Fixed Trash"
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
BIN
test/workflow/example_bio_graph.png
Normal file
BIN
test/workflow/example_bio_graph.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 148 KiB |
63
test/workflow/example_prcxi.json
Normal file
63
test/workflow/example_prcxi.json
Normal file
@@ -0,0 +1,63 @@
|
|||||||
|
{
|
||||||
|
"steps_info": [
|
||||||
|
{
|
||||||
|
"step_number": 1,
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"parameters": {
|
||||||
|
"source": "sample supernatant",
|
||||||
|
"target": "antibody-coated well",
|
||||||
|
"volume": 100
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"step_number": 2,
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"parameters": {
|
||||||
|
"source": "washing buffer",
|
||||||
|
"target": "antibody-coated well",
|
||||||
|
"volume": 200
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"step_number": 3,
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"parameters": {
|
||||||
|
"source": "washing buffer",
|
||||||
|
"target": "antibody-coated well",
|
||||||
|
"volume": 200
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"step_number": 4,
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"parameters": {
|
||||||
|
"source": "washing buffer",
|
||||||
|
"target": "antibody-coated well",
|
||||||
|
"volume": 200
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"step_number": 5,
|
||||||
|
"action": "transfer_liquid",
|
||||||
|
"parameters": {
|
||||||
|
"source": "TMB substrate",
|
||||||
|
"target": "antibody-coated well",
|
||||||
|
"volume": 100
|
||||||
|
}
|
||||||
|
}
|
||||||
|
],
|
||||||
|
"labware_info": [
|
||||||
|
{"reagent_name": "sample supernatant", "material_name": "96深孔板", "positions": 1},
|
||||||
|
{"reagent_name": "washing buffer", "material_name": "储液槽", "positions": 2},
|
||||||
|
{"reagent_name": "TMB substrate", "material_name": "储液槽", "positions": 3},
|
||||||
|
{"reagent_name": "antibody-coated well", "material_name": "96 细胞培养皿", "positions": 4},
|
||||||
|
{"reagent_name": "", "material_name": "300μL Tip头", "positions": 5},
|
||||||
|
{"reagent_name": "", "material_name": "300μL Tip头", "positions": 6},
|
||||||
|
{"reagent_name": "", "material_name": "300μL Tip头", "positions": 7},
|
||||||
|
{"reagent_name": "", "material_name": "300μL Tip头", "positions": 8},
|
||||||
|
{"reagent_name": "", "material_name": "300μL Tip头", "positions": 9},
|
||||||
|
{"reagent_name": "", "material_name": "300μL Tip头", "positions": 10},
|
||||||
|
{"reagent_name": "", "material_name": "300μL Tip头", "positions": 11},
|
||||||
|
{"reagent_name": "", "material_name": "300μL Tip头", "positions": 13}
|
||||||
|
]
|
||||||
|
}
|
||||||
BIN
test/workflow/example_prcxi_graph.png
Normal file
BIN
test/workflow/example_prcxi_graph.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 140 KiB |
BIN
test/workflow/example_prcxi_graph_20251022_1359.png
Normal file
BIN
test/workflow/example_prcxi_graph_20251022_1359.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 117 KiB |
94
test/workflow/merge_workflow.py
Normal file
94
test/workflow/merge_workflow.py
Normal file
@@ -0,0 +1,94 @@
|
|||||||
|
import json
|
||||||
|
import sys
|
||||||
|
from datetime import datetime
|
||||||
|
from pathlib import Path
|
||||||
|
|
||||||
|
ROOT_DIR = Path(__file__).resolve().parents[2]
|
||||||
|
if str(ROOT_DIR) not in sys.path:
|
||||||
|
sys.path.insert(0, str(ROOT_DIR))
|
||||||
|
|
||||||
|
import pytest
|
||||||
|
|
||||||
|
from scripts.workflow import build_protocol_graph, draw_protocol_graph, draw_protocol_graph_with_ports
|
||||||
|
|
||||||
|
|
||||||
|
ROOT_DIR = Path(__file__).resolve().parents[2]
|
||||||
|
if str(ROOT_DIR) not in sys.path:
|
||||||
|
sys.path.insert(0, str(ROOT_DIR))
|
||||||
|
|
||||||
|
|
||||||
|
def _normalize_steps(data):
|
||||||
|
normalized = []
|
||||||
|
for step in data:
|
||||||
|
action = step.get("action") or step.get("operation")
|
||||||
|
if not action:
|
||||||
|
continue
|
||||||
|
raw_params = step.get("parameters") or step.get("action_args") or {}
|
||||||
|
params = dict(raw_params)
|
||||||
|
|
||||||
|
if "source" in raw_params and "sources" not in raw_params:
|
||||||
|
params["sources"] = raw_params["source"]
|
||||||
|
if "target" in raw_params and "targets" not in raw_params:
|
||||||
|
params["targets"] = raw_params["target"]
|
||||||
|
|
||||||
|
description = step.get("description") or step.get("purpose")
|
||||||
|
step_dict = {"action": action, "parameters": params}
|
||||||
|
if description:
|
||||||
|
step_dict["description"] = description
|
||||||
|
normalized.append(step_dict)
|
||||||
|
return normalized
|
||||||
|
|
||||||
|
|
||||||
|
def _normalize_labware(data):
|
||||||
|
labware = {}
|
||||||
|
for item in data:
|
||||||
|
reagent_name = item.get("reagent_name")
|
||||||
|
key = reagent_name or item.get("material_name") or item.get("name")
|
||||||
|
if not key:
|
||||||
|
continue
|
||||||
|
key = str(key)
|
||||||
|
idx = 1
|
||||||
|
original_key = key
|
||||||
|
while key in labware:
|
||||||
|
idx += 1
|
||||||
|
key = f"{original_key}_{idx}"
|
||||||
|
|
||||||
|
labware[key] = {
|
||||||
|
"slot": item.get("positions") or item.get("slot"),
|
||||||
|
"labware": item.get("material_name") or item.get("labware"),
|
||||||
|
"well": item.get("well", []),
|
||||||
|
"type": item.get("type", "reagent"),
|
||||||
|
"role": item.get("role", ""),
|
||||||
|
"name": key,
|
||||||
|
}
|
||||||
|
return labware
|
||||||
|
|
||||||
|
|
||||||
|
@pytest.mark.parametrize("protocol_name", [
|
||||||
|
"example_bio",
|
||||||
|
# "bioyond_materials_liquidhandling_1",
|
||||||
|
"example_prcxi",
|
||||||
|
])
|
||||||
|
def test_build_protocol_graph(protocol_name):
|
||||||
|
data_path = Path(__file__).with_name(f"{protocol_name}.json")
|
||||||
|
with data_path.open("r", encoding="utf-8") as fp:
|
||||||
|
d = json.load(fp)
|
||||||
|
|
||||||
|
if "workflow" in d and "reagent" in d:
|
||||||
|
protocol_steps = d["workflow"]
|
||||||
|
labware_info = d["reagent"]
|
||||||
|
elif "steps_info" in d and "labware_info" in d:
|
||||||
|
protocol_steps = _normalize_steps(d["steps_info"])
|
||||||
|
labware_info = _normalize_labware(d["labware_info"])
|
||||||
|
else:
|
||||||
|
raise ValueError("Unsupported protocol format")
|
||||||
|
|
||||||
|
graph = build_protocol_graph(
|
||||||
|
labware_info=labware_info,
|
||||||
|
protocol_steps=protocol_steps,
|
||||||
|
workstation_name="PRCXi",
|
||||||
|
)
|
||||||
|
timestamp = datetime.now().strftime("%Y%m%d_%H%M")
|
||||||
|
output_path = data_path.with_name(f"{protocol_name}_graph_{timestamp}.png")
|
||||||
|
draw_protocol_graph_with_ports(graph, str(output_path))
|
||||||
|
print(graph)
|
||||||
@@ -6,6 +6,8 @@ HTTP客户端模块
|
|||||||
|
|
||||||
import json
|
import json
|
||||||
import os
|
import os
|
||||||
|
import time
|
||||||
|
from threading import Thread
|
||||||
from typing import List, Dict, Any, Optional
|
from typing import List, Dict, Any, Optional
|
||||||
|
|
||||||
import requests
|
import requests
|
||||||
@@ -84,14 +86,14 @@ class HTTPClient:
|
|||||||
f"{self.remote_addr}/edge/material",
|
f"{self.remote_addr}/edge/material",
|
||||||
json={"nodes": [x for xs in resources.dump() for x in xs], "mount_uuid": mount_uuid},
|
json={"nodes": [x for xs in resources.dump() for x in xs], "mount_uuid": mount_uuid},
|
||||||
headers={"Authorization": f"Lab {self.auth}"},
|
headers={"Authorization": f"Lab {self.auth}"},
|
||||||
timeout=100,
|
timeout=60,
|
||||||
)
|
)
|
||||||
else:
|
else:
|
||||||
response = requests.put(
|
response = requests.put(
|
||||||
f"{self.remote_addr}/edge/material",
|
f"{self.remote_addr}/edge/material",
|
||||||
json={"nodes": [x for xs in resources.dump() for x in xs], "mount_uuid": mount_uuid},
|
json={"nodes": [x for xs in resources.dump() for x in xs], "mount_uuid": mount_uuid},
|
||||||
headers={"Authorization": f"Lab {self.auth}"},
|
headers={"Authorization": f"Lab {self.auth}"},
|
||||||
timeout=100,
|
timeout=10,
|
||||||
)
|
)
|
||||||
|
|
||||||
with open(os.path.join(BasicConfig.working_dir, "res_resource_tree_add.json"), "w", encoding="utf-8") as f:
|
with open(os.path.join(BasicConfig.working_dir, "res_resource_tree_add.json"), "w", encoding="utf-8") as f:
|
||||||
@@ -126,12 +128,16 @@ class HTTPClient:
|
|||||||
Returns:
|
Returns:
|
||||||
Dict[str, str]: 旧UUID到新UUID的映射关系 {old_uuid: new_uuid}
|
Dict[str, str]: 旧UUID到新UUID的映射关系 {old_uuid: new_uuid}
|
||||||
"""
|
"""
|
||||||
|
with open(os.path.join(BasicConfig.working_dir, "req_resource_tree_get.json"), "w", encoding="utf-8") as f:
|
||||||
|
f.write(json.dumps({"uuids": uuid_list, "with_children": with_children}, indent=4))
|
||||||
response = requests.post(
|
response = requests.post(
|
||||||
f"{self.remote_addr}/edge/material/query",
|
f"{self.remote_addr}/edge/material/query",
|
||||||
json={"uuids": uuid_list, "with_children": with_children},
|
json={"uuids": uuid_list, "with_children": with_children},
|
||||||
headers={"Authorization": f"Lab {self.auth}"},
|
headers={"Authorization": f"Lab {self.auth}"},
|
||||||
timeout=100,
|
timeout=100,
|
||||||
)
|
)
|
||||||
|
with open(os.path.join(BasicConfig.working_dir, "res_resource_tree_get.json"), "w", encoding="utf-8") as f:
|
||||||
|
f.write(f"{response.status_code}" + "\n" + response.text)
|
||||||
if response.status_code == 200:
|
if response.status_code == 200:
|
||||||
res = response.json()
|
res = response.json()
|
||||||
if "code" in res and res["code"] != 0:
|
if "code" in res and res["code"] != 0:
|
||||||
@@ -187,12 +193,16 @@ class HTTPClient:
|
|||||||
Returns:
|
Returns:
|
||||||
Dict: 返回的资源数据
|
Dict: 返回的资源数据
|
||||||
"""
|
"""
|
||||||
|
with open(os.path.join(BasicConfig.working_dir, "req_resource_get.json"), "w", encoding="utf-8") as f:
|
||||||
|
f.write(json.dumps({"id": id, "with_children": with_children}, indent=4))
|
||||||
response = requests.get(
|
response = requests.get(
|
||||||
f"{self.remote_addr}/lab/material",
|
f"{self.remote_addr}/lab/material",
|
||||||
params={"id": id, "with_children": with_children},
|
params={"id": id, "with_children": with_children},
|
||||||
headers={"Authorization": f"Lab {self.auth}"},
|
headers={"Authorization": f"Lab {self.auth}"},
|
||||||
timeout=20,
|
timeout=20,
|
||||||
)
|
)
|
||||||
|
with open(os.path.join(BasicConfig.working_dir, "res_resource_get.json"), "w", encoding="utf-8") as f:
|
||||||
|
f.write(f"{response.status_code}" + "\n" + response.text)
|
||||||
return response.json()
|
return response.json()
|
||||||
|
|
||||||
def resource_del(self, id: str) -> requests.Response:
|
def resource_del(self, id: str) -> requests.Response:
|
||||||
|
|||||||
@@ -7,7 +7,7 @@ from unilabos.devices.workstation.bioyond_studio.station import BioyondWorkstati
|
|||||||
|
|
||||||
class BioyondDispensingStation(BioyondWorkstation):
|
class BioyondDispensingStation(BioyondWorkstation):
|
||||||
def __init__(
|
def __init__(
|
||||||
self,
|
self,
|
||||||
config,
|
config,
|
||||||
# 桌子
|
# 桌子
|
||||||
deck,
|
deck,
|
||||||
@@ -77,7 +77,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
- hold_m_name: 库位名称,如"C01",用于查找对应的holdMId
|
- hold_m_name: 库位名称,如"C01",用于查找对应的holdMId
|
||||||
|
|
||||||
返回: 任务创建结果
|
返回: 任务创建结果
|
||||||
|
|
||||||
异常:
|
异常:
|
||||||
- BioyondException: 各种错误情况下的统一异常
|
- BioyondException: 各种错误情况下的统一异常
|
||||||
"""
|
"""
|
||||||
@@ -85,7 +85,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
# 1. 参数验证
|
# 1. 参数验证
|
||||||
if not hold_m_name:
|
if not hold_m_name:
|
||||||
raise BioyondException("hold_m_name 是必填参数")
|
raise BioyondException("hold_m_name 是必填参数")
|
||||||
|
|
||||||
# 检查90%物料参数的完整性
|
# 检查90%物料参数的完整性
|
||||||
# 90%_1物料:如果有物料名称或目标重量,就必须有全部参数
|
# 90%_1物料:如果有物料名称或目标重量,就必须有全部参数
|
||||||
if percent_90_1_assign_material_name or percent_90_1_target_weigh:
|
if percent_90_1_assign_material_name or percent_90_1_target_weigh:
|
||||||
@@ -93,21 +93,21 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
raise BioyondException("90%_1物料:如果提供了目标重量,必须同时提供物料名称")
|
raise BioyondException("90%_1物料:如果提供了目标重量,必须同时提供物料名称")
|
||||||
if not percent_90_1_target_weigh:
|
if not percent_90_1_target_weigh:
|
||||||
raise BioyondException("90%_1物料:如果提供了物料名称,必须同时提供目标重量")
|
raise BioyondException("90%_1物料:如果提供了物料名称,必须同时提供目标重量")
|
||||||
|
|
||||||
# 90%_2物料:如果有物料名称或目标重量,就必须有全部参数
|
# 90%_2物料:如果有物料名称或目标重量,就必须有全部参数
|
||||||
if percent_90_2_assign_material_name or percent_90_2_target_weigh:
|
if percent_90_2_assign_material_name or percent_90_2_target_weigh:
|
||||||
if not percent_90_2_assign_material_name:
|
if not percent_90_2_assign_material_name:
|
||||||
raise BioyondException("90%_2物料:如果提供了目标重量,必须同时提供物料名称")
|
raise BioyondException("90%_2物料:如果提供了目标重量,必须同时提供物料名称")
|
||||||
if not percent_90_2_target_weigh:
|
if not percent_90_2_target_weigh:
|
||||||
raise BioyondException("90%_2物料:如果提供了物料名称,必须同时提供目标重量")
|
raise BioyondException("90%_2物料:如果提供了物料名称,必须同时提供目标重量")
|
||||||
|
|
||||||
# 90%_3物料:如果有物料名称或目标重量,就必须有全部参数
|
# 90%_3物料:如果有物料名称或目标重量,就必须有全部参数
|
||||||
if percent_90_3_assign_material_name or percent_90_3_target_weigh:
|
if percent_90_3_assign_material_name or percent_90_3_target_weigh:
|
||||||
if not percent_90_3_assign_material_name:
|
if not percent_90_3_assign_material_name:
|
||||||
raise BioyondException("90%_3物料:如果提供了目标重量,必须同时提供物料名称")
|
raise BioyondException("90%_3物料:如果提供了目标重量,必须同时提供物料名称")
|
||||||
if not percent_90_3_target_weigh:
|
if not percent_90_3_target_weigh:
|
||||||
raise BioyondException("90%_3物料:如果提供了物料名称,必须同时提供目标重量")
|
raise BioyondException("90%_3物料:如果提供了物料名称,必须同时提供目标重量")
|
||||||
|
|
||||||
# 检查10%物料参数的完整性
|
# 检查10%物料参数的完整性
|
||||||
# 10%_1物料:如果有物料名称、目标重量、体积或液体物料名称中的任何一个,就必须有全部参数
|
# 10%_1物料:如果有物料名称、目标重量、体积或液体物料名称中的任何一个,就必须有全部参数
|
||||||
if any([percent_10_1_assign_material_name, percent_10_1_target_weigh, percent_10_1_volume, percent_10_1_liquid_material_name]):
|
if any([percent_10_1_assign_material_name, percent_10_1_target_weigh, percent_10_1_volume, percent_10_1_liquid_material_name]):
|
||||||
@@ -119,7 +119,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
raise BioyondException("10%_1物料:如果提供了其他参数,必须同时提供液体体积")
|
raise BioyondException("10%_1物料:如果提供了其他参数,必须同时提供液体体积")
|
||||||
if not percent_10_1_liquid_material_name:
|
if not percent_10_1_liquid_material_name:
|
||||||
raise BioyondException("10%_1物料:如果提供了其他参数,必须同时提供液体物料名称")
|
raise BioyondException("10%_1物料:如果提供了其他参数,必须同时提供液体物料名称")
|
||||||
|
|
||||||
# 10%_2物料:如果有物料名称、目标重量、体积或液体物料名称中的任何一个,就必须有全部参数
|
# 10%_2物料:如果有物料名称、目标重量、体积或液体物料名称中的任何一个,就必须有全部参数
|
||||||
if any([percent_10_2_assign_material_name, percent_10_2_target_weigh, percent_10_2_volume, percent_10_2_liquid_material_name]):
|
if any([percent_10_2_assign_material_name, percent_10_2_target_weigh, percent_10_2_volume, percent_10_2_liquid_material_name]):
|
||||||
if not percent_10_2_assign_material_name:
|
if not percent_10_2_assign_material_name:
|
||||||
@@ -130,7 +130,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
raise BioyondException("10%_2物料:如果提供了其他参数,必须同时提供液体体积")
|
raise BioyondException("10%_2物料:如果提供了其他参数,必须同时提供液体体积")
|
||||||
if not percent_10_2_liquid_material_name:
|
if not percent_10_2_liquid_material_name:
|
||||||
raise BioyondException("10%_2物料:如果提供了其他参数,必须同时提供液体物料名称")
|
raise BioyondException("10%_2物料:如果提供了其他参数,必须同时提供液体物料名称")
|
||||||
|
|
||||||
# 10%_3物料:如果有物料名称、目标重量、体积或液体物料名称中的任何一个,就必须有全部参数
|
# 10%_3物料:如果有物料名称、目标重量、体积或液体物料名称中的任何一个,就必须有全部参数
|
||||||
if any([percent_10_3_assign_material_name, percent_10_3_target_weigh, percent_10_3_volume, percent_10_3_liquid_material_name]):
