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Device Visualization & Mock Devices (#44) [37-biomek-i5i7 (#40), Device visualization (#39), Add Mock Device for Organic Synthesis\添加有机合成的虚拟仪器和Protocol (#43)]
* add biomek.py demo implementation * 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。 * Test * fix biomek success type * Convert LH action to biomek. * Update biomek.py * 注册表上报handle和schema (param input) * 修复biomek缺少的字段 * delete 's' * Remove warnings * Update biomek.py * Biomek test * Update biomek.py * 新增transfer_biomek的msg * New transfer_biomek * Updated transfer_biomek * 更新transfer_biomek的msg * 更新transfer_biomek的msg * 支持Biomek创建 * new action * fix key name typo * New parameter for biomek to run. * Refine * Update * new actions * new actions * 1 * registry * fix biomek startup add action handles * fix handles not as default entry * biomek_test.py biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json * Update biomek.py * biomek_test.py * fix liquid_handler.biomek handles * host node新增resource add时间统计 create_resource新增handle bump version to 0.9.2 * 修正物料上传时间 改用biomek_test 增加ResultInfoEncoder 支持返回结果上传 * 正确发送return_info结果 * 同步执行状态信息 * 取消raiseValueError提示 * Update biomek_test.py * 0608 DONE * 同步了Biomek.py 现在应可用 * biomek switch back to non-test * temp disable initialize resource * 37-biomek-i5i7 (#40) * add biomek.py demo implementation * 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。 * Test * fix biomek success type * Convert LH action to biomek. * Update biomek.py * 注册表上报handle和schema (param input) * 修复biomek缺少的字段 * delete 's' * Remove warnings * Update biomek.py * Biomek test * Update biomek.py * 新增transfer_biomek的msg * New transfer_biomek * Updated transfer_biomek * 更新transfer_biomek的msg * 更新transfer_biomek的msg * 支持Biomek创建 * new action * fix key name typo * New parameter for biomek to run. * Refine * Update * new actions * new actions * 1 * registry * fix biomek startup add action handles * fix handles not as default entry * biomek_test.py biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json * Update biomek.py * biomek_test.py * fix liquid_handler.biomek handles * host node新增resource add时间统计 create_resource新增handle bump version to 0.9.2 * 修正物料上传时间 改用biomek_test 增加ResultInfoEncoder 支持返回结果上传 * 正确发送return_info结果 * 同步执行状态信息 * 取消raiseValueError提示 * Update biomek_test.py * 0608 DONE * 同步了Biomek.py 现在应可用 * biomek switch back to non-test * temp disable initialize resource * Refine biomek * Refine copy issue * Refine --------- Co-authored-by: Junhan Chang <changjh@pku.edu.cn> Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com> Co-authored-by: qxw138 <qxw@stu.pku.edu.cn> * Device visualization (#39) * Update README and MQTTClient for installation instructions and code improvements * feat: 支持local_config启动 add: 增加对crt path的说明,为传入config.py的相对路径 move: web component * add: registry description * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * feat: node_info_update srv fix: OTDeck cant create * close #12 feat: slave node registry * feat: show machine name fix: host node registry not uploaded * feat: add hplc registry * feat: add hplc registry * fix: hplc status typo * fix: devices/ * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * fix: device.class possible null * fix: HPLC additions with online service * fix: slave mode spin not working * fix: slave mode spin not working * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * feat: 多ProtocolNode 允许子设备ID相同 feat: 上报发现的ActionClient feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报 * feat: 支持env设置config * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * Device visualization (#14) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: missing hostname in devices_names fix: upload_file for model file * fix: missing paho-mqtt package bump version to 0.9.0 * fix startup add ResourceCreateFromOuter.action * fix type hint * update actions * update actions * host node add_resource_from_outer fix cmake list * pass device config to device class * add: bind_parent_ids to resource create action fix: message convert string * fix: host node should not be re_discovered * feat: resource tracker support dict * feat: add more necessary params * feat: fix boolean null in registry action data * feat: add outer resource * 编写mesh添加action * feat: append resource * add action * feat: vis 2d for plr * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate * Device visualization (#22) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * 编写mesh添加action * add action * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: multi channel * fix: aspirate * fix: aspirate * fix: aspirate * fix: aspirate * 提交 * fix: jobadd * fix: jobadd * fix: msg converter * tijiao * add resource creat easy action * identify debug msg * mq client id * 提取lh的joint发布 * unify liquid_handler definition * 修改物料跟随与物料添加逻辑 修改物料跟随与物料添加逻辑 将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写 * Revert "修改物料跟随与物料添加逻辑" This reverts commit498c997ad7. * Reapply "修改物料跟随与物料添加逻辑" This reverts commit3a60d2ae81. * Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization" This reverts commitfa727220af, reversing changes made to498c997ad7. * 修改物料放下时的方法,如果选择 修改物料放下时的方法, 如果选择drop_trash,则删除物料显示 如果选择drop,则让其解除连接 * add biomek.py demo implementation * 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。 * Test * fix biomek success type * Convert LH action to biomek. * Update biomek.py * 注册表上报handle和schema (param input) * 修复biomek缺少的字段 * delete 's' * Remove warnings * Update biomek.py * Biomek test * Update biomek.py * 新增transfer_biomek的msg * New transfer_biomek * Updated transfer_biomek * 更新transfer_biomek的msg * 更新transfer_biomek的msg * 支持Biomek创建 * new action * fix key name typo * New parameter for biomek to run. * Refine * Update * new actions * new actions * 1 * registry * fix biomek startup add action handles * fix handles not as default entry * unilab添加moveit启动 1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活 2,添加pymoveit2的节点,使用json可直接启动 3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动 * biomek_test.py biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json * Update biomek.py * biomek_test.py * fix liquid_handler.biomek handles * 修改物体attach时,多次赋值当前时间导致卡顿问题, * Revert "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit56d45b94f5. * Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit07d9db20c3. * 添加缺少物料:"plate_well_G12", * host node新增resource add时间统计 create_resource新增handle bump version to 0.9.2 * 修正物料上传时间 改用biomek_test 增加ResultInfoEncoder 支持返回结果上传 * 正确发送return_info结果 * 同步执行状态信息 * 取消raiseValueError提示 * Update biomek_test.py * 0608 DONE * 同步了Biomek.py 现在应可用 * biomek switch back to non-test * temp disable initialize resource * add * fix tip resource data * liquid states * change to debug level * Revert "change to debug level" This reverts commit5d9953c3e5. * Reapply "change to debug level" This reverts commit2487bb6ffc. * fix tip resource data * add full device * add moveit yaml * 修复moveit 增加post_init阶段,给予ros_node反向 * remove necessary node * fix moveit action client * remove necessary imports * Update moveit_interface.py * fix handler_key uppercase * json add liquids * fix setup * add * change to "sources" and "targets" for lh * bump version * remove parent's parent link --------- Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: Junhan Chang <changjh@pku.edu.cn> Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com> Co-authored-by: qxw138 <qxw@stu.pku.edu.cn> * Device visualization (#41) * Update README and MQTTClient for installation instructions and code improvements * feat: 支持local_config启动 add: 增加对crt path的说明,为传入config.py的相对路径 move: web component * add: registry description * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * feat: node_info_update srv fix: OTDeck cant create * close #12 feat: slave node registry * feat: show machine name fix: host node registry not uploaded * feat: add hplc registry * feat: add hplc registry * fix: hplc status typo * fix: devices/ * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * fix: device.class possible null * fix: HPLC additions with online service * fix: slave mode spin not working * fix: slave mode spin not working * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * feat: 多ProtocolNode 允许子设备ID相同 feat: 上报发现的ActionClient feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报 * feat: 支持env设置config * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * Device visualization (#14) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: missing hostname in devices_names fix: upload_file for model file * fix: missing paho-mqtt package bump version to 0.9.0 * fix startup add ResourceCreateFromOuter.action * fix type hint * update actions * update actions * host node add_resource_from_outer fix cmake list * pass device config to device class * add: bind_parent_ids to resource create action fix: message convert string * fix: host node should not be re_discovered * feat: resource tracker support dict * feat: add more necessary params * feat: fix boolean null in registry action data * feat: add outer resource * 编写mesh添加action * feat: append resource * add action * feat: vis 2d for plr * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate * Device visualization (#22) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * 编写mesh添加action * add action * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: multi channel * fix: aspirate * fix: aspirate * fix: aspirate * fix: aspirate * 提交 * fix: jobadd * fix: jobadd * fix: msg converter * tijiao * add resource creat easy action * identify debug msg * mq client id * 提取lh的joint发布 * unify liquid_handler definition * 修改物料跟随与物料添加逻辑 修改物料跟随与物料添加逻辑 将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写 * Revert "修改物料跟随与物料添加逻辑" This reverts commit498c997ad7. * Reapply "修改物料跟随与物料添加逻辑" This reverts commit3a60d2ae81. * Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization" This reverts commitfa727220af, reversing changes made to498c997ad7. * 修改物料放下时的方法,如果选择 修改物料放下时的方法, 如果选择drop_trash,则删除物料显示 如果选择drop,则让其解除连接 * add biomek.py demo implementation * 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。 * Test * fix biomek success type * Convert LH action to biomek. * Update biomek.py * 注册表上报handle和schema (param input) * 修复biomek缺少的字段 * delete 's' * Remove warnings * Update biomek.py * Biomek test * Update biomek.py * 新增transfer_biomek的msg * New transfer_biomek * Updated transfer_biomek * 更新transfer_biomek的msg * 更新transfer_biomek的msg * 支持Biomek创建 * new action * fix key name typo * New parameter for biomek to run. * Refine * Update * new actions * new actions * 1 * registry * fix biomek startup add action handles * fix handles not as default entry * unilab添加moveit启动 1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活 2,添加pymoveit2的节点,使用json可直接启动 3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动 * biomek_test.py biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json * Update biomek.py * biomek_test.py * fix liquid_handler.biomek handles * 修改物体attach时,多次赋值当前时间导致卡顿问题, * Revert "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit56d45b94f5. * Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit07d9db20c3. * 添加缺少物料:"plate_well_G12", * host node新增resource add时间统计 create_resource新增handle bump version to 0.9.2 * 修正物料上传时间 改用biomek_test 增加ResultInfoEncoder 支持返回结果上传 * 正确发送return_info结果 * 同步执行状态信息 * 取消raiseValueError提示 * Update biomek_test.py * 0608 DONE * 同步了Biomek.py 现在应可用 * biomek switch back to non-test * temp disable initialize resource * add * fix tip resource data * liquid states * change to debug level * Revert "change to debug level" This reverts commit5d9953c3e5. * Reapply "change to debug level" This reverts commit2487bb6ffc. * fix tip resource data * add full device * add moveit yaml * 修复moveit 增加post_init阶段,给予ros_node反向 * remove necessary node * fix moveit action client * remove necessary imports * Update moveit_interface.py * fix handler_key uppercase * json add liquids * fix setup * add * change to "sources" and "targets" for lh * bump version * remove parent's parent link * change arm's name * change name --------- Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com> Co-authored-by: Junhan Chang <changjh@pku.edu.cn> Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com> Co-authored-by: qxw138 <qxw@stu.pku.edu.cn> * fix move it * fix move it * create_resource * bump ver modify slot type * 增加modbus支持 调整protocol node以更好支持多种类型的read和write * 调整protocol node以更好支持多种类型的read和write * 补充日志 * Device visualization (#42) * Update README and MQTTClient for installation instructions and code improvements * feat: 支持local_config启动 add: 增加对crt path的说明,为传入config.py的相对路径 move: web component * add: registry description * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * feat: node_info_update srv fix: OTDeck cant create * close #12 feat: slave node registry * feat: show machine name fix: host node registry not uploaded * feat: add hplc registry * feat: add hplc registry * fix: hplc status typo * fix: devices/ * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * fix: device.class possible null * fix: HPLC additions with online service * fix: slave mode spin not working * fix: slave mode spin not working * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * feat: 多ProtocolNode 允许子设备ID相同 feat: 上报发现的ActionClient feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报 * feat: 支持env设置config * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * Device visualization (#14) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: missing hostname in devices_names fix: upload_file for model file * fix: missing paho-mqtt package bump version to 0.9.0 * fix startup add ResourceCreateFromOuter.action * fix type hint * update actions * update actions * host node add_resource_from_outer fix cmake list * pass device config to device class * add: bind_parent_ids to resource create action fix: message convert string * fix: host node should not be re_discovered * feat: resource tracker support dict * feat: add more necessary params * feat: fix boolean null in registry action data * feat: add outer resource * 编写mesh添加action * feat: append resource * add action * feat: vis 2d for plr * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate * Device visualization (#22) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * 编写mesh添加action * add action * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: multi channel * fix: aspirate * fix: aspirate * fix: aspirate * fix: aspirate * 提交 * fix: jobadd * fix: jobadd * fix: msg converter * tijiao * add resource creat easy action * identify debug msg * mq client id * 提取lh的joint发布 * unify liquid_handler definition * 修改物料跟随与物料添加逻辑 修改物料跟随与物料添加逻辑 将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写 * Revert "修改物料跟随与物料添加逻辑" This reverts commit498c997ad7. * Reapply "修改物料跟随与物料添加逻辑" This reverts commit3a60d2ae81. * Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization" This reverts commitfa727220af, reversing changes made to498c997ad7. * 修改物料放下时的方法,如果选择 修改物料放下时的方法, 如果选择drop_trash,则删除物料显示 如果选择drop,则让其解除连接 * unilab添加moveit启动 1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活 2,添加pymoveit2的节点,使用json可直接启动 3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动 * 修改物体attach时,多次赋值当前时间导致卡顿问题, * Revert "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit56d45b94f5. * Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit07d9db20c3. * 添加缺少物料:"plate_well_G12", * add * fix tip resource data * liquid states * change