Fix workstation startup

Update registry

unilabos/devices/workstation/bioyond_studio/config.py

@@ -134,3 +134,5 @@ WORKFLOW_STEP_IDS = {
         "observe": ""
     }
 }
+
+LOCATION_MAPPING = {}

unilabos/registry/devices/bioyond.yaml

@@ -54,7 +54,7 @@ workstation.bioyond_dispensing_station:
           percent_90_3_target_weigh: ''
           speed: ''
           temperature: ''
-        handles: []
+        handles: {}
         result:
           return_info: return_info
         schema:
@@ -174,7 +174,7 @@ workstation.bioyond_dispensing_station:
           target_weigh: ''
           temperature: ''
           volume: ''
-        handles: []
+        handles: {}
         result:
           return_info: return_info
         schema:
@@ -230,12 +230,23 @@ workstation.bioyond_dispensing_station:
           title: DispenStationSolnPrep
           type: object
         type: DispenStationSolnPrep
-    module: unilabos.devices.workstation.bioyond_studio.dispensing_station:BioyondDispendsingStation
+    module: unilabos.devices.workstation.bioyond_studio.dispensing_station:BioyondDispensingStation
     status_types: {}
     type: python
   config_info: []
   description: ''
   handles: []
   icon: ''
-  init_param_schema: {}
+  init_param_schema:
+    config:
+      properties:
+        config:
+          type: string
+      required:
+      - config
+      type: object
+    data:
+      properties: {}
+      required: []
+      type: object
   version: 1.0.0

unilabos/registry/devices/laiyu_liquid.yaml

@@ -1361,8 +1361,7 @@ laiyu_liquid:
           mix_liquid_height: 0.0
           mix_rate: 0
           mix_stage: ''
-          mix_times:
+          mix_times: 0
-          - 0
           mix_vol: 0
           none_keys:
           - ''
@@ -1492,11 +1491,9 @@ laiyu_liquid:
                 mix_stage:
                   type: string
                 mix_times:
-                  items:
+                  maximum: 2147483647
-                    maximum: 2147483647
+                  minimum: -2147483648
-                    minimum: -2147483648
+                  type: integer
-                    type: integer
-                  type: array
                 mix_vol:
                   maximum: 2147483647
                   minimum: -2147483648

unilabos/registry/devices/liquid_handler.yaml

@@ -3994,8 +3994,7 @@ liquid_handler:
           mix_liquid_height: 0.0
           mix_rate: 0
           mix_stage: ''
-          mix_times:
+          mix_times: 0
-          - 0
           mix_vol: 0
           none_keys:
           - ''
@@ -4151,11 +4150,9 @@ liquid_handler:
                 mix_stage:
                   type: string
                 mix_times:
-                  items:
+                  maximum: 2147483647
-                    maximum: 2147483647
+                  minimum: -2147483648
-                    minimum: -2147483648
+                  type: integer
-                    type: integer
-                  type: array
                 mix_vol:
                   maximum: 2147483647
                   minimum: -2147483648
@@ -5015,8 +5012,7 @@ liquid_handler.biomek:
           mix_liquid_height: 0.0
           mix_rate: 0
           mix_stage: ''
-          mix_times:
+          mix_times: 0
-          - 0
           mix_vol: 0
           none_keys:
           - ''
@@ -5159,11 +5155,9 @@ liquid_handler.biomek:
                 mix_stage:
                   type: string
                 mix_times:
-                  items:
+                  maximum: 2147483647
-                    maximum: 2147483647
+                  minimum: -2147483648
-                    minimum: -2147483648
+                  type: integer
-                    type: integer
-                  type: array
                 mix_vol:
                   maximum: 2147483647
                   minimum: -2147483648
@@ -7807,8 +7801,7 @@ liquid_handler.prcxi:
           mix_liquid_height: 0.0
           mix_rate: 0
           mix_stage: ''
-          mix_times:
+          mix_times: 0
-          - 0
           mix_vol: 0
           none_keys:
           - ''
@@ -7937,11 +7930,9 @@ liquid_handler.prcxi:
                 mix_stage:
                   type: string
                 mix_times:
-                  items:
+                  maximum: 2147483647
-                    maximum: 2147483647
+                  minimum: -2147483648
-                    minimum: -2147483648
+                  type: integer
-                    type: integer
-                  type: array
                 mix_vol:
                   maximum: 2147483647
                   minimum: -2147483648