|
if any([percent_10_3_assign_material_name, percent_10_3_target_weigh, percent_10_3_volume, percent_10_3_liquid_material_name]):
|
||||||
if not percent_10_3_assign_material_name:
|
if not percent_10_3_assign_material_name:
|
||||||
@@ -141,7 +141,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
raise BioyondException("10%_3物料:如果提供了其他参数,必须同时提供液体体积")
|
raise BioyondException("10%_3物料:如果提供了其他参数,必须同时提供液体体积")
|
||||||
if not percent_10_3_liquid_material_name:
|
if not percent_10_3_liquid_material_name:
|
||||||
raise BioyondException("10%_3物料:如果提供了其他参数,必须同时提供液体物料名称")
|
raise BioyondException("10%_3物料:如果提供了其他参数,必须同时提供液体物料名称")
|
||||||
|
|
||||||
# 2. 生成任务编码和设置默认值
|
# 2. 生成任务编码和设置默认值
|
||||||
order_code = "task_vial_" + str(int(datetime.now().timestamp()))
|
order_code = "task_vial_" + str(int(datetime.now().timestamp()))
|
||||||
if order_name is None:
|
if order_name is None:
|
||||||
@@ -152,7 +152,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
temperature = "40"
|
temperature = "40"
|
||||||
if delay_time is None:
|
if delay_time is None:
|
||||||
delay_time = "600"
|
delay_time = "600"
|
||||||
|
|
||||||
# 3. 工作流ID
|
# 3. 工作流ID
|
||||||
workflow_id = "3a19310d-16b9-9d81-b109-0748e953694b"
|
workflow_id = "3a19310d-16b9-9d81-b109-0748e953694b"
|
||||||
|
|
||||||
@@ -160,22 +160,22 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
material_info = self.hardware_interface.material_id_query(workflow_id)
|
material_info = self.hardware_interface.material_id_query(workflow_id)
|
||||||
if not material_info:
|
if not material_info:
|
||||||
raise BioyondException(f"无法查询工作流 {workflow_id} 的物料信息")
|
raise BioyondException(f"无法查询工作流 {workflow_id} 的物料信息")
|
||||||
|
|
||||||
# 获取locations列表
|
# 获取locations列表
|
||||||
locations = material_info.get("locations", []) if isinstance(material_info, dict) else []
|
locations = material_info.get("locations", []) if isinstance(material_info, dict) else []
|
||||||
if not locations:
|
if not locations:
|
||||||
raise BioyondException(f"工作流 {workflow_id} 没有找到库位信息")
|
raise BioyondException(f"工作流 {workflow_id} 没有找到库位信息")
|
||||||
|
|
||||||
# 查找指定名称的库位
|
# 查找指定名称的库位
|
||||||
hold_mid = None
|
hold_mid = None
|
||||||
for location in locations:
|
for location in locations:
|
||||||
if location.get("holdMName") == hold_m_name:
|
if location.get("holdMName") == hold_m_name:
|
||||||
hold_mid = location.get("holdMId")
|
hold_mid = location.get("holdMId")
|
||||||
break
|
break
|
||||||
|
|
||||||
if not hold_mid:
|
if not hold_mid:
|
||||||
raise BioyondException(f"未找到库位名称为 {hold_m_name} 的库位,请检查名称是否正确")
|
raise BioyondException(f"未找到库位名称为 {hold_m_name} 的库位,请检查名称是否正确")
|
||||||
|
|
||||||
extend_properties = f"{{\"{ hold_mid }\": {{}}}}"
|
extend_properties = f"{{\"{ hold_mid }\": {{}}}}"
|
||||||
self.hardware_interface._logger.info(f"找到库位 {hold_m_name} 对应的holdMId: {hold_mid}")
|
self.hardware_interface._logger.info(f"找到库位 {hold_m_name} 对应的holdMId: {hold_mid}")
|
||||||
|
|
||||||
@@ -271,7 +271,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
result = self.hardware_interface.create_order(json_str)
|
result = self.hardware_interface.create_order(json_str)
|
||||||
self.hardware_interface._logger.info(f"创建90%10%小瓶投料任务结果: {result}")
|
self.hardware_interface._logger.info(f"创建90%10%小瓶投料任务结果: {result}")
|
||||||
return json.dumps({"suc": True})
|
return json.dumps({"suc": True})
|
||||||
|
|
||||||
except BioyondException:
|
except BioyondException:
|
||||||
# 重新抛出BioyondException
|
# 重新抛出BioyondException
|
||||||
raise
|
raise
|
||||||
@@ -307,7 +307,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
- hold_m_name: 库位名称,如"ODA-1",用于查找对应的holdMId
|
- hold_m_name: 库位名称,如"ODA-1",用于查找对应的holdMId
|
||||||
|
|
||||||
返回: 任务创建结果
|
返回: 任务创建结果
|
||||||
|
|
||||||
异常:
|
异常:
|
||||||
- BioyondException: 各种错误情况下的统一异常
|
- BioyondException: 各种错误情况下的统一异常
|
||||||
"""
|
"""
|
||||||
@@ -321,8 +321,8 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
raise BioyondException("volume 是必填参数")
|
raise BioyondException("volume 是必填参数")
|
||||||
if not hold_m_name:
|
if not hold_m_name:
|
||||||
raise BioyondException("hold_m_name 是必填参数")
|
raise BioyondException("hold_m_name 是必填参数")
|
||||||
|
|
||||||
|
|
||||||
# 2. 生成任务编码和设置默认值
|
# 2. 生成任务编码和设置默认值
|
||||||
order_code = "task_oda_" + str(int(datetime.now().timestamp()))
|
order_code = "task_oda_" + str(int(datetime.now().timestamp()))
|
||||||
if order_name is None:
|
if order_name is None:
|
||||||
@@ -333,30 +333,30 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
temperature = "20"
|
temperature = "20"
|
||||||
if delay_time is None:
|
if delay_time is None:
|
||||||
delay_time = "600"
|
delay_time = "600"
|
||||||
|
|
||||||
# 3. 工作流ID - 二胺溶液配置工作流
|
# 3. 工作流ID - 二胺溶液配置工作流
|
||||||
workflow_id = "3a15d4a1-3bbe-76f9-a458-292896a338f5"
|
workflow_id = "3a15d4a1-3bbe-76f9-a458-292896a338f5"
|
||||||
|
|
||||||
# 4. 查询工作流对应的holdMID
|
# 4. 查询工作流对应的holdMID
|
||||||
material_info = self.material_id_query(workflow_id)
|
material_info = self.hardware_interface.material_id_query(workflow_id)
|
||||||
if not material_info:
|
if not material_info:
|
||||||
raise BioyondException(f"无法查询工作流 {workflow_id} 的物料信息")
|
raise BioyondException(f"无法查询工作流 {workflow_id} 的物料信息")
|
||||||
|
|
||||||
# 获取locations列表
|
# 获取locations列表
|
||||||
locations = material_info.get("locations", []) if isinstance(material_info, dict) else []
|
locations = material_info.get("locations", []) if isinstance(material_info, dict) else []
|
||||||
if not locations:
|
if not locations:
|
||||||
raise BioyondException(f"工作流 {workflow_id} 没有找到库位信息")
|
raise BioyondException(f"工作流 {workflow_id} 没有找到库位信息")
|
||||||
|
|
||||||
# 查找指定名称的库位
|
# 查找指定名称的库位
|
||||||
hold_mid = None
|
hold_mid = None
|
||||||
for location in locations:
|
for location in locations:
|
||||||
if location.get("holdMName") == hold_m_name:
|
if location.get("holdMName") == hold_m_name:
|
||||||
hold_mid = location.get("holdMId")
|
hold_mid = location.get("holdMId")
|
||||||
break
|
break
|
||||||
|
|
||||||
if not hold_mid:
|
if not hold_mid:
|
||||||
raise BioyondException(f"未找到库位名称为 {hold_m_name} 的库位,请检查名称是否正确")
|
raise BioyondException(f"未找到库位名称为 {hold_m_name} 的库位,请检查名称是否正确")
|
||||||
|
|
||||||
extend_properties = f"{{\"{ hold_mid }\": {{}}}}"
|
extend_properties = f"{{\"{ hold_mid }\": {{}}}}"
|
||||||
self.hardware_interface._logger.info(f"找到库位 {hold_m_name} 对应的holdMId: {hold_mid}")
|
self.hardware_interface._logger.info(f"找到库位 {hold_m_name} 对应的holdMId: {hold_mid}")
|
||||||
|
|
||||||
@@ -397,9 +397,9 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
# 7. 调用create_order方法创建任务
|
# 7. 调用create_order方法创建任务
|
||||||
result = self.hardware_interface.create_order(json_str)
|
result = self.hardware_interface.create_order(json_str)
|
||||||
self.hardware_interface._logger.info(f"创建二胺溶液配置任务结果: {result}")
|
self.hardware_interface._logger.info(f"创建二胺溶液配置任务结果: {result}")
|
||||||
|
|
||||||
return json.dumps({"suc": True})
|
return json.dumps({"suc": True})
|
||||||
|
|
||||||
except BioyondException:
|
except BioyondException:
|
||||||
# 重新抛出BioyondException
|
# 重新抛出BioyondException
|
||||||
raise
|
raise
|
||||||
@@ -409,17 +409,278 @@ class BioyondDispensingStation(BioyondWorkstation):
|
|||||||
self.hardware_interface._logger.error(error_msg)
|
self.hardware_interface._logger.error(error_msg)
|
||||||
raise BioyondException(error_msg)
|
raise BioyondException(error_msg)
|
||||||
|
|
||||||
|
# 批量创建二胺溶液配置任务
|
||||||
|
def batch_create_diamine_solution_tasks(self,
|
||||||
|
solutions,
|
||||||
|
liquid_material_name: str = "NMP",
|
||||||
|
speed: str = None,
|
||||||
|
temperature: str = None,
|
||||||
|
delay_time: str = None) -> str:
|
||||||
|
"""
|
||||||
|
批量创建二胺溶液配置任务
|
||||||
|
|
||||||
|
参数说明:
|
||||||
|
- solutions: 溶液列表(数组)或JSON字符串,格式如下:
|
||||||
|
[
|
||||||
|
{
|
||||||
|
"name": "MDA",
|
||||||
|
"order": 0,
|
||||||
|
"solid_mass": 5.0,
|
||||||
|
"solvent_volume": 20,
|
||||||
|
...
|
||||||
|
},
|
||||||
|
...
|
||||||
|
]
|
||||||
|
- liquid_material_name: 液体物料名称,默认为"NMP"
|
||||||
|
- speed: 搅拌速度,如果为None则使用默认值400
|
||||||
|
- temperature: 温度,如果为None则使用默认值20
|
||||||
|
- delay_time: 延迟时间,如果为None则使用默认值600
|
||||||
|
|
||||||
|
返回: JSON字符串格式的任务创建结果
|
||||||
|
|
||||||
|
异常:
|
||||||
|
- BioyondException: 各种错误情况下的统一异常
|
||||||
|
"""
|
||||||
|
try:
|
||||||
|
# 参数类型转换:如果是字符串则解析为列表
|
||||||
|
if isinstance(solutions, str):
|
||||||
|
try:
|
||||||
|
solutions = json.loads(solutions)
|
||||||
|
except json.JSONDecodeError as e:
|
||||||
|
raise BioyondException(f"solutions JSON解析失败: {str(e)}")
|
||||||
|
|
||||||
|
# 参数验证
|
||||||
|
if not isinstance(solutions, list):
|
||||||
|
raise BioyondException("solutions 必须是列表类型或有效的JSON数组字符串")
|
||||||
|
|
||||||
|
if not solutions:
|
||||||
|
raise BioyondException("solutions 列表不能为空")
|
||||||
|
|
||||||
|
# 批量创建任务
|
||||||
|
results = []
|
||||||
|
success_count = 0
|
||||||
|
failed_count = 0
|
||||||
|
|
||||||
|
for idx, solution in enumerate(solutions):
|
||||||
|
try:
|
||||||
|
# 提取参数
|
||||||
|
name = solution.get("name")
|
||||||
|
solid_mass = solution.get("solid_mass")
|
||||||
|
solvent_volume = solution.get("solvent_volume")
|
||||||
|
order = solution.get("order")
|
||||||
|
|
||||||
|
if not all([name, solid_mass is not None, solvent_volume is not None]):
|
||||||
|
self.hardware_interface._logger.warning(
|
||||||
|
f"跳过第 {idx + 1} 个溶液:缺少必要参数"
|
||||||
|
)
|
||||||
|
results.append({
|
||||||
|
"index": idx + 1,
|
||||||
|
"name": name,
|
||||||
|
"success": False,
|
||||||
|
"error": "缺少必要参数"
|
||||||
|
})
|
||||||
|
failed_count += 1
|
||||||
|
continue
|
||||||
|
|
||||||
|
# 生成库位名称(直接使用物料名称)
|
||||||
|
# 如果需要其他命名规则,可以在这里调整
|
||||||
|
hold_m_name = name
|
||||||
|
|
||||||
|
# 调用单个任务创建方法
|
||||||
|
result = self.create_diamine_solution_task(
|
||||||
|
order_name=f"二胺溶液配置-{name}",
|
||||||
|
material_name=name,
|
||||||
|
target_weigh=str(solid_mass),
|
||||||
|
volume=str(solvent_volume),
|
||||||
|
liquid_material_name=liquid_material_name,
|
||||||
|
speed=speed,
|
||||||
|
temperature=temperature,
|
||||||
|
delay_time=delay_time,
|
||||||
|
hold_m_name=hold_m_name
|
||||||
|
)
|
||||||
|
|
||||||
|
results.append({
|
||||||
|
"index": idx + 1,
|
||||||
|
"name": name,
|
||||||
|
"success": True,
|
||||||
|
"hold_m_name": hold_m_name
|
||||||
|
})
|
||||||
|
success_count += 1
|
||||||
|
self.hardware_interface._logger.info(
|
||||||
|
f"成功创建二胺溶液配置任务: {name}"
|
||||||
|
)
|
||||||
|
|
||||||
|
except BioyondException as e:
|
||||||
|
results.append({
|
||||||
|
"index": idx + 1,
|
||||||
|
"name": solution.get("name", "unknown"),
|
||||||
|
"success": False,
|
||||||
|
"error": str(e)
|
||||||
|
})
|
||||||
|
failed_count += 1
|
||||||
|
self.hardware_interface._logger.error(
|
||||||
|
f"创建第 {idx + 1} 个任务失败: {str(e)}"
|
||||||
|
)
|
||||||
|
except Exception as e:
|
||||||
|
results.append({
|
||||||
|
"index": idx + 1,
|
||||||
|
"name": solution.get("name", "unknown"),
|
||||||
|
"success": False,
|
||||||
|
"error": f"未知错误: {str(e)}"
|
||||||
|
})
|
||||||
|
failed_count += 1
|
||||||
|
self.hardware_interface._logger.error(
|
||||||
|
f"创建第 {idx + 1} 个任务时发生未知错误: {str(e)}"
|
||||||
|
)
|
||||||
|
|
||||||
|
# 返回汇总结果
|
||||||
|
summary = {
|
||||||
|
"total": len(solutions),
|
||||||
|
"success": success_count,
|
||||||
|
"failed": failed_count,
|
||||||
|
"details": results
|
||||||
|
}
|
||||||
|
|
||||||
|
self.hardware_interface._logger.info(
|
||||||
|
f"批量创建二胺溶液配置任务完成: 总数={len(solutions)}, "
|
||||||
|
f"成功={success_count}, 失败={failed_count}"
|
||||||
|
)
|
||||||
|
|
||||||
|
# 返回JSON字符串格式
|
||||||
|
return json.dumps(summary, ensure_ascii=False)
|
||||||
|
|
||||||
|
except BioyondException:
|
||||||
|
raise
|
||||||
|
except Exception as e:
|
||||||
|
error_msg = f"批量创建二胺溶液配置任务时发生未预期的错误: {str(e)}"
|
||||||
|
self.hardware_interface._logger.error(error_msg)
|
||||||
|
raise BioyondException(error_msg)
|
||||||
|
|
||||||
|
# 批量创建90%10%小瓶投料任务
|
||||||
|
def batch_create_90_10_vial_feeding_tasks(self,
|
||||||
|
titration,
|
||||||
|
hold_m_name: str = None,
|
||||||
|
speed: str = None,
|
||||||
|
temperature: str = None,
|
||||||
|
delay_time: str = None,
|
||||||
|
liquid_material_name: str = "NMP") -> str:
|
||||||
|
"""
|
||||||
|
批量创建90%10%小瓶投料任务(仅创建1个任务,但包含所有90%和10%物料)
|
||||||
|
|
||||||
|
参数说明:
|
||||||
|
- titration: 滴定信息的字典或JSON字符串,格式如下:
|
||||||
|
{
|
||||||
|
"name": "BTDA",
|
||||||
|
"main_portion": 1.9152351915461294, # 主称固体质量(g) -> 90%物料
|
||||||
|
"titration_portion": 0.05923407808905555, # 滴定固体质量(g) -> 10%物料固体
|
||||||
|
"titration_solvent": 3.050555021586361 # 滴定溶液体积(mL) -> 10%物料液体
|
||||||
|
}
|
||||||
|
- hold_m_name: 库位名称,如"C01"。必填参数
|
||||||
|
- speed: 搅拌速度,如果为None则使用默认值400
|
||||||
|
- temperature: 温度,如果为None则使用默认值40
|
||||||
|
- delay_time: 延迟时间,如果为None则使用默认值600
|
||||||
|
- liquid_material_name: 10%物料的液体物料名称,默认为"NMP"
|
||||||
|
|
||||||
|
返回: JSON字符串格式的任务创建结果
|
||||||
|
|
||||||
|
异常:
|
||||||
|
- BioyondException: 各种错误情况下的统一异常
|
||||||
|
"""
|
||||||
|
try:
|
||||||
|
# 参数类型转换:如果是字符串则解析为字典
|
||||||
|
if isinstance(titration, str):
|
||||||
|
try:
|
||||||
|
titration = json.loads(titration)
|
||||||
|
except json.JSONDecodeError as e:
|
||||||
|
raise BioyondException(f"titration参数JSON解析失败: {str(e)}")
|
||||||
|
|
||||||
|
# 参数验证
|
||||||
|
if not isinstance(titration, dict):
|
||||||
|
raise BioyondException("titration 必须是字典类型或有效的JSON字符串")
|
||||||
|
|
||||||
|
if not hold_m_name:
|
||||||
|
raise BioyondException("hold_m_name 是必填参数")
|
||||||
|
|
||||||
|
if not titration:
|
||||||
|
raise BioyondException("titration 参数不能为空")
|
||||||
|
|
||||||
|
# 提取滴定数据
|
||||||
|
name = titration.get("name")
|
||||||
|
main_portion = titration.get("main_portion") # 主称固体质量
|
||||||
|
titration_portion = titration.get("titration_portion") # 滴定固体质量
|
||||||
|
titration_solvent = titration.get("titration_solvent") # 滴定溶液体积
|
||||||
|
|
||||||
|
if not all([name, main_portion is not None, titration_portion is not None, titration_solvent is not None]):
|
||||||
|
raise BioyondException("titration 数据缺少必要参数")
|
||||||
|
|
||||||
|
# 将main_portion平均分成3份作为90%物料(3个小瓶)
|
||||||
|
portion_90 = main_portion / 3
|
||||||
|
|
||||||
|
# 调用单个任务创建方法
|
||||||
|
result = self.create_90_10_vial_feeding_task(
|
||||||
|
order_name=f"90%10%小瓶投料-{name}",
|
||||||
|
speed=speed,
|
||||||
|
temperature=temperature,
|
||||||
|
delay_time=delay_time,
|
||||||
|
# 90%物料 - 主称固体平均分成3份
|
||||||
|
percent_90_1_assign_material_name=name,
|
||||||
|
percent_90_1_target_weigh=str(round(portion_90, 6)),
|
||||||
|
percent_90_2_assign_material_name=name,
|
||||||
|
percent_90_2_target_weigh=str(round(portion_90, 6)),
|
||||||
|
percent_90_3_assign_material_name=name,
|
||||||
|
percent_90_3_target_weigh=str(round(portion_90, 6)),
|
||||||
|
# 10%物料 - 滴定固体 + 滴定溶剂(只使用第1个10%小瓶)
|
||||||
|
percent_10_1_assign_material_name=name,
|
||||||
|
percent_10_1_target_weigh=str(round(titration_portion, 6)),
|
||||||
|
percent_10_1_volume=str(round(titration_solvent, 6)),
|
||||||
|
percent_10_1_liquid_material_name=liquid_material_name,
|
||||||
|
hold_m_name=hold_m_name
|
||||||
|
)
|
||||||
|
|
||||||
|
summary = {
|
||||||
|
"success": True,
|
||||||
|
"hold_m_name": hold_m_name,
|
||||||
|
"material_name": name,
|
||||||
|
"90_vials": {
|
||||||
|
"count": 3,
|
||||||
|
"weight_per_vial": round(portion_90, 6),
|
||||||
|
"total_weight": round(main_portion, 6)
|
||||||
|
},
|
||||||
|
"10_vials": {
|
||||||
|
"count": 1,
|
||||||
|
