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feat/lab_r
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380b39100d |
@@ -46,7 +46,7 @@ requirements:
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- jinja2
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- jinja2
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- requests
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- requests
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- uvicorn
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- uvicorn
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- opcua
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- opcua # [not osx]
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- pyserial
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- pyserial
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- pandas
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- pandas
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- pymodbus
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- pymodbus
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@@ -452,8 +452,9 @@ unilab --ak your_ak --sk your_sk -g test/experiments/mock_devices/mock_all.json
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**操作步骤:**
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**操作步骤:**
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1. 将两个 `container` 拖拽到 `workstation` 中
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1. 将两个 `container` 拖拽到 `workstation` 中
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2. 将 `virtual_transfer_pump` 拖拽到 `workstation` 中
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2. 将 `virtual_multiway_valve` 拖拽到 `workstation` 中
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3. 在画布上连接它们(建立父子关系)
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3. 将 `virtual_transfer_pump` 拖拽到 `workstation` 中
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4. 在画布上连接它们(建立父子关系)
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Binary file not shown.
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Before Width: | Height: | Size: 275 KiB After Width: | Height: | Size: 415 KiB |
@@ -171,6 +171,12 @@ def parse_args():
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action="store_true",
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action="store_true",
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help="Disable sending update feedback to server",
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help="Disable sending update feedback to server",
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)
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)
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parser.add_argument(
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"--test_mode",
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action="store_true",
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default=False,
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help="Test mode: all actions simulate execution and return mock results without running real hardware",
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)
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# workflow upload subcommand
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# workflow upload subcommand
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workflow_parser = subparsers.add_parser(
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workflow_parser = subparsers.add_parser(
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"workflow_upload",
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"workflow_upload",
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@@ -204,6 +210,12 @@ def parse_args():
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default=False,
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default=False,
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help="Whether to publish the workflow (default: False)",
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help="Whether to publish the workflow (default: False)",
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)
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)
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workflow_parser.add_argument(
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"--description",
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type=str,
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default="",
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help="Workflow description, used when publishing the workflow",
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)
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return parser
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return parser
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@@ -231,52 +243,60 @@ def main():
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# 加载配置文件,优先加载config,然后从env读取
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# 加载配置文件,优先加载config,然后从env读取
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config_path = args_dict.get("config")
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config_path = args_dict.get("config")
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if check_mode:
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# === 解析 working_dir ===
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args_dict["working_dir"] = os.path.abspath(os.getcwd())
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# 规则1: working_dir 传入 → 检测 unilabos_data 子目录,已是则不修改
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# 当 skip_env_check 时,默认使用当前目录作为 working_dir
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# 规则2: 仅 config_path 传入 → 用其父目录作为 working_dir
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if skip_env_check and not args_dict.get("working_dir") and not config_path:
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# 规则4: 两者都传入 → 各用各的,但 working_dir 仍做 unilabos_data 子目录检测
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raw_working_dir = args_dict.get("working_dir")
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if raw_working_dir:
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working_dir = os.path.abspath(raw_working_dir)
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elif config_path and os.path.exists(config_path):
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working_dir = os.path.dirname(os.path.abspath(config_path))
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else:
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working_dir = os.path.abspath(os.getcwd())
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working_dir = os.path.abspath(os.getcwd())
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print_status(f"跳过环境检查模式:使用当前目录作为工作目录 {working_dir}", "info")
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# 检查当前目录是否有 local_config.py
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# unilabos_data 子目录自动检测
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local_config_in_cwd = os.path.join(working_dir, "local_config.py")
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if os.path.basename(working_dir) != "unilabos_data":
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if os.path.exists(local_config_in_cwd):
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unilabos_data_sub = os.path.join(working_dir, "unilabos_data")
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config_path = local_config_in_cwd
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if os.path.isdir(unilabos_data_sub):
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working_dir = unilabos_data_sub
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elif not raw_working_dir and not (config_path and os.path.exists(config_path)):
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# 未显式指定路径,默认使用 cwd/unilabos_data
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working_dir = os.path.abspath(os.path.join(os.getcwd(), "unilabos_data"))
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# === 解析 config_path ===
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if config_path and not os.path.exists(config_path):
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# config_path 传入但不存在,尝试在 working_dir 中查找
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candidate = os.path.join(working_dir, "local_config.py")
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if os.path.exists(candidate):
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config_path = candidate
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print_status(f"在工作目录中发现配置文件: {config_path}", "info")
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else:
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print_status(
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f"配置文件 {config_path} 不存在,工作目录 {working_dir} 中也未找到 local_config.py,"
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f"请通过 --config 传入 local_config.py 文件路径",
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"error",
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)
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os._exit(1)
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elif not config_path:
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# 规则3: 未传入 config_path,尝试 working_dir/local_config.py
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candidate = os.path.join(working_dir, "local_config.py")
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if os.path.exists(candidate):
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config_path = candidate
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print_status(f"发现本地配置文件: {config_path}", "info")
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print_status(f"发现本地配置文件: {config_path}", "info")
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else:
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else:
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print_status(f"未指定config路径,可通过 --config 传入 local_config.py 文件路径", "info")
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print_status(f"未指定config路径,可通过 --config 传入 local_config.py 文件路径", "info")
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elif os.getcwd().endswith("unilabos_data"):
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print_status(f"您是否为第一次使用?并将当前路径 {working_dir} 作为工作目录? (Y/n)", "info")
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working_dir = os.path.abspath(os.getcwd())
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if check_mode or input() != "n":
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else:
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os.makedirs(working_dir, exist_ok=True)
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working_dir = os.path.abspath(os.path.join(os.getcwd(), "unilabos_data"))
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config_path = os.path.join(working_dir, "local_config.py")
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shutil.copy(
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if args_dict.get("working_dir"):
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os.path.join(os.path.dirname(os.path.dirname(__file__)), "config", "example_config.py"),
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working_dir = args_dict.get("working_dir", "")
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config_path,
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if config_path and not os.path.exists(config_path):
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config_path = os.path.join(working_dir, "local_config.py")
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if not os.path.exists(config_path):
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print_status(
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f"当前工作目录 {working_dir} 未找到local_config.py,请通过 --config 传入 local_config.py 文件路径",
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"error",
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)
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)
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print_status(f"已创建 local_config.py 路径: {config_path}", "info")
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else:
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os._exit(1)
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os._exit(1)
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elif config_path and os.path.exists(config_path):
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working_dir = os.path.dirname(config_path)
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elif os.path.exists(working_dir) and os.path.exists(os.path.join(working_dir, "local_config.py")):
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config_path = os.path.join(working_dir, "local_config.py")
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elif not skip_env_check and not config_path and (
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not os.path.exists(working_dir) or not os.path.exists(os.path.join(working_dir, "local_config.py"))
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):
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print_status(f"未指定config路径,可通过 --config 传入 local_config.py 文件路径", "info")
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print_status(f"您是否为第一次使用?并将当前路径 {working_dir} 作为工作目录? (Y/n)", "info")
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||||||
if input() != "n":
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os.makedirs(working_dir, exist_ok=True)
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config_path = os.path.join(working_dir, "local_config.py")
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shutil.copy(
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os.path.join(os.path.dirname(os.path.dirname(__file__)), "config", "example_config.py"), config_path
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)
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print_status(f"已创建 local_config.py 路径: {config_path}", "info")
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else:
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os._exit(1)
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||||||
# 加载配置文件 (check_mode 跳过)
|
# 加载配置文件 (check_mode 跳过)
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print_status(f"当前工作目录为 {working_dir}", "info")
|
print_status(f"当前工作目录为 {working_dir}", "info")
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@@ -288,7 +308,9 @@ def main():
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if hasattr(BasicConfig, "log_level"):
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if hasattr(BasicConfig, "log_level"):
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logger.info(f"Log level set to '{BasicConfig.log_level}' from config file.")
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logger.info(f"Log level set to '{BasicConfig.log_level}' from config file.")
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configure_logger(loglevel=BasicConfig.log_level, working_dir=working_dir)
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file_path = configure_logger(loglevel=BasicConfig.log_level, working_dir=working_dir)
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if file_path is not None:
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logger.info(f"[LOG_FILE] {file_path}")
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if args.addr != parser.get_default("addr"):
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if args.addr != parser.get_default("addr"):
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if args.addr == "test":
|
if args.addr == "test":
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@@ -332,6 +354,9 @@ def main():
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BasicConfig.slave_no_host = args_dict.get("slave_no_host", False)
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BasicConfig.slave_no_host = args_dict.get("slave_no_host", False)