unilabos/registry/devices/reaction_station_bioyond.yaml

@@ -4,11 +4,11 @@ reaction_station.bioyond:
   - reaction_station_bioyond
   class:
     action_value_mappings:
-      auto-add_material:
+      auto-append_to_workflow_sequence:
         feedback: {}
         goal: {}
         goal_default:
-          material_data: null
+          web_workflow_name: null
         handles: {}
         placeholder_keys: {}
         result: {}
@@ -18,22 +18,21 @@ reaction_station.bioyond:
             feedback: {}
             goal:
               properties:
-                material_data:
+                web_workflow_name:
-                  type: object
+                  type: string
               required:
-              - material_data
+              - web_workflow_name
               type: object
             result: {}
           required:
           - goal
-          title: add_material参数
+          title: append_to_workflow_sequence参数
           type: object
         type: UniLabJsonCommand
-      auto-create_90_10_vial_feeding_task:
+      auto-clear_workflows:
         feedback: {}
         goal: {}
-        goal_default:
+        goal_default: {}
-          task_data: null
         handles: {}
         placeholder_keys: {}
         result: {}
@@ -42,470 +41,13 @@ reaction_station.bioyond:
           properties:
             feedback: {}
             goal:
-              properties:
+              properties: {}
-                task_data:
-                  type: string
-              required:
-              - task_data
-              type: object
-            result: {}
-          required:
-          - goal
-          title: create_90_10_vial_feeding_task参数
-          type: object
-        type: UniLabJsonCommand
-      auto-create_batch_90_10_vial_feeding_task:
-        feedback: {}
-        goal: {}
-        goal_default:
-          batch_data: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                batch_data:
-                  type: string
-              required:
-              - batch_data
-              type: object
-            result: {}
-          required:
-          - goal
-          title: create_batch_90_10_vial_feeding_task参数
-          type: object
-        type: UniLabJsonCommand
-      auto-create_batch_diamine_solution_task:
-        feedback: {}
-        goal: {}
-        goal_default:
-          batch_data: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                batch_data:
-                  type: string
-              required:
-              - batch_data
-              type: object
-            result: {}
-          required:
-          - goal
-          title: create_batch_diamine_solution_task参数
-          type: object
-        type: UniLabJsonCommand
-      auto-create_diamine_solution_task:
-        feedback: {}
-        goal: {}
-        goal_default:
-          solution_data: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                solution_data:
-                  type: string
-              required:
-              - solution_data
-              type: object
-            result: {}
-          required:
-          - goal
-          title: create_diamine_solution_task参数
-          type: object
-        type: UniLabJsonCommand
-      auto-create_order:
-        feedback: {}
-        goal: {}
-        goal_default:
-          parameters: null
-          task_name: null
-          workflow_name: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                parameters:
-                  type: object
-                task_name:
-                  type: string
-                workflow_name:
-                  type: string
-              required:
-              - workflow_name
-              - task_name
-              type: object
-            result: {}
-          required:
-          - goal
-          title: create_order参数
-          type: object
-        type: UniLabJsonCommand
-      auto-create_resource:
-        feedback: {}
-        goal: {}
-        goal_default:
-          resource_data: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                resource_data:
-                  type: string
-              required:
-              - resource_data
-              type: object
-            result: {}
-          required:
-          - goal
-          title: create_resource参数
-          type: object
-        type: UniLabJsonCommand
-      auto-delete_material:
-        feedback: {}
-        goal: {}
-        goal_default:
-          material_data: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                material_data:
-                  type: string
-              required:
-              - material_data
-              type: object
-            result: {}
-          required:
-          - goal
-          title: delete_material参数
-          type: object
-        type: UniLabJsonCommand
-      auto-device_operation:
-        feedback: {}
-        goal: {}
-        goal_default:
-          device_id: null
-          operation: null
-          parameters: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                device_id:
-                  type: string
-                operation:
-                  type: string
-                parameters:
-                  type: object
-              required:
-              - device_id
-              - operation
-              type: object
-            result: {}
-          required:
-          - goal
-          title: device_operation参数
-          type: object
-        type: UniLabJsonCommand
-      auto-dispensing_material_inbound:
-        feedback: {}
-        goal: {}
-        goal_default:
-          material_data: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                material_data:
-                  type: string
-              required:
-              - material_data
-              type: object
-            result: {}
-          required:
-          - goal
-          title: dispensing_material_inbound参数
-          type: object
-        type: UniLabJsonCommand
-      auto-dispensing_material_outbound:
-        feedback: {}
-        goal: {}
-        goal_default:
-          material_data: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                material_data:
-                  type: string
-              required:
-              - material_data
-              type: object
-            result: {}
-          required:
-          - goal
-          title: dispensing_material_outbound参数
-          type: object
-        type: UniLabJsonCommand
-      auto-drip_back:
-        feedback: {}
-        goal: {}
-        goal_default:
-          assign_material_name: Reactor
-          temperature: 25.0
-          time: '0'
-          torque_variation: '1'
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                assign_material_name:
-                  default: Reactor
-                  type: string
-                temperature:
-                  default: 25.0
-                  type: number
-                time:
-                  default: '0'
