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fix: Protocol node resource run (#65)

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* stir和adjustph的中的bug修不好

* fix sub-resource query in protocol node compiling

* add resource placeholder to vessels

* add the rest yaml

* Update work_station.yaml

---------

Co-authored-by: KCFeng425 <2100011801@stu.pku.edu.cn>
This commit is contained in:
Junhan Chang
2025-07-19 04:19:57 +08:00
committed by GitHub
parent 4cd40865b4
commit c2dfe689aa
11 changed files with 252 additions and 148 deletions
Download Patch File Download Diff File Expand all files Collapse all files

84
unilabos/registry/devices/virtual_device.yaml
View File

@@ -4580,7 +4580,6 @@ virtual_solid_dispenser:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
@@ -4588,30 +4587,6 @@ virtual_solid_dispenser:
title: cleanup参数
type: object
type: UniLabJsonCommandAsync
auto-find_solid_reagent_bottle:
feedback: {}
goal: {}
goal_default:
reagent_name: null
handles: []
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
reagent_name:
type: string
required:
- reagent_name
type: object
result: {}
required:
- goal
title: find_solid_reagent_bottle参数
type: object
type: UniLabJsonCommand
auto-initialize:
feedback: {}
goal: {}
@@ -4624,7 +4599,6 @@ virtual_solid_dispenser:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
@@ -4632,58 +4606,9 @@ virtual_solid_dispenser:
title: initialize参数
type: object
type: UniLabJsonCommandAsync
auto-parse_mass_string:
feedback: {}
goal: {}
goal_default:
mass_str: null
handles: []
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
mass_str:
type: string
required:
- mass_str
type: object
result: {}
required:
- goal
title: parse_mass_string参数
type: object
type: UniLabJsonCommand
auto-parse_mol_string:
feedback: {}
goal: {}
goal_default:
mol_str: null
handles: []
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
mol_str:
type: string
required:
- mol_str
type: object
result: {}
required:
- goal
title: parse_mol_string参数
type: object
type: UniLabJsonCommand
module: unilabos.devices.virtual.virtual_solid_dispenser:VirtualSolidDispenser
status_types:
current_reagent: str
device_info: dict
dispensed_amount: float
status: str
total_operations: int
@@ -4716,14 +4641,18 @@ virtual_solid_dispenser:
type: object
device_id:
type: string
max_capacity:
default: 100.0
type: number
precision:
default: 0.001
type: number
required: []
type: object
data:
properties:
current_reagent:
type: string
device_info:
type: object
dispensed_amount:
type: number
status:
@@ -4735,7 +4664,6 @@ virtual_solid_dispenser:
- current_reagent
- dispensed_amount
- total_operations
- device_info
type: object
version: 1.0.0
virtual_stirrer:

92
unilabos/registry/devices/work_station.yaml
View File

@@ -245,8 +245,13 @@ workstation:
feedback: {}
goal:
amount: amount
equiv: equiv
event: event
mass: mass
mol: mol
purpose: purpose
rate_spec: rate_spec
ratio: ratio
reagent: reagent
stir: stir
stir_speed: stir_speed
@@ -470,6 +475,11 @@ workstation:
ph_value: ph_value
reagent: reagent
vessel: vessel
volume: volume
stir: stir
stir_speed: stir_speed
stir_time: stir_time
settling_time: settling_time
goal_default:
ph_value: 0.0
reagent: ''
@@ -493,6 +503,11 @@ workstation:
z: 0.0
sample_id: ''
type: ''
volume: 0.0
stir: false
stir_speed: 300.0
stir_time: 60.0
settling_time: 30.0
handles:
input:
- data_key: vessel
@@ -511,6 +526,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -605,6 +622,21 @@ workstation:
- data
title: Resource
type: object
volume:
type: number
description: 'Volume of the solution to adjust pH'
stir:
type: boolean
description: "是否启用搅拌"
stir_speed:
type: number
description: "搅拌速度(RPM)"
stir_time:
type: number
description: "搅拌时间(秒)"
settling_time:
type: number
description: "pH平衡时间(秒)"
required:
- vessel
- ph_value
@@ -674,6 +706,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -853,6 +887,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -1060,6 +1096,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -1191,6 +1229,10 @@ workstation:
feedback: {}
goal:
amount: amount
event: event
mass: mass
mol: mol
reagent: reagent
solvent: solvent
stir_speed: stir_speed
temp: temp
@@ -1246,6 +1288,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -1429,6 +1473,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -1585,6 +1631,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -1778,6 +1826,8 @@ workstation:
data_type: resource
handler_key: vessel_out
label: Evaporation Vessel
placeholder_keys:
vessel: unilabos_nodes
result: {}
schema:
description: ''
@@ -2014,6 +2064,9 @@ workstation:
data_type: resource
handler_key: filtrate_out
label: Filtrate Vessel
placeholder_keys:
filtrate_vessel: unilabos_resources
vessel: unilabos_nodes
result: {}
schema:
description: ''
@@ -2195,7 +2248,7 @@ workstation:
type: number
required:
- vessel
- filtrate_vessel
- #filtrate_vessel
- stir
- stir_speed
- temp
@@ -2325,6 +2378,9 @@ workstation:
data_type: resource
handler_key: ToVesselOut
label: To Vessel
placeholder_keys:
from_vessel: unilabos_resources
to_vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -2656,6 +2712,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -2835,6 +2893,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -2986,6 +3046,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -3135,6 +3197,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -3354,6 +3418,9 @@ workstation:
data_type: resource
handler_key: ToVesselOut
label: To Vessel
placeholder_keys:
from_vessel: unilabos_nodes
to_vessel: unilabos_nodes
result: {}
schema:
description: ''
@@ -3667,6 +3734,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -4019,6 +4088,10 @@ workstation:
data_type: resource
handler_key: ToVesselOut
label: To Vessel
placeholder_keys:
column: unilabos_devices
from_vessel: unilabos_resources
to_vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -4422,6 +4495,11 @@ workstation:
data_type: resource
handler_key: ToVesselOut
label: To Vessel
placeholder_keys:
from_vessel: unilabos_resources
to_vessel: unilabos_resources
waste_phase_to_vessel: unilabos_resources
waste_vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -5053,6 +5131,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -5225,6 +5305,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -5391,6 +5473,8 @@ workstation:
data_type: resource
handler_key: VesselOut
label: Vessel
placeholder_keys:
vessel: unilabos_resources
result: {}
schema:
description: ''
@@ -5556,6 +5640,9 @@ workstation:
data_type: resource
handler_key: ToVesselOut
label: To Vessel
placeholder_keys:
from_vessel: unilabos_nodes
to_vessel: unilabos_nodes
result: {}
schema:
description: ''
@@ -5722,6 +5809,9 @@ workstation:
data_type: resource
handler_key: filtrate_vessel_out
label: Filtrate Vessel
placeholder_keys:
filtrate_vessel: unilabos_resources
vessel: unilabos_resources
result: {}
schema:
description: ''