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BasicConfig.upload_registry = args_dict.get("upload_registry", False)
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BasicConfig.upload_registry = args_dict.get("upload_registry", False)
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BasicConfig.no_update_feedback = args_dict.get("no_update_feedback", False)
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BasicConfig.no_update_feedback = args_dict.get("no_update_feedback", False)
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BasicConfig.test_mode = args_dict.get("test_mode", False)
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if BasicConfig.test_mode:
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print_status("启用测试模式:所有动作将模拟执行,不调用真实硬件", "warning")
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BasicConfig.communication_protocol = "websocket"
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BasicConfig.communication_protocol = "websocket"
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machine_name = os.popen("hostname").read().strip()
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machine_name = os.popen("hostname").read().strip()
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machine_name = "".join([c if c.isalnum() or c == "_" else "_" for c in machine_name])
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machine_name = "".join([c if c.isalnum() or c == "_" else "_" for c in machine_name])
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@@ -54,6 +54,7 @@ class JobAddReq(BaseModel):
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action_type: str = Field(
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action_type: str = Field(
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examples=["unilabos_msgs.action._str_single_input.StrSingleInput"], description="action type", default=""
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examples=["unilabos_msgs.action._str_single_input.StrSingleInput"], description="action type", default=""
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)
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)
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sample_material: dict = Field(examples=[{"string": "string"}], description="sample uuid to material uuid")
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action_args: dict = Field(examples=[{"string": "string"}], description="action arguments", default_factory=dict)
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action_args: dict = Field(examples=[{"string": "string"}], description="action arguments", default_factory=dict)
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task_id: str = Field(examples=["task_id"], description="task uuid (auto-generated if empty)", default="")
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task_id: str = Field(examples=["task_id"], description="task uuid (auto-generated if empty)", default="")
|
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job_id: str = Field(examples=["job_id"], description="goal uuid (auto-generated if empty)", default="")
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job_id: str = Field(examples=["job_id"], description="goal uuid (auto-generated if empty)", default="")
|
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|
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@@ -38,9 +38,9 @@ def register_devices_and_resources(lab_registry, gather_only=False) -> Optional[
|
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response = http_client.resource_registry({"resources": list(devices_to_register.values())})
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response = http_client.resource_registry({"resources": list(devices_to_register.values())})
|
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cost_time = time.time() - start_time
|
cost_time = time.time() - start_time
|
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if response.status_code in [200, 201]:
|
if response.status_code in [200, 201]:
|
||||||
logger.info(f"[UniLab Register] 成功注册 {len(devices_to_register)} 个设备 {cost_time}ms")
|
logger.info(f"[UniLab Register] 成功注册 {len(devices_to_register)} 个设备 {cost_time}s")
|
||||||
else:
|
else:
|
||||||
logger.error(f"[UniLab Register] 设备注册失败: {response.status_code}, {response.text} {cost_time}ms")
|
logger.error(f"[UniLab Register] 设备注册失败: {response.status_code}, {response.text} {cost_time}s")
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
logger.error(f"[UniLab Register] 设备注册异常: {e}")
|
logger.error(f"[UniLab Register] 设备注册异常: {e}")
|
||||||
|
|
||||||
@@ -51,9 +51,9 @@ def register_devices_and_resources(lab_registry, gather_only=False) -> Optional[
|
|||||||
response = http_client.resource_registry({"resources": list(resources_to_register.values())})
|
response = http_client.resource_registry({"resources": list(resources_to_register.values())})
|
||||||
cost_time = time.time() - start_time
|
cost_time = time.time() - start_time
|
||||||
if response.status_code in [200, 201]:
|
if response.status_code in [200, 201]:
|
||||||
logger.info(f"[UniLab Register] 成功注册 {len(resources_to_register)} 个资源 {cost_time}ms")
|
logger.info(f"[UniLab Register] 成功注册 {len(resources_to_register)} 个资源 {cost_time}s")
|
||||||
else:
|
else:
|
||||||
logger.error(f"[UniLab Register] 资源注册失败: {response.status_code}, {response.text} {cost_time}ms")
|
logger.error(f"[UniLab Register] 资源注册失败: {response.status_code}, {response.text} {cost_time}s")
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
logger.error(f"[UniLab Register] 资源注册异常: {e}")
|
logger.error(f"[UniLab Register] 资源注册异常: {e}")
|
||||||
|
|
||||||
|
|||||||
@@ -343,9 +343,10 @@ class HTTPClient:
|
|||||||
edges: List[Dict[str, Any]],
|
edges: List[Dict[str, Any]],
|
||||||
tags: Optional[List[str]] = None,
|
tags: Optional[List[str]] = None,
|
||||||
published: bool = False,
|
published: bool = False,
|
||||||
|
description: str = "",
|
||||||
) -> Dict[str, Any]:
|
) -> Dict[str, Any]:
|
||||||
"""
|
"""
|
||||||
导入工作流到服务器
|
导入工作流到服务器,如果 published 为 True,则额外发起发布请求
|
||||||
|
|
||||||
Args:
|
Args:
|
||||||
name: 工作流名称(顶层)
|
name: 工作流名称(顶层)
|
||||||
@@ -355,6 +356,7 @@ class HTTPClient:
|
|||||||
edges: 工作流边列表
|
edges: 工作流边列表
|
||||||
tags: 工作流标签列表,默认为空列表
|
tags: 工作流标签列表,默认为空列表
|
||||||
published: 是否发布工作流,默认为False
|
published: 是否发布工作流,默认为False
|
||||||
|
description: 工作流描述,发布时使用
|
||||||
|
|
||||||
Returns:
|
Returns:
|
||||||
Dict: API响应数据,包含 code 和 data (uuid, name)
|
Dict: API响应数据,包含 code 和 data (uuid, name)
|
||||||
@@ -367,7 +369,6 @@ class HTTPClient:
|
|||||||
"nodes": nodes,
|
"nodes": nodes,
|
||||||
"edges": edges,
|
"edges": edges,
|
||||||
"tags": tags if tags is not None else [],
|
"tags": tags if tags is not None else [],
|
||||||
"published": published,
|
|
||||||
},
|
},
|
||||||
}
|
}
|
||||||
# 保存请求到文件
|
# 保存请求到文件
|
||||||
@@ -388,11 +389,51 @@ class HTTPClient:
|
|||||||
res = response.json()
|
res = response.json()
|
||||||
if "code" in res and res["code"] != 0:
|
if "code" in res and res["code"] != 0:
|
||||||
logger.error(f"导入工作流失败: {response.text}")
|
logger.error(f"导入工作流失败: {response.text}")
|
||||||
|
return res
|
||||||
|
# 导入成功后,如果需要发布则额外发起发布请求
|
||||||
|
if published:
|
||||||
|
imported_uuid = res.get("data", {}).get("uuid", workflow_uuid)
|
||||||
|
publish_res = self.workflow_publish(imported_uuid, description)
|
||||||
|
res["publish_result"] = publish_res
|
||||||
return res
|
return res
|
||||||
else:
|
else:
|
||||||
logger.error(f"导入工作流失败: {response.status_code}, {response.text}")
|
logger.error(f"导入工作流失败: {response.status_code}, {response.text}")
|
||||||
return {"code": response.status_code, "message": response.text}
|
return {"code": response.status_code, "message": response.text}
|
||||||
|
|
||||||
|
def workflow_publish(self, workflow_uuid: str, description: str = "") -> Dict[str, Any]:
|
||||||
|
"""
|
||||||
|
发布工作流
|
||||||
|
|
||||||
|
Args:
|
||||||
|
workflow_uuid: 工作流UUID
|
||||||
|
description: 工作流描述
|
||||||
|
|
||||||
|
Returns:
|
||||||
|
Dict: API响应数据
|
||||||
|
"""
|
||||||
|
payload = {
|
||||||
|
"uuid": workflow_uuid,
|
||||||
|
"description": description,
|
||||||
|
"published": True,
|
||||||
|
}
|
||||||
|
logger.info(f"正在发布工作流: {workflow_uuid}")
|
||||||
|
response = requests.patch(
|
||||||
|
f"{self.remote_addr}/lab/workflow/owner",
|
||||||
|
json=payload,
|
||||||
|
headers={"Authorization": f"Lab {self.auth}"},
|
||||||
|
timeout=60,
|
||||||
|
)
|
||||||
|
if response.status_code == 200:
|
||||||
|
res = response.json()
|
||||||
|
if "code" in res and res["code"] != 0:
|
||||||
|
logger.error(f"发布工作流失败: {response.text}")
|
||||||
|
else:
|
||||||
|
logger.info(f"工作流发布成功: {workflow_uuid}")
|
||||||
|
return res
|
||||||
|
else:
|
||||||
|
logger.error(f"发布工作流失败: {response.status_code}, {response.text}")
|
||||||
|
return {"code": response.status_code, "message": response.text}
|
||||||
|
|
||||||
|
|
||||||
# 创建默认客户端实例
|
# 创建默认客户端实例
|
||||||
http_client = HTTPClient()
|
http_client = HTTPClient()
|
||||||
|
|||||||
@@ -327,6 +327,7 @@ def job_add(req: JobAddReq) -> JobData:
|
|||||||
queue_item,
|
queue_item,
|
||||||
action_type=action_type,
|
action_type=action_type,
|
||||||
action_kwargs=action_args,
|
action_kwargs=action_args,
|
||||||
|
sample_material=req.sample_material,
|
||||||
server_info=server_info,
|
server_info=server_info,
|
||||||
)
|
)
|
||||||
|
|
||||||
|
|||||||
@@ -76,6 +76,7 @@ class JobInfo:
|
|||||||
start_time: float
|
start_time: float
|
||||||
last_update_time: float = field(default_factory=time.time)
|
last_update_time: float = field(default_factory=time.time)
|
||||||
ready_timeout: Optional[float] = None # READY状态的超时时间
|
ready_timeout: Optional[float] = None # READY状态的超时时间
|
||||||
|
always_free: bool = False # 是否为永久闲置动作(不受排队限制)
|
||||||
|
|
||||||
def update_timestamp(self):
|
def update_timestamp(self):
|
||||||
"""更新最后更新时间"""
|
"""更新最后更新时间"""
|
||||||
@@ -127,6 +128,15 @@ class DeviceActionManager:
|
|||||||
# 总是将job添加到all_jobs中
|
# 总是将job添加到all_jobs中
|
||||||
self.all_jobs[job_info.job_id] = job_info
|
self.all_jobs[job_info.job_id] = job_info
|
||||||
|
|
||||||
|
# always_free的动作不受排队限制,直接设为READY
|
||||||
|
if job_info.always_free:
|
||||||
|
job_info.status = JobStatus.READY
|
||||||
|
job_info.update_timestamp()
|
||||||
|
job_info.set_ready_timeout(10)
|
||||||
|
job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name)
|
||||||
|
logger.trace(f"[DeviceActionManager] Job {job_log} always_free, start immediately")
|
||||||
|
return True
|
||||||
|
|
||||||
# 检查是否有正在执行或准备执行的任务
|
# 检查是否有正在执行或准备执行的任务
|
||||||
if device_key in self.active_jobs:
|
if device_key in self.active_jobs:
|
||||||
# 有正在执行或准备执行的任务,加入队列
|
# 有正在执行或准备执行的任务,加入队列
|
||||||
@@ -176,11 +186,15 @@ class DeviceActionManager:
|
|||||||
logger.error(f"[DeviceActionManager] Job {job_log} is not in READY status, current: {job_info.status}")
|
logger.error(f"[DeviceActionManager] Job {job_log} is not in READY status, current: {job_info.status}")
|
||||||
return False
|
return False
|
||||||
|
|
||||||
# 检查设备上是否是这个job
|
# always_free的job不需要检查active_jobs
|
||||||
if device_key not in self.active_jobs or self.active_jobs[device_key].job_id != job_id:
|
if not job_info.always_free:
|
||||||
job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name)
|
# 检查设备上是否是这个job
|
||||||
logger.error(f"[DeviceActionManager] Job {job_log} is not the active job for {device_key}")
|
if device_key not in self.active_jobs or self.active_jobs[device_key].job_id != job_id:
|
||||||
return False
|
job_log = format_job_log(
|
||||||
|
job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name
|
||||||
|
)
|
||||||
|
logger.error(f"[DeviceActionManager] Job {job_log} is not the active job for {device_key}")
|
||||||
|
return False
|
||||||
|
|
||||||
# 开始执行任务,将状态从READY转换为STARTED
|
# 开始执行任务,将状态从READY转换为STARTED
|
||||||
job_info.status = JobStatus.STARTED
|
job_info.status = JobStatus.STARTED
|
||||||
@@ -203,6 +217,13 @@ class DeviceActionManager:
|
|||||||
job_info = self.all_jobs[job_id]
|
job_info = self.all_jobs[job_id]
|
||||||
device_key = job_info.device_action_key
|
device_key = job_info.device_action_key
|
||||||
|
|
||||||
|
# always_free的job直接清理,不影响队列
|
||||||
|
if job_info.always_free:
|
||||||
|
job_info.status = JobStatus.ENDED
|
||||||
|
job_info.update_timestamp()
|
||||||
|
del self.all_jobs[job_id]
|
||||||
|
return None
|
||||||
|
|
||||||
# 移除活跃任务
|
# 移除活跃任务
|
||||||
if device_key in self.active_jobs and self.active_jobs[device_key].job_id == job_id:
|
if device_key in self.active_jobs and self.active_jobs[device_key].job_id == job_id:
|
||||||
del self.active_jobs[device_key]
|
del self.active_jobs[device_key]
|
||||||
@@ -234,9 +255,14 @@ class DeviceActionManager:
|
|||||||
return None
|
return None
|
||||||
|
|
||||||
def get_active_jobs(self) -> List[JobInfo]:
|
def get_active_jobs(self) -> List[JobInfo]:
|
||||||
"""获取所有正在执行的任务"""
|
"""获取所有正在执行的任务(含active_jobs和always_free的STARTED job)"""
|
||||||
with self.lock:
|
with self.lock:
|
||||||
return list(self.active_jobs.values())
|
jobs = list(self.active_jobs.values())
|
||||||
|
# 补充 always_free 的 STARTED job(它们不在 active_jobs 中)
|
||||||
|
for job in self.all_jobs.values():
|
||||||
|
if job.always_free and job.status == JobStatus.STARTED and job not in jobs:
|
||||||
|
jobs.append(job)
|
||||||
|
return jobs
|
||||||
|
|
||||||
def get_queued_jobs(self) -> List[JobInfo]:
|
def get_queued_jobs(self) -> List[JobInfo]:
|
||||||
"""获取所有排队中的任务"""
|
"""获取所有排队中的任务"""
|
||||||
@@ -261,6 +287,14 @@ class DeviceActionManager:
|
|||||||
job_info = self.all_jobs[job_id]
|
job_info = self.all_jobs[job_id]
|
||||||
device_key = job_info.device_action_key
|
device_key = job_info.device_action_key
|
||||||
|
|
||||||
|
# always_free的job直接清理
|
||||||
|
if job_info.always_free:
|
||||||
|
job_info.status = JobStatus.ENDED
|
||||||
|
del self.all_jobs[job_id]
|
||||||
|
job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name)
|
||||||
|
logger.trace(f"[DeviceActionManager] Always-free job {job_log} cancelled")
|
||||||
|
return True
|
||||||
|
|
||||||
# 如果是正在执行的任务
|
# 如果是正在执行的任务
|
||||||
if device_key in self.active_jobs and self.active_jobs[device_key].job_id == job_id:
|
if device_key in self.active_jobs and self.active_jobs[device_key].job_id == job_id:
|
||||||
# 清理active job状态
|
# 清理active job状态
|
||||||
@@ -334,13 +368,18 @@ class DeviceActionManager:
|
|||||||
timeout_jobs = []
|
timeout_jobs = []
|
||||||
|
|
||||||
with self.lock:
|
with self.lock:
|
||||||
# 统计READY状态的任务数量
|
# 收集所有需要检查的 READY 任务(active_jobs + always_free READY jobs)
|
||||||
ready_jobs_count = sum(1 for job in self.active_jobs.values() if job.status == JobStatus.READY)
|
ready_candidates = list(self.active_jobs.values())
|
||||||
|
for job in self.all_jobs.values():
|
||||||
|
if job.always_free and job.status == JobStatus.READY and job not in ready_candidates:
|
||||||
|
ready_candidates.append(job)
|
||||||
|
|
||||||
|
ready_jobs_count = sum(1 for job in ready_candidates if job.status == JobStatus.READY)
|
||||||
if ready_jobs_count > 0:
|
if ready_jobs_count > 0:
|
||||||
logger.trace(f"[DeviceActionManager] Checking {ready_jobs_count} READY jobs for timeout") # type: ignore # noqa: E501
|
logger.trace(f"[DeviceActionManager] Checking {ready_jobs_count} READY jobs for timeout") # type: ignore # noqa: E501
|
||||||
|
|
||||||
# 找到所有超时的READY任务(只检测,不处理)
|
# 找到所有超时的READY任务(只检测,不处理)
|
||||||
for job_info in self.active_jobs.values():
|
for job_info in ready_candidates:
|
||||||
if job_info.is_ready_timeout():
|
if job_info.is_ready_timeout():
|
||||||
timeout_jobs.append(job_info)
|
timeout_jobs.append(job_info)
|
||||||
job_log = format_job_log(
|
job_log = format_job_log(
|
||||||
@@ -545,7 +584,7 @@ class MessageProcessor:
|
|||||||
try:
|
try:
|
||||||
message_str = json.dumps(msg, ensure_ascii=False)
|
message_str = json.dumps(msg, ensure_ascii=False)
|
||||||
await self.websocket.send(message_str)
|
await self.websocket.send(message_str)
|
||||||
logger.trace(f"[MessageProcessor] Message sent: {msg.get('action', 'unknown')}") # type: ignore # noqa: E501
|