-                  type: string
-                torque_variation:
-                  default: '1'
-                  type: string
               required: []
               type: object
             result: {}
           required:
           - goal
-          title: drip_back参数
+          title: clear_workflows参数
-          type: object
-        type: UniLabJsonCommand
-      auto-execute_bioyond_sync_workflow:
-        feedback: {}
-        goal: {}
-        goal_default:
-          parameters: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                parameters:
-                  type: object
-              required:
-              - parameters
-              type: object
-            result: {}
-          required:
-          - goal
-          title: execute_bioyond_sync_workflow参数
-          type: object
-        type: UniLabJsonCommandAsync
-      auto-execute_bioyond_update_workflow:
-        feedback: {}
-        goal: {}
-        goal_default:
-          parameters: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                parameters:
-                  type: object
-              required:
-              - parameters
-              type: object
-            result: {}
-          required:
-          - goal
-          title: execute_bioyond_update_workflow参数
-          type: object
-        type: UniLabJsonCommandAsync
-      auto-liquid_feeding_beaker:
-        feedback: {}
-        goal: {}
-        goal_default:
-          material_name: ''
-          volume: ''
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                material_name:
-                  default: ''
-                  type: string
-                volume:
-                  default: ''
-                  type: string
-              required: []
-              type: object
-            result: {}
-          required:
-          - goal
-          title: liquid_feeding_beaker参数
-          type: object
-        type: UniLabJsonCommand
-      auto-liquid_feeding_solvents:
-        feedback: {}
-        goal: {}
-        goal_default:
-          material_name: ''
-          volume: ''
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                material_name:
-                  default: ''
-                  type: string
-                volume:
-                  default: ''
-                  type: string
-              required: []
-              type: object
-            result: {}
-          required:
-          - goal
-          title: liquid_feeding_solvents参数
-          type: object
-        type: UniLabJsonCommand
-      auto-liquid_feeding_titration:
-        feedback: {}
-        goal: {}
-        goal_default:
-          material_name: ''
-          time: '120'
-          titration_type: '1'
-          torque_variation: '2'
-          volume: ''
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                material_name:
-                  default: ''
-                  type: string
-                time:
-                  default: '120'
-                  type: string
-                titration_type:
-                  default: '1'
-                  type: string
-                torque_variation:
-                  default: '2'
-                  type: string
-                volume:
-                  default: ''
-                  type: string
-              required: []
-              type: object
-            result: {}
-          required:
-          - goal
-          title: liquid_feeding_titration参数
-          type: object
-        type: UniLabJsonCommand
-      auto-liquid_feeding_vials_non_titration:
-        feedback: {}
-        goal: {}
-        goal_default:
-          material_name: ''
-          volume: ''
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                material_name:
-                  default: ''
-                  type: string
-                volume:
-                  default: ''
-                  type: string
-              required: []
-              type: object
-            result: {}
-          required:
-          - goal
-          title: liquid_feeding_vials_non_titration参数
           type: object
         type: UniLabJsonCommand
       auto-load_bioyond_data_from_file:
@@ -533,74 +75,11 @@ reaction_station.bioyond:
           title: load_bioyond_data_from_file参数
           type: object
         type: UniLabJsonCommand
-      auto-material_inbound:
-        feedback: {}
-        goal: {}
-        goal_default:
-          location_name: null
-          material_id: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                location_name:
-                  type: string
-                material_id:
-                  type: string
-              required:
-              - material_id
-              - location_name
-              type: object
-            result: {}
-          required:
-          - goal
-          title: material_inbound参数
-          type: object
-        type: UniLabJsonCommand
-      auto-material_outbound:
-        feedback: {}
-        goal: {}
-        goal_default:
-          location_name: null
-          material_id: null
-          quantity: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                location_name:
-                  type: string
-                material_id:
-                  type: string
-                quantity:
-                  type: integer
-              required:
-              - material_id
-              - location_name
-              - quantity
-              type: object
-            result: {}
-          required:
-          - goal
-          title: material_outbound参数
-          type: object
-        type: UniLabJsonCommand
       auto-merge_workflow_with_parameters:
         feedback: {}
         goal: {}
         goal_default:
-          name: null
+          json_str: null
-          workflows: null
         handles: {}
         placeholder_keys: {}
         result: {}
@@ -610,15 +89,10 @@ reaction_station.bioyond:
             feedback: {}
             goal:
               properties:
-                name:
+                json_str:
                   type: string
-                workflows:
-                  items:
-                    type: object
-                  type: array
               required:
-              - name
+              - json_str
-              - workflows
               type: object
             result: {}
           required:
@@ -626,31 +100,6 @@ reaction_station.bioyond:
           title: merge_workflow_with_parameters参数
           type: object
         type: UniLabJsonCommand
-      auto-order_query:
-        feedback: {}
-        goal: {}
-        goal_default:
-          query_data: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                query_data:
-                  type: string
-              required:
-              - query_data
-              type: object
-            result: {}
-          required:
-          - goal
-          title: order_query参数
-          type: object
-        type: UniLabJsonCommand