to debug level * Revert "change to debug level" This reverts commit5d9953c3e5. * Reapply "change to debug level" This reverts commit2487bb6ffc. * fix tip resource data * add full device * add moveit yaml * 修复moveit 增加post_init阶段,给予ros_node反向 * remove necessary node * fix moveit action client * remove necessary imports * Update moveit_interface.py * fix handler_key uppercase * json add liquids * fix setup * add * change to "sources" and "targets" for lh * bump version * remove parent's parent link * change arm's name * change name * fix ik error --------- Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com> Co-authored-by: Junhan Chang <changjh@pku.edu.cn> * Add Mock Device for Organic Synthesis\添加有机合成的虚拟仪器和Protocol (#43) * Add Device MockChiller Add device MockChiller * Add Device MockFilter * Add Device MockPump * Add Device MockRotavap * Add Device MockSeparator * Add Device MockStirrer * Add Device MockHeater * Add Device MockVacuum * Add Device MockSolenoidValve * Add Device Mock \_init_.py * 规范模拟设备代码与注册表信息 * 更改Mock大写文件夹名 * 删除大写目录 * Edited Mock device json * Match mock device with action * Edit mock device yaml * Add new action * Add Virtual Device, Action, YAML, Protocol for Organic Syn * 单独分类测试的protocol文件夹 * 更名Action --------- Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com> --------- Co-authored-by: Junhan Chang <changjh@pku.edu.cn> Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com> Co-authored-by: qxw138 <qxw@stu.pku.edu.cn> Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com> Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: Kongchang Feng <2100011801@stu.pku.edu.cn>
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unilabos/devices/liquid_handling/biomek.py
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unilabos/devices/liquid_handling/biomek.py
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unilabos/devices/liquid_handling/biomek.txt
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unilabos/devices/liquid_handling/biomek.txt
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unilabos/devices/liquid_handling/biomek_temporary_protocol.json
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unilabos/devices/liquid_handling/biomek_temporary_protocol.json
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unilabos/devices/liquid_handling/biomek_test.py
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unilabos/devices/liquid_handling/biomek_test.py
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unilabos/devices/liquid_handling/complete_biomek_protocol.json
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unilabos/devices/liquid_handling/complete_biomek_protocol.json
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unilabos/devices/liquid_handling/complete_biomek_protocol_0608.json
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unilabos/devices/liquid_handling/complete_biomek_protocol_0608.json
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@@ -6,13 +6,8 @@ import asyncio
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import time
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from pylabrobot.liquid_handling import LiquidHandler
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from pylabrobot.resources import (
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Resource,
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TipRack,
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Container,
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Coordinate,
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Well
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)
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from pylabrobot.resources import Resource, TipRack, Container, Coordinate, Well
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class LiquidHandlerAbstract(LiquidHandler):
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"""Extended LiquidHandler with additional operations."""
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@@ -21,6 +16,19 @@ class LiquidHandlerAbstract(LiquidHandler):
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# REMOVE LIQUID --------------------------------------------------
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# ---------------------------------------------------------------
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async def create_protocol(
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self,
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protocol_name: str,
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protocol_description: str,
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protocol_version: str,
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protocol_author: str,
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protocol_date: str,
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protocol_type: str,
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none_keys: List[str] = [],
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):
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"""Create a new protocol with the given metadata."""