# logger.trace(f"[MessageProcessor] Message sent: {msg.get('action', 'unknown')}") # type: ignore # noqa: E501
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
logger.error(f"[MessageProcessor] Failed to send message: {str(e)}")
|
logger.error(f"[MessageProcessor] Failed to send message: {str(e)}")
|
||||||
logger.error(traceback.format_exc())
|
logger.error(traceback.format_exc())
|
||||||
@@ -608,6 +647,24 @@ class MessageProcessor:
|
|||||||
if host_node:
|
if host_node:
|
||||||
host_node.handle_pong_response(pong_data)
|
host_node.handle_pong_response(pong_data)
|
||||||
|
|
||||||
|
def _check_action_always_free(self, device_id: str, action_name: str) -> bool:
|
||||||
|
"""检查该action是否标记为always_free,通过HostNode统一的_action_value_mappings查找"""
|
||||||
|
try:
|
||||||
|
host_node = HostNode.get_instance(0)
|
||||||
|
if not host_node:
|
||||||
|
return False
|
||||||
|
# noinspection PyProtectedMember
|
||||||
|
action_mappings = host_node._action_value_mappings.get(device_id)
|
||||||
|
if not action_mappings:
|
||||||
|
return False
|
||||||
|
# 尝试直接匹配或 auto- 前缀匹配
|
||||||
|
for key in [action_name, f"auto-{action_name}"]:
|
||||||
|
if key in action_mappings:
|
||||||
|
return action_mappings[key].get("always_free", False)
|
||||||
|
return False
|
||||||
|
except Exception:
|
||||||
|
return False
|
||||||
|
|
||||||
async def _handle_query_action_state(self, data: Dict[str, Any]):
|
async def _handle_query_action_state(self, data: Dict[str, Any]):
|
||||||
"""处理query_action_state消息"""
|
"""处理query_action_state消息"""
|
||||||
device_id = data.get("device_id", "")
|
device_id = data.get("device_id", "")
|
||||||
@@ -622,6 +679,9 @@ class MessageProcessor:
|
|||||||
|
|
||||||
device_action_key = f"/devices/{device_id}/{action_name}"
|
device_action_key = f"/devices/{device_id}/{action_name}"
|
||||||
|
|
||||||
|
# 检查action是否为always_free
|
||||||
|
action_always_free = self._check_action_always_free(device_id, action_name)
|
||||||
|
|
||||||
# 创建任务信息
|
# 创建任务信息
|
||||||
job_info = JobInfo(
|
job_info = JobInfo(
|
||||||
job_id=job_id,
|
job_id=job_id,
|
||||||
@@ -631,6 +691,7 @@ class MessageProcessor:
|
|||||||
device_action_key=device_action_key,
|
device_action_key=device_action_key,
|
||||||
status=JobStatus.QUEUE,
|
status=JobStatus.QUEUE,
|
||||||
start_time=time.time(),
|
start_time=time.time(),
|
||||||
|
always_free=action_always_free,
|
||||||
)
|
)
|
||||||
|
|
||||||
# 添加到设备管理器
|
# 添加到设备管理器
|
||||||
@@ -657,6 +718,8 @@ class MessageProcessor:
|
|||||||
async def _handle_job_start(self, data: Dict[str, Any]):
|
async def _handle_job_start(self, data: Dict[str, Any]):
|
||||||
"""处理job_start消息"""
|
"""处理job_start消息"""
|
||||||
try:
|
try:
|
||||||
|
if not data.get("sample_material"):
|
||||||
|
data["sample_material"] = {}
|
||||||
req = JobAddReq(**data)
|
req = JobAddReq(**data)
|
||||||
|
|
||||||
job_log = format_job_log(req.job_id, req.task_id, req.device_id, req.action)
|
job_log = format_job_log(req.job_id, req.task_id, req.device_id, req.action)
|
||||||
@@ -688,6 +751,7 @@ class MessageProcessor:
|
|||||||
queue_item,
|
queue_item,
|
||||||
action_type=req.action_type,
|
action_type=req.action_type,
|
||||||
action_kwargs=req.action_args,
|
action_kwargs=req.action_args,
|
||||||
|
sample_material=req.sample_material,
|
||||||
server_info=req.server_info,
|
server_info=req.server_info,
|
||||||
)
|
)
|
||||||
|
|
||||||
@@ -1120,6 +1184,11 @@ class QueueProcessor:
|
|||||||
logger.debug(f"[QueueProcessor] Sending busy status for {len(queued_jobs)} queued jobs")
|
logger.debug(f"[QueueProcessor] Sending busy status for {len(queued_jobs)} queued jobs")
|
||||||
|
|
||||||
for job_info in queued_jobs:
|
for job_info in queued_jobs:
|
||||||
|
# 快照可能已过期:在遍历过程中 end_job() 可能已将此 job 移至 READY,
|
||||||
|
# 此时不应再发送 busy/need_more,否则会覆盖已发出的 free=True 通知
|
||||||
|
if job_info.status != JobStatus.QUEUE:
|
||||||
|
continue
|
||||||
|
|
||||||
message = {
|
message = {
|
||||||
"action": "report_action_state",
|
"action": "report_action_state",
|
||||||
"data": {
|
"data": {
|
||||||
@@ -1301,7 +1370,7 @@ class WebSocketClient(BaseCommunicationClient):
|
|||||||
},
|
},
|
||||||
}
|
}
|
||||||
self.message_processor.send_message(message)
|
self.message_processor.send_message(message)
|
||||||
logger.trace(f"[WebSocketClient] Device status published: {device_id}.{property_name}")
|
# logger.trace(f"[WebSocketClient] Device status published: {device_id}.{property_name}")
|
||||||
|
|
||||||
def publish_job_status(
|
def publish_job_status(
|
||||||
self, feedback_data: dict, item: QueueItem, status: str, return_info: Optional[dict] = None
|
self, feedback_data: dict, item: QueueItem, status: str, return_info: Optional[dict] = None
|
||||||
|
|||||||
@@ -95,8 +95,29 @@ def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
|
|||||||
return total_volume
|
return total_volume
|
||||||
|
|
||||||
|
|
||||||
def is_integrated_pump(node_name):
|
def is_integrated_pump(node_class: str, node_name: str = "") -> bool:
|
||||||
return "pump" in node_name and "valve" in node_name
|
"""
|
||||||
|
判断是否为泵阀一体设备
|
||||||
|
"""
|
||||||
|
class_lower = (node_class or "").lower()
|
||||||
|
name_lower = (node_name or "").lower()
|
||||||
|
|
||||||
|
if "pump" not in class_lower and "pump" not in name_lower:
|
||||||
|
return False
|
||||||
|
|
||||||
|
integrated_markers = [
|
||||||
|
"valve",
|
||||||
|
"pump_valve",
|
||||||
|
"pumpvalve",
|
||||||
|
"integrated",
|
||||||
|
"transfer_pump",
|
||||||
|
]
|
||||||
|
|
||||||
|
for marker in integrated_markers:
|
||||||
|
if marker in class_lower or marker in name_lower:
|
||||||
|
return True
|
||||||
|
|
||||||
|
return False
|
||||||
|
|
||||||
|
|
||||||
def find_connected_pump(G, valve_node):
|
def find_connected_pump(G, valve_node):
|
||||||
@@ -186,7 +207,9 @@ def build_pump_valve_maps(G, pump_backbone):
|
|||||||
debug_print(f"🔧 过滤后的骨架: {filtered_backbone}")
|
debug_print(f"🔧 过滤后的骨架: {filtered_backbone}")
|
||||||
|
|
||||||
for node in filtered_backbone:
|
for node in filtered_backbone:
|
||||||
if is_integrated_pump(G.nodes[node]["class"]):
|
node_data = G.nodes.get(node, {})
|
||||||
|
node_class = node_data.get("class", "") or ""
|
||||||
|
if is_integrated_pump(node_class, node):
|
||||||
pumps_from_node[node] = node
|
pumps_from_node[node] = node
|
||||||
valve_from_node[node] = node
|
valve_from_node[node] = node
|
||||||
debug_print(f" - 集成泵-阀: {node}")
|
debug_print(f" - 集成泵-阀: {node}")
|
||||||
|
|||||||
@@ -23,6 +23,7 @@ class BasicConfig:
|
|||||||
disable_browser = False # 禁止浏览器自动打开
|
disable_browser = False # 禁止浏览器自动打开
|
||||||
port = 8002 # 本地HTTP服务
|
port = 8002 # 本地HTTP服务
|
||||||
check_mode = False # CI 检查模式,用于验证 registry 导入和文件一致性
|
check_mode = False # CI 检查模式,用于验证 registry 导入和文件一致性
|
||||||
|
test_mode = False # 测试模式,所有动作不实际执行,返回模拟结果
|
||||||
# 'TRACE', 'DEBUG', 'INFO', 'WARNING', 'ERROR', 'CRITICAL'
|
# 'TRACE', 'DEBUG', 'INFO', 'WARNING', 'ERROR', 'CRITICAL'
|
||||||
log_level: Literal["TRACE", "DEBUG", "INFO", "WARNING", "ERROR", "CRITICAL"] = "DEBUG"
|
log_level: Literal["TRACE", "DEBUG", "INFO", "WARNING", "ERROR", "CRITICAL"] = "DEBUG"
|
||||||
|
|
||||||
@@ -145,5 +146,5 @@ def load_config(config_path=None):
|
|||||||
traceback.print_exc()
|
traceback.print_exc()
|
||||||
exit(1)
|
exit(1)
|
||||||
else:
|
else:
|
||||||
config_path = os.path.join(os.path.dirname(__file__), "local_config.py")
|
config_path = os.path.join(os.path.dirname(__file__), "example_config.py")
|
||||||
load_config(config_path)
|
load_config(config_path)
|
||||||
|
|||||||
@@ -1,15 +1,11 @@
|
|||||||
from __future__ import annotations
|
from __future__ import annotations
|
||||||
|
|
||||||
import asyncio
|
|
||||||
import time
|
import time
|
||||||
import traceback
|
import traceback
|
||||||
from collections import Counter
|
from collections import Counter
|
||||||
from typing import List, Sequence, Optional, Literal, Union, Iterator, Dict, Any, Callable, Set, cast
|
from typing import List, Sequence, Optional, Literal, Union, Iterator, Dict, Any, Callable, Set, cast
|
||||||
|
|
||||||
from typing_extensions import TypedDict
|
|
||||||
from pylabrobot.liquid_handling import LiquidHandler, LiquidHandlerBackend, LiquidHandlerChatterboxBackend, Strictness
|
from pylabrobot.liquid_handling import LiquidHandler, LiquidHandlerBackend, LiquidHandlerChatterboxBackend, Strictness
|
||||||
from unilabos.devices.liquid_handling.rviz_backend import UniLiquidHandlerRvizBackend
|
|
||||||
from unilabos.devices.liquid_handling.laiyu.backend.laiyu_v_backend import UniLiquidHandlerLaiyuBackend
|
|
||||||
from pylabrobot.liquid_handling.liquid_handler import TipPresenceProbingMethod
|
from pylabrobot.liquid_handling.liquid_handler import TipPresenceProbingMethod
|
||||||
from pylabrobot.liquid_handling.standard import GripDirection
|
from pylabrobot.liquid_handling.standard import GripDirection
|
||||||
from pylabrobot.resources import (
|
from pylabrobot.resources import (
|
||||||
@@ -25,28 +21,40 @@ from pylabrobot.resources import (
|
|||||||
ResourceHolder,
|
ResourceHolder,
|
||||||
Lid,
|
Lid,
|
||||||
Trash,
|
Trash,
|
||||||
Tip,
|
Tip, TubeRack,
|
||||||
)
|
)
|
||||||
|
from typing_extensions import TypedDict
|
||||||
|
|
||||||
|
from unilabos.devices.liquid_handling.rviz_backend import UniLiquidHandlerRvizBackend
|
||||||
from unilabos.registry.placeholder_type import ResourceSlot
|
from unilabos.registry.placeholder_type import ResourceSlot
|
||||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
|
from unilabos.resources.resource_tracker import (
|
||||||
from unilabos.resources.resource_tracker import ResourceTreeSet
|
ResourceTreeSet,
|
||||||
|
ResourceDict,
|
||||||
|
EXTRA_SAMPLE_UUID,
|
||||||
|
EXTRA_UNILABOS_SAMPLE_UUID,
|
||||||
|
)
|
||||||
|
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, ROS2DeviceNode
|
||||||
|
|
||||||
|
|
||||||
class SimpleReturn(TypedDict):
|
class SimpleReturn(TypedDict):
|
||||||
samples: list
|
samples: List[List[ResourceDict]]
|
||||||
volumes: list
|
volumes: List[float]
|
||||||
|
|
||||||
|
|
||||||
class SetLiquidReturn(TypedDict):
|
class SetLiquidReturn(TypedDict):
|
||||||
wells: list
|
wells: List[List[ResourceDict]]
|
||||||
volumes: list
|
volumes: List[float]
|
||||||
|
|
||||||
|
|
||||||
class SetLiquidFromPlateReturn(TypedDict):
|
class SetLiquidFromPlateReturn(TypedDict):
|
||||||
plate: list
|
plate: List[List[ResourceDict]]
|
||||||
wells: list
|
wells: List[List[ResourceDict]]
|
||||||
volumes: list
|
volumes: List[float]
|
||||||
|
|
||||||
|
|
||||||
|
class TransferLiquidReturn(TypedDict):
|
||||||
|
sources: List[List[ResourceDict]]
|
||||||
|
targets: List[List[ResourceDict]]
|
||||||
|
|
||||||
|
|
||||||
class LiquidHandlerMiddleware(LiquidHandler):
|
class LiquidHandlerMiddleware(LiquidHandler):
|
||||||
@@ -228,12 +236,11 @@ class LiquidHandlerMiddleware(LiquidHandler):
|
|||||||
res_samples = []
|
res_samples = []
|
||||||
res_volumes = []
|
res_volumes = []
|
||||||
for resource, volume, channel in zip(resources, vols, use_channels):
|
for resource, volume, channel in zip(resources, vols, use_channels):
|
||||||
res_samples.append(
|
sample_uuid_value = resource.unilabos_extra.get(EXTRA_SAMPLE_UUID, None)
|
||||||
{"name": resource.name, "sample_uuid": resource.unilabos_extra.get("sample_uuid", None)}
|
res_samples.append({"name": resource.name, EXTRA_SAMPLE_UUID: sample_uuid_value})
|
||||||
)
|
|
||||||
res_volumes.append(volume)
|
res_volumes.append(volume)
|
||||||
self.pending_liquids_dict[channel] = {
|
self.pending_liquids_dict[channel] = {
|
||||||
"sample_uuid": resource.unilabos_extra.get("sample_uuid", None),
|
EXTRA_SAMPLE_UUID: sample_uuid_value,
|
||||||
"volume": volume,
|
"volume": volume,
|
||||||
}
|
}
|
||||||
return SimpleReturn(samples=res_samples, volumes=res_volumes)
|
return SimpleReturn(samples=res_samples, volumes=res_volumes)
|
||||||
@@ -275,10 +282,10 @@ class LiquidHandlerMiddleware(LiquidHandler):
|
|||||||
res_samples = []
|
res_samples = []
|
||||||
res_volumes = []
|
res_volumes = []
|
||||||
for resource, volume, channel in zip(resources, vols, use_channels):
|
for resource, volume, channel in zip(resources, vols, use_channels):
|
||||||
res_uuid = self.pending_liquids_dict[channel]["sample_uuid"]
|
res_uuid = self.pending_liquids_dict[channel][EXTRA_SAMPLE_UUID]
|
||||||
self.pending_liquids_dict[channel]["volume"] -= volume
|
self.pending_liquids_dict[channel]["volume"] -= volume
|
||||||
resource.unilabos_extra["sample_uuid"] = res_uuid
|
resource.unilabos_extra[EXTRA_SAMPLE_UUID] = res_uuid
|
||||||
res_samples.append({"name": resource.name, "sample_uuid": res_uuid})
|
res_samples.append({"name": resource.name, EXTRA_SAMPLE_UUID: res_uuid})
|
||||||
res_volumes.append(volume)
|
res_volumes.append(volume)
|
||||||
|
|
||||||
return SimpleReturn(samples=res_samples, volumes=res_volumes)
|
return SimpleReturn(samples=res_samples, volumes=res_volumes)
|
||||||
@@ -682,16 +689,20 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
wells=ResourceTreeSet.from_plr_resources(wells, known_newly_created=False).dump(), volumes=res_volumes # type: ignore
|
wells=ResourceTreeSet.from_plr_resources(wells, known_newly_created=False).dump(), volumes=res_volumes # type: ignore
|
||||||
)
|
)
|
||||||
|
|
||||||
@classmethod
|
|
||||||
def set_liquid_from_plate(
|
def set_liquid_from_plate(
|
||||||
cls, plate: ResourceSlot, well_names: list[str], liquid_names: list[str], volumes: list[float]
|
self, plate: ResourceSlot, well_names: list[str], liquid_names: list[str], volumes: list[float]
|
||||||
) -> SetLiquidFromPlateReturn:
|
) -> SetLiquidFromPlateReturn:
|
||||||
"""Set the liquid in wells of a plate by well names (e.g., A1, A2, B3).
|
"""Set the liquid in wells of a plate by well names (e.g., A1, A2, B3).
|
||||||
|
|
||||||
如果 liquid_names 和 volumes 为空,但 plate 和 well_names 不为空,直接返回 plate 和 wells。
|
如果 liquid_names 和 volumes 为空,但 plate 和 well_names 不为空,直接返回 plate 和 wells。
|
||||||
"""
|
"""
|
||||||
|
assert issubclass(plate.__class__, Plate) or issubclass(plate.__class__, TubeRack) , f"plate must be a Plate, now: {type(plate)}"
|
||||||
|
plate: Union[Plate, TubeRack]
|
||||||
# 根据 well_names 获取对应的 Well 对象
|
# 根据 well_names 获取对应的 Well 对象
|
||||||
wells = [plate.get_well(name) for name in well_names]
|
if issubclass(plate.__class__, Plate):
|
||||||
|
wells = [plate.get_well(name) for name in well_names]
|
||||||
|
elif issubclass(plate.__class__, TubeRack):
|
||||||
|
wells = [plate.get_tube(name) for name in well_names]
|
||||||
res_volumes = []
|
res_volumes = []
|
||||||
|
|
||||||
# 如果 liquid_names 和 volumes 都为空,直接返回
|
# 如果 liquid_names 和 volumes 都为空,直接返回
|
||||||
@@ -706,6 +717,14 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
well.set_liquids([(liquid_name, volume)]) # type: ignore
|
well.set_liquids([(liquid_name, volume)]) # type: ignore
|
||||||
res_volumes.append(volume)
|
res_volumes.append(volume)
|
||||||
|
|
||||||
|
task = ROS2DeviceNode.run_async_func(self._ros_node.update_resource, True, **{"resources": wells})
|
||||||
|
submit_time = time.time()
|
||||||
|
while not task.done():
|
||||||
|
if time.time() - submit_time > 10:
|
||||||
|
self._ros_node.lab_logger().info(f"set_liquid_from_plate {plate} 超时")
|
||||||
|
break
|
||||||
|
time.sleep(0.01)
|
||||||
|
|
||||||
return SetLiquidFromPlateReturn(
|
return SetLiquidFromPlateReturn(
|
||||||
plate=ResourceTreeSet.from_plr_resources([plate], known_newly_created=False).dump(), # type: ignore
|
plate=ResourceTreeSet.from_plr_resources([plate], known_newly_created=False).dump(), # type: ignore
|
||||||
wells=ResourceTreeSet.from_plr_resources(wells, known_newly_created=False).dump(), # type: ignore
|
wells=ResourceTreeSet.from_plr_resources(wells, known_newly_created=False).dump(), # type: ignore
|
||||||
@@ -1111,7 +1130,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
mix_liquid_height: Optional[float] = None,
|
mix_liquid_height: Optional[float] = None,
|
||||||
delays: Optional[List[int]] = None,
|
delays: Optional[List[int]] = None,
|
||||||
none_keys: List[str] = [],
|
none_keys: List[str] = [],
|
||||||
):
|
) -> TransferLiquidReturn:
|
||||||
"""Transfer liquid with automatic mode detection.
