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Workstation templates: Resources and its CRUD, and workstation tasks (#95)
* coin_cell_station draft * refactor: rename "station_resource" to "deck" * add standardized BIOYOND resources: bottle_carrier, bottle * refactor and add BIOYOND resources tests * add BIOYOND deck assignment and pass all tests * fix: update resource with correct structure; remove deprecated liquid_handler set_group action * feat: 将新威电池测试系统驱动与配置文件并入 workstation_dev_YB2 (#92) * feat: 新威电池测试系统驱动与注册文件 * feat: bring neware driver & battery.json into workstation_dev_YB2 * add bioyond studio draft * bioyond station with communication init and resource sync * fix bioyond station and registry * create/update resources with POST/PUT for big amount/ small amount data * refactor: add itemized_carrier instead of carrier consists of ResourceHolder * create warehouse by factory func * update bioyond launch json * add child_size for itemized_carrier * fix bioyond resource io --------- Co-authored-by: h840473807 <47357934+h840473807@users.noreply.github.com> Co-authored-by: Xie Qiming <97236197+Andy6M@users.noreply.github.com>
This commit is contained in:
Junhan Chang
GitHub
198
test/resources/bioyond_materials.json
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198
test/resources/bioyond_materials.json
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{
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"data": [
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{
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"id": "3a1c67a9-aed7-b94d-9e24-bfdf10c8baa9",
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"typeName": "烧杯",
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"code": "0006-00160",
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"barCode": "",
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"name": "ODA",
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"quantity": 120000.00000000000000000000000,
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"lockQuantity": 695374.00000000000000000000000,
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"unit": "微升",
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"status": 1,
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"isUse": false,
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"locations": [
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{
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"id": "3a14aa17-0d49-11d7-a6e1-f236b3e5e5a3",
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"whid": "3a14aa17-0d49-dce4-486e-4b5c85c8b366",
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"whName": "堆栈1",
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"code": "0001-0001",
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"x": 1,
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"y": 1,
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"z": 1,
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"quantity": 0
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}
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],
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"detail": []
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},
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{
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"id": "3a1c67a9-aed9-1ade-5fe1-cc04b24b171c",
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"typeName": "烧杯",
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"code": "0006-00161",
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"barCode": "",
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"name": "MPDA",
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"quantity": 120000.00000000000000000000000,
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"lockQuantity": 681618.00000000000000000000000,
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"unit": "",
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"status": 1,
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"isUse": false,
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"locations": [
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{
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"id": "3a14aa17-0d49-4bc5-8836-517b75473f5f",
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"whid": "3a14aa17-0d49-dce4-486e-4b5c85c8b366",
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"whName": "堆栈1",
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"code": "0001-0002",
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"x": 1,
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"y": 2,
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"z": 1,
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"quantity": 0
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}
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],
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"detail": []
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},
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{
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"id": "3a1c67a9-aed9-2864-6783-2cee4e701ba6",
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"typeName": "试剂瓶",
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"code": "0004-00041",
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"barCode": "",
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"name": "NMP",
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"quantity": 300000.00000000000000000000000,
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"lockQuantity": 380000.00000000000000000000000,
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"unit": "微升",
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"status": 1,
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"isUse": false,
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"locations": [
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{
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"id": "3a14aa3b-9fab-adac-7b9c-e1ee446b51d5",
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"whid": "3a14aa3b-9fab-9d8e-d1a7-828f01f51f0c",
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"whName": "站内试剂存放堆栈",
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"code": "0003-0001",
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"x": 1,
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"y": 1,
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"z": 1,
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"quantity": 0
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}
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],
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"detail": []
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},
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{
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"id": "3a1c67a9-aed9-32c7-5809-3ba1b8db1aa1",
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"typeName": "试剂瓶",
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"code": "0004-00042",
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"barCode": "",
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"name": "PGME",
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"quantity": 300000.00000000000000000000000,
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"lockQuantity": 337892.00000000000000000000000,
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"unit": "",
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"status": 1,
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"isUse": false,
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"locations": [
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{
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"id": "3a14aa3b-9fab-ca72-febc-b7c304476c78",
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"whid": "3a14aa3b-9fab-9d8e-d1a7-828f01f51f0c",
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"whName": "站内试剂存放堆栈",
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"code": "0003-0002",