       auto-post_init:
         feedback: {}
         goal: {}
@@ -676,33 +125,11 @@ reaction_station.bioyond:
           title: post_init参数
           type: object
         type: UniLabJsonCommand
-      auto-reactor_taken_in:
+      auto-process_web_workflows:
-        feedback: {}
-        goal: {}
-        goal_default: {}
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties: {}
-              required: []
-              type: object
-            result: {}
-          required:
-          - goal
-          title: reactor_taken_in参数
-          type: object
-        type: UniLabJsonCommand
-      auto-reactor_taken_out:
         feedback: {}
         goal: {}
         goal_default:
-          order_id: ''
+          json_str: null
-          preintake_id: ''
         handles: {}
         placeholder_keys: {}
         result: {}
@@ -712,18 +139,15 @@ reaction_station.bioyond:
             feedback: {}
             goal:
               properties:
-                order_id:
+                json_str:
-                  default: ''
                   type: string
-                preintake_id:
+              required:
-                  default: ''
+              - json_str
-                  type: string
-              required: []
               type: object
             result: {}
           required:
           - goal
-          title: reactor_taken_out参数
+          title: process_web_workflows参数
           type: object
         type: UniLabJsonCommand
       auto-reset_workstation:
@@ -747,11 +171,11 @@ reaction_station.bioyond:
           title: reset_workstation参数
           type: object
         type: UniLabJsonCommand
-      auto-sample_waste_removal:
+      auto-resource_tree_add:
         feedback: {}
         goal: {}
         goal_default:
-          waste_data: null
+          resources: null
         handles: {}
         placeholder_keys: {}
         result: {}
@@ -761,119 +185,42 @@ reaction_station.bioyond:
             feedback: {}
             goal:
               properties:
-                waste_data:
+                resources:
+                  items:
+                    type: object
+                  type: array
+              required:
+              - resources
+              type: object
+            result: {}
+          required:
+          - goal
+          title: resource_tree_add参数
+          type: object
+        type: UniLabJsonCommand
+      auto-set_workflow_sequence:
+        feedback: {}
+        goal: {}
+        goal_default:
+          json_str: null
+        handles: {}
+        placeholder_keys: {}
+        result: {}
+        schema:
+          description: ''
+          properties:
+            feedback: {}
+            goal:
+              properties:
+                json_str:
                   type: string
               required:
-              - waste_data
+              - json_str
               type: object
             result: {}
           required:
           - goal
-          title: sample_waste_removal参数
+          title: set_workflow_sequence参数
-          type: object
-        type: UniLabJsonCommand
-      auto-solid_feeding_vials:
-        feedback: {}
-        goal: {}
-        goal_default:
-          material_name: ''
-          volume: ''
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                material_name:
-                  default: ''
-                  type: string
-                volume:
-                  default: ''
-                  type: string
-              required: []
-              type: object
-            result: {}
-          required:
-          - goal
-          title: solid_feeding_vials参数
-          type: object
-        type: UniLabJsonCommand
-      auto-start_scheduler:
-        feedback: {}
-        goal: {}
-        goal_default: {}
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties: {}
-              required: []
-              type: object
-            result: {}
-          required:
-          - goal
-          title: start_scheduler参数
-          type: object
-        type: UniLabJsonCommand
-      auto-stock_material:
-        feedback: {}
-        goal: {}
-        goal_default:
-          location: null
-          material_id: null
-          quantity: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                location:
-                  type: string
-                material_id:
-                  type: string
-                quantity:
-                  type: integer
-              required:
-              - material_id
-              - location
-              - quantity
-              type: object
-            result: {}
-          required:
-          - goal
-          title: stock_material参数
-          type: object
-        type: UniLabJsonCommand
-      auto-stop_scheduler:
-        feedback: {}
-        goal: {}
-        goal_default: {}
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties: {}
-              required: []
-              type: object
-            result: {}
-          required:
-          - goal
-          title: stop_scheduler参数
           type: object
         type: UniLabJsonCommand
       auto-transfer_resource_to_another:
@@ -1064,33 +411,6 @@ reaction_station.bioyond:
           title: transfer_resource_to_another参数
           type: object
         type: UniLabJsonCommand
-      auto-validate_workflow_parameters:
-        feedback: {}
-        goal: {}
-        goal_default:
-          workflows: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                workflows:
-                  items:
-                    type: object
-                  type: array
-              required:
-              - workflows
-              type: object
-            result: {}
-          required:
-          - goal
-          title: validate_workflow_parameters参数
-          type: object
-        type: UniLabJsonCommand
       bioyond_sync:
         feedback: {}
         goal:
@@ -1407,11 +727,8 @@ reaction_station.bioyond:
     module: unilabos.devices.workstation.bioyond_studio.station:BioyondWorkstation
     protocol_type: []
     status_types:
+      all_workflows: dict
       bioyond_status: dict
-      device_list: dict
-      scheduler_status: dict
-      station_info: dict
-      workflow_parameter_template: dict
       workstation_status: dict
     type: python
   config_info: []
@@ -1431,24 +748,15 @@ reaction_station.bioyond:
       type: object
     data:
       properties:
+        all_workflows:
+          type: object
         bioyond_status:
           type: object
-        device_list:
-          type: object
-        scheduler_status:
-          type: object
-        station_info:
-          type: object
-        workflow_parameter_template:
-          type: object
         workstation_status:
           type: object
       required:
-      - station_info
       - bioyond_status
-      - workflow_parameter_template
+      - all_workflows
-      - scheduler_status
-      - device_list
       - workstation_status
       type: object
   version: 1.0.0