"solid_weight": round(titration_portion, 6),
|
||||||
|
"liquid_volume": round(titration_solvent, 6)
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
self.hardware_interface._logger.info(
|
||||||
|
f"成功创建90%10%小瓶投料任务: {hold_m_name}, "
|
||||||
|
f"90%物料={portion_90:.6f}g×3, 10%物料={titration_portion:.6f}g+{titration_solvent:.6f}mL"
|
||||||
|
)
|
||||||
|
|
||||||
|
# 返回JSON字符串格式
|
||||||
|
return json.dumps(summary, ensure_ascii=False)
|
||||||
|
|
||||||
|
except BioyondException:
|
||||||
|
raise
|
||||||
|
except Exception as e:
|
||||||
|
error_msg = f"批量创建90%10%小瓶投料任务时发生未预期的错误: {str(e)}"
|
||||||
|
self.hardware_interface._logger.error(error_msg)
|
||||||
|
raise BioyondException(error_msg)
|
||||||
|
|
||||||
|
|
||||||
if __name__ == "__main__":
|
if __name__ == "__main__":
|
||||||
bioyond = BioyondDispensingStation(config={
|
bioyond = BioyondDispensingStation(config={
|
||||||
"api_key": "DE9BDDA0",
|
"api_key": "DE9BDDA0",
|
||||||
"api_host": "http://192.168.1.200:44388"
|
"api_host": "http://192.168.1.200:44388"
|
||||||
})
|
})
|
||||||
|
|
||||||
|
# ============ 原有示例代码 ============
|
||||||
|
|
||||||
# 示例1:使用material_id_query查询工作流对应的holdMID
|
# 示例1:使用material_id_query查询工作流对应的holdMID
|
||||||
workflow_id_1 = "3a15d4a1-3bbe-76f9-a458-292896a338f5" # 二胺溶液配置工作流ID
|
workflow_id_1 = "3a15d4a1-3bbe-76f9-a458-292896a338f5" # 二胺溶液配置工作流ID
|
||||||
workflow_id_2 = "3a19310d-16b9-9d81-b109-0748e953694b" # 90%10%小瓶投料工作流ID
|
workflow_id_2 = "3a19310d-16b9-9d81-b109-0748e953694b" # 90%10%小瓶投料工作流ID
|
||||||
|
|
||||||
#示例2:创建二胺溶液配置任务 - ODA,指定库位名称
|
#示例2:创建二胺溶液配置任务 - ODA,指定库位名称
|
||||||
# bioyond.create_diamine_solution_task(
|
# bioyond.create_diamine_solution_task(
|
||||||
# order_code="task_oda_" + str(int(datetime.now().timestamp())),
|
# order_code="task_oda_" + str(int(datetime.now().timestamp())),
|
||||||
@@ -433,7 +694,7 @@ if __name__ == "__main__":
|
|||||||
# delay_time="600",
|
# delay_time="600",
|
||||||
# hold_m_name="烧杯ODA"
|
# hold_m_name="烧杯ODA"
|
||||||
# )
|
# )
|
||||||
|
|
||||||
# bioyond.create_diamine_solution_task(
|
# bioyond.create_diamine_solution_task(
|
||||||
# order_code="task_pda_" + str(int(datetime.now().timestamp())),
|
# order_code="task_pda_" + str(int(datetime.now().timestamp())),
|
||||||
# order_name="二胺溶液配置-PDA",
|
# order_name="二胺溶液配置-PDA",
|
||||||
@@ -446,7 +707,7 @@ if __name__ == "__main__":
|
|||||||
# delay_time="600",
|
# delay_time="600",
|
||||||
# hold_m_name="烧杯PDA-2"
|
# hold_m_name="烧杯PDA-2"
|
||||||
# )
|
# )
|
||||||
|
|
||||||
# bioyond.create_diamine_solution_task(
|
# bioyond.create_diamine_solution_task(
|
||||||
# order_code="task_mpda_" + str(int(datetime.now().timestamp())),
|
# order_code="task_mpda_" + str(int(datetime.now().timestamp())),
|
||||||
# order_name="二胺溶液配置-MPDA",
|
# order_name="二胺溶液配置-MPDA",
|
||||||
@@ -462,8 +723,8 @@ if __name__ == "__main__":
|
|||||||
|
|
||||||
bioyond.material_id_query("3a19310d-16b9-9d81-b109-0748e953694b")
|
bioyond.material_id_query("3a19310d-16b9-9d81-b109-0748e953694b")
|
||||||
bioyond.material_id_query("3a15d4a1-3bbe-76f9-a458-292896a338f5")
|
bioyond.material_id_query("3a15d4a1-3bbe-76f9-a458-292896a338f5")
|
||||||
|
|
||||||
|
|
||||||
#示例4:创建90%10%小瓶投料任务
|
#示例4:创建90%10%小瓶投料任务
|
||||||
# vial_result = bioyond.create_90_10_vial_feeding_task(
|
# vial_result = bioyond.create_90_10_vial_feeding_task(
|
||||||
# order_code="task_vial_" + str(int(datetime.now().timestamp())),
|
# order_code="task_vial_" + str(int(datetime.now().timestamp())),
|
||||||
@@ -487,7 +748,7 @@ if __name__ == "__main__":
|
|||||||
# delay_time="1200",
|
# delay_time="1200",
|
||||||
# hold_m_name="8.4分装板-1"
|
# hold_m_name="8.4分装板-1"
|
||||||
# )
|
# )
|
||||||
|
|
||||||
# vial_result = bioyond.create_90_10_vial_feeding_task(
|
# vial_result = bioyond.create_90_10_vial_feeding_task(
|
||||||
# order_code="task_vial_" + str(int(datetime.now().timestamp())),
|
# order_code="task_vial_" + str(int(datetime.now().timestamp())),
|
||||||
# order_name="90%10%小瓶投料-2",
|
# order_name="90%10%小瓶投料-2",
|
||||||
@@ -510,7 +771,7 @@ if __name__ == "__main__":
|
|||||||
# delay_time="1200",
|
# delay_time="1200",
|
||||||
# hold_m_name="8.4分装板-2"
|
# hold_m_name="8.4分装板-2"
|
||||||
# )
|
# )
|
||||||
|
|
||||||
#启动调度器
|
#启动调度器
|
||||||
#bioyond.scheduler_start()
|
#bioyond.scheduler_start()
|
||||||
|
|
||||||
@@ -529,7 +790,7 @@ if __name__ == "__main__":
|
|||||||
material_data_yp = {
|
material_data_yp = {
|
||||||
"typeId": "3a14196e-b7a0-a5da-1931-35f3000281e9",
|
"typeId": "3a14196e-b7a0-a5da-1931-35f3000281e9",
|
||||||
#"code": "物料编码001",
|
#"code": "物料编码001",
|
||||||
#"barCode": "物料条码001",
|
#"barCode": "物料条码001",
|
||||||
"name": "8.4样品板",
|
"name": "8.4样品板",
|
||||||
"unit": "个",
|
"unit": "个",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
@@ -540,7 +801,7 @@ if __name__ == "__main__":
|
|||||||
"name": "BTDA-1",
|
"name": "BTDA-1",
|
||||||
"quantity": 20,
|
"quantity": 20,
|
||||||
"x": 1,
|
"x": 1,
|
||||||
"y": 1,
|
"y": 1,
|
||||||
#"unit": "单位"
|
#"unit": "单位"
|
||||||
"molecular": 1,
|
"molecular": 1,
|
||||||
"Parameters":"{\"molecular\": 1}"
|
"Parameters":"{\"molecular\": 1}"
|
||||||
@@ -585,7 +846,7 @@ if __name__ == "__main__":
|
|||||||
material_data_yp = {
|
material_data_yp = {
|
||||||
"typeId": "3a14196e-b7a0-a5da-1931-35f3000281e9",
|
"typeId": "3a14196e-b7a0-a5da-1931-35f3000281e9",
|
||||||
#"code": "物料编码001",
|
#"code": "物料编码001",
|
||||||
#"barCode": "物料条码001",
|
#"barCode": "物料条码001",
|
||||||
"name": "8.7样品板",
|
"name": "8.7样品板",
|
||||||
"unit": "个",
|
"unit": "个",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
@@ -596,7 +857,7 @@ if __name__ == "__main__":
|
|||||||
"name": "mianfen",
|
"name": "mianfen",
|
||||||
"quantity": 13,
|
"quantity": 13,
|
||||||
"x": 1,
|
"x": 1,
|
||||||
"y": 1,
|
"y": 1,
|
||||||
#"unit": "单位"
|
#"unit": "单位"
|
||||||
"molecular": 1,
|
"molecular": 1,
|
||||||
"Parameters":"{\"molecular\": 1}"
|
"Parameters":"{\"molecular\": 1}"
|
||||||
@@ -620,7 +881,7 @@ if __name__ == "__main__":
|
|||||||
material_data_fzb_1 = {
|
material_data_fzb_1 = {
|
||||||
"typeId": "3a14196e-5dfe-6e21-0c79-fe2036d052c4",
|
"typeId": "3a14196e-5dfe-6e21-0c79-fe2036d052c4",
|
||||||
#"code": "物料编码001",
|
#"code": "物料编码001",
|
||||||
#"barCode": "物料条码001",
|
#"barCode": "物料条码001",
|
||||||
"name": "8.7分装板",
|
"name": "8.7分装板",
|
||||||
"unit": "个",
|
"unit": "个",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
@@ -631,7 +892,7 @@ if __name__ == "__main__":
|
|||||||
"name": "10%小瓶1",
|
"name": "10%小瓶1",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
"x": 1,
|
"x": 1,
|
||||||
"y": 1,
|
"y": 1,
|
||||||
#"unit": "单位"
|
#"unit": "单位"
|
||||||
"molecular": 1,
|
"molecular": 1,
|
||||||
"Parameters":"{\"molecular\": 1}"
|
"Parameters":"{\"molecular\": 1}"
|
||||||
@@ -642,7 +903,7 @@ if __name__ == "__main__":
|
|||||||
"name": "10%小瓶2",
|
"name": "10%小瓶2",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
"x": 1,
|
"x": 1,
|
||||||
"y": 2,
|
"y": 2,
|
||||||
#"unit": "单位"
|
#"unit": "单位"
|
||||||
"molecular": 1,
|
"molecular": 1,
|
||||||
"Parameters":"{\"molecular\": 1}"
|
"Parameters":"{\"molecular\": 1}"
|
||||||
@@ -653,7 +914,7 @@ if __name__ == "__main__":
|
|||||||
"name": "10%小瓶3",
|
"name": "10%小瓶3",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
"x": 1,
|
"x": 1,
|
||||||
"y": 3,
|
"y": 3,
|
||||||
#"unit": "单位"
|
#"unit": "单位"
|
||||||
"molecular": 1,
|
"molecular": 1,
|
||||||
"Parameters":"{\"molecular\": 1}"
|
"Parameters":"{\"molecular\": 1}"
|
||||||
@@ -697,7 +958,7 @@ if __name__ == "__main__":
|
|||||||
material_data_fzb_2 = {
|
material_data_fzb_2 = {
|
||||||
"typeId": "3a14196e-5dfe-6e21-0c79-fe2036d052c4",
|
"typeId": "3a14196e-5dfe-6e21-0c79-fe2036d052c4",
|
||||||
#"code": "物料编码001",
|
#"code": "物料编码001",
|
||||||
#"barCode": "物料条码001",
|
#"barCode": "物料条码001",
|
||||||
"name": "8.4分装板-2",
|
"name": "8.4分装板-2",
|
||||||
"unit": "个",
|
"unit": "个",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
@@ -708,7 +969,7 @@ if __name__ == "__main__":
|
|||||||
"name": "10%小瓶1",
|
"name": "10%小瓶1",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
"x": 1,
|
"x": 1,
|
||||||
"y": 1,
|
"y": 1,
|
||||||
#"unit": "单位"
|
#"unit": "单位"
|
||||||
"molecular": 1,
|
"molecular": 1,
|
||||||
"Parameters":"{\"molecular\": 1}"
|
"Parameters":"{\"molecular\": 1}"
|
||||||
@@ -719,7 +980,7 @@ if __name__ == "__main__":
|
|||||||
"name": "10%小瓶2",
|
"name": "10%小瓶2",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
"x": 1,
|
"x": 1,
|
||||||
"y": 2,
|
"y": 2,
|
||||||
#"unit": "单位"
|
#"unit": "单位"
|
||||||
"molecular": 1,
|
"molecular": 1,
|
||||||
"Parameters":"{\"molecular\": 1}"
|
"Parameters":"{\"molecular\": 1}"
|
||||||
@@ -730,7 +991,7 @@ if __name__ == "__main__":
|
|||||||
"name": "10%小瓶3",
|
"name": "10%小瓶3",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
"x": 1,
|
"x": 1,
|
||||||
"y": 3,
|
"y": 3,
|
||||||
#"unit": "单位"
|
#"unit": "单位"
|
||||||
"molecular": 1,
|
"molecular": 1,
|
||||||
"Parameters":"{\"molecular\": 1}"
|
"Parameters":"{\"molecular\": 1}"
|
||||||
@@ -775,7 +1036,7 @@ if __name__ == "__main__":
|
|||||||
material_data_sb_oda = {
|
material_data_sb_oda = {
|
||||||
"typeId": "3a14196b-24f2-ca49-9081-0cab8021bf1a",
|
"typeId": "3a14196b-24f2-ca49-9081-0cab8021bf1a",
|
||||||
#"code": "物料编码001",
|
#"code": "物料编码001",
|
||||||
#"barCode": "物料条码001",
|
#"barCode": "物料条码001",
|
||||||
"name": "mianfen1",
|
"name": "mianfen1",
|
||||||
"unit": "个",
|
"unit": "个",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
@@ -785,7 +1046,7 @@ if __name__ == "__main__":
|
|||||||
material_data_sb_pda_2 = {
|
material_data_sb_pda_2 = {
|
||||||
"typeId": "3a14196b-24f2-ca49-9081-0cab8021bf1a",
|
"typeId": "3a14196b-24f2-ca49-9081-0cab8021bf1a",
|
||||||
#"code": "物料编码001",
|
#"code": "物料编码001",
|
||||||
#"barCode": "物料条码001",
|
#"barCode": "物料条码001",
|
||||||
"name": "mianfen2",
|
"name": "mianfen2",
|
||||||
"unit": "个",
|
"unit": "个",
|
||||||
"quantity": 1,
|
"quantity": 1,
|
||||||
@@ -795,7 +1056,7 @@ if __name__ == "__main__":
|
|||||||
# material_data_sb_mpda = {
|
# material_data_sb_mpda = {
|
||||||
# "typeId": "3a14196b-24f2-ca49-9081-0cab8021bf1a",
|
# "typeId": "3a14196b-24f2-ca49-9081-0cab8021bf1a",
|
||||||
# #"code": "物料编码001",
|
# #"code": "物料编码001",
|
||||||
# #"barCode": "物料条码001",
|
# #"barCode": "物料条码001",
|
||||||
# "name": "烧杯MPDA",
|
# "name": "烧杯MPDA",
|
||||||
# "unit": "个",
|
# "unit": "个",
|
||||||
# "quantity": 1,
|
# "quantity": 1,
|
||||||
|
|||||||
@@ -58,8 +58,8 @@ class BioyondReactionStation(BioyondWorkstation):
|
|||||||
|
|
||||||
Args:
|
Args:
|
||||||
assign_material_name: 物料名称(不能为空)
|
assign_material_name: 物料名称(不能为空)
|
||||||
cutoff: 截止值/通量配置(需为有效数字字符串,默认 "900000")
|
cutoff: 粘度上限(需为有效数字字符串,默认 "900000")
|
||||||
temperature: 温度上限(°C,范围:-50.00 至 100.00)
|
temperature: 温度设定(°C,范围:-50.00 至 100.00)
|
||||||
|
|
||||||
Returns:
|
Returns:
|
||||||
str: JSON 字符串,格式为 {"suc": True}
|
str: JSON 字符串,格式为 {"suc": True}
|
||||||
@@ -113,11 +113,11 @@ class BioyondReactionStation(BioyondWorkstation):
|
|||||||
"""固体进料小瓶
|
"""固体进料小瓶
|
||||||
|
|
||||||
Args:
|
Args:
|
||||||
material_id: 粉末类型ID
|
material_id: 粉末类型ID,1=盐(21分钟),2=面粉(27分钟),3=BTDA(38分钟)
|
||||||
time: 观察时间(分钟)
|
time: 观察时间(分钟)
|
||||||
torque_variation: 是否观察扭矩变化(int类型, 1=否, 2=是)
|
torque_variation: 是否观察(int类型, 1=否, 2=是)
|
||||||
assign_material_name: 物料名称(用于获取试剂瓶位ID)
|
assign_material_name: 物料名称(用于获取试剂瓶位ID)
|
||||||
temperature: 温度上限(°C)
|
temperature: 温度设定(°C)
|
||||||
"""
|
"""
|
||||||
self.append_to_workflow_sequence('{"web_workflow_name": "Solid_feeding_vials"}')
|
self.append_to_workflow_sequence('{"web_workflow_name": "Solid_feeding_vials"}')
|
||||||
material_id_m = self.hardware_interface._get_material_id_by_name(assign_material_name) if assign_material_name else None
|
material_id_m = self.hardware_interface._get_material_id_by_name(assign_material_name) if assign_material_name else None
|
||||||
@@ -165,9 +165,9 @@ class BioyondReactionStation(BioyondWorkstation):
|
|||||||
Args:
|
Args:
|
||||||
volume_formula: 分液公式(μL)
|
volume_formula: 分液公式(μL)
|
||||||
assign_material_name: 物料名称
|
assign_material_name: 物料名称
|
||||||
titration_type: 是否滴定(1=滴定, 其他=非滴定)
|
titration_type: 是否滴定(1=否, 2=是)
|
||||||
time: 观察时间(分钟)
|
time: 观察时间(分钟)
|
||||||
torque_variation: 是否观察扭矩变化(int类型, 1=否, 2=是)
|
torque_variation: 是否观察(int类型, 1=否, 2=是)
|
||||||
temperature: 温度(°C)
|
temperature: 温度(°C)
|
||||||
"""
|
"""
|
||||||
self.append_to_workflow_sequence('{"web_workflow_name": "Liquid_feeding_vials(non-titration)"}')
|
self.append_to_workflow_sequence('{"web_workflow_name": "Liquid_feeding_vials(non-titration)"}')
|
||||||
@@ -208,7 +208,8 @@ class BioyondReactionStation(BioyondWorkstation):
|
|||||||
def liquid_feeding_solvents(
|
def liquid_feeding_solvents(
|
||||||
self,
|
self,
|
||||||
assign_material_name: str,
|
assign_material_name: str,
|
||||||
volume: str,
|
volume: str = None,
|
||||||
|
solvents = None,
|
||||||
titration_type: str = "1",
|
titration_type: str = "1",
|
||||||
time: str = "360",
|
time: str = "360",
|
||||||
torque_variation: int = 2,
|
torque_variation: int = 2,
|
||||||
@@ -218,12 +219,41 @@ class BioyondReactionStation(BioyondWorkstation):
|
|||||||
|
|
||||||
Args:
|
Args:
|
||||||
assign_material_name: 物料名称
|
assign_material_name: 物料名称
|
||||||
volume: 分液量(μL)
|
volume: 分液量(μL),直接指定体积(可选,如果提供solvents则自动计算)
|
||||||
titration_type: 是否滴定
|
solvents: 溶剂信息的字典或JSON字符串(可选),格式如下:
|
||||||
|
{
|
||||||
|
"additional_solvent": 33.55092503597727, # 溶剂体积(mL)
|
||||||
|
"total_liquid_volume": 48.00916988195499
|
||||||
|
}
|
||||||
|
如果提供solvents,则从中提取additional_solvent并转换为μL
|
||||||
|
titration_type: 是否滴定(1=否, 2=是)
|
||||||
time: 观察时间(分钟)
|
time: 观察时间(分钟)
|
||||||
torque_variation: 是否观察扭矩变化(int类型, 1=否, 2=是)
|
torque_variation: 是否观察(int类型, 1=否, 2=是)
|
||||||
temperature: 温度上限(°C)
|
temperature: 温度设定(°C)
|
||||||
"""
|
"""
|
||||||
|
# 处理 volume 参数:优先使用直接传入的 volume,否则从 solvents 中提取
|
||||||
|
if volume is None and solvents is not None:
|
||||||
|
# 参数类型转换:如果是字符串则解析为字典
|
||||||
|
if isinstance(solvents, str):
|
||||||
|
try:
|
||||||
|
solvents = json.loads(solvents)
|
||||||
|
except json.JSONDecodeError as e:
|
||||||
|
raise ValueError(f"solvents参数JSON解析失败: {str(e)}")
|
||||||
|
|
||||||
|
# 参数验证
|
||||||
|
if not isinstance(solvents, dict):
|
||||||
|
raise ValueError("solvents 必须是字典类型或有效的JSON字符串")
|
||||||
|
|
||||||
|
# 提取 additional_solvent 值
|
||||||
|
additional_solvent = solvents.get("additional_solvent")
|
||||||
|
if additional_solvent is None:
|
||||||
|
raise ValueError("solvents 中没有找到 additional_solvent 字段")
|
||||||
|
|
||||||
|
# 转换为微升(μL) - 从毫升(mL)转换
|
||||||
|
volume = str(float(additional_solvent) * 1000)
|
||||||
|
elif volume is None:
|
||||||
|
raise ValueError("必须提供 volume 或 solvents 参数之一")
|
||||||
|
|
||||||
self.append_to_workflow_sequence('{"web_workflow_name": "Liquid_feeding_solvents"}')
|
self.append_to_workflow_sequence('{"web_workflow_name": "Liquid_feeding_solvents"}')
|
||||||
material_id = self.hardware_interface._get_material_id_by_name(assign_material_name)
|
material_id = self.hardware_interface._get_material_id_by_name(assign_material_name)
|
||||||
if material_id is None:
|
if material_id is None:
|
||||||
@@ -273,9 +303,9 @@ class BioyondReactionStation(BioyondWorkstation):
|
|||||||
Args:
|
Args:
|
||||||
volume_formula: 分液公式(μL)
|
volume_formula: 分液公式(μL)
|
||||||
assign_material_name: 物料名称
|
assign_material_name: 物料名称
|
||||||