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"x": 1,
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"y": 2,
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"z": 1,
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"quantity": 0
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}
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],
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"detail": []
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},
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{
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"id": "3a1c68c8-0574-d748-725e-97a2e549f085",
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"typeName": "样品板",
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"code": "0001-00004",
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"barCode": "",
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"name": "0917",
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"quantity": 1.0000000000000000000000000000,
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"lockQuantity": 4.0000000000000000000000000000,
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"unit": "块",
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"status": 1,
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"isUse": false,
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"locations": [
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{
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"id": "3a14aa17-0d49-f49c-6b66-b27f185a3b32",
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"whid": "3a14aa17-0d49-dce4-486e-4b5c85c8b366",
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"whName": "堆栈1",
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"code": "0001-0009",
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"x": 2,
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"y": 1,
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"z": 1,
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"quantity": 0
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}
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],
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"detail": [
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{
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"id": "3a1c68c8-0574-69a1-9858-4637e0193451",
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"detailMaterialId": "3a1c68c8-0574-3630-bd42-bbf3623c5208",
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"code": null,
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"name": "SIDA",
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"quantity": "300000",
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"lockQuantity": "4",
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"unit": "微升",
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"x": 1,
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"y": 2,
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"z": 1,
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"associateId": null
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},
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{
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"id": "3a1c68c8-0574-8d51-3191-a31f5be421e5",
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"detailMaterialId": "3a1c68c8-0574-3b20-9ad7-90755f123d53",
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"code": null,
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"name": "BTDA-2",
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"quantity": "300000",
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"lockQuantity": "4",
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"unit": "微升",
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"x": 2,
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"y": 2,
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"z": 1,
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"associateId": null
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},
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{
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"id": "3a1c68c8-0574-da80-735b-53ae2197a360",
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"detailMaterialId": "3a1c68c8-0574-f2e4-33b3-90d813567939",
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"code": null,
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"name": "BTDA-DD",
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"quantity": "300000",
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"lockQuantity": "28",
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"unit": "微升",
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"x": 1,
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"y": 1,
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"z": 1,
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"associateId": null
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},
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{
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"id": "3a1c68c8-0574-e717-1b1b-99891f875455",
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"detailMaterialId": "3a1c68c8-0574-a0ef-e636-68cdc98960e2",
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"code": null,
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"name": "BTDA-3",
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"quantity": "300000",
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"lockQuantity": "4",
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"unit": "微升",
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"x": 2,
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"y": 3,
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"z": 1,
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"associateId": null
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},
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{
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"id": "3a1c68c8-0574-e9bd-6cca-5e261b4f89cb",
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"detailMaterialId": "3a1c68c8-0574-9d11-5115-283e8e5510b1",
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"code": null,
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"name": "BTDA-1",
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"quantity": "300000",
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"lockQuantity": "4",
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"unit": "微升",
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"x": 2,
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"y": 1,
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"z": 1,
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"associateId": null
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}
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]
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}
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],
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"code": 1,
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"message": "",
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"timestamp": 1758560573511
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}
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48
test/resources/test_bottle_carrier.py
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48
test/resources/test_bottle_carrier.py
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import pytest
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from unilabos.resources.bioyond.bottle_carriers import BIOYOND_Electrolyte_6VialCarrier, BIOYOND_Electrolyte_1BottleCarrier
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from unilabos.resources.bioyond.bottles import BIOYOND_PolymerStation_Solid_Vial, BIOYOND_PolymerStation_Solution_Beaker, BIOYOND_PolymerStation_Reagent_Bottle
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def test_bottle_carrier() -> "BottleCarrier":
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print("创建载架...")