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pass
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async def remove_liquid(
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self,
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vols: List[float],
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@@ -35,26 +43,26 @@ class LiquidHandlerAbstract(LiquidHandler):
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spread: Optional[Literal["wide", "tight", "custom"]] = "wide",
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delays: Optional[List[int]] = None,
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is_96_well: Optional[bool] = False,
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top: Optional[List(float)] = None,
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none_keys: List[str] = []
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top: Optional[List[float]] = None,
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none_keys: List[str] = [],
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):
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"""A complete *remove* (aspirate → waste) operation."""
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trash = self.deck.get_trash_area()
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try:
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if is_96_well:
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pass # This mode is not verified
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pass # This mode is not verified
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else:
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if len(vols) != len(sources):
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raise ValueError("Length of `vols` must match `sources`.")
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for src, vol in zip(sources, vols):
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self.move_to(src, dis_to_top=top[0] if top else 0)
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await self.move_to(src, dis_to_top=top[0] if top else 0)
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tip = next(self.current_tip)
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await self.pick_up_tips(tip)
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await self.aspirate(
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resources=[src],
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vols=[vol],
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use_channels=use_channels, # only aspirate96 used, default to None
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use_channels=use_channels, # only aspirate96 used, default to None
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flow_rates=[flow_rates[0]] if flow_rates else None,
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offsets=[offsets[0]] if offsets else None,
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liquid_height=[liquid_height[0]] if liquid_height else None,
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@@ -64,15 +72,15 @@ class LiquidHandlerAbstract(LiquidHandler):
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await self.custom_delay(seconds=delays[0] if delays else 0)
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await self.dispense(
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resources=waste_liquid,
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vols=[vol],
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use_channels=use_channels,
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flow_rates=[flow_rates[1]] if flow_rates else None,
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offsets=[offsets[1]] if offsets else None,
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liquid_height=[liquid_height[1]] if liquid_height else None,
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blow_out_air_volume=blow_out_air_volume[1] if blow_out_air_volume else None,
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spread=spread,
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)
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await self.discard_tips() # For now, each of tips is discarded after use
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vols=[vol],
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use_channels=use_channels,
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flow_rates=[flow_rates[1]] if flow_rates else None,
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offsets=[offsets[1]] if offsets else None,
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liquid_height=[liquid_height[1]] if liquid_height else None,
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blow_out_air_volume=blow_out_air_volume[1] if blow_out_air_volume else None,
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spread=spread,
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)
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await self.discard_tips() # For now, each of tips is discarded after use
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except Exception as e:
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raise RuntimeError(f"Liquid removal failed: {e}") from e
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@@ -100,13 +108,13 @@ class LiquidHandlerAbstract(LiquidHandler):
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mix_vol: Optional[int] = None,
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mix_rate: Optional[int] = None,
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mix_liquid_height: Optional[float] = None,
|
||||
none_keys: List[str] = []
|
||||
none_keys: List[str] = [],
|
||||
):
|
||||
"""A complete *add* (aspirate reagent → dispense into targets) operation."""
|
||||
|
||||
try:
|
||||
if is_96_well:
|
||||
pass # This mode is not verified.
|
||||
pass # This mode is not verified.
|
||||
else:
|
||||
if len(asp_vols) != len(targets):
|
||||
raise ValueError("Length of `vols` must match `targets`.")
|
||||
@@ -122,7 +130,7 @@ class LiquidHandlerAbstract(LiquidHandler):
|
||||
offsets=[offsets[0]] if offsets else None,
|
||||
liquid_height=[liquid_height[0]] if liquid_height else None,
|
||||
blow_out_air_volume=[blow_out_air_volume[0]] if blow_out_air_volume else None,
|
||||
spread=spread
|
||||
spread=spread,
|
||||
)
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[0])
|
||||
@@ -144,7 +152,8 @@ class LiquidHandlerAbstract(LiquidHandler):
|
||||
mix_vol=mix_vol,
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None)
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
await self.touch_tip(targets[_])
|
||||
@@ -158,13 +167,13 @@ class LiquidHandlerAbstract(LiquidHandler):
|
||||
# ---------------------------------------------------------------
|
||||
async def transfer_liquid(
|
||||
self,
|
||||
asp_vols: Union[List[float], float],
|
||||
dis_vols: Union[List[float], float],
|
||||
sources: Sequence[Container],
|
||||
targets: Sequence[Container],
|
||||
tip_racks: Sequence[TipRack],
|
||||
*,
|
||||
use_channels: Optional[List[int]] = None,
|
||||
asp_vols: Union[List[float], float],
|
||||
dis_vols: Union[List[float], float],
|
||||
asp_flow_rates: Optional[List[Optional[float]]] = None,
|
||||
dis_flow_rates: Optional[List[Optional[float]]] = None,
|
||||
offsets: Optional[List[Coordinate]] = None,
|
||||
@@ -179,7 +188,7 @@ class LiquidHandlerAbstract(LiquidHandler):
|
||||
mix_rate: Optional[int] = None,
|
||||
mix_liquid_height: Optional[float] = None,
|
||||
delays: Optional[List[int]] = None,
|
||||
none_keys: List[str] = []
|
||||
none_keys: List[str] = [],
|
||||
):
|
||||
"""Transfer liquid from each *source* well/plate to the corresponding *target*.