titration_type: 是否滴定
|
titration_type: 是否滴定(1=否, 2=是)
|
||||||
time: 观察时间(分钟)
|
time: 观察时间(分钟)
|
||||||
torque_variation: 是否观察扭矩变化(int类型, 1=否, 2=是)
|
torque_variation: 是否观察(int类型, 1=否, 2=是)
|
||||||
temperature: 温度(°C)
|
temperature: 温度(°C)
|
||||||
"""
|
"""
|
||||||
self.append_to_workflow_sequence('{"web_workflow_name": "Liquid_feeding(titration)"}')
|
self.append_to_workflow_sequence('{"web_workflow_name": "Liquid_feeding(titration)"}')
|
||||||
@@ -328,9 +358,9 @@ class BioyondReactionStation(BioyondWorkstation):
|
|||||||
volume: 分液量(μL)
|
volume: 分液量(μL)
|
||||||
assign_material_name: 物料名称(试剂瓶位)
|
assign_material_name: 物料名称(试剂瓶位)
|
||||||
time: 观察时间(分钟)
|
time: 观察时间(分钟)
|
||||||
torque_variation: 是否观察扭矩变化(int类型, 1=否, 2=是)
|
torque_variation: 是否观察(int类型, 1=否, 2=是)
|
||||||
titration_type: 是否滴定
|
titration_type: 是否滴定(1=否, 2=是)
|
||||||
temperature: 温度上限(°C)
|
temperature: 温度设定(°C)
|
||||||
"""
|
"""
|
||||||
self.append_to_workflow_sequence('{"web_workflow_name": "liquid_feeding_beaker"}')
|
self.append_to_workflow_sequence('{"web_workflow_name": "liquid_feeding_beaker"}')
|
||||||
material_id = self.hardware_interface._get_material_id_by_name(assign_material_name)
|
material_id = self.hardware_interface._get_material_id_by_name(assign_material_name)
|
||||||
@@ -381,9 +411,9 @@ class BioyondReactionStation(BioyondWorkstation):
|
|||||||
Args:
|
Args:
|
||||||
assign_material_name: 物料名称(液体种类)
|
assign_material_name: 物料名称(液体种类)
|
||||||
volume: 分液量(μL)
|
volume: 分液量(μL)
|
||||||
titration_type: 是否滴定
|
titration_type: 是否滴定(1=否, 2=是)
|
||||||
time: 观察时间(分钟)
|
time: 观察时间(分钟)
|
||||||
torque_variation: 是否观察扭矩变化(int类型, 1=否, 2=是)
|
torque_variation: 是否观察(int类型, 1=否, 2=是)
|
||||||
temperature: 温度(°C)
|
temperature: 温度(°C)
|
||||||
"""
|
"""
|
||||||
self.append_to_workflow_sequence('{"web_workflow_name": "drip_back"}')
|
self.append_to_workflow_sequence('{"web_workflow_name": "drip_back"}')
|
||||||
@@ -605,7 +635,8 @@ class BioyondReactionStation(BioyondWorkstation):
|
|||||||
total_params += 1
|
total_params += 1
|
||||||
step_parameters[step_id][action_name].append({
|
step_parameters[step_id][action_name].append({
|
||||||
"Key": param_key,
|
"Key": param_key,
|
||||||
"DisplayValue": param_value
|
"DisplayValue": param_value,
|
||||||
|
"Value": param_value
|
||||||
})
|
})
|
||||||
successful_params += 1
|
successful_params += 1
|
||||||
# print(f" ✓ {param_key} = {param_value}")
|
# print(f" ✓ {param_key} = {param_value}")
|
||||||
|
|||||||
@@ -4,6 +4,7 @@ Bioyond Workstation Implementation
|
|||||||
|
|
||||||
集成Bioyond物料管理的工作站示例
|
集成Bioyond物料管理的工作站示例
|
||||||
"""
|
"""
|
||||||
|
import time
|
||||||
import traceback
|
import traceback
|
||||||
from datetime import datetime
|
from datetime import datetime
|
||||||
from typing import Dict, Any, List, Optional, Union
|
from typing import Dict, Any, List, Optional, Union
|
||||||
|
|||||||
404
unilabos/registry/devices/bioyond_dispensing_station.yaml
Normal file
404
unilabos/registry/devices/bioyond_dispensing_station.yaml
Normal file
@@ -0,0 +1,404 @@
|
|||||||
|
bioyond_dispensing_station:
|
||||||
|
category:
|
||||||
|
- workstation
|
||||||
|
- bioyond
|
||||||
|
- bioyond_dispensing_station
|
||||||
|
class:
|
||||||
|
action_value_mappings:
|
||||||
|
batch_create_90_10_vial_feeding_tasks:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
delay_time: delay_time
|
||||||
|
hold_m_name: hold_m_name
|
||||||
|
liquid_material_name: liquid_material_name
|
||||||
|
speed: speed
|
||||||
|
temperature: temperature
|
||||||
|
titration: titration
|
||||||
|
goal_default:
|
||||||
|
delay_time: '600'
|
||||||
|
hold_m_name: ''
|
||||||
|
liquid_material_name: NMP
|
||||||
|
speed: '400'
|
||||||
|
temperature: '40'
|
||||||
|
titration: ''
|
||||||
|
handles:
|
||||||
|
input:
|
||||||
|
- data_key: titration
|
||||||
|
data_source: handle
|
||||||
|
data_type: object
|
||||||
|
handler_key: titration
|
||||||
|
io_type: source
|
||||||
|
label: Titration Data From Calculation Node
|
||||||
|
result:
|
||||||
|
return_info: return_info
|
||||||
|
schema:
|
||||||
|
description: 批量创建90%10%小瓶投料任务。从计算节点接收titration数据,包含物料名称、主称固体质量、滴定固体质量和滴定溶剂体积。
|
||||||
|
properties:
|
||||||
|
feedback:
|
||||||
|
properties: {}
|
||||||
|
required: []
|
||||||
|
title: BatchCreate9010VialFeedingTasks_Feedback
|
||||||
|
type: object
|
||||||
|
goal:
|
||||||
|
properties:
|
||||||
|
delay_time:
|
||||||
|
default: '600'
|
||||||
|
description: 延迟时间(秒),默认600
|
||||||
|
type: string
|
||||||
|
hold_m_name:
|
||||||
|
description: 库位名称,如"C01",必填参数
|
||||||
|
type: string
|
||||||
|
liquid_material_name:
|
||||||
|
default: NMP
|
||||||
|
description: 10%物料的液体物料名称,默认为"NMP"
|
||||||
|
type: string
|
||||||
|
speed:
|
||||||
|
default: '400'
|
||||||
|
description: 搅拌速度,默认400
|
||||||
|
type: string
|
||||||
|
temperature:
|
||||||
|
default: '40'
|
||||||
|
description: 温度(℃),默认40
|
||||||
|
type: string
|
||||||
|
titration:
|
||||||
|
description: '滴定信息对象,包含: name(物料名称), main_portion(主称固体质量g), titration_portion(滴定固体质量g),
|
||||||
|
titration_solvent(滴定溶液体积mL)'
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- titration
|
||||||
|
- hold_m_name
|
||||||
|
title: BatchCreate9010VialFeedingTasks_Goal
|
||||||
|
type: object
|
||||||
|
result:
|
||||||
|
properties:
|
||||||
|
return_info:
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- return_info
|
||||||
|
title: BatchCreate9010VialFeedingTasks_Result
|
||||||
|
type: object
|
||||||
|
required:
|
||||||
|
- goal
|
||||||
|
title: BatchCreate9010VialFeedingTasks
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommand
|
||||||
|
batch_create_diamine_solution_tasks:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
delay_time: delay_time
|
||||||
|
liquid_material_name: liquid_material_name
|
||||||
|
solutions: solutions
|
||||||
|
speed: speed
|
||||||
|
temperature: temperature
|
||||||
|
goal_default:
|
||||||
|
delay_time: '600'
|
||||||
|
liquid_material_name: NMP
|
||||||
|
solutions: ''
|
||||||
|
speed: '400'
|
||||||
|
temperature: '20'
|
||||||
|
handles:
|
||||||
|
input:
|
||||||
|
- data_key: solutions
|
||||||
|
data_source: handle
|
||||||
|
data_type: array
|
||||||
|
handler_key: solutions
|
||||||
|
io_type: source
|
||||||
|
label: Solution Data From Python
|
||||||
|
result:
|
||||||
|
return_info: return_info
|
||||||
|
schema:
|
||||||
|
description: 批量创建二胺溶液配置任务。自动为多个二胺样品创建溶液配置任务,每个任务包含固体物料称量、溶剂添加、搅拌混合等步骤。
|
||||||
|
properties:
|
||||||
|
feedback:
|
||||||
|
properties: {}
|
||||||
|
required: []
|
||||||
|
title: BatchCreateDiamineSolutionTasks_Feedback
|
||||||
|
type: object
|
||||||
|
goal:
|
||||||
|
properties:
|
||||||
|
delay_time:
|
||||||
|
default: '600'
|
||||||
|
description: 溶液配置完成后的延迟时间(秒),用于充分混合和溶解,默认600秒
|
||||||
|
type: string
|
||||||
|
liquid_material_name:
|
||||||
|
default: NMP
|
||||||
|
description: 液体溶剂名称,用于溶解固体物料,默认为NMP(N-甲基吡咯烷酮)
|
||||||
|
type: string
|
||||||
|
solutions:
|
||||||
|
description: '溶液列表,JSON数组格式,每个元素包含: name(物料名称), order(序号), solid_mass(固体质量g),
|
||||||
|
solvent_volume(溶剂体积mL)。示例: [{"name": "MDA", "order": 0, "solid_mass":
|
||||||
|
5.0, "solvent_volume": 20}, {"name": "MPDA", "order": 1, "solid_mass":
|
||||||
|
4.5, "solvent_volume": 18}]'
|
||||||
|
type: string
|
||||||
|
speed:
|
||||||
|
default: '400'
|
||||||
|
description: 搅拌速度(rpm),用于混合溶液,默认400转/分钟
|
||||||
|
type: string
|
||||||
|
temperature:
|
||||||
|
default: '20'
|
||||||
|
description: 配置温度(℃),溶液配置过程的目标温度,默认20℃(室温)
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- solutions
|
||||||
|
title: BatchCreateDiamineSolutionTasks_Goal
|
||||||
|
type: object
|
||||||
|
result:
|
||||||
|
properties:
|
||||||
|
return_info:
|
||||||
|
description: 批量任务创建结果汇总,JSON格式包含总数、成功数、失败数及每个任务的详细信息
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- return_info
|
||||||
|
title: BatchCreateDiamineSolutionTasks_Result
|
||||||
|
type: object
|
||||||
|
required:
|
||||||
|
- goal
|
||||||
|
title: BatchCreateDiamineSolutionTasks
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommand
|
||||||
|
create_90_10_vial_feeding_task:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
delay_time: delay_time
|
||||||
|
hold_m_name: hold_m_name
|
||||||
|
order_name: order_name
|
||||||
|
percent_10_1_assign_material_name: percent_10_1_assign_material_name
|
||||||
|
percent_10_1_liquid_material_name: percent_10_1_liquid_material_name
|
||||||
|
percent_10_1_target_weigh: percent_10_1_target_weigh
|
||||||
|
percent_10_1_volume: percent_10_1_volume
|
||||||
|
percent_10_2_assign_material_name: percent_10_2_assign_material_name
|
||||||
|
percent_10_2_liquid_material_name: percent_10_2_liquid_material_name
|
||||||
|
percent_10_2_target_weigh: percent_10_2_target_weigh
|
||||||
|
percent_10_2_volume: percent_10_2_volume
|
||||||
|
percent_10_3_assign_material_name: percent_10_3_assign_material_name
|
||||||
|
percent_10_3_liquid_material_name: percent_10_3_liquid_material_name
|
||||||
|
percent_10_3_target_weigh: percent_10_3_target_weigh
|
||||||
|
percent_10_3_volume: percent_10_3_volume
|
||||||
|
percent_90_1_assign_material_name: percent_90_1_assign_material_name
|
||||||
|
percent_90_1_target_weigh: percent_90_1_target_weigh
|
||||||
|
percent_90_2_assign_material_name: percent_90_2_assign_material_name
|
||||||
|
percent_90_2_target_weigh: percent_90_2_target_weigh
|
||||||
|
percent_90_3_assign_material_name: percent_90_3_assign_material_name
|
||||||
|
percent_90_3_target_weigh: percent_90_3_target_weigh
|
||||||
|
speed: speed
|
||||||
|
temperature: temperature
|
||||||
|
goal_default:
|
||||||
|
delay_time: ''
|
||||||
|
hold_m_name: ''
|
||||||
|
order_name: ''
|
||||||
|
percent_10_1_assign_material_name: ''
|
||||||
|
percent_10_1_liquid_material_name: ''
|
||||||
|
percent_10_1_target_weigh: ''
|
||||||
|
percent_10_1_volume: ''
|
||||||
|
percent_10_2_assign_material_name: ''
|
||||||
|
percent_10_2_liquid_material_name: ''
|
||||||
|
percent_10_2_target_weigh: ''
|
||||||
|
percent_10_2_volume: ''
|
||||||
|
percent_10_3_assign_material_name: ''
|
||||||
|
percent_10_3_liquid_material_name: ''
|
||||||
|
percent_10_3_target_weigh: ''
|
||||||
|
percent_10_3_volume: ''
|
||||||
|
percent_90_1_assign_material_name: ''
|
||||||
|
percent_90_1_target_weigh: ''
|
||||||
|
percent_90_2_assign_material_name: ''
|
||||||
|
percent_90_2_target_weigh: ''
|
||||||
|
percent_90_3_assign_material_name: ''
|
||||||
|
percent_90_3_target_weigh: ''
|
||||||
|
speed: ''
|
||||||
|
temperature: ''
|
||||||
|
handles: {}
|
||||||
|
result:
|
||||||
|
return_info: return_info
|
||||||
|
schema:
|
||||||
|
description: ''
|
||||||
|
properties:
|
||||||
|
feedback:
|
||||||
|
properties: {}
|
||||||
|
required: []
|
||||||
|
title: DispenStationVialFeed_Feedback
|
||||||
|
type: object
|
||||||
|
goal:
|
||||||
|
properties:
|
||||||
|
delay_time:
|
||||||
|
type: string
|
||||||
|
hold_m_name:
|
||||||
|
type: string
|
||||||
|
order_name:
|
||||||
|
type: string
|
||||||
|
percent_10_1_assign_material_name:
|
||||||
|
type: string
|
||||||
|
percent_10_1_liquid_material_name:
|
||||||
|
type: string
|
||||||
|
percent_10_1_target_weigh:
|
||||||
|
type: string
|
||||||
|
percent_10_1_volume:
|
||||||
|
type: string
|
||||||
|
percent_10_2_assign_material_name:
|
||||||
|
type: string
|
||||||
|
percent_10_2_liquid_material_name:
|
||||||
|
type: string
|
||||||
|
percent_10_2_target_weigh:
|
||||||
|
type: string
|
||||||
|
percent_10_2_volume:
|
||||||
|
type: string
|
||||||
|
percent_10_3_assign_material_name:
|
||||||
|
type: string
|
||||||
|
percent_10_3_liquid_material_name:
|
||||||
|
type: string
|
||||||
|
percent_10_3_target_weigh:
|
||||||
|
type: string
|
||||||
|
percent_10_3_volume:
|
||||||
|
type: string
|
||||||
|
percent_90_1_assign_material_name:
|
||||||
|
type: string
|
||||||
|
percent_90_1_target_weigh:
|
||||||
|
type: string
|
||||||
|
percent_90_2_assign_material_name:
|
||||||
|
type: string
|
||||||
|
percent_90_2_target_weigh:
|
||||||
|
type: string
|
||||||
|
percent_90_3_assign_material_name:
|
||||||
|
type: string
|
||||||
|
percent_90_3_target_weigh:
|
||||||
|
type: string
|
||||||
|
speed:
|
||||||
|
type: string
|
||||||
|
temperature:
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- order_name
|
||||||
|
- percent_90_1_assign_material_name
|
||||||
|
- percent_90_1_target_weigh
|
||||||
|
- percent_90_2_assign_material_name
|
||||||
|
- percent_90_2_target_weigh
|
||||||
|
- percent_90_3_assign_material_name
|
||||||
|
- percent_90_3_target_weigh
|
||||||
|
- percent_10_1_assign_material_name
|
||||||
|
- percent_10_1_target_weigh
|
||||||
|
- percent_10_1_volume
|
||||||
|
- percent_10_1_liquid_material_name
|
||||||
|
- percent_10_2_assign_material_name
|
||||||
|
- percent_10_2_target_weigh
|
||||||
|
- percent_10_2_volume
|
||||||
|
- percent_10_2_liquid_material_name
|
||||||
|
- percent_10_3_assign_material_name
|
||||||
|
- percent_10_3_target_weigh
|
||||||
|
- percent_10_3_volume
|
||||||
|
- percent_10_3_liquid_material_name
|
||||||
|
- speed
|
||||||
|
- temperature
|
||||||
|
- delay_time
|
||||||
|
- hold_m_name
|
||||||
|
title: DispenStationVialFeed_Goal
|
||||||
|
type: object
|
||||||
|
result:
|
||||||
|
properties:
|
||||||
|
return_info:
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- return_info
|
||||||
|
title: DispenStationVialFeed_Result
|
||||||
|
type: object
|
||||||
|
required:
|
||||||
|
- goal
|
||||||
|
title: DispenStationVialFeed
|
||||||
|
type: object
|
||||||
|
type: DispenStationVialFeed
|
||||||
|
create_diamine_solution_task:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
delay_time: delay_time
|
||||||
|
hold_m_name: hold_m_name
|
||||||
|
liquid_material_name: liquid_material_name
|
||||||
|
material_name: material_name
|
||||||
|
order_name: order_name
|
||||||
|
speed: speed
|
||||||
|
target_weigh: target_weigh
|
||||||
|
temperature: temperature
|
||||||
|
volume: volume
|
||||||
|
goal_default:
|
||||||
|
delay_time: ''
|
||||||
|
hold_m_name: ''
|
||||||
|
liquid_material_name: ''
|
||||||
|
material_name: ''
|
||||||
|
order_name: ''
|
||||||
|
speed: ''
|
||||||
|
target_weigh: ''
|
||||||
|
temperature: ''
|
||||||
|
volume: ''
|
||||||
|
handles: {}
|
||||||
|
result:
|
||||||
|
return_info: return_info
|
||||||
|
schema:
|
||||||
|
description: ''
|
||||||
|
properties:
|
||||||
|
feedback:
|
||||||
|
properties: {}
|
||||||
|
required: []
|
||||||
|
title: DispenStationSolnPrep_Feedback
|
||||||
|
type: object
|
||||||
|
goal:
|
||||||
|
properties:
|
||||||
|
delay_time:
|
||||||
|
type: string
|
||||||
|
hold_m_name:
|
||||||
|
type: string
|
||||||
|
liquid_material_name:
|
||||||
|
type: string
|
||||||
|
material_name:
|
||||||
|
type: string
|
||||||
|
order_name:
|
||||||
|
type: string
|
||||||
|
speed:
|
||||||
|
type: string
|
||||||
|
target_weigh:
|
||||||
|
type: string
|
||||||
|
temperature:
|
||||||
|
type: string
|
||||||
|
volume:
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- order_name
|
||||||
|
- material_name
|
||||||
|
- target_weigh
|
||||||
|
- volume
|
||||||
|
- liquid_material_name
|
||||||
|
- speed
|
||||||
|
- temperature
|
||||||
|
- delay_time
|
||||||
|
- hold_m_name
|
||||||
|
title: DispenStationSolnPrep_Goal
|
||||||
|
type: object
|
||||||
|
result:
|
||||||
|
properties:
|
||||||
|
return_info:
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- return_info
|
||||||
|
title: DispenStationSolnPrep_Result
|
||||||
|
type: object
|
||||||
|
required:
|
||||||