unilabos/resources/graphio.py

@@ -1,12 +1,14 @@
 import importlib
 import inspect
 import json
+import os.path
 import traceback
 from typing import Union, Any, Dict, List, Tuple
 import networkx as nx
 from pylabrobot.resources import ResourceHolder
 from unilabos_msgs.msg import Resource
 
+from unilabos.config.config import BasicConfig
 from unilabos.resources.container import RegularContainer
 from unilabos.resources.itemized_carrier import ItemizedCarrier
 from unilabos.ros.msgs.message_converter import convert_to_ros_msg
@@ -45,6 +47,29 @@ def canonicalize_nodes_data(
         if node.get("label") is not None:
             node_id = node.pop("label")
             node["id"] = node["name"] = node_id
+        if not isinstance(node.get("config"), dict):
+            node["config"] = {}
+        if not node.get("type"):
+            node["type"] = "device"
+            print_status(f"Warning: Node {node.get('id', 'unknown')} missing 'type', defaulting to 'device'", "warning")
+        if not node.get("name"):
+            node["name"] = node.get("id")
+            print_status(f"Warning: Node {node.get('id', 'unknown')} missing 'name', defaulting to {node['name']}", "warning")
+        if not isinstance(node.get("position"), dict):
+            node["position"] = {"position": {}}
+            x = node.pop("x", None)
+            if x is not None:
+                node["position"]["position"]["x"] = x
+            y = node.pop("y", None)
+            if y is not None:
+                node["position"]["position"]["y"] = y
+            z = node.pop("z", None)
+            if z is not None:
+                node["position"]["position"]["z"] = z
+        for k in list(node.keys()):
+            if k not in ["id", "uuid", "name", "description", "schema", "model", "icon", "parent_uuid", "parent", "type", "class", "position", "config", "data"]:
+                v = node.pop(k)
+                node["config"][k] = v
 
     # 第二步：处理parent_relation
     id2idx = {node["id"]: idx for idx, node in enumerate(nodes)}
@@ -302,6 +327,10 @@ def read_graphml(graphml_file: str) -> tuple[nx.Graph, ResourceTreeSet, List[Dic
         "nodes": [node.res_content.model_dump(by_alias=True) for node in resource_tree_set.all_nodes],
         "links": standardized_links,
     }
+    dump_json_path = os.path.join(BasicConfig.working_dir, os.path.basename(graphml_file).rsplit(".")[0] + ".json")
+    with open(dump_json_path, "w", encoding="utf-8") as f:
+        f.write(json.dumps(graph_data, indent=4, ensure_ascii=False))
+        print_status(f"GraphML converted to JSON and saved to {dump_json_path}", "info")
     physical_setup_graph = nx.node_link_graph(graph_data, link="links", multigraph=False)
     handle_communications(physical_setup_graph)