|
||||
|
||||
@@ -201,14 +210,15 @@ class LiquidHandlerAbstract(LiquidHandler):
|
||||
# 96‑channel head mode
|
||||
# ------------------------------------------------------------------
|
||||
if is_96_well:
|
||||
pass # This mode is not verified
|
||||
pass # This mode is not verified
|
||||
else:
|
||||
if not (len(asp_vols) == len(sources) and len(dis_vols) == len(targets)):
|
||||
raise ValueError("`sources`, `targets`, and `vols` must have the same length.")
|
||||
|
||||
tip_iter = self.iter_tips(tip_racks)
|
||||
for src, tgt, asp_vol, asp_flow_rate, dis_vol, dis_flow_rate in (
|
||||
zip(sources, targets, asp_vols, asp_flow_rates, dis_vols, dis_flow_rates)):
|
||||
for src, tgt, asp_vol, asp_flow_rate, dis_vol, dis_flow_rate in zip(
|
||||
sources, targets, asp_vols, asp_flow_rates, dis_vols, dis_flow_rates
|
||||
):
|
||||
tip = next(tip_iter)
|
||||
await self.pick_up_tips(tip)
|
||||
# Aspirate from source
|
||||
@@ -247,9 +257,9 @@ class LiquidHandlerAbstract(LiquidHandler):
|
||||
except Exception as exc:
|
||||
raise RuntimeError(f"Liquid transfer failed: {exc}") from exc
|
||||
|
||||
# ---------------------------------------------------------------
|
||||
# Helper utilities
|
||||
# ---------------------------------------------------------------
|
||||
# ---------------------------------------------------------------
|
||||
# Helper utilities
|
||||
# ---------------------------------------------------------------
|
||||
|
||||
async def custom_delay(self, seconds=0, msg=None):
|
||||
"""
|
||||
@@ -266,28 +276,26 @@ class LiquidHandlerAbstract(LiquidHandler):
|
||||
print(f"Done: {msg}")
|
||||
print(f"Current time: {time.strftime('%H:%M:%S')}")
|
||||
|
||||
async def touch_tip(self,
|
||||
targets: Sequence[Container],
|
||||
):
|
||||
async def touch_tip(self, targets: Sequence[Container]):
|
||||
"""Touch the tip to the side of the well."""
|
||||
await self.aspirate(
|
||||
resources=[targets],
|
||||
vols=[0],
|
||||
use_channels=None,
|
||||
flow_rates=None,
|
||||
offsets=[Coordinate(x=-targets.get_size_x()/2,y=0,z=0)],
|
||||
offsets=[Coordinate(x=-targets.get_size_x() / 2, y=0, z=0)],
|
||||
liquid_height=None,
|
||||
blow_out_air_volume=None
|
||||
blow_out_air_volume=None,
|
||||
)
|
||||
#await self.custom_delay(seconds=1) # In the simulation, we do not need to wait
|
||||
# await self.custom_delay(seconds=1) # In the simulation, we do not need to wait
|
||||
await self.aspirate(
|
||||
resources=[targets],
|
||||
vols=[0],
|
||||
use_channels=None,
|
||||
flow_rates=None,
|
||||
offsets=[Coordinate(x=targets.get_size_x()/2,y=0,z=0)],
|
||||
offsets=[Coordinate(x=targets.get_size_x() / 2, y=0, z=0)],
|
||||
liquid_height=None,
|
||||
blow_out_air_volume=None
|
||||
blow_out_air_volume=None,
|
||||
)
|
||||
|
||||
async def mix(
|
||||
@@ -298,9 +306,9 @@ class LiquidHandlerAbstract(LiquidHandler):
|
||||
height_to_bottom: Optional[float] = None,
|
||||
offsets: Optional[Coordinate] = None,
|
||||
mix_rate: Optional[float] = None,
|
||||
none_keys: List[str] = []
|
||||
none_keys: List[str] = [],
|
||||
):
|
||||
if mix_time is None: # No mixing required
|
||||
if mix_time is None: # No mixing required
|
||||
return
|
||||
"""Mix the liquid in the target wells."""