|
- goal
|
||||||
|
title: DispenStationSolnPrep
|
||||||
|
type: object
|
||||||
|
type: DispenStationSolnPrep
|
||||||
|
module: unilabos.devices.workstation.bioyond_studio.dispensing_station:BioyondDispensingStation
|
||||||
|
status_types: {}
|
||||||
|
type: python
|
||||||
|
config_info: []
|
||||||
|
description: ''
|
||||||
|
handles: []
|
||||||
|
icon: preparation_station.webp
|
||||||
|
init_param_schema:
|
||||||
|
config:
|
||||||
|
properties:
|
||||||
|
config:
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- config
|
||||||
|
type: object
|
||||||
|
data:
|
||||||
|
properties: {}
|
||||||
|
required: []
|
||||||
|
type: object
|
||||||
|
version: 1.0.0
|
||||||
@@ -4,67 +4,38 @@ reaction_station.bioyond:
|
|||||||
- reaction_station_bioyond
|
- reaction_station_bioyond
|
||||||
class:
|
class:
|
||||||
action_value_mappings:
|
action_value_mappings:
|
||||||
auto-append_to_workflow_sequence:
|
drip_back:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal: {}
|
goal:
|
||||||
|
assign_material_name: assign_material_name
|
||||||
|
temperature: temperature
|
||||||
|
time: time
|
||||||
|
titration_type: titration_type
|
||||||
|
torque_variation: torque_variation
|
||||||
|
volume: volume
|
||||||
goal_default:
|
goal_default:
|
||||||
web_workflow_name: null
|
assign_material_name: ''
|
||||||
|
temperature: ''
|
||||||
|
time: ''
|
||||||
|
titration_type: ''
|
||||||
|
torque_variation: ''
|
||||||
|
volume: ''
|
||||||
handles: {}
|
handles: {}
|
||||||
placeholder_keys: {}
|
|
||||||
result: {}
|
result: {}
|
||||||
schema:
|
schema:
|
||||||
description: ''
|
description: 滴回去
|
||||||
properties:
|
properties:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
properties:
|
properties:
|
||||||
web_workflow_name:
|
assign_material_name:
|
||||||
|
description: 物料名称(不能为空)
|
||||||
type: string
|
type: string
|
||||||
required:
|
temperature:
|
||||||
- web_workflow_name
|
description: 温度设定(°C)
|
||||||
type: object
|
type: string
|
||||||
result: {}
|
time:
|
||||||
required:
|
description: 观察时间(分钟)
|
||||||
- goal
|
|
||||||
title: append_to_workflow_sequence参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
auto-clear_workflows:
|
|
||||||
feedback: {}
|
|
||||||
goal: {}
|
|
||||||
goal_default: {}
|
|
||||||
handles: {}
|
|
||||||
placeholder_keys: {}
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: ''
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties: {}
|
|
||||||
required: []
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: clear_workflows参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
auto-load_bioyond_data_from_file:
|
|
||||||
feedback: {}
|
|
||||||
goal: {}
|
|
||||||
goal_default:
|
|
||||||
file_path: null
|
|
||||||
handles: {}
|
|
||||||
placeholder_keys: {}
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: ''
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties:
|
|
||||||
file_path:
|
|
||||||
type: string
|
type: string
|
||||||
required:
|
required:
|
||||||
- file_path
|
- file_path
|
||||||
@@ -116,397 +87,35 @@ reaction_station.bioyond:
|
|||||||
properties:
|
properties:
|
||||||
json_str:
|
json_str:
|
||||||
type: string
|
type: string
|
||||||
required:
|
|
||||||
- json_str
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: process_web_workflows参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
auto-reset_workstation:
|
|
||||||
feedback: {}
|
|
||||||
goal: {}
|
|
||||||
goal_default: {}
|
|
||||||
handles: {}
|
|
||||||
placeholder_keys: {}
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: ''
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties: {}
|
|
||||||
required: []
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: reset_workstation参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
auto-resource_tree_add:
|
|
||||||
feedback: {}
|
|
||||||
goal: {}
|
|
||||||
goal_default:
|
|
||||||
resources: null
|
|
||||||
handles: {}
|
|
||||||
placeholder_keys: {}
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: ''
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties:
|
|
||||||
resources:
|
|
||||||
items:
|
|
||||||
type: object
|
|
||||||
type: array
|
|
||||||
required:
|
|
||||||
- resources
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: resource_tree_add参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
auto-set_workflow_sequence:
|
|
||||||
feedback: {}
|
|
||||||
goal: {}
|
|
||||||
goal_default:
|
|
||||||
json_str: null
|
|
||||||
handles: {}
|
|
||||||
placeholder_keys: {}
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: ''
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties:
|
|
||||||
json_str:
|
|
||||||
type: string
|
|
||||||
required:
|
|
||||||
- json_str
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: set_workflow_sequence参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
auto-transfer_resource_to_another:
|
|
||||||
feedback: {}
|
|
||||||
goal: {}
|
|
||||||
goal_default:
|
|
||||||
mount_device_id: null
|
|
||||||
mount_resource: null
|
|
||||||
resource: null
|
|
||||||
sites: null
|
|
||||||
handles: {}
|
|
||||||
placeholder_keys:
|
|
||||||
mount_device_id: unilabos_devices
|
|
||||||
mount_resource: unilabos_resources
|
|
||||||
resource: unilabos_resources
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: ''
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties:
|
|
||||||
mount_device_id:
|
|
||||||
type: object
|
|
||||||
mount_resource:
|
|
||||||
items:
|
|
||||||
properties:
|
|
||||||
category:
|
|
||||||
type: string
|
|
||||||
children:
|
|
||||||
items:
|
|
||||||
type: string
|
|
||||||
type: array
|
|
||||||
config:
|
|
||||||
type: string
|
|
||||||
data:
|
|
||||||
type: string
|
|
||||||
id:
|
|
||||||
type: string
|
|
||||||
name:
|
|
||||||
type: string
|
|
||||||
parent:
|
|
||||||
type: string
|
|
||||||
pose:
|
|
||||||
properties:
|
|
||||||
orientation:
|
|
||||||
properties:
|
|
||||||
w:
|
|
||||||
type: number
|
|
||||||
x:
|
|
||||||
type: number
|
|
||||||
y:
|
|
||||||
type: number
|
|
||||||
z:
|
|
||||||
type: number
|
|
||||||
required:
|
|
||||||
- x
|
|
||||||
- y
|
|
||||||
- z
|
|
||||||
- w
|
|
||||||
title: orientation
|
|
||||||
type: object
|
|
||||||
position:
|
|
||||||
properties:
|
|
||||||
x:
|
|
||||||
type: number
|
|
||||||
y:
|
|
||||||
type: number
|
|
||||||
z:
|
|
||||||
type: number
|
|
||||||
required:
|
|
||||||
- x
|
|
||||||
- y
|
|
||||||
- z
|
|
||||||
title: position
|
|
||||||
type: object
|
|
||||||
required:
|
|
||||||
- position
|
|
||||||
- orientation
|
|
||||||
title: pose
|
|
||||||
type: object
|
|
||||||
sample_id:
|
|
||||||
type: string
|
|
||||||
type:
|
|
||||||
type: string
|
|
||||||
required:
|
|
||||||
- id
|
|
||||||
- name
|
|
||||||
- sample_id
|
|
||||||
- children
|
|
||||||
- parent
|
|
||||||
- type
|
|
||||||
- category
|
|
||||||
- pose
|
|
||||||
- config
|
|
||||||
- data
|
|
||||||
title: mount_resource
|
|
||||||
type: object
|
|
||||||
type: array
|
|
||||||
resource:
|
|
||||||
items:
|
|
||||||
properties:
|
|
||||||
category:
|
|
||||||
type: string
|
|
||||||
children:
|
|
||||||
items:
|
|
||||||
type: string
|
|
||||||
type: array
|
|
||||||
config:
|
|
||||||
type: string
|
|
||||||
data:
|
|
||||||
type: string
|
|
||||||
id:
|
|
||||||
type: string
|
|
||||||
name:
|
|
||||||
type: string
|
|
||||||
parent:
|
|
||||||
type: string
|
|
||||||
pose:
|
|
||||||
properties:
|
|
||||||
orientation:
|
|
||||||
properties:
|
|
||||||
w:
|
|
||||||
type: number
|
|
||||||
x:
|
|
||||||
type: number
|
|
||||||
y:
|
|
||||||
type: number
|
|
||||||
z:
|
|
||||||
type: number
|
|
||||||
required:
|
|
||||||
- x
|
|
||||||
- y
|
|
||||||
- z
|
|
||||||
- w
|
|
||||||
title: orientation
|
|
||||||
type: object
|
|
||||||
position:
|
|
||||||
properties:
|
|
||||||
x:
|
|
||||||
type: number
|
|
||||||
y:
|
|
||||||
type: number
|
|
||||||
z:
|
|
||||||
type: number
|
|
||||||
required:
|
|
||||||
- x
|
|
||||||
- y
|
|
||||||
- z
|
|
||||||
title: position
|
|
||||||
type: object
|
|
||||||
required:
|
|
||||||
- position
|
|
||||||
- orientation
|
|
||||||
title: pose
|
|
||||||
type: object
|
|
||||||
sample_id:
|
|
||||||
type: string
|
|
||||||
type:
|
|
||||||
type: string
|
|
||||||
required:
|
|
||||||
- id
|
|
||||||
- name
|
|
||||||
- sample_id
|
|
||||||
- children
|
|
||||||
- parent
|
|
||||||
- type
|
|
||||||
- category
|
|
||||||
- pose
|
|
||||||
- config
|
|
||||||
- data
|
|
||||||
title: resource
|
|
||||||
type: object
|
|
||||||
type: array
|
|
||||||
sites:
|
|
||||||
items:
|
|
||||||
type: string
|
|
||||||
type: array
|
|
||||||
required:
|
|
||||||
- resource
|
|
||||||
- mount_resource
|
|
||||||
- sites
|
|
||||||
- mount_device_id
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: transfer_resource_to_another参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
bioyond_sync:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
force_sync: force_sync
|
|
||||||
sync_type: sync_type
|
|
||||||
goal_default:
|
|
||||||
force_sync: false
|
|
||||||
sync_type: full
|
|
||||||
handles: {}
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: 从Bioyond系统同步物料
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties:
|
|
||||||
force_sync:
|
|
||||||
description: 是否强制同步
|
|
||||||
type: boolean
|
|
||||||
sync_type:
|
|
||||||
description: 同步类型
|
|
||||||
enum:
|
|
||||||
- full
|
|
||||||
- incremental
|
|
||||||
type: string
|
|
||||||
required:
|
|
||||||
- sync_type
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: bioyond_sync参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
bioyond_update:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
material_ids: material_ids
|
|
||||||
sync_all: sync_all
|
|
||||||
goal_default:
|
|
||||||
material_ids: []
|
|
||||||
sync_all: true
|
|
||||||
handles: {}
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: 将本地物料变更同步到Bioyond
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties:
|
|
||||||
material_ids:
|
|
||||||
description: 要同步的物料ID列表
|
|
||||||
items:
|
|
||||||
type: string
|
|
||||||
type: array
|
|
||||||
sync_all:
|
|
||||||
description: 是否同步所有物料
|
|
||||||
type: boolean
|
|
||||||
required:
|
|
||||||
- sync_all
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: bioyond_update参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
reaction_station_drip_back:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
assign_material_name: assign_material_name
|
|
||||||
time: time
|
|
||||||
torque_variation: torque_variation
|
|
||||||
volume: volume
|
|
||||||
goal_default:
|
|
||||||
assign_material_name: ''
|
|
||||||
time: ''
|
|
||||||
torque_variation: ''
|
|
||||||
volume: ''
|
|
||||||
handles: {}
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: 反应站滴回操作
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties:
|
|
||||||
assign_material_name:
|
|
||||||
description: 溶剂名称
|
|
||||||
type: string
|
|
||||||
time:
|
|
||||||
description: 观察时间(单位min)
|
|
||||||
type: string
|
|
||||||
torque_variation:
|
|
||||||
description: 是否观察1否2是
|
|
||||||
type: string
|
|
||||||
volume:
|
volume:
|
||||||
description: 投料体积
|
description: 分液公式(μL)
|
||||||
type: string
|
type: string
|
||||||
required:
|
required:
|
||||||
- volume
|
- volume
|
||||||
- assign_material_name
|
- assign_material_name
|
||||||
- time
|
- time
|
||||||
- torque_variation
|
- torque_variation
|
||||||
|
- titration_type
|
||||||
|
- temperature
|
||||||
type: object
|
type: object
|
||||||
result: {}
|
result: {}
|
||||||
required:
|
required:
|
||||||
- goal
|
- goal
|
||||||
title: reaction_station_drip_back参数
|
title: drip_back参数
|
||||||
type: object
|
type: object
|
||||||
type: UniLabJsonCommand
|
type: UniLabJsonCommand
|
||||||
reaction_station_liquid_feed:
|
liquid_feeding_beaker:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
assign_material_name: assign_material_name
|
assign_material_name: assign_material_name
|
||||||
|
temperature: temperature
|
||||||
time: time
|
time: time
|
||||||
titration_type: titration_type
|
titration_type: titration_type
|
||||||
torque_variation: torque_variation
|
torque_variation: torque_variation
|
||||||
volume: volume
|
volume: volume
|
||||||
goal_default:
|
goal_default:
|
||||||
assign_material_name: ''
|
assign_material_name: ''
|
||||||
|
temperature: ''
|
||||||
time: ''
|
time: ''
|
||||||
titration_type: ''
|
titration_type: ''
|
||||||
torque_variation: ''
|
torque_variation: ''
|
||||||
@@ -514,40 +123,223 @@ reaction_station.bioyond:
|
|||||||
handles: {}
|
handles: {}
|
||||||
result: {}
|
result: {}
|
||||||
schema:
|
schema:
|
||||||
description: 反应站液体进料操作
|
description: 液体进料烧杯
|
||||||
properties:
|
properties:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
properties:
|
properties:
|
||||||
assign_material_name:
|
assign_material_name:
|
||||||
description: 溶剂名称
|
description: 物料名称
|
||||||
|
type: string
|
||||||
|
temperature:
|
||||||
|
description: 温度设定(°C)
|
||||||
type: string
|
type: string
|
||||||
time:
|
time:
|
||||||
description: 观察时间(单位min)
|
description: 观察时间(分钟)
|
||||||
type: string
|
type: string
|
||||||
titration_type:
|
titration_type:
|
||||||
description: 滴定类型1否2是
|
description: 是否滴定(1=否, 2=是)
|
||||||
type: string
|
type: string
|
||||||
torque_variation:
|
torque_variation:
|
||||||
description: 是否观察1否2是
|
description: 是否观察 (1=否, 2=是)
|
||||||
type: string
|
type: string
|
||||||
volume:
|
volume:
|
||||||
description: 投料体积
|
description: 分液公式(μL)
|
||||||
type: string
|
type: string
|
||||||
required:
|
required:
|
||||||
- titration_type
|
|
||||||
- volume
|
- volume
|
||||||
- assign_material_name
|
- assign_material_name
|
||||||
- time
|
- time
|
||||||
- torque_variation
|
- torque_variation
|
||||||
|
- titration_type
|
||||||
|
- temperature
|
||||||
type: object
|
type: object
|
||||||
result: {}
|
result: {}
|
||||||
required:
|
required:
|
||||||
- goal
|
- goal
|
||||||
title: reaction_station_liquid_feed参数
|
title: liquid_feeding_beaker参数
|
||||||
type: object
|
type: object
|
||||||
type: UniLabJsonCommand
|
type: UniLabJsonCommand
|
||||||
reaction_station_process_execute:
|
liquid_feeding_solvents:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
assign_material_name: assign_material_name
|
||||||
|
solvents: solvents
|
||||||
|
temperature: temperature
|
||||||
|
time: time
|
||||||
|
titration_type: titration_type
|
||||||
|
torque_variation: torque_variation
|
||||||
|
volume: volume
|
||||||
|
goal_default:
|
||||||
|
assign_material_name: ''
|
||||||
|
solvents: ''
|
||||||
|
temperature: '25.00'
|
||||||
|
time: '360'
|
||||||
|
titration_type: '1'
|
||||||
|
torque_variation: '2'
|
||||||
|
volume: ''
|
||||||
|
handles:
|
||||||
|
input:
|
||||||
|
- data_key: solvents
|
||||||
|
data_source: handle
|
||||||
|
data_type: object
|
||||||
|
handler_key: solvents
|
||||||
|
io_type: source
|
||||||
|
label: Solvents Data From Calculation Node
|
||||||
|
result: {}
|
||||||
|
schema:
|
||||||
|
description: 液体投料-溶剂。可以直接提供volume(μL),或通过solvents对象自动从additional_solvent(mL)计算volume。
|
||||||
|
properties:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
properties:
|
||||||
|
assign_material_name:
|
||||||
|
description: 物料名称
|
||||||
|
type: string
|
||||||
|
solvents:
|
||||||
|
description: '溶剂信息对象(可选),包含: additional_solvent(溶剂体积mL), total_liquid_volume(总液体体积mL)。如果提供,将自动计算volume'
|
||||||
|
type: string
|
||||||
|
temperature:
|
||||||
|
default: '25.00'
|
||||||
|
description: 温度设定(°C),默认25.00
|
||||||
|
type: string
|
||||||
|
time:
|
||||||
|