|
"""Transfer liquid with automatic mode detection.
|
||||||
|
|
||||||
Supports three transfer modes:
|
Supports three transfer modes:
|
||||||
@@ -1251,6 +1270,11 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
|||||||
"Supported modes: 1->N, N->1, or N->N."
|
"Supported modes: 1->N, N->1, or N->N."
|
||||||
)
|
)
|
||||||
|
|
||||||
|
return TransferLiquidReturn(
|
||||||
|
sources=ResourceTreeSet.from_plr_resources(list(sources), known_newly_created=False).dump(), # type: ignore
|
||||||
|
targets=ResourceTreeSet.from_plr_resources(list(targets), known_newly_created=False).dump(), # type: ignore
|
||||||
|
)
|
||||||
|
|
||||||
async def _transfer_one_to_one(
|
async def _transfer_one_to_one(
|
||||||
self,
|
self,
|
||||||
sources: Sequence[Container],
|
sources: Sequence[Container],
|
||||||
|
|||||||
@@ -52,6 +52,7 @@ from unilabos.devices.liquid_handling.liquid_handler_abstract import (
|
|||||||
SimpleReturn,
|
SimpleReturn,
|
||||||
SetLiquidReturn,
|
SetLiquidReturn,
|
||||||
SetLiquidFromPlateReturn,
|
SetLiquidFromPlateReturn,
|
||||||
|
TransferLiquidReturn,
|
||||||
)
|
)
|
||||||
from unilabos.registry.placeholder_type import ResourceSlot
|
from unilabos.registry.placeholder_type import ResourceSlot
|
||||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
|
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
|
||||||
@@ -90,7 +91,7 @@ class PRCXI9300Deck(Deck):
|
|||||||
"""
|
"""
|
||||||
|
|
||||||
def __init__(self, name: str, size_x: float, size_y: float, size_z: float, **kwargs):
|
def __init__(self, name: str, size_x: float, size_y: float, size_z: float, **kwargs):
|
||||||
super().__init__(name, size_x, size_y, size_z)
|
super().__init__(size_x, size_y, size_z, name)
|
||||||
self.slots = [None] * 16 # PRCXI 9300/9320 最大有 16 个槽位
|
self.slots = [None] * 16 # PRCXI 9300/9320 最大有 16 个槽位
|
||||||
self.slot_locations = [Coordinate(0, 0, 0)] * 16
|
self.slot_locations = [Coordinate(0, 0, 0)] * 16
|
||||||
|
|
||||||
@@ -154,25 +155,29 @@ class PRCXI9300Plate(Plate):
|
|||||||
**kwargs,
|
**kwargs,
|
||||||
):
|
):
|
||||||
# 如果 ordered_items 不为 None,直接使用
|
# 如果 ordered_items 不为 None,直接使用
|
||||||
|
items = None
|
||||||
|
ordering_param = None
|
||||||
if ordered_items is not None:
|
if ordered_items is not None:
|
||||||
items = ordered_items
|
items = ordered_items
|
||||||
elif ordering is not None:
|
elif ordering is not None:
|
||||||
# 检查 ordering 中的值是否是字符串(从 JSON 反序列化时的情况)
|
# 检查 ordering 中的值是否是字符串(从 JSON 反序列化时的情况)
|
||||||
# 如果是字符串,说明这是位置名称,需要让 Plate 自己创建 Well 对象
|
# 如果是字符串,说明这是位置名称,需要让 Plate 自己创建 Well 对象
|
||||||
# 我们只传递位置信息(键),不传递值,使用 ordering 参数
|
# 我们只传递位置信息(键),不传递值,使用 ordering 参数
|
||||||
if ordering and isinstance(next(iter(ordering.values()), None), str):
|
if ordering:
|
||||||
# ordering 的值是字符串,只使用键(位置信息)创建新的 OrderedDict
|
values = list(ordering.values())
|
||||||
# 传递 ordering 参数而不是 ordered_items,让 Plate 自己创建 Well 对象
|
value = values[0]
|
||||||
items = None
|
if isinstance(value, str):
|
||||||
# 使用 ordering 参数,只包含位置信息(键)
|
# ordering 的值是字符串,只使用键(位置信息)创建新的 OrderedDict
|
||||||
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
# 传递 ordering 参数而不是 ordered_items,让 Plate 自己创建 Well 对象
|
||||||
|
items = None
|
||||||
|
# 使用 ordering 参数,只包含位置信息(键)
|
||||||
|
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
||||||
|
elif value is None:
|
||||||
|
ordering_param = ordering
|
||||||
else:
|
else:
|
||||||
# ordering 的值已经是对象,可以直接使用
|
# ordering 的值已经是对象,可以直接使用
|
||||||
items = ordering
|
items = ordering
|
||||||
ordering_param = None
|
ordering_param = None
|
||||||
else:
|
|
||||||
items = None
|
|
||||||
ordering_param = None
|
|
||||||
|
|
||||||
# 根据情况传递不同的参数
|
# 根据情况传递不同的参数
|
||||||
if items is not None:
|
if items is not None:
|
||||||
@@ -243,14 +248,15 @@ class PRCXI9300TipRack(TipRack):
|
|||||||
if ordered_items is not None:
|
if ordered_items is not None:
|
||||||
items = ordered_items
|
items = ordered_items
|
||||||
elif ordering is not None:
|
elif ordering is not None:
|
||||||
# 检查 ordering 中的值是否是字符串(从 JSON 反序列化时的情况)
|
# 检查 ordering 中的值类型来决定如何处理:
|
||||||
# 如果是字符串,说明这是位置名称,需要让 TipRack 自己创建 Tip 对象
|
# - 字符串值(从 JSON 反序列化): 只用键创建 ordering_param
|
||||||
# 我们只传递位置信息(键),不传递值,使用 ordering 参数
|
# - None 值(从第二次往返序列化): 同样只用键创建 ordering_param
|
||||||
if ordering and isinstance(next(iter(ordering.values()), None), str):
|
# - 对象值(已经是实际的 Resource 对象): 直接作为 ordered_items 使用
|
||||||
# ordering 的值是字符串,只使用键(位置信息)创建新的 OrderedDict
|
first_val = next(iter(ordering.values()), None) if ordering else None
|
||||||
|
if not ordering or first_val is None or isinstance(first_val, str):
|
||||||
|
# ordering 的值是字符串或 None,只使用键(位置信息)创建新的 OrderedDict
|
||||||
# 传递 ordering 参数而不是 ordered_items,让 TipRack 自己创建 Tip 对象
|
# 传递 ordering 参数而不是 ordered_items,让 TipRack 自己创建 Tip 对象
|
||||||
items = None
|
items = None
|
||||||
# 使用 ordering 参数,只包含位置信息(键)
|
|
||||||
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
||||||
else:
|
else:
|
||||||
# ordering 的值已经是对象,可以直接使用
|
# ordering 的值已经是对象,可以直接使用
|
||||||
@@ -392,14 +398,15 @@ class PRCXI9300TubeRack(TubeRack):
|
|||||||
items_to_pass = ordered_items
|
items_to_pass = ordered_items
|
||||||
ordering_param = None
|
ordering_param = None
|
||||||
elif ordering is not None:
|
elif ordering is not None:
|
||||||
# 检查 ordering 中的值是否是字符串(从 JSON 反序列化时的情况)
|
# 检查 ordering 中的值类型来决定如何处理:
|
||||||
# 如果是字符串,说明这是位置名称,需要让 TubeRack 自己创建 Tube 对象
|
# - 字符串值(从 JSON 反序列化): 只用键创建 ordering_param
|
||||||
# 我们只传递位置信息(键),不传递值,使用 ordering 参数
|
# - None 值(从第二次往返序列化): 同样只用键创建 ordering_param
|
||||||
if ordering and isinstance(next(iter(ordering.values()), None), str):
|
# - 对象值(已经是实际的 Resource 对象): 直接作为 ordered_items 使用
|
||||||
# ordering 的值是字符串,只使用键(位置信息)创建新的 OrderedDict
|
first_val = next(iter(ordering.values()), None) if ordering else None
|
||||||
|
if not ordering or first_val is None or isinstance(first_val, str):
|
||||||
|
# ordering 的值是字符串或 None,只使用键(位置信息)创建新的 OrderedDict
|
||||||
# 传递 ordering 参数而不是 ordered_items,让 TubeRack 自己创建 Tube 对象
|
# 传递 ordering 参数而不是 ordered_items,让 TubeRack 自己创建 Tube 对象
|
||||||
items_to_pass = None
|
items_to_pass = None
|
||||||
# 使用 ordering 参数,只包含位置信息(键)
|
|
||||||
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
||||||
else:
|
else:
|
||||||
# ordering 的值已经是对象,可以直接使用
|
# ordering 的值已经是对象,可以直接使用
|
||||||
@@ -713,7 +720,7 @@ class PRCXI9300Handler(LiquidHandlerAbstract):
|
|||||||
mix_liquid_height: Optional[float] = None,
|
mix_liquid_height: Optional[float] = None,
|
||||||
delays: Optional[List[int]] = None,
|
delays: Optional[List[int]] = None,
|
||||||
none_keys: List[str] = [],
|
none_keys: List[str] = [],
|
||||||
):
|
) -> TransferLiquidReturn:
|
||||||
return await super().transfer_liquid(
|
return await super().transfer_liquid(
|
||||||
sources,
|
sources,
|
||||||
targets,
|
targets,
|
||||||
|
|||||||
@@ -19,10 +19,11 @@ from rclpy.node import Node
|
|||||||
import re
|
import re
|
||||||
|
|
||||||
class LiquidHandlerJointPublisher(BaseROS2DeviceNode):
|
class LiquidHandlerJointPublisher(BaseROS2DeviceNode):
|
||||||
def __init__(self,resources_config:list, resource_tracker, rate=50, device_id:str = "lh_joint_publisher", **kwargs):
|
def __init__(self,resources_config:list, resource_tracker, rate=50, device_id:str = "lh_joint_publisher", registry_name: str = "lh_joint_publisher", **kwargs):
|
||||||
super().__init__(
|
super().__init__(
|
||||||
driver_instance=self,
|
driver_instance=self,
|
||||||
device_id=device_id,
|
device_id=device_id,
|
||||||
|
registry_name=registry_name,
|
||||||
status_types={},
|
status_types={},
|
||||||
action_value_mappings={},
|
action_value_mappings={},
|
||||||
hardware_interface={},
|
hardware_interface={},
|
||||||
|
|||||||
@@ -15,35 +15,35 @@ class VirtualPumpMode(Enum):
|
|||||||
|
|
||||||
class VirtualTransferPump:
|
class VirtualTransferPump:
|
||||||
"""虚拟转移泵类 - 模拟泵的基本功能,无需实际硬件 🚰"""
|
"""虚拟转移泵类 - 模拟泵的基本功能,无需实际硬件 🚰"""
|
||||||
|
|
||||||
_ros_node: BaseROS2DeviceNode
|
_ros_node: BaseROS2DeviceNode
|
||||||
|
|
||||||
def __init__(self, device_id: str = None, config: dict = None, **kwargs):
|
def __init__(self, device_id: str = None, config: dict = None, **kwargs):
|
||||||
"""
|
"""
|
||||||
初始化虚拟转移泵
|
初始化虚拟转移泵
|
||||||
|
|
||||||
Args:
|
Args:
|
||||||
device_id: 设备ID
|
device_id: 设备ID
|
||||||
config: 配置字典,包含max_volume, port等参数
|
config: 配置字典,包含max_volume, port等参数
|
||||||
**kwargs: 其他参数,确保兼容性
|
**kwargs: 其他参数,确保兼容性
|
||||||
"""
|
"""
|
||||||
self.device_id = device_id or "virtual_transfer_pump"
|
self.device_id = device_id or "virtual_transfer_pump"
|
||||||
|
|
||||||
# 从config或kwargs中获取参数,确保类型正确
|
# 从config或kwargs中获取参数,确保类型正确
|
||||||
if config:
|
if config:
|
||||||
self.max_volume = float(config.get('max_volume', 25.0))
|
self.max_volume = float(config.get("max_volume", 25.0))
|
||||||
self.port = config.get('port', 'VIRTUAL')
|
self.port = config.get("port", "VIRTUAL")
|
||||||
else:
|
else:
|
||||||
self.max_volume = float(kwargs.get('max_volume', 25.0))
|
self.max_volume = float(kwargs.get("max_volume", 25.0))
|
||||||
self.port = kwargs.get('port', 'VIRTUAL')
|
self.port = kwargs.get("port", "VIRTUAL")
|
||||||
|
|
||||||
self._transfer_rate = float(kwargs.get('transfer_rate', 0))
|
self._transfer_rate = float(kwargs.get("transfer_rate", 0))
|
||||||
self.mode = kwargs.get('mode', VirtualPumpMode.Normal)
|
self.mode = kwargs.get("mode", VirtualPumpMode.Normal)
|
||||||
|
|
||||||
# 状态变量 - 确保都是正确类型
|
# 状态变量 - 确保都是正确类型
|
||||||
self._status = "Idle"
|
self._status = "Idle"
|
||||||
self._position = 0.0 # float
|
self._position = 0.0 # float
|
||||||
self._max_velocity = 5.0 # float
|
self._max_velocity = 5.0 # float
|
||||||
self._current_volume = 0.0 # float
|
self._current_volume = 0.0 # float
|
||||||
|
|
||||||
# 🚀 新增:快速模式设置 - 大幅缩短执行时间
|
# 🚀 新增:快速模式设置 - 大幅缩短执行时间
|
||||||
@@ -52,14 +52,16 @@ class VirtualTransferPump:
|
|||||||
self._fast_dispense_time = 1.0 # 快速喷射时间(秒)
|
self._fast_dispense_time = 1.0 # 快速喷射时间(秒)
|
||||||
|
|
||||||
self.logger = logging.getLogger(f"VirtualTransferPump.{self.device_id}")
|
self.logger = logging.getLogger(f"VirtualTransferPump.{self.device_id}")
|
||||||
|
|
||||||
print(f"🚰 === 虚拟转移泵 {self.device_id} 已创建 === ✨")
|
print(f"🚰 === 虚拟转移泵 {self.device_id} 已创建 === ✨")
|
||||||
print(f"💨 快速模式: {'启用' if self._fast_mode else '禁用'} | 移动时间: {self._fast_move_time}s | 喷射时间: {self._fast_dispense_time}s")
|
print(
|
||||||
|
f"💨 快速模式: {'启用' if self._fast_mode else '禁用'} | 移动时间: {self._fast_move_time}s | 喷射时间: {self._fast_dispense_time}s"
|
||||||
|
)
|
||||||
print(f"📊 最大容量: {self.max_volume}mL | 端口: {self.port}")
|
print(f"📊 最大容量: {self.max_volume}mL | 端口: {self.port}")
|
||||||
|
|
||||||
def post_init(self, ros_node: BaseROS2DeviceNode):
|
def post_init(self, ros_node: BaseROS2DeviceNode):
|
||||||
self._ros_node = ros_node
|
self._ros_node = ros_node
|
||||||
|
|
||||||
async def initialize(self) -> bool:
|
async def initialize(self) -> bool:
|
||||||
"""初始化虚拟泵 🚀"""
|
"""初始化虚拟泵 🚀"""
|
||||||
self.logger.info(f"🔧 初始化虚拟转移泵 {self.device_id} ✨")
|
self.logger.info(f"🔧 初始化虚拟转移泵 {self.device_id} ✨")
|
||||||
@@ -68,33 +70,33 @@ class VirtualTransferPump:
|
|||||||
self._current_volume = 0.0
|
self._current_volume = 0.0
|
||||||
self.logger.info(f"✅ 转移泵 {self.device_id} 初始化完成 🚰")
|
self.logger.info(f"✅ 转移泵 {self.device_id} 初始化完成 🚰")
|
||||||
return True
|
return True
|
||||||
|
|
||||||
async def cleanup(self) -> bool:
|
async def cleanup(self) -> bool:
|
||||||
"""清理虚拟泵 🧹"""
|
"""清理虚拟泵 🧹"""
|
||||||