|
||||
for _ in range(mix_time):
|
||||
@@ -333,7 +341,7 @@ class LiquidHandlerAbstract(LiquidHandler):
|
||||
tip_iter = self.iter_tips(tip_racks)
|
||||
self.current_tip = tip_iter
|
||||
|
||||
async def move_to(self, well: Well, dis_to_top: float = 0 , channel: int = 0):
|
||||
async def move_to(self, well: Well, dis_to_top: float = 0, channel: int = 0):
|
||||
"""
|
||||
Move a single channel to a specific well with a given z-height.
|
||||
|
||||
@@ -352,4 +360,3 @@ class LiquidHandlerAbstract(LiquidHandler):
|
||||
await self.move_channel_x(channel, abs_loc.x)
|
||||
await self.move_channel_y(channel, abs_loc.y)
|
||||
await self.move_channel_z(channel, abs_loc.z + well_height + dis_to_top)
|
||||
|
||||
|
||||
@@ -0,0 +1,154 @@
|
||||
|
||||
import json
|
||||
from typing import Sequence, Optional, List, Union, Literal
|
||||
json_path = "/Users/guangxinzhang/Documents/Deep Potential/opentrons/convert/protocols/enriched_steps/sci-lucif-assay4.json"
|
||||
|
||||
with open(json_path, "r") as f:
|
||||
data = json.load(f)
|
||||
|
||||
transfer_example = data[0]
|
||||
#print(transfer_example)
|
||||
|
||||
|
||||
temp_protocol = []
|
||||
TipLocation = "BC1025F" # Assuming this is a fixed tip location for the transfer
|
||||
sources = transfer_example["sources"] # Assuming sources is a list of Container objects
|
||||
targets = transfer_example["targets"] # Assuming targets is a list of Container objects
|
||||
tip_racks = transfer_example["tip_racks"] # Assuming tip_racks is a list of TipRack objects
|
||||
asp_vols = transfer_example["asp_vols"] # Assuming asp_vols is a list of volumes
|
||||
solvent = "PBS"
|
||||
|
||||
def transfer_liquid(
|
||||
#self,
|
||||
sources,#: Sequence[Container],
|
||||
targets,#: Sequence[Container],
|
||||
tip_racks,#: Sequence[TipRack],
|
||||
TipLocation,
|
||||
# *,
|
||||
# use_channels: Optional[List[int]] = None,
|
||||
asp_vols: Union[List[float], float],
|
||||
solvent: Optional[str] = None,
|
||||
# dis_vols: Union[List[float], float],
|
||||
# asp_flow_rates: Optional[List[Optional[float]]] = None,
|
||||
# dis_flow_rates: Optional[List[Optional[float]]] = None,
|
||||
# offsets,#: Optional[List[]] = None,
|
||||
# touch_tip: bool = False,
|
||||
# liquid_height: Optional[List[Optional[float]]] = None,
|
||||
# blow_out_air_volume: Optional[List[Optional[float]]] = None,
|
||||
# spread: Literal["wide", "tight", "custom"] = "wide",
|
||||
# is_96_well: bool = False,
|
||||
# mix_stage: Optional[Literal["none", "before", "after", "both"]] = "none",
|
||||
# mix_times,#: Optional[list() = None,
|
||||
# mix_vol: Optional[int] = None,
|
||||
# mix_rate: Optional[int] = None,
|
||||
# mix_liquid_height: Optional[float] = None,
|
||||
# delays: Optional[List[int]] = None,
|
||||
# none_keys: List[str] = []
|
||||
):