default: '360'
|
||||||
|
description: 观察时间(分钟),默认360
|
||||||
|
type: string
|
||||||
|
titration_type:
|
||||||
|
default: '1'
|
||||||
|
description: 是否滴定(1=否, 2=是),默认1
|
||||||
|
type: string
|
||||||
|
torque_variation:
|
||||||
|
default: '2'
|
||||||
|
description: 是否观察 (1=否, 2=是),默认2
|
||||||
|
type: string
|
||||||
|
volume:
|
||||||
|
description: 分液量(μL)。可直接提供,或通过solvents参数自动计算
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- assign_material_name
|
||||||
|
type: object
|
||||||
|
result: {}
|
||||||
|
required:
|
||||||
|
- goal
|
||||||
|
title: liquid_feeding_solvents参数
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommand
|
||||||
|
liquid_feeding_titration:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
assign_material_name: assign_material_name
|
||||||
|
temperature: temperature
|
||||||
|
time: time
|
||||||
|
titration_type: titration_type
|
||||||
|
torque_variation: torque_variation
|
||||||
|
volume_formula: volume_formula
|
||||||
|
goal_default:
|
||||||
|
assign_material_name: ''
|
||||||
|
temperature: ''
|
||||||
|
time: ''
|
||||||
|
titration_type: ''
|
||||||
|
torque_variation: ''
|
||||||
|
volume_formula: ''
|
||||||
|
handles: {}
|
||||||
|
result: {}
|
||||||
|
schema:
|
||||||
|
description: 液体进料(滴定)
|
||||||
|
properties:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
properties:
|
||||||
|
assign_material_name:
|
||||||
|
description: 物料名称
|
||||||
|
type: string
|
||||||
|
temperature:
|
||||||
|
description: 温度设定(°C)
|
||||||
|
type: string
|
||||||
|
time:
|
||||||
|
description: 观察时间(分钟)
|
||||||
|
type: string
|
||||||
|
titration_type:
|
||||||
|
description: 是否滴定(1=否, 2=是)
|
||||||
|
type: string
|
||||||
|
torque_variation:
|
||||||
|
description: 是否观察 (1=否, 2=是)
|
||||||
|
type: string
|
||||||
|
volume_formula:
|
||||||
|
description: 分液公式(μL)
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- volume_formula
|
||||||
|
- assign_material_name
|
||||||
|
- time
|
||||||
|
- torque_variation
|
||||||
|
- titration_type
|
||||||
|
- temperature
|
||||||
|
type: object
|
||||||
|
result: {}
|
||||||
|
required:
|
||||||
|
- goal
|
||||||
|
title: liquid_feeding_titration参数
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommand
|
||||||
|
liquid_feeding_vials_non_titration:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
assign_material_name: assign_material_name
|
||||||
|
temperature: temperature
|
||||||
|
time: time
|
||||||
|
titration_type: titration_type
|
||||||
|
torque_variation: torque_variation
|
||||||
|
volume_formula: volume_formula
|
||||||
|
goal_default:
|
||||||
|
assign_material_name: ''
|
||||||
|
temperature: ''
|
||||||
|
time: ''
|
||||||
|
titration_type: ''
|
||||||
|
torque_variation: ''
|
||||||
|
volume_formula: ''
|
||||||
|
handles: {}
|
||||||
|
result: {}
|
||||||
|
schema:
|
||||||
|
description: 液体进料小瓶(非滴定)
|
||||||
|
properties:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
properties:
|
||||||
|
assign_material_name:
|
||||||
|
description: 物料名称
|
||||||
|
type: string
|
||||||
|
temperature:
|
||||||
|
description: 温度设定(°C)
|
||||||
|
type: string
|
||||||
|
time:
|
||||||
|
description: 观察时间(分钟)
|
||||||
|
type: string
|
||||||
|
titration_type:
|
||||||
|
description: 是否滴定(1=否, 2=是)
|
||||||
|
type: string
|
||||||
|
torque_variation:
|
||||||
|
description: 是否观察 (1=否, 2=是)
|
||||||
|
type: string
|
||||||
|
volume_formula:
|
||||||
|
description: 分液公式(μL)
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- volume_formula
|
||||||
|
- assign_material_name
|
||||||
|
- time
|
||||||
|
- torque_variation
|
||||||
|
- titration_type
|
||||||
|
- temperature
|
||||||
|
type: object
|
||||||
|
result: {}
|
||||||
|
required:
|
||||||
|
- goal
|
||||||
|
title: liquid_feeding_vials_non_titration参数
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommand
|
||||||
|
process_and_execute_workflow:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
task_name: task_name
|
task_name: task_name
|
||||||
@@ -558,7 +350,7 @@ reaction_station.bioyond:
|
|||||||
handles: {}
|
handles: {}
|
||||||
result: {}
|
result: {}
|
||||||
schema:
|
schema:
|
||||||
description: 反应站流程执行
|
description: 处理并执行工作流
|
||||||
properties:
|
properties:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
@@ -576,92 +368,10 @@ reaction_station.bioyond:
|
|||||||
result: {}
|
result: {}
|
||||||
required:
|
required:
|
||||||
- goal
|
- goal
|
||||||
title: reaction_station_process_execute参数
|
title: process_and_execute_workflow参数
|
||||||
type: object
|
type: object
|
||||||
type: UniLabJsonCommand
|
type: UniLabJsonCommand
|
||||||
reaction_station_reactor_taken_out:
|
reactor_taken_in:
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
order_id: order_id
|
|
||||||
preintake_id: preintake_id
|
|
||||||
goal_default:
|
|
||||||
order_id: ''
|
|
||||||
preintake_id: ''
|
|
||||||
handles: {}
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: 反应站反应器取出操作 - 通过订单ID和预取样ID进行精确控制
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties:
|
|
||||||
order_id:
|
|
||||||
description: 订单ID,用于标识要取出的订单
|
|
||||||
type: string
|
|
||||||
preintake_id:
|
|
||||||
description: 预取样ID,用于标识具体的取样任务
|
|
||||||
type: string
|
|
||||||
required: []
|
|
||||||
type: object
|
|
||||||
result:
|
|
||||||
properties:
|
|
||||||
code:
|
|
||||||
description: 操作结果代码(1表示成功,0表示失败)
|
|
||||||
type: integer
|
|
||||||
return_info:
|
|
||||||
description: 操作结果详细信息
|
|
||||||
type: string
|
|
||||||
type: object
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: reaction_station_reactor_taken_out参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
reaction_station_solid_feed_vial:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
assign_material_name: assign_material_name
|
|
||||||
material_id: material_id
|
|
||||||
time: time
|
|
||||||
torque_variation: torque_variation
|
|
||||||
goal_default:
|
|
||||||
assign_material_name: ''
|
|
||||||
material_id: ''
|
|
||||||
time: ''
|
|
||||||
torque_variation: ''
|
|
||||||
handles: {}
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: 反应站固体进料操作
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties:
|
|
||||||
assign_material_name:
|
|
||||||
description: 固体名称_粉末加样模块-投料
|
|
||||||
type: string
|
|
||||||
material_id:
|
|
||||||
description: 固体投料类型_粉末加样模块-投料
|
|
||||||
type: string
|
|
||||||
time:
|
|
||||||
description: 观察时间_反应模块-观察搅拌结果
|
|
||||||
type: string
|
|
||||||
torque_variation:
|
|
||||||
description: 是否观察1否2是_反应模块-观察搅拌结果
|
|
||||||
type: string
|
|
||||||
required:
|
|
||||||
- assign_material_name
|
|
||||||
- material_id
|
|
||||||
- time
|
|
||||||
- torque_variation
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: reaction_station_solid_feed_vial参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommand
|
|
||||||
reaction_station_take_in:
|
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
assign_material_name: assign_material_name
|
assign_material_name: assign_material_name
|
||||||
@@ -674,7 +384,7 @@ reaction_station.bioyond:
|
|||||||
handles: {}
|
handles: {}
|
||||||
result: {}
|
result: {}
|
||||||
schema:
|
schema:
|
||||||
description: 反应站取入操作
|
description: 反应器放入 - 将反应器放入工作站,配置物料名称、粘度上限和温度参数
|
||||||
properties:
|
properties:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
@@ -683,10 +393,10 @@ reaction_station.bioyond:
|
|||||||
description: 物料名称
|
description: 物料名称
|
||||||
type: string
|
type: string
|
||||||
cutoff:
|
cutoff:
|
||||||
description: 截止参数
|
description: 粘度上限
|
||||||
type: string
|
type: string
|
||||||
temperature:
|
temperature:
|
||||||
description: 温度
|
description: 温度设定(°C)
|
||||||
type: string
|
type: string
|
||||||
required:
|
required:
|
||||||
- cutoff
|
- cutoff
|
||||||
@@ -696,10 +406,88 @@ reaction_station.bioyond:
|
|||||||
result: {}
|
result: {}
|
||||||
required:
|
required:
|
||||||
- goal
|
- goal
|
||||||
title: reaction_station_take_in参数
|
title: reactor_taken_in参数
|
||||||
type: object
|
type: object
|
||||||
type: UniLabJsonCommand
|
type: UniLabJsonCommand
|
||||||
module: unilabos.devices.workstation.bioyond_studio.station:BioyondWorkstation
|
reactor_taken_out:
|
||||||
|
feedback: {}
|
||||||
|
goal: {}
|
||||||
|
goal_default: {}
|
||||||
|
handles: {}
|
||||||
|
result: {}
|
||||||
|
schema:
|
||||||
|
description: 反应器取出 - 从工作站中取出反应器,无需参数的简单操作
|
||||||
|
properties:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
properties: {}
|
||||||
|
required: []
|
||||||
|
type: object
|
||||||
|
result:
|
||||||
|
properties:
|
||||||
|
code:
|
||||||
|
description: 操作结果代码(1表示成功,0表示失败)
|
||||||
|
type: integer
|
||||||
|
return_info:
|
||||||
|
description: 操作结果详细信息
|
||||||
|
type: string
|
||||||
|
type: object
|
||||||
|
required:
|
||||||
|
- goal
|
||||||
|
title: reactor_taken_out参数
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommand
|
||||||
|
solid_feeding_vials:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
assign_material_name: assign_material_name
|
||||||
|
material_id: material_id
|
||||||
|
temperature: temperature
|
||||||
|
time: time
|
||||||
|
torque_variation: torque_variation
|
||||||
|
goal_default:
|
||||||
|
assign_material_name: ''
|
||||||
|
material_id: ''
|
||||||
|
temperature: ''
|
||||||
|
time: ''
|
||||||
|
torque_variation: ''
|
||||||
|
handles: {}
|
||||||
|
result: {}
|
||||||
|
schema:
|
||||||
|
description: 固体进料小瓶 - 通过小瓶向反应器中添加固体物料,支持多种粉末类型(盐、面粉、BTDA)
|
||||||
|
properties:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
properties:
|
||||||
|
assign_material_name:
|
||||||
|
description: 物料名称(用于获取试剂瓶位ID)
|
||||||
|
type: string
|
||||||
|
material_id:
|
||||||
|
description: 粉末类型ID,1=盐(21分钟),2=面粉(27分钟),3=BTDA(38分钟)
|
||||||
|
type: string
|
||||||
|
temperature:
|
||||||
|
description: 温度设定(°C)
|
||||||
|
type: string
|
||||||
|
time:
|
||||||
|
description: 观察时间(分钟)
|
||||||
|
type: string
|
||||||
|
torque_variation:
|
||||||
|
description: 是否观察 (1=否, 2=是)
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- assign_material_name
|
||||||
|
- material_id
|
||||||
|
- time
|
||||||
|
- torque_variation
|
||||||
|
- temperature
|
||||||
|
type: object
|
||||||
|
result: {}
|
||||||
|
required:
|
||||||
|
- goal
|
||||||
|
title: solid_feeding_vials参数
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommand
|
||||||
|
module: unilabos.devices.workstation.bioyond_studio.reaction_station:BioyondReactionStation
|
||||||
protocol_type: []
|
protocol_type: []
|
||||||
status_types:
|
status_types:
|
||||||
all_workflows: dict
|
all_workflows: dict
|
||||||
@@ -708,14 +496,14 @@ reaction_station.bioyond:
|
|||||||
workstation_status: dict
|
workstation_status: dict
|
||||||
type: python
|
type: python
|
||||||
config_info: []
|
config_info: []
|
||||||
description: Bioyond反应站 - 专门用于化学反应操作的工作站
|
description: Bioyond反应站
|
||||||
handles: []
|
handles: []
|
||||||
icon: 反应站.webp
|
icon: reaction_station.webp
|
||||||
init_param_schema:
|
init_param_schema:
|
||||||
config:
|
config:
|
||||||
properties:
|
properties:
|
||||||
bioyond_config:
|
config:
|
||||||
type: string
|
type: object
|
||||||
deck:
|
deck:
|
||||||
type: string
|
type: string
|
||||||
required: []
|
required: []
|
||||||
|
|||||||
@@ -18,6 +18,7 @@ def bioyond_warehouse_1x4x4(name: str) -> WareHouse:
|
|||||||
)
|
)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
def bioyond_warehouse_1x4x2(name: str) -> WareHouse:
|
def bioyond_warehouse_1x4x2(name: str) -> WareHouse:
|
||||||
"""创建BioYond 4x1x2仓库"""
|
"""创建BioYond 4x1x2仓库"""
|
||||||
return warehouse_factory(
|
return warehouse_factory(
|
||||||
|
|||||||
@@ -535,6 +535,7 @@ def resource_ulab_to_plr(resource: dict, plr_model=False) -> "ResourcePLR":
|
|||||||
|
|
||||||
def resource_ulab_to_plr_inner(resource: dict):
|
def resource_ulab_to_plr_inner(resource: dict):
|
||||||
all_states[resource["name"]] = resource["data"]
|
all_states[resource["name"]] = resource["data"]
|
||||||
|
extra = resource.pop("extra", {})
|
||||||
d = {
|
d = {
|
||||||
"name": resource["name"],
|
"name": resource["name"],
|
||||||
"type": resource["type"],
|
"type": resource["type"],
|
||||||
@@ -575,16 +576,16 @@ def resource_plr_to_ulab(resource_plr: "ResourcePLR", parent_name: str = None, w
|
|||||||
replace_info = {
|
replace_info = {
|
||||||
"plate": "plate",
|
"plate": "plate",
|
||||||
"well": "well",
|
"well": "well",
|
||||||
"tip_spot": "container",
|
"tip_spot": "tip_spot",
|
||||||
"trash": "container",
|
"trash": "trash",
|
||||||
"deck": "deck",
|
"deck": "deck",
|
||||||
"tip_rack": "container",
|
"tip_rack": "tip_rack",
|
||||||
}
|
}
|
||||||
if source in replace_info:
|
if source in replace_info:
|
||||||
return replace_info[source]
|
return replace_info[source]
|
||||||
else:
|
else:
|
||||||
print("转换pylabrobot的时候,出现未知类型", source)
|
print("转换pylabrobot的时候,出现未知类型", source)
|
||||||
return "container"
|
return source
|
||||||
|
|
||||||
def resource_plr_to_ulab_inner(d: dict, all_states: dict, child=True) -> dict:
|
def resource_plr_to_ulab_inner(d: dict, all_states: dict, child=True) -> dict:
|
||||||
r = {
|
r = {
|
||||||
|
|||||||
@@ -78,6 +78,7 @@ class ItemizedCarrier(ResourcePLR):
|
|||||||
sites: Optional[Dict[Union[int, str], Optional[ResourcePLR]]] = None,
|
sites: Optional[Dict[Union[int, str], Optional[ResourcePLR]]] = None,
|
||||||
category: Optional[str] = "carrier",
|
category: Optional[str] = "carrier",
|
||||||
model: Optional[str] = None,
|
model: Optional[str] = None,
|
||||||
|
invisible_slots: Optional[str] = None,
|
||||||
):
|
):
|
||||||
super().__init__(
|
super().__init__(
|
||||||
name=name,
|
name=name,
|
||||||
@@ -89,6 +90,7 @@ class ItemizedCarrier(ResourcePLR):
|
|||||||
)
|
)
|
||||||
self.num_items = len(sites)
|
self.num_items = len(sites)
|
||||||
self.num_items_x, self.num_items_y, self.num_items_z = num_items_x, num_items_y, num_items_z
|
self.num_items_x, self.num_items_y, self.num_items_z = num_items_x, num_items_y, num_items_z
|
||||||
|
self.invisible_slots = [] if invisible_slots is None else invisible_slots
|
||||||
self.layout = "z-y" if self.num_items_z > 1 and self.num_items_x == 1 else "x-z" if self.num_items_z > 1 and self.num_items_y == 1 else "x-y"
|
self.layout = "z-y" if self.num_items_z > 1 and self.num_items_x == 1 else "x-z" if self.num_items_z > 1 and self.num_items_y == 1 else "x-y"
|
||||||
|
|
||||||
if isinstance(sites, dict):
|
if isinstance(sites, dict):
|
||||||
@@ -410,7 +412,7 @@ class ItemizedCarrier(ResourcePLR):
|
|||||||
"layout": self.layout,
|
"layout": self.layout,
|
||||||
"sites": [{
|
"sites": [{
|
||||||
"label": str(identifier),
|
"label": str(identifier),
|
||||||
"visible": True if self[identifier] is not None else False,
|
"visible": False if identifier in self.invisible_slots else True,
|
||||||
"occupied_by": self[identifier].name
|
"occupied_by": self[identifier].name
|
||||||
if isinstance(self[identifier], ResourcePLR) and not isinstance(self[identifier], ResourceHolder) else
|
if isinstance(self[identifier], ResourcePLR) and not isinstance(self[identifier], ResourceHolder) else
|
||||||
self[identifier] if isinstance(self[identifier], str) else None,
|
self[identifier] if isinstance(self[identifier], str) else None,
|
||||||
@@ -433,6 +435,7 @@ class BottleCarrier(ItemizedCarrier):
|
|||||||
sites: Optional[Dict[Union[int, str], ResourceHolder]] = None,
|
sites: Optional[Dict[Union[int, str], ResourceHolder]] = None,
|
||||||
category: str = "bottle_carrier",
|
category: str = "bottle_carrier",
|
||||||
model: Optional[str] = None,
|
model: Optional[str] = None,