self.logger.info(f"🧹 清理虚拟转移泵 {self.device_id} 🔚")
|
self.logger.info(f"🧹 清理虚拟转移泵 {self.device_id} 🔚")
|
||||||
self._status = "Idle"
|
self._status = "Idle"
|
||||||
self.logger.info(f"✅ 转移泵 {self.device_id} 清理完成 💤")
|
self.logger.info(f"✅ 转移泵 {self.device_id} 清理完成 💤")
|
||||||
return True
|
return True
|
||||||
|
|
||||||
# 基本属性
|
# 基本属性
|
||||||
@property
|
@property
|
||||||
def status(self) -> str:
|
def status(self) -> str:
|
||||||
return self._status
|
return self._status
|
||||||
|
|
||||||
@property
|
@property
|
||||||
def position(self) -> float:
|
def position(self) -> float:
|
||||||
"""当前柱塞位置 (ml) 📍"""
|
"""当前柱塞位置 (ml) 📍"""
|
||||||
return self._position
|
return self._position
|
||||||
|
|
||||||
@property
|
@property
|
||||||
def current_volume(self) -> float:
|
def current_volume(self) -> float:
|
||||||
"""当前注射器中的体积 (ml) 💧"""
|
"""当前注射器中的体积 (ml) 💧"""
|
||||||
return self._current_volume
|
return self._current_volume
|
||||||
|
|
||||||
@property
|
@property
|
||||||
def max_velocity(self) -> float:
|
def max_velocity(self) -> float:
|
||||||
return self._max_velocity
|
return self._max_velocity
|
||||||
|
|
||||||
@property
|
@property
|
||||||
def transfer_rate(self) -> float:
|
def transfer_rate(self) -> float:
|
||||||
return self._transfer_rate
|
return self._transfer_rate
|
||||||
@@ -103,17 +105,17 @@ class VirtualTransferPump:
|
|||||||
"""设置最大速度 (ml/s) 🌊"""
|
"""设置最大速度 (ml/s) 🌊"""
|
||||||
self._max_velocity = max(0.1, min(50.0, velocity)) # 限制在合理范围内
|
self._max_velocity = max(0.1, min(50.0, velocity)) # 限制在合理范围内
|
||||||
self.logger.info(f"🌊 设置最大速度为 {self._max_velocity} mL/s")
|
self.logger.info(f"🌊 设置最大速度为 {self._max_velocity} mL/s")
|
||||||
|
|
||||||
def get_status(self) -> str:
|
def get_status(self) -> str:
|
||||||
"""获取泵状态 📋"""
|
"""获取泵状态 📋"""
|
||||||
return self._status
|
return self._status
|
||||||
|
|
||||||
async def _simulate_operation(self, duration: float):
|
async def _simulate_operation(self, duration: float):
|
||||||
"""模拟操作延时 ⏱️"""
|
"""模拟操作延时 ⏱️"""
|
||||||
self._status = "Busy"
|
self._status = "Busy"
|
||||||
await self._ros_node.sleep(duration)
|
await self._ros_node.sleep(duration)
|
||||||
self._status = "Idle"
|
self._status = "Idle"
|
||||||
|
|
||||||
def _calculate_duration(self, volume: float, velocity: float = None) -> float:
|
def _calculate_duration(self, volume: float, velocity: float = None) -> float:
|
||||||
"""
|
"""
|
||||||
计算操作持续时间 ⏰
|
计算操作持续时间 ⏰
|
||||||
@@ -121,10 +123,10 @@ class VirtualTransferPump:
|
|||||||
"""
|
"""
|
||||||
if velocity is None:
|
if velocity is None:
|
||||||
velocity = self._max_velocity
|
velocity = self._max_velocity
|
||||||
|
|
||||||
# 📊 计算理论时间(用于日志显示)
|
# 📊 计算理论时间(用于日志显示)
|
||||||
theoretical_duration = abs(volume) / velocity
|
theoretical_duration = abs(volume) / velocity
|
||||||
|
|
||||||
# 🚀 如果启用快速模式,使用固定的快速时间
|
# 🚀 如果启用快速模式,使用固定的快速时间
|
||||||
if self._fast_mode:
|
if self._fast_mode:
|
||||||
# 根据操作类型选择快速时间
|
# 根据操作类型选择快速时间
|
||||||
@@ -132,13 +134,13 @@ class VirtualTransferPump:
|
|||||||
actual_duration = self._fast_move_time
|
actual_duration = self._fast_move_time
|
||||||
else: # 很小的操作
|
else: # 很小的操作
|
||||||
actual_duration = 0.5
|
actual_duration = 0.5
|
||||||
|
|
||||||
self.logger.debug(f"⚡ 快速模式: 理论时间 {theoretical_duration:.2f}s → 实际时间 {actual_duration:.2f}s")
|
self.logger.debug(f"⚡ 快速模式: 理论时间 {theoretical_duration:.2f}s → 实际时间 {actual_duration:.2f}s")
|
||||||
return actual_duration
|
return actual_duration
|
||||||
else:
|
else:
|
||||||
# 正常模式使用理论时间
|
# 正常模式使用理论时间
|
||||||
return theoretical_duration
|
return theoretical_duration
|
||||||
|
|
||||||
def _calculate_display_duration(self, volume: float, velocity: float = None) -> float:
|
def _calculate_display_duration(self, volume: float, velocity: float = None) -> float:
|
||||||
"""
|
"""
|
||||||
计算显示用的持续时间(用于日志) 📊
|
计算显示用的持续时间(用于日志) 📊
|
||||||
@@ -147,16 +149,16 @@ class VirtualTransferPump:
|
|||||||
if velocity is None:
|
if velocity is None:
|
||||||
velocity = self._max_velocity
|
velocity = self._max_velocity
|
||||||
return abs(volume) / velocity
|
return abs(volume) / velocity
|
||||||
|
|
||||||
# 新的set_position方法 - 专门用于SetPumpPosition动作
|
# 新的set_position方法 - 专门用于SetPumpPosition动作
|
||||||
async def set_position(self, position: float, max_velocity: float = None):
|
async def set_position(self, position: float, max_velocity: float = None):
|
||||||
"""
|
"""
|
||||||
移动到绝对位置 - 专门用于SetPumpPosition动作 🎯
|
移动到绝对位置 - 专门用于SetPumpPosition动作 🎯
|
||||||
|
|
||||||
Args:
|
Args:
|
||||||
position (float): 目标位置 (ml)
|
position (float): 目标位置 (ml)
|
||||||
max_velocity (float): 移动速度 (ml/s)
|
max_velocity (float): 移动速度 (ml/s)
|
||||||
|
|
||||||
Returns:
|
Returns:
|
||||||
dict: 符合SetPumpPosition.action定义的结果
|
dict: 符合SetPumpPosition.action定义的结果
|
||||||
"""
|
"""
|
||||||
@@ -164,19 +166,19 @@ class VirtualTransferPump:
|
|||||||
# 验证并转换参数
|
# 验证并转换参数
|
||||||
target_position = float(position)
|
target_position = float(position)
|
||||||
velocity = float(max_velocity) if max_velocity is not None else self._max_velocity
|
velocity = float(max_velocity) if max_velocity is not None else self._max_velocity
|
||||||
|
|
||||||
# 限制位置在有效范围内
|
# 限制位置在有效范围内
|
||||||
target_position = max(0.0, min(float(self.max_volume), target_position))
|
target_position = max(0.0, min(float(self.max_volume), target_position))
|
||||||
|
|
||||||
# 计算移动距离
|
# 计算移动距离
|
||||||
volume_to_move = abs(target_position - self._position)
|
volume_to_move = abs(target_position - self._position)
|
||||||
|
|
||||||
# 📊 计算显示用的时间(用于日志)
|
# 📊 计算显示用的时间(用于日志)
|
||||||
display_duration = self._calculate_display_duration(volume_to_move, velocity)
|
display_duration = self._calculate_display_duration(volume_to_move, velocity)
|
||||||
|
|
||||||
# ⚡ 计算实际执行时间(快速模式)
|
# ⚡ 计算实际执行时间(快速模式)
|
||||||
actual_duration = self._calculate_duration(volume_to_move, velocity)
|
actual_duration = self._calculate_duration(volume_to_move, velocity)
|
||||||
|
|
||||||
# 🎯 确定操作类型和emoji
|
# 🎯 确定操作类型和emoji
|
||||||
if target_position > self._position:
|
if target_position > self._position:
|
||||||
operation_type = "吸液"
|
operation_type = "吸液"
|
||||||
@@ -187,28 +189,34 @@ class VirtualTransferPump:
|
|||||||
else:
|
else:
|
||||||
operation_type = "保持"
|
operation_type = "保持"
|
||||||
operation_emoji = "📍"
|
operation_emoji = "📍"
|
||||||
|
|
||||||
self.logger.info(f"🎯 SET_POSITION: {operation_type} {operation_emoji}")
|
self.logger.info(f"🎯 SET_POSITION: {operation_type} {operation_emoji}")
|
||||||
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {target_position:.2f}mL (移动 {volume_to_move:.2f}mL)")
|
self.logger.info(
|
||||||
|
f" 📍 位置: {self._position:.2f}mL → {target_position:.2f}mL (移动 {volume_to_move:.2f}mL)"
|
||||||
|
)
|
||||||
self.logger.info(f" 🌊 速度: {velocity:.2f} mL/s")
|
self.logger.info(f" 🌊 速度: {velocity:.2f} mL/s")
|
||||||
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
|
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
|
||||||
|
|
||||||
if self._fast_mode:
|
if self._fast_mode:
|
||||||
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
|
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
|
||||||
|
|
||||||
# 🚀 模拟移动过程
|
# 🚀 模拟移动过程
|
||||||
if volume_to_move > 0.01: # 只有当移动距离足够大时才显示进度
|
if volume_to_move > 0.01: # 只有当移动距离足够大时才显示进度
|
||||||
start_position = self._position
|
start_position = self._position
|
||||||
steps = 5 if actual_duration > 0.5 else 2 # 根据实际时间调整步数
|
steps = 5 if actual_duration > 0.5 else 2 # 根据实际时间调整步数
|
||||||
step_duration = actual_duration / steps
|
step_duration = actual_duration / steps
|
||||||
|
|
||||||
self.logger.info(f"🚀 开始{operation_type}... {operation_emoji}")
|
self.logger.info(f"🚀 开始{operation_type}... {operation_emoji}")
|
||||||
|
|
||||||
for i in range(steps + 1):
|
for i in range(steps + 1):
|
||||||
# 计算当前位置和进度
|
# 计算当前位置和进度
|
||||||
progress = (i / steps) * 100 if steps > 0 else 100
|
progress = (i / steps) * 100 if steps > 0 else 100
|
||||||
current_pos = start_position + (target_position - start_position) * (i / steps) if steps > 0 else target_position
|
current_pos = (
|
||||||
|
start_position + (target_position - start_position) * (i / steps)
|
||||||
|
if steps > 0
|
||||||
|
else target_position
|
||||||
|
)
|
||||||
|
|
||||||
# 更新状态
|
# 更新状态
|
||||||
if i < steps:
|
if i < steps:
|
||||||
self._status = f"{operation_type}中"
|
self._status = f"{operation_type}中"
|
||||||
@@ -216,10 +224,10 @@ class VirtualTransferPump:
|
|||||||
else:
|
else:
|
||||||
self._status = "Idle"
|
self._status = "Idle"
|
||||||
status_emoji = "✅"
|
status_emoji = "✅"
|
||||||
|
|
||||||
self._position = current_pos
|
self._position = current_pos
|
||||||
self._current_volume = current_pos
|
self._current_volume = current_pos
|
||||||
|
|
||||||
# 显示进度(每25%或最后一步)
|
# 显示进度(每25%或最后一步)
|
||||||
if i == 0:
|
if i == 0:
|
||||||
self.logger.debug(f" 🔄 {operation_type}开始: {progress:.0f}%")
|
self.logger.debug(f" 🔄 {operation_type}开始: {progress:.0f}%")
|
||||||
@@ -227,7 +235,7 @@ class VirtualTransferPump:
|
|||||||
self.logger.debug(f" 🔄 {operation_type}进度: {progress:.0f}%")
|
self.logger.debug(f" 🔄 {operation_type}进度: {progress:.0f}%")
|
||||||
elif i == steps:
|
elif i == steps:
|
||||||
self.logger.info(f" ✅ {operation_type}完成: {progress:.0f}% | 当前位置: {current_pos:.2f}mL")
|
self.logger.info(f" ✅ {operation_type}完成: {progress:.0f}% | 当前位置: {current_pos:.2f}mL")
|
||||||
|
|
||||||
# 等待一小步时间
|
# 等待一小步时间
|
||||||
if i < steps and step_duration > 0:
|
if i < steps and step_duration > 0:
|
||||||
await self._ros_node.sleep(step_duration)
|
await self._ros_node.sleep(step_duration)
|
||||||
@@ -236,25 +244,27 @@ class VirtualTransferPump:
|
|||||||
self._position = target_position
|
self._position = target_position
|
||||||
self._current_volume = target_position
|
self._current_volume = target_position
|
||||||
self.logger.info(f" 📍 微调完成: {target_position:.2f}mL")
|
self.logger.info(f" 📍 微调完成: {target_position:.2f}mL")
|
||||||
|
|
||||||
# 确保最终位置准确
|
# 确保最终位置准确
|
||||||
self._position = target_position
|
self._position = target_position
|
||||||
self._current_volume = target_position
|
self._current_volume = target_position
|
||||||
self._status = "Idle"
|
self._status = "Idle"
|
||||||
|
|
||||||
# 📊 最终状态日志
|
# 📊 最终状态日志
|
||||||
if volume_to_move > 0.01:
|
if volume_to_move > 0.01:
|
||||||
self.logger.info(f"🎉 SET_POSITION 完成! 📍 最终位置: {self._position:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
|
self.logger.info(
|
||||||
|
f"🎉 SET_POSITION 完成! 📍 最终位置: {self._position:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL"
|
||||||
|
)
|
||||||
|
|
||||||
# 返回符合action定义的结果
|
# 返回符合action定义的结果
|
||||||
return {
|
return {
|
||||||
"success": True,
|
"success": True,
|
||||||
"message": f"✅ 成功移动到位置 {self._position:.2f}mL ({operation_type})",
|
"message": f"✅ 成功移动到位置 {self._position:.2f}mL ({operation_type})",
|
||||||
"final_position": self._position,
|
"final_position": self._position,
|
||||||
"final_volume": self._current_volume,
|
"final_volume": self._current_volume,
|
||||||
"operation_type": operation_type
|
"operation_type": operation_type,
|
||||||
}
|
}
|
||||||
|
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
error_msg = f"❌ 设置位置失败: {str(e)}"
|
error_msg = f"❌ 设置位置失败: {str(e)}"
|
||||||
self.logger.error(error_msg)
|
self.logger.error(error_msg)
|
||||||
@@ -262,134 +272,136 @@ class VirtualTransferPump:
|
|||||||
"success": False,
|
"success": False,
|
||||||
"message": error_msg,
|