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# 创建6瓶载架
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bottle_carrier = BIOYOND_Electrolyte_6VialCarrier("powder_carrier_01")
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print(f"6瓶载架: {bottle_carrier.name}, 位置数: {len(bottle_carrier.sites)}")
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# 创建1烧杯载架
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beaker_carrier = BIOYOND_Electrolyte_1BottleCarrier("solution_carrier_01")
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print(f"1烧杯载架: {beaker_carrier.name}, 位置数: {len(beaker_carrier.sites)}")
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# 创建瓶子和烧杯
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powder_bottle = BIOYOND_PolymerStation_Solid_Vial("powder_bottle_01")
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solution_beaker = BIOYOND_PolymerStation_Solution_Beaker("solution_beaker_01")
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reagent_bottle = BIOYOND_PolymerStation_Reagent_Bottle("reagent_bottle_01")
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print(f"\n创建的物料:")
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print(f"粉末瓶: {powder_bottle.name} - {powder_bottle.diameter}mm x {powder_bottle.height}mm, {powder_bottle.max_volume}μL")
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print(f"溶液烧杯: {solution_beaker.name} - {solution_beaker.diameter}mm x {solution_beaker.height}mm, {solution_beaker.max_volume}μL")
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print(f"试剂瓶: {reagent_bottle.name} - {reagent_bottle.diameter}mm x {reagent_bottle.height}mm, {reagent_bottle.max_volume}μL")
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# 测试放置容器
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print(f"\n测试放置容器...")
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# 通过载架的索引操作来放置容器
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# bottle_carrier[0] = powder_bottle # 放置粉末瓶到第一个位置
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print(f"粉末瓶已放置到6瓶载架的位置 0")
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# beaker_carrier[0] = solution_beaker # 放置烧杯到第一个位置
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print(f"溶液烧杯已放置到1烧杯载架的位置 0")
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# 验证放置结果
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print(f"\n验证放置结果:")
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bottle_at_0 = bottle_carrier[0].resource
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beaker_at_0 = beaker_carrier[0].resource
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if bottle_at_0:
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print(f"位置 0 的瓶子: {bottle_at_0.name}")
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if beaker_at_0:
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print(f"位置 0 的烧杯: {beaker_at_0.name}")
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print("\n载架设置完成！")
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35
test/resources/test_converter_bioyond.py
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35
test/resources/test_converter_bioyond.py
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import pytest
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import json
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import os
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from unilabos.resources.graphio import resource_bioyond_to_plr
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from unilabos.registry.registry import lab_registry
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from unilabos.resources.bioyond.decks import BIOYOND_PolymerReactionStation_Deck
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lab_registry.setup()
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type_mapping = {
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"烧杯": "BIOYOND_PolymerStation_1FlaskCarrier",
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"试剂瓶": "BIOYOND_PolymerStation_1BottleCarrier",
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"样品板": "BIOYOND_PolymerStation_6VialCarrier",
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}
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@pytest.fixture
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def bioyond_materials() -> list[dict]:
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print("加载 BioYond 物料数据...")
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print(os.getcwd())
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with open("bioyond_materials.json", "r", encoding="utf-8") as f:
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data = json.load(f)["data"]
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print(f"加载了 {len(data)} 条物料数据")
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return data
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def test_bioyond_to_plr(bioyond_materials) -> list[dict]:
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deck = BIOYOND_PolymerReactionStation_Deck("test_deck")
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print("将 BioYond 物料数据转换为 PLR 格式...")
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output = resource_bioyond_to_plr(bioyond_materials, type_mapping=type_mapping, deck=deck)
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print(deck.summary())
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print([resource.serialize() for resource in output])
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print([resource.serialize_all_state() for resource in output])
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