|
||||||
|
invisible_slots: List[str] = None,
|
||||||
**kwargs,
|
**kwargs,
|
||||||
):
|
):
|
||||||
super().__init__(
|
super().__init__(
|
||||||
@@ -443,4 +446,5 @@ class BottleCarrier(ItemizedCarrier):
|
|||||||
sites=sites,
|
sites=sites,
|
||||||
category=category,
|
category=category,
|
||||||
model=model,
|
model=model,
|
||||||
|
invisible_slots=invisible_slots,
|
||||||
)
|
)
|
||||||
|
|||||||
@@ -10,7 +10,7 @@ from unilabos.ros.nodes.presets.resource_mesh_manager import ResourceMeshManager
|
|||||||
from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker, ResourceTreeSet
|
from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker, ResourceTreeSet
|
||||||
from unilabos.devices.ros_dev.liquid_handler_joint_publisher import LiquidHandlerJointPublisher
|
from unilabos.devices.ros_dev.liquid_handler_joint_publisher import LiquidHandlerJointPublisher
|
||||||
from unilabos_msgs.srv import SerialCommand # type: ignore
|
from unilabos_msgs.srv import SerialCommand # type: ignore
|
||||||
from rclpy.executors import MultiThreadedExecutor
|
from rclpy.executors import MultiThreadedExecutor, SingleThreadedExecutor
|
||||||
from rclpy.node import Node
|
from rclpy.node import Node
|
||||||
from rclpy.timer import Timer
|
from rclpy.timer import Timer
|
||||||
|
|
||||||
|
|||||||
@@ -49,7 +49,7 @@ from unilabos_msgs.msg import Resource # type: ignore
|
|||||||
|
|
||||||
from unilabos.ros.nodes.resource_tracker import (
|
from unilabos.ros.nodes.resource_tracker import (
|
||||||
DeviceNodeResourceTracker,
|
DeviceNodeResourceTracker,
|
||||||
ResourceTreeSet,
|
ResourceTreeSet, ResourceTreeInstance,
|
||||||
)
|
)
|
||||||
from unilabos.ros.x.rclpyx import get_event_loop
|
from unilabos.ros.x.rclpyx import get_event_loop
|
||||||
from unilabos.ros.utils.driver_creator import WorkstationNodeCreator, PyLabRobotCreator, DeviceClassCreator
|
from unilabos.ros.utils.driver_creator import WorkstationNodeCreator, PyLabRobotCreator, DeviceClassCreator
|
||||||
@@ -338,12 +338,12 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
|
|
||||||
# 创建资源管理客户端
|
# 创建资源管理客户端
|
||||||
self._resource_clients: Dict[str, Client] = {
|
self._resource_clients: Dict[str, Client] = {
|
||||||
"resource_add": self.create_client(ResourceAdd, "/resources/add"),
|
"resource_add": self.create_client(ResourceAdd, "/resources/add", callback_group=self.callback_group),
|
||||||
"resource_get": self.create_client(SerialCommand, "/resources/get"),
|
"resource_get": self.create_client(SerialCommand, "/resources/get", callback_group=self.callback_group),
|
||||||
"resource_delete": self.create_client(ResourceDelete, "/resources/delete"),
|
"resource_delete": self.create_client(ResourceDelete, "/resources/delete", callback_group=self.callback_group),
|
||||||
"resource_update": self.create_client(ResourceUpdate, "/resources/update"),
|
"resource_update": self.create_client(ResourceUpdate, "/resources/update", callback_group=self.callback_group),
|
||||||
"resource_list": self.create_client(ResourceList, "/resources/list"),
|
"resource_list": self.create_client(ResourceList, "/resources/list", callback_group=self.callback_group),
|
||||||
"c2s_update_resource_tree": self.create_client(SerialCommand, "/c2s_update_resource_tree"),
|
"c2s_update_resource_tree": self.create_client(SerialCommand, "/c2s_update_resource_tree", callback_group=self.callback_group),
|
||||||
}
|
}
|
||||||
|
|
||||||
def re_register_device(req, res):
|
def re_register_device(req, res):
|
||||||
@@ -573,6 +573,52 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
self.lab_logger().error(traceback.format_exc())
|
self.lab_logger().error(traceback.format_exc())
|
||||||
self.lab_logger().debug(f"资源更新结果: {response}")
|
self.lab_logger().debug(f"资源更新结果: {response}")
|
||||||
|
|
||||||
|
def transfer_to_new_resource(self, plr_resource: "ResourcePLR", tree: ResourceTreeInstance, additional_add_params: Dict[str, Any]):
|
||||||
|
parent_uuid = tree.root_node.res_content.parent_uuid
|
||||||
|
if parent_uuid:
|
||||||
|
parent_resource: ResourcePLR = self.resource_tracker.uuid_to_resources.get(parent_uuid)
|
||||||
|
if parent_resource is None:
|
||||||
|
self.lab_logger().warning(
|
||||||
|
f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_uuid}不存在"
|
||||||
|
)
|
||||||
|
else:
|
||||||
|
try:
|
||||||
|
# 特殊兼容所有plr的物料的assign方法,和create_resource append_resource后期同步
|
||||||
|
additional_params = {}
|
||||||
|
extra = getattr(plr_resource, "unilabos_extra", {})
|
||||||
|
if len(extra):
|
||||||
|
self.lab_logger().info(f"发现物料{plr_resource}额外参数: " + str(extra))
|
||||||
|
if "update_resource_site" in extra:
|
||||||
|
additional_add_params["site"] = extra["update_resource_site"]
|
||||||
|
site = additional_add_params.get("site", None)
|
||||||
|
spec = inspect.signature(parent_resource.assign_child_resource)
|
||||||
|
if "spot" in spec.parameters:
|
||||||
|
ordering_dict: Dict[str, Any] = getattr(parent_resource, "_ordering")
|
||||||
|
if ordering_dict:
|
||||||
|
site = list(ordering_dict.keys()).index(site)
|
||||||
|
additional_params["spot"] = site
|
||||||
|
old_parent = plr_resource.parent
|
||||||
|
if old_parent is not None:
|
||||||
|
# plr并不支持同一个deck的加载和卸载
|
||||||
|
self.lab_logger().warning(
|
||||||
|
f"物料{plr_resource}请求从{old_parent}卸载"
|
||||||
|
)
|
||||||
|
old_parent.unassign_child_resource(plr_resource)
|
||||||
|
self.lab_logger().warning(
|
||||||
|
f"物料{plr_resource}请求挂载到{parent_resource},额外参数:{additional_params}"
|
||||||
|
)
|
||||||
|
parent_resource.assign_child_resource(
|
||||||
|
plr_resource, location=None, **additional_params
|
||||||
|
)
|
||||||
|
func = getattr(self.driver_instance, "resource_tree_transfer", None)
|
||||||
|
if callable(func):
|
||||||
|
# 分别是 物料的原来父节点,当前物料的状态,物料的新父节点(此时物料已经重新assign了)
|
||||||
|
func(old_parent, plr_resource, parent_resource)
|
||||||
|
except Exception as e:
|
||||||
|
self.lab_logger().warning(
|
||||||
|
f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_resource}[{parent_uuid}]失败!\n{traceback.format_exc()}"
|
||||||
|
)
|
||||||
|
|
||||||
async def s2c_resource_tree(self, req: SerialCommand_Request, res: SerialCommand_Response):
|
async def s2c_resource_tree(self, req: SerialCommand_Request, res: SerialCommand_Response):
|
||||||
"""
|
"""
|
||||||
处理资源树更新请求
|
处理资源树更新请求
|
||||||
@@ -613,28 +659,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
plr_resources = tree_set.to_plr_resources()
|
plr_resources = tree_set.to_plr_resources()
|
||||||
for plr_resource, tree in zip(plr_resources, tree_set.trees):
|
for plr_resource, tree in zip(plr_resources, tree_set.trees):
|
||||||
self.resource_tracker.add_resource(plr_resource)
|
self.resource_tracker.add_resource(plr_resource)
|
||||||
parent_uuid = tree.root_node.res_content.parent_uuid
|
self.transfer_to_new_resource(plr_resource, tree, additional_add_params)
|
||||||
if parent_uuid:
|
|
||||||
parent_resource: ResourcePLR = self.resource_tracker.uuid_to_resources.get(parent_uuid)
|
|
||||||
if parent_resource is None:
|
|
||||||
self.lab_logger().warning(
|
|
||||||
f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_uuid}不存在"
|
|
||||||
)
|
|
||||||
else:
|
|
||||||
try:
|
|
||||||
# 特殊兼容所有plr的物料的assign方法,和create_resource append_resource后期同步
|
|
||||||
additional_params = {}
|
|
||||||
site = additional_add_params.get("site", None)
|
|
||||||
spec = inspect.signature(parent_resource.assign_child_resource)
|
|
||||||
if "spot" in spec.parameters:
|
|
||||||
additional_params["spot"] = site
|
|
||||||
parent_resource.assign_child_resource(
|
|
||||||
plr_resource, location=None, **additional_params
|
|
||||||
)
|
|
||||||
except Exception as e:
|
|
||||||
self.lab_logger().warning(
|
|
||||||
f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_resource}[{parent_uuid}]失败!\n{traceback.format_exc()}"
|
|
||||||
)
|
|
||||||
func = getattr(self.driver_instance, "resource_tree_add", None)
|
func = getattr(self.driver_instance, "resource_tree_add", None)
|
||||||
if callable(func):
|
if callable(func):
|
||||||
func(plr_resources)
|
func(plr_resources)
|
||||||
@@ -647,6 +672,17 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
original_instance: ResourcePLR = self.resource_tracker.figure_resource(
|
original_instance: ResourcePLR = self.resource_tracker.figure_resource(
|
||||||
{"uuid": tree.root_node.res_content.uuid}, try_mode=False
|
{"uuid": tree.root_node.res_content.uuid}, try_mode=False
|
||||||
)
|
)
|
||||||
|
original_parent_resource = original_instance.parent
|
||||||
|
original_parent_resource_uuid = getattr(original_parent_resource, "unilabos_uuid", None)
|
||||||
|
target_parent_resource_uuid = tree.root_node.res_content.uuid_parent
|
||||||
|
self.lab_logger().info(
|
||||||
|
f"物料{original_instance} 原始父节点{original_parent_resource_uuid} 目标父节点{target_parent_resource_uuid} 更新"
|
||||||
|
)
|
||||||
|
# todo: 对extra进行update
|
||||||
|
if getattr(plr_resource, "unilabos_extra", None) is not None:
|
||||||
|
original_instance.unilabos_extra = getattr(plr_resource, "unilabos_extra")
|
||||||
|
if original_parent_resource_uuid != target_parent_resource_uuid and original_parent_resource is not None:
|
||||||
|
self.transfer_to_new_resource(original_instance, tree, additional_add_params)
|
||||||
original_instance.load_all_state(states)
|
original_instance.load_all_state(states)
|
||||||
self.lab_logger().info(
|
self.lab_logger().info(
|
||||||
f"更新了资源属性 {plr_resource}[{tree.root_node.res_content.uuid}] 及其子节点 {len(original_instance.get_all_children())} 个"
|
f"更新了资源属性 {plr_resource}[{tree.root_node.res_content.uuid}] 及其子节点 {len(original_instance.get_all_children())} 个"
|
||||||
@@ -879,7 +915,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
action_type,
|
action_type,
|
||||||
action_name,
|
action_name,
|
||||||
execute_callback=self._create_execute_callback(action_name, action_value_mapping),
|
execute_callback=self._create_execute_callback(action_name, action_value_mapping),
|
||||||
callback_group=ReentrantCallbackGroup(),
|
callback_group=self.callback_group,
|
||||||
)
|
)
|
||||||
|
|
||||||
self.lab_logger().trace(f"发布动作: {action_name}, 类型: {str_action_type}")
|
self.lab_logger().trace(f"发布动作: {action_name}, 类型: {str_action_type}")
|
||||||
@@ -1500,7 +1536,7 @@ class ROS2DeviceNode:
|
|||||||
asyncio.set_event_loop(loop)
|
asyncio.set_event_loop(loop)
|
||||||
loop.run_forever()
|
loop.run_forever()
|
||||||
|
|
||||||
ROS2DeviceNode._loop_thread = threading.Thread(target=run_event_loop, daemon=True, name="ROS2DeviceNode")
|
ROS2DeviceNode._loop_thread = threading.Thread(target=run_event_loop, daemon=True, name="ROS2DeviceNodeLoop")
|
||||||
ROS2DeviceNode._loop_thread.start()
|
ROS2DeviceNode._loop_thread.start()
|
||||||
logger.info(f"循环线程已启动")
|
logger.info(f"循环线程已启动")
|
||||||
|
|
||||||
|
|||||||
@@ -285,7 +285,7 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
|
|
||||||
# 创建定时器,定期发现设备
|
# 创建定时器,定期发现设备
|
||||||
self._discovery_timer = self.create_timer(
|
self._discovery_timer = self.create_timer(
|
||||||
discovery_interval, self._discovery_devices_callback, callback_group=ReentrantCallbackGroup()
|
discovery_interval, self._discovery_devices_callback, callback_group=self.callback_group
|
||||||
)
|
)
|
||||||
|
|
||||||
# 添加ping-pong相关属性
|
# 添加ping-pong相关属性
|
||||||
@@ -494,7 +494,7 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
if len(init_new_res) > 1: # 一个物料,多个子节点
|
if len(init_new_res) > 1: # 一个物料,多个子节点
|
||||||
init_new_res = [init_new_res]
|
init_new_res = [init_new_res]
|
||||||
resources: List[Resource] | List[List[Resource]] = init_new_res # initialize_resource已经返回list[dict]
|
resources: List[Resource] | List[List[Resource]] = init_new_res # initialize_resource已经返回list[dict]
|
||||||
device_ids = [device_id]
|
device_ids = [device_id.split("/")[-1]]
|
||||||
bind_parent_id = [res_creation_input["parent"]]
|
bind_parent_id = [res_creation_input["parent"]]
|
||||||
bind_location = [bind_locations]
|
bind_location = [bind_locations]
|
||||||
other_calling_param = [
|
other_calling_param = [
|
||||||
@@ -618,7 +618,7 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
topic,
|
topic,
|
||||||
lambda msg, d=device_id, p=property_name: self.property_callback(msg, d, p),
|
lambda msg, d=device_id, p=property_name: self.property_callback(msg, d, p),
|
||||||
1,
|
1,
|
||||||
callback_group=ReentrantCallbackGroup(),
|
callback_group=self.callback_group,
|
||||||
)
|
)
|
||||||
# 标记为已订阅
|
# 标记为已订阅
|
||||||
self._subscribed_topics.add(topic)
|
self._subscribed_topics.add(topic)
|
||||||
@@ -829,37 +829,37 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
def _init_host_service(self):
|
def _init_host_service(self):
|
||||||
self._resource_services: Dict[str, Service] = {
|
self._resource_services: Dict[str, Service] = {
|
||||||
"resource_add": self.create_service(
|
"resource_add": self.create_service(
|
||||||
ResourceAdd, "/resources/add", self._resource_add_callback, callback_group=ReentrantCallbackGroup()
|
ResourceAdd, "/resources/add", self._resource_add_callback, callback_group=self.callback_group
|
||||||
),
|
),
|
||||||
"resource_get": self.create_service(
|
"resource_get": self.create_service(
|
||||||
SerialCommand, "/resources/get", self._resource_get_callback, callback_group=ReentrantCallbackGroup()
|
SerialCommand, "/resources/get", self._resource_get_callback, callback_group=self.callback_group
|
||||||
),
|
),
|
||||||
"resource_delete": self.create_service(
|
"resource_delete": self.create_service(
|
||||||
ResourceDelete,
|
ResourceDelete,
|
||||||
"/resources/delete",
|
"/resources/delete",
|
||||||
self._resource_delete_callback,
|
self._resource_delete_callback,
|
||||||
callback_group=ReentrantCallbackGroup(),
|
callback_group=self.callback_group,
|
||||||
),
|
),
|
||||||
"resource_update": self.create_service(
|
"resource_update": self.create_service(
|
||||||
ResourceUpdate,
|
ResourceUpdate,
|
||||||
"/resources/update",
|
"/resources/update",
|
||||||
self._resource_update_callback,
|
self._resource_update_callback,
|
||||||
callback_group=ReentrantCallbackGroup(),
|
callback_group=self.callback_group,
|
||||||
),
|
),
|
||||||
"resource_list": self.create_service(
|
"resource_list": self.create_service(
|
||||||
ResourceList, "/resources/list", self._resource_list_callback, callback_group=ReentrantCallbackGroup()
|
ResourceList, "/resources/list", self._resource_list_callback, callback_group=self.callback_group
|
||||||
),
|
),
|
||||||
"node_info_update": self.create_service(
|
"node_info_update": self.create_service(
|
||||||
SerialCommand,
|
SerialCommand,
|
||||||
"/node_info_update",
|
"/node_info_update",
|
||||||
self._node_info_update_callback,
|
self._node_info_update_callback,
|
||||||
callback_group=ReentrantCallbackGroup(),
|
callback_group=self.callback_group,
|
||||||
),
|
),
|
||||||
"c2s_update_resource_tree": self.create_service(
|
"c2s_update_resource_tree": self.create_service(
|
||||||
SerialCommand,
|
SerialCommand,
|
||||||
"/c2s_update_resource_tree",
|
"/c2s_update_resource_tree",
|
||||||
self._resource_tree_update_callback,
|
self._resource_tree_update_callback,
|
||||||
callback_group=ReentrantCallbackGroup(),
|
callback_group=self.callback_group,
|
||||||
),
|
),
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|||||||
@@ -194,7 +194,7 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
|
|||||||
action_type,
|
action_type,
|
||||||
action_name,
|
action_name,
|
||||||
execute_callback=self._create_protocol_execute_callback(action_name, protocol_steps_generator),