|
||||
# -------- Build Biomek transfer step --------
|
||||
# 1) Construct default parameter scaffold (values mirror Biomek “Transfer” block).
|
||||
|
||||
transfer_params = {
|
||||
"Span8": False,
|
||||
"Pod": "Pod1",
|
||||
"items": {}, # to be filled below
|
||||
"Wash": False,
|
||||
"Dynamic?": True,
|
||||
"AutoSelectActiveWashTechnique": False,
|
||||
"ActiveWashTechnique": "",
|
||||
"ChangeTipsBetweenDests": False,
|
||||
"ChangeTipsBetweenSources": False,
|
||||
"DefaultCaption": "", # filled after we know first pair/vol
|
||||
"UseExpression": False,
|
||||
"LeaveTipsOn": False,
|
||||
"MandrelExpression": "",
|
||||
"Repeats": "1",
|
||||
"RepeatsByVolume": False,
|
||||
"Replicates": "1",
|
||||
"ShowTipHandlingDetails": False,
|
||||
"ShowTransferDetails": True,
|
||||
"Solvent": "Water",
|
||||
"Span8Wash": False,
|
||||
"Span8WashVolume": "2",
|
||||
"Span8WasteVolume": "1",
|
||||
"SplitVolume": False,
|
||||
"SplitVolumeCleaning": False,
|
||||
"Stop": "Destinations",
|
||||
"TipLocation": "BC1025F",
|
||||
"UseCurrentTips": False,
|
||||
"UseDisposableTips": True,
|
||||
"UseFixedTips": False,
|
||||
"UseJIT": True,
|
||||
"UseMandrelSelection": True,
|
||||
"UseProbes": [True, True, True, True, True, True, True, True],
|
||||
"WashCycles": "1",
|
||||
"WashVolume": "110%",
|
||||
"Wizard": False
|
||||
}
|
||||
|
||||
items: dict = {}
|
||||
for idx, (src, dst) in enumerate(zip(sources, targets)):
|
||||
items[str(idx)] = {
|
||||
"Source": str(src),
|
||||
"Destination": str(dst),
|
||||
"Volume": asp_vols[idx]
|
||||
}
|
||||
transfer_params["items"] = items
|
||||
transfer_params["Solvent"] = solvent if solvent else "Water"
|
||||
transfer_params["TipLocation"] = TipLocation
|
||||
|
||||
if len(tip_racks) == 1:
|
||||
transfer_params['UseCurrentTips'] = True
|
||||
elif len(tip_racks) > 1:
|
||||
transfer_params["ChangeTipsBetweenDests"] = True
|
||||
|
||||
return transfer_params
|
||||
|
||||
action = transfer_liquid(sources=sources,targets=targets,tip_racks=tip_racks, asp_vols=asp_vols,solvent = solvent, TipLocation=TipLocation)
|
||||
print(json.dumps(action,indent=2))
|
||||
# print(action)
|
||||
|
||||
|
||||
|
||||
|
||||
"""
|
||||
"transfer": {
|
||||
|
||||
"items": {},
|
||||
"Wash": false,
|
||||
"Dynamic?": true,
|
||||
"AutoSelectActiveWashTechnique": false,
|
||||
"ActiveWashTechnique": "",
|
||||
"ChangeTipsBetweenDests": true,
|
||||
"ChangeTipsBetweenSources": false,
|
||||
"DefaultCaption": "Transfer 100 µL from P13 to P3",
|
||||
"UseExpression": false,
|
||||
"LeaveTipsOn": false,
|
||||
"MandrelExpression": "",
|
||||
"Repeats": "1",
|
||||
"RepeatsByVolume": false,
|
||||
"Replicates": "1",
|
||||
"ShowTipHandlingDetails": true,
|
||||
"ShowTransferDetails": true,
|
||||
|
||||
"Span8Wash": false,
|
||||
"Span8WashVolume": "2",
|
||||
"Span8WasteVolume": "1",
|
||||
"SplitVolume": false,
|
||||
"SplitVolumeCleaning": false,
|
||||
"Stop": "Destinations",
|
||||
"TipLocation": "BC1025F",
|
||||
"UseCurrentTips": false,
|
||||
"UseDisposableTips": false,
|
||||
"UseFixedTips": false,
|
||||
"UseJIT": true,
|
||||
"UseMandrelSelection": true,
|
||||
"UseProbes": [true, true, true, true, true, true, true, true],
|
||||
"WashCycles": "3",
|
||||
"WashVolume": "110%",
|
||||
"Wizard": false
|
||||
"""
|
||||
|
||||
|
||||
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
Reference in New Issue
Block a user