"message": error_msg,
|
||||||
"final_position": self._position,
|
"final_position": self._position,
|
||||||
"final_volume": self._current_volume
|
"final_volume": self._current_volume,
|
||||||
}
|
}
|
||||||
|
|
||||||
# 其他泵操作方法
|
# 其他泵操作方法
|
||||||
async def pull_plunger(self, volume: float, velocity: float = None):
|
async def pull_plunger(self, volume: float, velocity: float = None):
|
||||||
"""
|
"""
|
||||||
拉取柱塞(吸液) 📥
|
拉取柱塞(吸液) 📥
|
||||||
|
|
||||||
Args:
|
Args:
|
||||||
volume (float): 要拉取的体积 (ml)
|
volume (float): 要拉取的体积 (ml)
|
||||||
velocity (float): 拉取速度 (ml/s)
|
velocity (float): 拉取速度 (ml/s)
|
||||||
"""
|
"""
|
||||||
new_position = min(self.max_volume, self._position + volume)
|
new_position = min(self.max_volume, self._position + volume)
|
||||||
actual_volume = new_position - self._position
|
actual_volume = new_position - self._position
|
||||||
|
|
||||||
if actual_volume <= 0:
|
if actual_volume <= 0:
|
||||||
self.logger.warning("⚠️ 无法吸液 - 已达到最大容量")
|
self.logger.warning("⚠️ 无法吸液 - 已达到最大容量")
|
||||||
return
|
return
|
||||||
|
|
||||||
display_duration = self._calculate_display_duration(actual_volume, velocity)
|
display_duration = self._calculate_display_duration(actual_volume, velocity)
|
||||||
actual_duration = self._calculate_duration(actual_volume, velocity)
|
actual_duration = self._calculate_duration(actual_volume, velocity)
|
||||||
|
|
||||||
self.logger.info(f"📥 开始吸液: {actual_volume:.2f}mL")
|
self.logger.info(f"📥 开始吸液: {actual_volume:.2f}mL")
|
||||||
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {new_position:.2f}mL")
|
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {new_position:.2f}mL")
|
||||||
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
|
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
|
||||||
|
|
||||||
if self._fast_mode:
|
if self._fast_mode:
|
||||||
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
|
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
|
||||||
|
|
||||||
await self._simulate_operation(actual_duration)
|
await self._simulate_operation(actual_duration)
|
||||||
|
|
||||||
self._position = new_position
|
self._position = new_position
|
||||||
self._current_volume = new_position
|
self._current_volume = new_position
|
||||||
|
|
||||||
self.logger.info(f"✅ 吸液完成: {actual_volume:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
|
self.logger.info(f"✅ 吸液完成: {actual_volume:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
|
||||||
|
|
||||||
async def push_plunger(self, volume: float, velocity: float = None):
|
async def push_plunger(self, volume: float, velocity: float = None):
|
||||||
"""
|
"""
|
||||||
推出柱塞(排液) 📤
|
推出柱塞(排液) 📤
|
||||||
|
|
||||||
Args:
|
Args:
|
||||||
volume (float): 要推出的体积 (ml)
|
volume (float): 要推出的体积 (ml)
|
||||||
velocity (float): 推出速度 (ml/s)
|
velocity (float): 推出速度 (ml/s)
|
||||||
"""
|
"""
|
||||||
new_position = max(0, self._position - volume)
|
new_position = max(0, self._position - volume)
|
||||||
actual_volume = self._position - new_position
|
actual_volume = self._position - new_position
|
||||||
|
|
||||||
if actual_volume <= 0:
|
if actual_volume <= 0:
|
||||||
self.logger.warning("⚠️ 无法排液 - 已达到最小容量")
|
self.logger.warning("⚠️ 无法排液 - 已达到最小容量")
|
||||||
return
|
return
|
||||||
|
|
||||||
display_duration = self._calculate_display_duration(actual_volume, velocity)
|
display_duration = self._calculate_display_duration(actual_volume, velocity)
|
||||||
actual_duration = self._calculate_duration(actual_volume, velocity)
|
actual_duration = self._calculate_duration(actual_volume, velocity)
|
||||||
|
|
||||||
self.logger.info(f"📤 开始排液: {actual_volume:.2f}mL")
|
self.logger.info(f"📤 开始排液: {actual_volume:.2f}mL")
|
||||||
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {new_position:.2f}mL")
|
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {new_position:.2f}mL")
|
||||||
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
|
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
|
||||||
|
|
||||||
if self._fast_mode:
|
if self._fast_mode:
|
||||||
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
|
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
|
||||||
|
|
||||||
await self._simulate_operation(actual_duration)
|
await self._simulate_operation(actual_duration)
|
||||||
|
|
||||||
self._position = new_position
|
self._position = new_position
|
||||||
self._current_volume = new_position
|
self._current_volume = new_position
|
||||||
|
|
||||||
self.logger.info(f"✅ 排液完成: {actual_volume:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
|
self.logger.info(f"✅ 排液完成: {actual_volume:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
|
||||||
|
|
||||||
# 便捷操作方法
|
# 便捷操作方法
|
||||||
async def aspirate(self, volume: float, velocity: float = None):
|
async def aspirate(self, volume: float, velocity: float = None):
|
||||||
"""吸液操作 📥"""
|
"""吸液操作 📥"""
|
||||||
await self.pull_plunger(volume, velocity)
|
await self.pull_plunger(volume, velocity)
|
||||||
|
|
||||||
async def dispense(self, volume: float, velocity: float = None):
|
async def dispense(self, volume: float, velocity: float = None):
|
||||||
"""排液操作 📤"""
|
"""排液操作 📤"""
|
||||||
await self.push_plunger(volume, velocity)
|
await self.push_plunger(volume, velocity)
|
||||||
|
|
||||||
async def transfer(self, volume: float, aspirate_velocity: float = None, dispense_velocity: float = None):
|
async def transfer(self, volume: float, aspirate_velocity: float = None, dispense_velocity: float = None):
|
||||||
"""转移操作(先吸后排) 🔄"""
|
"""转移操作(先吸后排) 🔄"""
|
||||||
self.logger.info(f"🔄 开始转移操作: {volume:.2f}mL")
|
self.logger.info(f"🔄 开始转移操作: {volume:.2f}mL")
|
||||||
|
|
||||||
# 吸液
|
# 吸液
|
||||||
await self.aspirate(volume, aspirate_velocity)
|
await self.aspirate(volume, aspirate_velocity)
|
||||||
|
|
||||||
# 短暂停顿
|
# 短暂停顿
|
||||||
self.logger.debug("⏸️ 短暂停顿...")
|
self.logger.debug("⏸️ 短暂停顿...")
|
||||||
await self._ros_node.sleep(0.1)
|
await self._ros_node.sleep(0.1)
|
||||||
|
|
||||||
# 排液
|
# 排液
|
||||||
await self.dispense(volume, dispense_velocity)
|
await self.dispense(volume, dispense_velocity)
|
||||||
|
|
||||||
async def empty_syringe(self, velocity: float = None):
|
async def empty_syringe(self, velocity: float = None):
|
||||||
"""清空注射器"""
|
"""清空注射器"""
|
||||||
await self.set_position(0, velocity)
|
await self.set_position(0, velocity)
|
||||||
|
|
||||||
async def fill_syringe(self, velocity: float = None):
|
async def fill_syringe(self, velocity: float = None):
|
||||||
"""充满注射器"""
|
"""充满注射器"""
|
||||||
await self.set_position(self.max_volume, velocity)
|
await self.set_position(self.max_volume, velocity)
|
||||||
|
|
||||||
async def stop_operation(self):
|
async def stop_operation(self):
|
||||||
"""停止当前操作"""
|
"""停止当前操作"""
|
||||||
self._status = "Idle"
|
self._status = "Idle"
|
||||||
self.logger.info("Operation stopped")
|
self.logger.info("Operation stopped")
|
||||||
|
|
||||||
# 状态查询方法
|
# 状态查询方法
|
||||||
def get_position(self) -> float:
|
def get_position(self) -> float:
|
||||||
"""获取当前位置"""
|
"""获取当前位置"""
|
||||||
return self._position
|
return self._position
|
||||||
|
|
||||||
def get_current_volume(self) -> float:
|
def get_current_volume(self) -> float:
|
||||||
"""获取当前体积"""
|
"""获取当前体积"""
|
||||||
return self._current_volume
|
return self._current_volume
|
||||||
|
|
||||||
def get_remaining_capacity(self) -> float:
|
def get_remaining_capacity(self) -> float:
|
||||||
"""获取剩余容量"""
|
"""获取剩余容量"""
|
||||||
return self.max_volume - self._current_volume
|
return self.max_volume - self._current_volume
|
||||||
|
|
||||||
def is_empty(self) -> bool:
|
def is_empty(self) -> bool:
|
||||||
"""检查是否为空"""
|
"""检查是否为空"""
|
||||||
return self._current_volume <= 0.01 # 允许小量误差
|
return self._current_volume <= 0.01 # 允许小量误差
|
||||||
|
|
||||||
def is_full(self) -> bool:
|
def is_full(self) -> bool:
|
||||||
"""检查是否已满"""
|
"""检查是否已满"""
|
||||||
return self._current_volume >= (self.max_volume - 0.01) # 允许小量误差
|
return self._current_volume >= (self.max_volume - 0.01) # 允许小量误差
|
||||||
|
|
||||||
def __str__(self):
|
def __str__(self):
|
||||||
return f"VirtualTransferPump({self.device_id}: {self._current_volume:.2f}/{self.max_volume} ml, {self._status})"
|
return (
|
||||||
|
f"VirtualTransferPump({self.device_id}: {self._current_volume:.2f}/{self.max_volume} ml, {self._status})"
|
||||||
|
)
|
||||||
|
|
||||||
def __repr__(self):
|
def __repr__(self):
|
||||||
return self.__str__()
|
return self.__str__()
|
||||||
|
|
||||||
@@ -398,20 +410,20 @@ class VirtualTransferPump:
|
|||||||
async def demo():
|
async def demo():
|
||||||
"""虚拟泵使用示例"""
|
"""虚拟泵使用示例"""
|
||||||
pump = VirtualTransferPump("demo_pump", {"max_volume": 50.0})
|
pump = VirtualTransferPump("demo_pump", {"max_volume": 50.0})
|
||||||
|
|
||||||
await pump.initialize()
|
await pump.initialize()
|
||||||
|
|
||||||
print(f"Initial state: {pump}")
|
print(f"Initial state: {pump}")
|
||||||
|
|
||||||
# 测试set_position方法
|
# 测试set_position方法
|
||||||
result = await pump.set_position(10.0, max_velocity=2.0)
|
result = await pump.set_position(10.0, max_velocity=2.0)
|
||||||
print(f"Set position result: {result}")
|
print(f"Set position result: {result}")
|
||||||
print(f"After setting position to 10ml: {pump}")
|
print(f"After setting position to 10ml: {pump}")
|
||||||
|
|
||||||
# 吸液测试
|
# 吸液测试
|
||||||
await pump.aspirate(5.0, velocity=2.0)
|
await pump.aspirate(5.0, velocity=2.0)
|
||||||
print(f"After aspirating 5ml: {pump}")
|
print(f"After aspirating 5ml: {pump}")
|
||||||
|
|
||||||
# 清空测试
|
# 清空测试
|
||||||
result = await pump.set_position(0.0)
|
result = await pump.set_position(0.0)
|
||||||
print(f"Empty result: {result}")
|
print(f"Empty result: {result}")
|
||||||
|
|||||||
@@ -11,9 +11,10 @@ Virtual Workbench Device - 模拟工作台设备
|
|||||||
|
|
||||||
注意:调用来自线程池,使用 threading.Lock 进行同步
|
注意:调用来自线程池,使用 threading.Lock 进行同步
|
||||||
"""
|
"""
|
||||||
|
|
||||||
import logging
|
import logging
|
||||||
import time
|
import time
|
||||||
from typing import Dict, Any, Optional
|
from typing import Dict, Any, Optional, List
|
||||||
from dataclasses import dataclass
|
from dataclasses import dataclass
|
||||||
from enum import Enum
|
from enum import Enum
|
||||||
from threading import Lock, RLock
|
from threading import Lock, RLock
|
||||||
@@ -21,38 +22,47 @@ from threading import Lock, RLock
|
|||||||
from typing_extensions import TypedDict
|
from typing_extensions import TypedDict
|
||||||
|
|
||||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
|
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
|
||||||
from unilabos.utils.decorator import not_action
|
from unilabos.utils.decorator import not_action, always_free
|
||||||
|
from unilabos.resources.resource_tracker import SampleUUIDsType, LabSample, RETURN_UNILABOS_SAMPLES
|
||||||
|
|
||||||
|
|
||||||
# ============ TypedDict 返回类型定义 ============
|
# ============ TypedDict 返回类型定义 ============
|
||||||
|
|
||||||
|
|
||||||
class MoveToHeatingStationResult(TypedDict):
|
class MoveToHeatingStationResult(TypedDict):
|
||||||
"""move_to_heating_station 返回类型"""
|
"""move_to_heating_station 返回类型"""
|
||||||
|
|
||||||
success: bool
|
success: bool
|
||||||
station_id: int
|
station_id: int
|
||||||
material_id: str
|
material_id: str
|
||||||
material_number: int
|
material_number: int
|
||||||
message: str
|
message: str
|
||||||
|
unilabos_samples: List[LabSample]
|
||||||
|
|
||||||
|
|
||||||
class StartHeatingResult(TypedDict):
|
class StartHeatingResult(TypedDict):