|
execute_callback=self._create_protocol_execute_callback(action_name, protocol_steps_generator),
|
||||||
callback_group=ReentrantCallbackGroup(),
|
callback_group=self.callback_group,
|
||||||
)
|
)
|
||||||
self.lab_logger().trace(f"发布动作: {action_name}, 类型: {str_action_type}")
|
self.lab_logger().trace(f"发布动作: {action_name}, 类型: {str_action_type}")
|
||||||
return
|
return
|
||||||
|
|||||||
@@ -42,7 +42,9 @@ class ResourceDictPosition(BaseModel):
|
|||||||
rotation: ResourceDictPositionObject = Field(
|
rotation: ResourceDictPositionObject = Field(
|
||||||
description="Resource rotation", default_factory=ResourceDictPositionObject
|
description="Resource rotation", default_factory=ResourceDictPositionObject
|
||||||
)
|
)
|
||||||
cross_section_type: Literal["rectangle", "circle", "rounded_rectangle"] = Field(description="Cross section type", default="rectangle")
|
cross_section_type: Literal["rectangle", "circle", "rounded_rectangle"] = Field(
|
||||||
|
description="Cross section type", default="rectangle"
|
||||||
|
)
|
||||||
|
|
||||||
|
|
||||||
# 统一的资源字典模型,parent 自动序列化为 parent_uuid,children 不序列化
|
# 统一的资源字典模型,parent 自动序列化为 parent_uuid,children 不序列化
|
||||||
@@ -51,7 +53,9 @@ class ResourceDict(BaseModel):
|
|||||||
uuid: str = Field(description="Resource UUID")
|
uuid: str = Field(description="Resource UUID")
|
||||||
name: str = Field(description="Resource name")
|
name: str = Field(description="Resource name")
|
||||||
description: str = Field(description="Resource description", default="")
|
description: str = Field(description="Resource description", default="")
|
||||||
resource_schema: Dict[str, Any] = Field(description="Resource schema", default_factory=dict, serialization_alias="schema", validation_alias="schema")
|
resource_schema: Dict[str, Any] = Field(
|
||||||
|
description="Resource schema", default_factory=dict, serialization_alias="schema", validation_alias="schema"
|
||||||
|
)
|
||||||
model: Dict[str, Any] = Field(description="Resource model", default_factory=dict)
|
model: Dict[str, Any] = Field(description="Resource model", default_factory=dict)
|
||||||
icon: str = Field(description="Resource icon", default="")
|
icon: str = Field(description="Resource icon", default="")
|
||||||
parent_uuid: Optional["str"] = Field(description="Parent resource uuid", default=None) # 先设定parent_uuid
|
parent_uuid: Optional["str"] = Field(description="Parent resource uuid", default=None) # 先设定parent_uuid
|
||||||
@@ -62,6 +66,7 @@ class ResourceDict(BaseModel):
|
|||||||
pose: ResourceDictPosition = Field(description="Resource position", default_factory=ResourceDictPosition)
|
pose: ResourceDictPosition = Field(description="Resource position", default_factory=ResourceDictPosition)
|
||||||
config: Dict[str, Any] = Field(description="Resource configuration")
|
config: Dict[str, Any] = Field(description="Resource configuration")
|
||||||
data: Dict[str, Any] = Field(description="Resource data")
|
data: Dict[str, Any] = Field(description="Resource data")
|
||||||
|
extra: Dict[str, Any] = Field(description="Extra data")
|
||||||
|
|
||||||
@field_serializer("parent_uuid")
|
@field_serializer("parent_uuid")
|
||||||
def _serialize_parent(self, parent_uuid: Optional["ResourceDict"]):
|
def _serialize_parent(self, parent_uuid: Optional["ResourceDict"]):
|
||||||
@@ -138,6 +143,8 @@ class ResourceDictInstance(object):
|
|||||||
content["config"] = {}
|
content["config"] = {}
|
||||||
if not content.get("data"):
|
if not content.get("data"):
|
||||||
content["data"] = {}
|
content["data"] = {}
|
||||||
|
if not content.get("extra"): # MagicCode
|
||||||
|
content["extra"] = {}
|
||||||
if "pose" not in content:
|
if "pose" not in content:
|
||||||
content["pose"] = content.get("position", {})
|
content["pose"] = content.get("position", {})
|
||||||
return ResourceDictInstance(ResourceDict.model_validate(content))
|
return ResourceDictInstance(ResourceDict.model_validate(content))
|
||||||
@@ -311,28 +318,36 @@ class ResourceTreeSet(object):
|
|||||||
"plate": "plate",
|
"plate": "plate",
|
||||||
"well": "well",
|
"well": "well",
|
||||||
"deck": "deck",
|
"deck": "deck",
|
||||||
|
"tip_rack": "tip_rack",
|
||||||
|
"tip_spot": "tip_spot",
|
||||||
|
"tube": "tube",
|
||||||
|
"bottle_carrier": "bottle_carrier",
|
||||||
}
|
}
|
||||||
if source in replace_info:
|
if source in replace_info:
|
||||||
return replace_info[source]
|
return replace_info[source]
|
||||||
else:
|
else:
|
||||||
print("转换pylabrobot的时候,出现未知类型", source)
|
print("转换pylabrobot的时候,出现未知类型", source)
|
||||||
return "container"
|
return source
|
||||||
|
|
||||||
def build_uuid_mapping(res: "PLRResource", uuid_list: list):
|
def build_uuid_mapping(res: "PLRResource", uuid_list: list, parent_uuid: Optional[str] = None):
|
||||||
"""递归构建uuid映射字典"""
|
"""递归构建uuid和extra映射字典,返回(current_uuid, parent_uuid, extra)元组列表"""
|
||||||
uid = getattr(res, "unilabos_uuid", "")
|
uid = getattr(res, "unilabos_uuid", "")
|
||||||
if not uid:
|
if not uid:
|
||||||
uid = str(uuid.uuid4())
|
uid = str(uuid.uuid4())
|
||||||
res.unilabos_uuid = uid
|
res.unilabos_uuid = uid
|
||||||
logger.warning(f"{res}没有uuid,请设置后再传入,默认填充{uid}!\n{traceback.format_exc()}")
|
logger.warning(f"{res}没有uuid,请设置后再传入,默认填充{uid}!\n{traceback.format_exc()}")
|
||||||
uuid_list.append(uid)
|
|
||||||
|
# 获取unilabos_extra,默认为空字典
|
||||||
|
extra = getattr(res, "unilabos_extra", {})
|
||||||
|
|
||||||
|
uuid_list.append((uid, parent_uuid, extra))
|
||||||
for child in res.children:
|
for child in res.children:
|
||||||
build_uuid_mapping(child, uuid_list)
|
build_uuid_mapping(child, uuid_list, uid)
|
||||||
|
|
||||||
def resource_plr_inner(
|
def resource_plr_inner(
|
||||||
d: dict, parent_resource: Optional[ResourceDict], states: dict, uuids: list
|
d: dict, parent_resource: Optional[ResourceDict], states: dict, uuids: list
|
||||||
) -> ResourceDictInstance:
|
) -> ResourceDictInstance:
|
||||||
current_uuid = uuids.pop(0)
|
current_uuid, parent_uuid, extra = uuids.pop(0)
|
||||||
|
|
||||||
raw_pos = (
|
raw_pos = (
|
||||||
{"x": d["location"]["x"], "y": d["location"]["y"], "z": d["location"]["z"]}
|
{"x": d["location"]["x"], "y": d["location"]["y"], "z": d["location"]["z"]}
|
||||||
@@ -355,13 +370,30 @@ class ResourceTreeSet(object):
|
|||||||
"uuid": current_uuid,
|
"uuid": current_uuid,
|
||||||
"name": d["name"],
|
"name": d["name"],
|
||||||
"parent": parent_resource, # 直接传入 ResourceDict 对象
|
"parent": parent_resource, # 直接传入 ResourceDict 对象
|
||||||
|
"parent_uuid": parent_uuid, # 使用 parent_uuid 而不是 parent 对象
|
||||||
"type": replace_plr_type(d.get("category", "")),
|
"type": replace_plr_type(d.get("category", "")),
|
||||||
"class": d.get("class", ""),
|
"class": d.get("class", ""),
|
||||||
"position": pos,
|
"position": pos,
|
||||||
"pose": pos,
|
"pose": pos,
|
||||||
"config": {k: v for k, v in d.items() if k not in
|
"config": {
|
||||||
["name", "children", "parent_name", "location", "rotation", "size_x", "size_y", "size_z", "cross_section_type", "bottom_type"]},
|
k: v
|
||||||
|
for k, v in d.items()
|
||||||
|
if k
|
||||||
|
not in [
|
||||||
|
"name",
|
||||||
|
"children",
|
||||||
|
"parent_name",
|
||||||
|
"location",
|
||||||
|
"rotation",
|
||||||
|
"size_x",
|
||||||
|
"size_y",
|
||||||
|
"size_z",
|
||||||
|
"cross_section_type",
|
||||||
|
"bottom_type",
|
||||||
|
]
|
||||||
|
},
|
||||||
"data": states[d["name"]],
|
"data": states[d["name"]],
|
||||||
|
"extra": extra,
|
||||||
}
|
}
|
||||||
|
|
||||||
# 先转换为 ResourceDictInstance,获取其中的 ResourceDict
|
# 先转换为 ResourceDictInstance,获取其中的 ResourceDict
|
||||||
@@ -379,7 +411,7 @@ class ResourceTreeSet(object):
|
|||||||
for resource in resources:
|
for resource in resources:
|
||||||
# 构建uuid列表
|
# 构建uuid列表
|
||||||
uuid_list = []
|
uuid_list = []
|
||||||
build_uuid_mapping(resource, uuid_list)
|
build_uuid_mapping(resource, uuid_list, getattr(resource.parent, "unilabos_uuid", None))
|
||||||
|
|
||||||
serialized_data = resource.serialize()
|
serialized_data = resource.serialize()
|
||||||
all_states = resource.serialize_all_state()
|
all_states = resource.serialize_all_state()
|
||||||
@@ -402,14 +434,15 @@ class ResourceTreeSet(object):
|
|||||||
import inspect
|
import inspect
|
||||||
|
|
||||||
# 类型映射
|
# 类型映射
|
||||||
TYPE_MAP = {"plate": "Plate", "well": "Well", "deck": "Deck"}
|
TYPE_MAP = {"plate": "Plate", "well": "Well", "deck": "Deck", "container": "RegularContainer"}
|
||||||
|
|
||||||
def collect_node_data(node: ResourceDictInstance, name_to_uuid: dict, all_states: dict):
|
def collect_node_data(node: ResourceDictInstance, name_to_uuid: dict, all_states: dict, name_to_extra: dict):
|
||||||
"""一次遍历收集 name_to_uuid 和 all_states"""
|
"""一次遍历收集 name_to_uuid, all_states 和 name_to_extra"""
|
||||||
name_to_uuid[node.res_content.name] = node.res_content.uuid
|
name_to_uuid[node.res_content.name] = node.res_content.uuid
|
||||||
all_states[node.res_content.name] = node.res_content.data
|
all_states[node.res_content.name] = node.res_content.data
|
||||||
|
name_to_extra[node.res_content.name] = node.res_content.extra
|
||||||
for child in node.children:
|
for child in node.children:
|
||||||
collect_node_data(child, name_to_uuid, all_states)
|
collect_node_data(child, name_to_uuid, all_states, name_to_extra)
|
||||||
|
|
||||||
def node_to_plr_dict(node: ResourceDictInstance, has_model: bool):
|
def node_to_plr_dict(node: ResourceDictInstance, has_model: bool):
|
||||||
"""转换节点为 PLR 字典格式"""
|
"""转换节点为 PLR 字典格式"""
|
||||||
@@ -419,6 +452,7 @@ class ResourceTreeSet(object):
|
|||||||
logger.warning(f"未知类型 {res.type}")
|
logger.warning(f"未知类型 {res.type}")
|
||||||
|
|
||||||
d = {
|
d = {
|
||||||
|
**res.config,
|
||||||
"name": res.name,
|
"name": res.name,
|
||||||
"type": res.config.get("type", plr_type),
|
"type": res.config.get("type", plr_type),
|
||||||
"size_x": res.config.get("size_x", 0),
|
"size_x": res.config.get("size_x", 0),
|
||||||
@@ -434,33 +468,35 @@ class ResourceTreeSet(object):
|
|||||||
"category": res.config.get("category", plr_type),
|
"category": res.config.get("category", plr_type),
|
||||||
"children": [node_to_plr_dict(child, has_model) for child in node.children],
|
"children": [node_to_plr_dict(child, has_model) for child in node.children],
|
||||||
"parent_name": res.parent_instance_name,
|
"parent_name": res.parent_instance_name,
|
||||||
**res.config,
|
|
||||||
}
|
}
|
||||||
if has_model:
|
if has_model:
|
||||||
d["model"] = res.config.get("model", None)
|
d["model"] = res.config.get("model", None)
|
||||||
return d
|
return d
|
||||||
|
|
||||||
plr_resources = []
|
plr_resources = []
|
||||||
trees = []
|
|
||||||
tracker = DeviceNodeResourceTracker()
|
tracker = DeviceNodeResourceTracker()
|
||||||
|
|
||||||
for tree in self.trees:
|
for tree in self.trees:
|
||||||
name_to_uuid: Dict[str, str] = {}
|
name_to_uuid: Dict[str, str] = {}
|
||||||
all_states: Dict[str, Any] = {}
|
all_states: Dict[str, Any] = {}
|
||||||
collect_node_data(tree.root_node, name_to_uuid, all_states)
|
name_to_extra: Dict[str, dict] = {}
|
||||||
|
collect_node_data(tree.root_node, name_to_uuid, all_states, name_to_extra)
|
||||||
has_model = tree.root_node.res_content.type != "deck"
|
has_model = tree.root_node.res_content.type != "deck"
|
||||||
plr_dict = node_to_plr_dict(tree.root_node, has_model)
|
plr_dict = node_to_plr_dict(tree.root_node, has_model)
|
||||||
try:
|
try:
|
||||||
sub_cls = find_subclass(plr_dict["type"], PLRResource)
|
sub_cls = find_subclass(plr_dict["type"], PLRResource)
|
||||||
if sub_cls is None:
|
if sub_cls is None:
|
||||||
raise ValueError(f"无法找到类型 {plr_dict['type']} 对应的 PLR 资源类。原始信息:{tree.root_node.res_content}")
|
raise ValueError(
|
||||||
|
f"无法找到类型 {plr_dict['type']} 对应的 PLR 资源类。原始信息:{tree.root_node.res_content}"
|
||||||
|
)
|
||||||
spec = inspect.signature(sub_cls)
|
spec = inspect.signature(sub_cls)
|
||||||
if "category" not in spec.parameters:
|
if "category" not in spec.parameters:
|
||||||
plr_dict.pop("category", None)
|
plr_dict.pop("category", None)
|
||||||
plr_resource = sub_cls.deserialize(plr_dict, allow_marshal=True)
|
plr_resource = sub_cls.deserialize(plr_dict, allow_marshal=True)
|
||||||
plr_resource.load_all_state(all_states)
|
plr_resource.load_all_state(all_states)
|
||||||
# 使用 DeviceNodeResourceTracker 设置 UUID
|
# 使用 DeviceNodeResourceTracker 设置 UUID 和 Extra
|
||||||
tracker.loop_set_uuid(plr_resource, name_to_uuid)
|
tracker.loop_set_uuid(plr_resource, name_to_uuid)
|
||||||
|
tracker.loop_set_extra(plr_resource, name_to_extra)
|
||||||
plr_resources.append(plr_resource)
|
plr_resources.append(plr_resource)
|
||||||
|
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
@@ -802,6 +838,20 @@ class DeviceNodeResourceTracker(object):
|
|||||||
else:
|
else:
|
||||||
setattr(resource, "unilabos_uuid", new_uuid)
|
setattr(resource, "unilabos_uuid", new_uuid)
|
||||||
|
|
||||||
|
@staticmethod
|
||||||
|
def set_resource_extra(resource, extra: dict):
|
||||||
|
"""
|
||||||
|
设置资源的 extra,统一处理 dict 和 instance 两种类型
|
||||||
|
|
||||||
|
Args:
|
||||||
|
resource: 资源对象(dict或实例)
|
||||||
|
extra: extra字典值
|
||||||
|
"""
|
||||||
|
if isinstance(resource, dict):
|
||||||
|
resource["extra"] = extra
|
||||||
|
else:
|
||||||
|
setattr(resource, "unilabos_extra", extra)
|
||||||
|
|
||||||
def _traverse_and_process(self, resource, process_func) -> int:
|
def _traverse_and_process(self, resource, process_func) -> int:
|
||||||
"""
|
"""
|
||||||
递归遍历资源树,对每个节点执行处理函数
|
递归遍历资源树,对每个节点执行处理函数
|
||||||
@@ -850,6 +900,29 @@ class DeviceNodeResourceTracker(object):
|
|||||||
|
|
||||||
return self._traverse_and_process(resource, process)
|
return self._traverse_and_process(resource, process)
|
||||||
|
|
||||||
|
def loop_set_extra(self, resource, name_to_extra_map: Dict[str, dict]) -> int:
|
||||||
|
"""
|
||||||
|
递归遍历资源树,根据 name 设置所有节点的 extra
|
||||||
|
|
||||||
|
Args:
|
||||||
|
resource: 资源对象(可以是dict或实例)
|
||||||
|
name_to_extra_map: name到extra的映射字典,{name: extra}
|
||||||
|
|
||||||
|
Returns:
|
||||||
|
更新的资源数量
|
||||||
|
"""
|
||||||
|
|
||||||
|
def process(res):
|
||||||
|
resource_name = self._get_resource_attr(res, "name")
|
||||||
|
if resource_name and resource_name in name_to_extra_map:
|
||||||
|
extra = name_to_extra_map[resource_name]
|
||||||
|
self.set_resource_extra(res, extra)
|
||||||
|
logger.debug(f"设置资源Extra: {resource_name} -> {extra}")
|
||||||
|
return 1
|
||||||
|
return 0
|
||||||
|
|
||||||
|
return self._traverse_and_process(resource, process)
|
||||||
|
|
||||||
def loop_update_uuid(self, resource, uuid_map: Dict[str, str]) -> int:
|
def loop_update_uuid(self, resource, uuid_map: Dict[str, str]) -> int:
|
||||||
"""
|
"""
|
||||||
递归遍历资源树,更新所有节点的uuid
|
递归遍历资源树,更新所有节点的uuid
|
||||||
@@ -892,7 +965,9 @@ class DeviceNodeResourceTracker(object):
|
|||||||
if current_uuid:
|
if current_uuid:
|
||||||
old = self.uuid_to_resources.get(current_uuid)
|
old = self.uuid_to_resources.get(current_uuid)
|
||||||
self.uuid_to_resources[current_uuid] = res
|
self.uuid_to_resources[current_uuid] = res
|
||||||
logger.debug(f"收集资源UUID映射: {current_uuid} -> {res} {'' if old is None else f'(覆盖旧值: {old})'}")
|
logger.debug(
|
||||||
|
f"收集资源UUID映射: {current_uuid} -> {res} {'' if old is None else f'(覆盖旧值: {old})'}"
|
||||||
|
)
|
||||||
return 0
|
return 0
|
||||||
|
|
||||||
self._traverse_and_process(resource, process)
|
self._traverse_and_process(resource, process)
|
||||||
|
|||||||
Reference in New Issue
Block a user