|
||||||
"""start_heating 返回类型"""
|
"""start_heating 返回类型"""
|
||||||
|
|
||||||
success: bool
|
success: bool
|
||||||
station_id: int
|
station_id: int
|
||||||
material_id: str
|
material_id: str
|
||||||
material_number: int
|
material_number: int
|
||||||
message: str
|
message: str
|
||||||
|
unilabos_samples: List[LabSample]
|
||||||
|
|
||||||
|
|
||||||
class MoveToOutputResult(TypedDict):
|
class MoveToOutputResult(TypedDict):
|
||||||
"""move_to_output 返回类型"""
|
"""move_to_output 返回类型"""
|
||||||
|
|
||||||
success: bool
|
success: bool
|
||||||
station_id: int
|
station_id: int
|
||||||
material_id: str
|
material_id: str
|
||||||
|
unilabos_samples: List[LabSample]
|
||||||
|
|
||||||
|
|
||||||
class PrepareMaterialsResult(TypedDict):
|
class PrepareMaterialsResult(TypedDict):
|
||||||
"""prepare_materials 返回类型 - 批量准备物料"""
|
"""prepare_materials 返回类型 - 批量准备物料"""
|
||||||
|
|
||||||
success: bool
|
success: bool
|
||||||
count: int
|
count: int
|
||||||
material_1: int # 物料编号1
|
material_1: int # 物料编号1
|
||||||
@@ -61,12 +71,15 @@ class PrepareMaterialsResult(TypedDict):
|
|||||||
material_4: int # 物料编号4
|
material_4: int # 物料编号4
|
||||||
material_5: int # 物料编号5
|
material_5: int # 物料编号5
|
||||||
message: str
|
message: str
|
||||||
|
unilabos_samples: List[LabSample]
|
||||||
|
|
||||||
|
|
||||||
# ============ 状态枚举 ============
|
# ============ 状态枚举 ============
|
||||||
|
|
||||||
|
|
||||||
class HeatingStationState(Enum):
|
class HeatingStationState(Enum):
|
||||||
"""加热台状态枚举"""
|
"""加热台状态枚举"""
|
||||||
|
|
||||||
IDLE = "idle" # 空闲
|
IDLE = "idle" # 空闲
|
||||||
OCCUPIED = "occupied" # 已放置物料,等待加热
|
OCCUPIED = "occupied" # 已放置物料,等待加热
|
||||||
HEATING = "heating" # 加热中
|
HEATING = "heating" # 加热中
|
||||||
@@ -75,6 +88,7 @@ class HeatingStationState(Enum):
|
|||||||
|
|
||||||
class ArmState(Enum):
|
class ArmState(Enum):
|
||||||
"""机械臂状态枚举"""
|
"""机械臂状态枚举"""
|
||||||
|
|
||||||
IDLE = "idle" # 空闲
|
IDLE = "idle" # 空闲
|
||||||
BUSY = "busy" # 工作中
|
BUSY = "busy" # 工作中
|
||||||
|
|
||||||
@@ -82,6 +96,7 @@ class ArmState(Enum):
|
|||||||
@dataclass
|
@dataclass
|
||||||
class HeatingStation:
|
class HeatingStation:
|
||||||
"""加热台数据结构"""
|
"""加热台数据结构"""
|
||||||
|
|
||||||
station_id: int
|
station_id: int
|
||||||
state: HeatingStationState = HeatingStationState.IDLE
|
state: HeatingStationState = HeatingStationState.IDLE
|
||||||
current_material: Optional[str] = None # 当前物料 (如 "A1", "A2")
|
current_material: Optional[str] = None # 当前物料 (如 "A1", "A2")
|
||||||
@@ -108,8 +123,8 @@ class VirtualWorkbench:
|
|||||||
_ros_node: BaseROS2DeviceNode
|
_ros_node: BaseROS2DeviceNode
|
||||||
|
|
||||||
# 配置常量
|
# 配置常量
|
||||||
ARM_OPERATION_TIME: float = 3.0 # 机械臂操作时间(秒)
|
ARM_OPERATION_TIME: float = 2 # 机械臂操作时间(秒)
|
||||||
HEATING_TIME: float = 10.0 # 加热时间(秒)
|
HEATING_TIME: float = 60.0 # 加热时间(秒)
|
||||||
NUM_HEATING_STATIONS: int = 3 # 加热台数量
|
NUM_HEATING_STATIONS: int = 3 # 加热台数量
|
||||||
|
|
||||||
def __init__(self, device_id: Optional[str] = None, config: Optional[Dict[str, Any]] = None, **kwargs):
|
def __init__(self, device_id: Optional[str] = None, config: Optional[Dict[str, Any]] = None, **kwargs):
|
||||||
@@ -126,9 +141,9 @@ class VirtualWorkbench:
|
|||||||
self.data: Dict[str, Any] = {}
|
self.data: Dict[str, Any] = {}
|
||||||
|
|
||||||
# 从config中获取可配置参数
|
# 从config中获取可配置参数
|
||||||
self.ARM_OPERATION_TIME = float(self.config.get("arm_operation_time", 3.0))
|
self.ARM_OPERATION_TIME = float(self.config.get("arm_operation_time", self.ARM_OPERATION_TIME))
|
||||||
self.HEATING_TIME = float(self.config.get("heating_time", 10.0))
|
self.HEATING_TIME = float(self.config.get("heating_time", self.HEATING_TIME))
|
||||||
self.NUM_HEATING_STATIONS = int(self.config.get("num_heating_stations", 3))
|
self.NUM_HEATING_STATIONS = int(self.config.get("num_heating_stations", self.NUM_HEATING_STATIONS))
|
||||||
|
|
||||||
# 机械臂状态和锁 (使用threading.Lock)
|
# 机械臂状态和锁 (使用threading.Lock)
|
||||||
self._arm_lock = Lock()
|
self._arm_lock = Lock()
|
||||||
@@ -137,8 +152,7 @@ class VirtualWorkbench:
|
|||||||
|
|
||||||
# 加热台状态 (station_id -> HeatingStation) - 立即初始化,不依赖initialize()
|
# 加热台状态 (station_id -> HeatingStation) - 立即初始化,不依赖initialize()
|
||||||
self._heating_stations: Dict[int, HeatingStation] = {
|
self._heating_stations: Dict[int, HeatingStation] = {
|
||||||
i: HeatingStation(station_id=i)
|
i: HeatingStation(station_id=i) for i in range(1, self.NUM_HEATING_STATIONS + 1)
|
||||||
for i in range(1, self.NUM_HEATING_STATIONS + 1)
|
|
||||||
}
|
}
|
||||||
self._stations_lock = RLock() # 可重入锁,保护加热台状态
|
self._stations_lock = RLock() # 可重入锁,保护加热台状态
|
||||||
|
|
||||||
@@ -178,14 +192,16 @@ class VirtualWorkbench:
|
|||||||
station.heating_progress = 0.0
|
station.heating_progress = 0.0
|
||||||
|
|
||||||
# 初始化状态
|
# 初始化状态
|
||||||
self.data.update({
|
self.data.update(
|
||||||
"status": "Ready",
|
{
|
||||||
"arm_state": ArmState.IDLE.value,
|
"status": "Ready",
|
||||||
"arm_current_task": None,
|
"arm_state": ArmState.IDLE.value,
|
||||||
"heating_stations": self._get_stations_status(),
|
"arm_current_task": None,
|
||||||
"active_tasks_count": 0,
|
"heating_stations": self._get_stations_status(),
|
||||||
"message": "工作台就绪",
|
"active_tasks_count": 0,
|
||||||
})
|
"message": "工作台就绪",
|
||||||
|
}
|
||||||
|
)
|
||||||
|
|
||||||
self.logger.info(f"工作台初始化完成: {self.NUM_HEATING_STATIONS}个加热台就绪")
|
self.logger.info(f"工作台初始化完成: {self.NUM_HEATING_STATIONS}个加热台就绪")
|
||||||
return True
|
return True
|
||||||
@@ -204,12 +220,14 @@ class VirtualWorkbench:
|
|||||||
with self._tasks_lock:
|
with self._tasks_lock:
|
||||||
self._active_tasks.clear()
|
self._active_tasks.clear()
|
||||||
|
|
||||||
self.data.update({
|
self.data.update(
|
||||||
"status": "Offline",
|
{
|
||||||
"arm_state": ArmState.IDLE.value,
|
"status": "Offline",
|
||||||
"heating_stations": {},
|
"arm_state": ArmState.IDLE.value,
|
||||||
"message": "工作台已关闭",
|
"heating_stations": {},
|
||||||
})
|
"message": "工作台已关闭",
|
||||||
|
}
|
||||||
|
)
|
||||||
return True
|
return True
|
||||||
|
|
||||||
def _get_stations_status(self) -> Dict[int, Dict[str, Any]]:
|
def _get_stations_status(self) -> Dict[int, Dict[str, Any]]:
|
||||||
@@ -227,12 +245,14 @@ class VirtualWorkbench:
|
|||||||
|
|
||||||
def _update_data_status(self, message: Optional[str] = None):
|
def _update_data_status(self, message: Optional[str] = None):
|
||||||
"""更新状态数据"""
|
"""更新状态数据"""
|
||||||
self.data.update({
|
self.data.update(
|
||||||
"arm_state": self._arm_state.value,
|
{
|
||||||
"arm_current_task": self._arm_current_task,
|
"arm_state": self._arm_state.value,
|
||||||
"heating_stations": self._get_stations_status(),
|
"arm_current_task": self._arm_current_task,
|
||||||
"active_tasks_count": len(self._active_tasks),
|
"heating_stations": self._get_stations_status(),
|
||||||
})
|
"active_tasks_count": len(self._active_tasks),
|
||||||
|
}
|
||||||
|
)
|
||||||
if message:
|
if message:
|
||||||
self.data["message"] = message
|
self.data["message"] = message
|
||||||
|
|
||||||
@@ -280,6 +300,7 @@ class VirtualWorkbench:
|
|||||||
|
|
||||||
def prepare_materials(
|
def prepare_materials(
|
||||||
self,
|
self,
|
||||||
|
sample_uuids: SampleUUIDsType,
|
||||||
count: int = 5,
|
count: int = 5,
|
||||||
) -> PrepareMaterialsResult:
|
) -> PrepareMaterialsResult:
|
||||||
"""
|
"""
|
||||||
@@ -297,10 +318,7 @@ class VirtualWorkbench:
|
|||||||
# 生成物料列表 A1 - A{count}
|
# 生成物料列表 A1 - A{count}
|
||||||
materials = [i for i in range(1, count + 1)]
|
materials = [i for i in range(1, count + 1)]
|
||||||
|
|
||||||
self.logger.info(
|
self.logger.info(f"[准备物料] 生成 {count} 个物料: " f"A1-A{count} -> material_1~material_{count}")
|
||||||
f"[准备物料] 生成 {count} 个物料: "
|
|
||||||
f"A1-A{count} -> material_1~material_{count}"
|
|
||||||
)
|
|
||||||
|
|
||||||
return {
|
return {
|
||||||
"success": True,
|
"success": True,
|
||||||
@@ -311,10 +329,12 @@ class VirtualWorkbench:
|
|||||||
"material_4": materials[3] if len(materials) > 3 else 0,
|
"material_4": materials[3] if len(materials) > 3 else 0,
|
||||||
"material_5": materials[4] if len(materials) > 4 else 0,
|
"material_5": materials[4] if len(materials) > 4 else 0,
|
||||||
"message": f"已准备 {count} 个物料: A1-A{count}",
|
"message": f"已准备 {count} 个物料: A1-A{count}",
|
||||||
|
"unilabos_samples": [LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
def move_to_heating_station(
|
def move_to_heating_station(
|
||||||
self,
|
self,
|
||||||
|
sample_uuids: SampleUUIDsType,
|
||||||
material_number: int,
|
material_number: int,
|
||||||
) -> MoveToHeatingStationResult:
|
) -> MoveToHeatingStationResult:
|
||||||
"""
|
"""
|
||||||
@@ -391,6 +411,9 @@ class VirtualWorkbench:
|
|||||||
"material_id": material_id,
|
"material_id": material_id,
|
||||||
"material_number": material_number,
|
"material_number": material_number,
|
||||||
"message": f"{material_id}已成功移动到加热台{station_id}",
|
"message": f"{material_id}已成功移动到加热台{station_id}",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
@@ -403,10 +426,15 @@ class VirtualWorkbench:
|
|||||||
"material_id": material_id,
|
"material_id": material_id,
|
||||||
"material_number": material_number,
|
"material_number": material_number,
|
||||||
"message": f"移动失败: {str(e)}",
|
"message": f"移动失败: {str(e)}",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@always_free
|
||||||
def start_heating(
|
def start_heating(
|
||||||
self,
|
self,
|
||||||
|
sample_uuids: SampleUUIDsType,
|
||||||
station_id: int,
|
station_id: int,
|
||||||
material_number: int,
|
material_number: int,
|
||||||
) -> StartHeatingResult:
|
) -> StartHeatingResult:
|
||||||
@@ -429,6 +457,9 @@ class VirtualWorkbench:
|
|||||||
"material_id": "",
|
"material_id": "",
|
||||||
"material_number": material_number,
|
"material_number": material_number,
|
||||||
"message": f"无效的加热台ID: {station_id}",
|
"message": f"无效的加热台ID: {station_id}",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
with self._stations_lock:
|
with self._stations_lock:
|
||||||
@@ -441,6 +472,9 @@ class VirtualWorkbench:
|
|||||||
"material_id": "",
|
"material_id": "",
|
||||||
"material_number": material_number,
|
"material_number": material_number,
|
||||||
"message": f"加热台{station_id}上没有物料",
|
"message": f"加热台{station_id}上没有物料",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
if station.state == HeatingStationState.HEATING:
|
if station.state == HeatingStationState.HEATING:
|
||||||
@@ -450,6 +484,9 @@ class VirtualWorkbench:
|
|||||||
"material_id": station.current_material,
|
"material_id": station.current_material,
|
||||||
"material_number": material_number,
|
"material_number": material_number,
|
||||||
"message": f"加热台{station_id}已经在加热中",
|
"message": f"加热台{station_id}已经在加热中",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
material_id = station.current_material
|
material_id = station.current_material
|
||||||
@@ -465,10 +502,21 @@ class VirtualWorkbench:
|
|||||||
|
|
||||||
self._update_data_status(f"加热台{station_id}开始加热{material_id}")
|
self._update_data_status(f"加热台{station_id}开始加热{material_id}")
|
||||||
|
|
||||||
# 模拟加热过程 (10秒)
|
# 打印当前所有正在加热的台位
|
||||||
|
with self._stations_lock:
|
||||||
|
heating_list = [
|
||||||
|
f"加热台{sid}:{s.current_material}"
|
||||||
|
for sid, s in self._heating_stations.items()
|
||||||
|
if s.state == HeatingStationState.HEATING and s.current_material
|
||||||
|
]
|
||||||
|
self.logger.info(f"[并行加热] 当前同时加热中: {', '.join(heating_list)}")
|
||||||
|
|
||||||
|
# 模拟加热过程
|
||||||
start_time = time.time()
|
start_time = time.time()
|
||||||
|
last_countdown_log = start_time
|
||||||
while True:
|
while True:
|
||||||
elapsed = time.time() - start_time
|
elapsed = time.time() - start_time
|
||||||
|
remaining = max(0.0, self.HEATING_TIME - elapsed)
|
||||||
progress = min(100.0, (elapsed / self.HEATING_TIME) * 100)
|
progress = min(100.0, (elapsed / self.HEATING_TIME) * 100)
|
||||||
|
|
||||||
with self._stations_lock:
|
with self._stations_lock:
|
||||||
@@ -476,6 +524,11 @@ class VirtualWorkbench:
|
|||||||
|
|
||||||
self._update_data_status(f"加热台{station_id}加热中: {progress:.1f}%")
|
self._update_data_status(f"加热台{station_id}加热中: {progress:.1f}%")
|
||||||
|
|
||||||
|
# 每5秒打印一次倒计时
|
||||||
|
if time.time() - last_countdown_log >= 5.0:
|
||||||
|
self.logger.info(f"[加热台{station_id}] {material_id} 剩余 {remaining:.1f}s")
|
||||||
|
last_countdown_log = time.time()
|
||||||
|
|
||||||
if elapsed >= self.HEATING_TIME:
|
if elapsed >= self.HEATING_TIME:
|
||||||
break
|
break
|
||||||
|
|
||||||
@@ -499,10 +552,14 @@ class VirtualWorkbench:
|
|||||||
"material_id": material_id,
|
"material_id": material_id,
|
||||||
"material_number": material_number,
|
"material_number": material_number,
|
||||||
"message": f"加热台{station_id}加热完成",
|
"message": f"加热台{station_id}加热完成",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
def move_to_output(
|
def move_to_output(
|
||||||
self,
|
self,
|
||||||
|
sample_uuids: SampleUUIDsType,
|
||||||
station_id: int,
|
station_id: int,
|
||||||
material_number: int,
|
material_number: int,
|
||||||
) -> MoveToOutputResult:
|
) -> MoveToOutputResult:
|
||||||
@@ -525,6 +582,9 @@ class VirtualWorkbench:
|
|||||||
"material_id": "",
|
"material_id": "",
|
||||||
"output_position": f"C{output_number}",
|
"output_position": f"C{output_number}",
|
||||||
"message": f"无效的加热台ID: {station_id}",
|
"message": f"无效的加热台ID: {station_id}",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
with self._stations_lock:
|
with self._stations_lock:
|
||||||
@@ -538,6 +598,9 @@ class VirtualWorkbench:
|
|||||||
"material_id": "",
|
"material_id": "",
|
||||||
"output_position": f"C{output_number}",
|
"output_position": f"C{output_number}",
|
||||||
"message": f"加热台{station_id}上没有物料",
|
"message": f"加热台{station_id}上没有物料",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
if station.state != HeatingStationState.COMPLETED:
|
if station.state != HeatingStationState.COMPLETED:
|
||||||
@@ -547,6 +610,9 @@ class VirtualWorkbench:
|
|||||||
"material_id": material_id,
|
"material_id": material_id,
|
||||||
"output_position": f"C{output_number}",
|
"output_position": f"C{output_number}",
|
||||||
"message": f"加热台{station_id}尚未完成加热 (当前状态: {station.state.value})",
|
"message": f"加热台{station_id}尚未完成加热 (当前状态: {station.state.value})",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
output_position = f"C{output_number}"
|
output_position = f"C{output_number}"
|
||||||
@@ -595,6 +661,9 @@ class VirtualWorkbench:
|
|||||||
"material_id": material_id,
|
"material_id": material_id,
|
||||||
"output_position": output_position,
|
"output_position": output_position,
|
||||||
"message": f"{material_id}已成功移动到{output_position}",
|
"message": f"{material_id}已成功移动到{output_position}",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
@@ -607,6 +676,9 @@ class VirtualWorkbench:
|
|||||||
"material_id": "",
|
"material_id": "",
|
||||||
"output_position": output_position,
|
"output_position": output_position,
|
||||||
"message": f"移动失败: {str(e)}",
|
"message": f"移动失败: {str(e)}",
|
||||||
|
"unilabos_samples": [
|
||||||
|
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||||
|
sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
# ============ 状态属性 ============
|
# ============ 状态属性 ============
|
||||||
|
|||||||
@@ -96,10 +96,13 @@ serial:
|
|||||||
type: string
|
type: string
|
||||||
port:
|
port:
|
||||||
type: string
|
type: string
|
||||||
|
registry_name:
|
||||||
|
type: string
|
||||||
resource_tracker:
|
resource_tracker:
|
||||||
type: object
|
type: object
|
||||||
required:
|
required:
|
||||||
- device_id
|
- device_id
|
||||||
|
- registry_name
|
||||||
- port
|
- port
|
||||||
type: object
|
type: object
|
||||||
data:
|
data:
|
||||||
|
|||||||
@@ -67,6 +67,9 @@ camera:
|
|||||||
period:
|
period:
|
||||||
default: 0.1
|
default: 0.1
|
||||||
type: number
|
type: number
|
||||||
|
registry_name:
|
||||||
|
default: ''
|
||||||
|
type: string
|
||||||
resource_tracker:
|
resource_tracker:
|
||||||
type: object
|
type: object
|
||||||
required: []
|
required: []
|
||||||
|
|||||||
@@ -638,7 +638,7 @@ liquid_handler:
|
|||||||
placeholder_keys: {}
|
placeholder_keys: {}
|
||||||
result: {}
|
result: {}
|
||||||
schema:
|
schema:
|
||||||
description: 吸头迭代函数。用于自动管理和切换吸头架中的吸头,实现批量实验中的吸头自动分配和追踪。该函数监控吸头使用状态,自动切换到下一个可用吸头位置,确保实验流程的连续性。适用于高通量实验、批量处理、自动化流水线等需要大量吸头管理的应用场景。
|
description: 吸头迭代函数。用于自动管理和切换枪头盒中的吸头,实现批量实验中的吸头自动分配和追踪。该函数监控吸头使用状态,自动切换到下一个可用吸头位置,确保实验流程的连续性。适用于高通量实验、批量处理、自动化流水线等需要大量吸头管理的应用场景。
|
||||||
properties:
|
properties:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
@@ -712,6 +712,43 @@ liquid_handler:
|
|||||||
title: set_group参数
|
title: set_group参数
|
||||||
type: object
|
type: object
|
||||||
type: UniLabJsonCommand
|
type: UniLabJsonCommand
|
||||||
|
auto-set_liquid_from_plate:
|
||||||
|
feedback: {}
|
||||||
|
goal: {}
|
||||||
|
goal_default:
|
||||||
|
liquid_names: null
|
||||||
|
plate: null
|
||||||
|
volumes: null
|
||||||
|
well_names: null
|
||||||
|
handles: {}
|
||||||
|
placeholder_keys: {}
|
||||||
|
result: {}
|
||||||
|
schema:
|
||||||
|
description: ''
|
||||||
|
properties:
|
||||||
|
feedback: {}
|
||||||
|
goal:
|
||||||
|
properties:
|
||||||
|
liquid_names:
|
||||||
|
type: string
|
||||||
|
plate:
|
||||||
|
type: string
|
||||||
|
volumes:
|
||||||
|
type: string
|
||||||
|
well_names:
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- plate
|
||||||
|
- well_names
|
||||||
|
- liquid_names
|
||||||
|
- volumes
|
||||||
|
type: object
|
||||||
|
result: {}
|
||||||
|
required:
|
||||||
|
- goal
|
||||||
|
title: set_liquid_from_plate参数
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommand
|
||||||
auto-set_tiprack:
|
auto-set_tiprack:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal: {}
|
goal: {}
|
||||||
@@ -721,7 +758,7 @@ liquid_handler:
|
|||||||
placeholder_keys: {}
|
placeholder_keys: {}
|
||||||
result: {}
|
result: {}
|
||||||
schema:
|
schema:
|
||||||
description: 吸头架设置函数。用于配置和初始化液体处理系统的吸头架信息,包括吸头架位置、类型、容量等参数。该函数建立吸头资源管理系统,为后续的吸头选择和使用提供基础配置。适用于系统初始化、吸头架更换、实验配置等需要吸头资源管理的操作场景。
|
description: 枪头盒设置函数。用于配置和初始化液体处理系统的枪头盒信息,包括枪头盒位置、类型、容量等参数。该函数建立吸头资源管理系统,为后续的吸头选择和使用提供基础配置。适用于系统初始化、枪头盒更换、实验配置等需要吸头资源管理的操作场景。
|
||||||
properties:
|
properties:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
@@ -4093,32 +4130,32 @@ liquid_handler:
|
|||||||
- 0
|
- 0
|
||||||
handles:
|
handles:
|
||||||
input:
|
input:
|
||||||
- data_key: liquid
|
- data_key: sources
|
||||||
data_source: handle
|
data_source: handle
|
||||||
data_type: resource
|
data_type: resource
|
||||||
handler_key: sources
|
handler_key: sources
|
||||||
label: sources
|
label: 待移动液体
|
||||||
- data_key: liquid
|
- data_key: targets
|
||||||
data_source: executor
|
|
||||||
data_type: resource
|
|
||||||
handler_key: targets
|
|
||||||
label: targets
|
|
||||||
- data_key: liquid
|
|
||||||
data_source: executor
|
|
||||||
data_type: resource
|
|
||||||
handler_key: tip_rack
|
|
||||||
label: tip_rack
|
|
||||||
output:
|
|
||||||
- data_key: liquid
|
|
||||||
data_source: handle
|
data_source: handle
|
||||||
data_type: resource
|
data_type: resource
|
||||||
|
handler_key: targets
|
||||||
|
label: 转移目标
|
||||||
|
- data_key: tip_racks
|
||||||
|
data_source: handle
|
||||||
|
data_type: resource
|
||||||
|
handler_key: tip_rack
|
||||||
|
label: 枪头盒
|
||||||
|
output:
|
||||||
|
- data_key: sources.@flatten
|
||||||
|
data_source: executor
|
||||||
|
data_type: resource
|
||||||
handler_key: sources_out
|
handler_key: sources_out
|
||||||
label: sources
|
label: 移液后源孔
|
||||||
- data_key: liquid
|
- data_key: targets.@flatten
|
||||||
data_source: executor
|
data_source: executor
|
||||||
data_type: resource
|
data_type: resource
|
||||||
handler_key: targets_out
|
handler_key: targets_out
|
||||||
label: targets
|
label: 移液后目标孔
|
||||||
placeholder_keys:
|
placeholder_keys:
|
||||||
sources: unilabos_resources
|
sources: unilabos_resources
|
||||||
targets: unilabos_resources
|
targets: unilabos_resources
|
||||||
@@ -5114,19 +5151,34 @@ liquid_handler.biomek:
|
|||||||
- 0
|
- 0
|
||||||
handles:
|
handles:
|
||||||
input:
|
input:
|
||||||
- data_key: liquid
|
- data_key: sources
|
||||||
data_source: handle
|
data_source: handle
|
||||||
data_type: resource
|
data_type: resource
|
||||||
handler_key: liquid-input
|
handler_key: sources
|
||||||
io_type: target
|
io_type: target
|
||||||
label: Liquid Input
|
label: 待移动液体
|
||||||
|
- data_key: targets
|
||||||
|
data_source: handle
|
||||||
|
data_type: resource
|
||||||
|
handler_key: targets
|
||||||
|
label: 转移目标
|
||||||
|
- data_key: tip_racks
|
||||||
|
data_source: handle
|
||||||
|
data_type: resource
|
||||||
|
handler_key: tip_rack
|
||||||
|
label: 枪头盒
|
||||||
output:
|
output:
|
||||||
- data_key: liquid
|
- data_key: sources.@flatten
|
||||||
data_source: executor
|
data_source: executor
|
||||||
data_type: resource
|
data_type: resource
|
||||||
handler_key: liquid-output
|
handler_key: sources_out
|
||||||
io_type: source
|
io_type: source
|
||||||
label: Liquid Output
|
label: 移液后源孔
|
||||||
|
- data_key: targets.@flatten
|
||||||
|
data_source: executor
|
||||||
|
data_type: resource
|
||||||
|
handler_key: targets_out
|
||||||
|
label: 移液后目标孔
|
||||||
placeholder_keys:
|
placeholder_keys:
|
||||||
sources: unilabos_resources
|
sources: unilabos_resources
|
||||||
targets: unilabos_resources
|
targets: unilabos_resources
|
||||||
@@ -9416,7 +9468,7 @@ liquid_handler.prcxi:
|
|||||||
well_names: null
|
well_names: null
|
||||||
handles:
|
handles:
|
||||||
input:
|
input:
|
||||||
- data_key: plate
|
- data_key: '@this.0@@@plate'
|
||||||
data_source: handle
|
data_source: handle
|
||||||
data_type: resource
|
data_type: resource
|
||||||
handler_key: input_plate
|
handler_key: input_plate
|
||||||
@@ -9538,9 +9590,195 @@ liquid_handler.prcxi:
|
|||||||
- volumes
|
- volumes
|
||||||
type: object
|
type: object
|
||||||
result:
|
result:
|
||||||
|
$defs:
|
||||||
|
ResourceDict:
|
||||||
|
properties:
|
||||||
|
class:
|
||||||
|
description: Resource class name
|
||||||
|
title: Class
|
||||||
|
type: string
|
||||||
|
config:
|
||||||
|
additionalProperties: true
|
||||||
|
description: Resource configuration
|
||||||
|
title: Config
|
||||||
|
type: object
|
||||||
|
data:
|
||||||
|
additionalProperties: true
|
||||||
|
description: 'Resource data, eg: container liquid data'
|
||||||
|
title: Data
|
||||||
|
type: object
|
||||||
|
description:
|
||||||
|
default: ''
|
||||||
|
description: Resource description
|
||||||
|
title: Description
|
||||||
|
type: string
|
||||||
|
extra:
|
||||||
|
additionalProperties: true
|
||||||
|
description: 'Extra data, eg: slot index'
|
||||||
|
title: Extra
|
||||||
|
type: object
|
||||||
|
icon:
|
||||||
|
default: ''
|
||||||
|
description: Resource icon
|
||||||
|
title: Icon
|
||||||
|
type: string
|
||||||
|
id:
|
||||||
|
description: Resource ID
|
||||||
|
title: Id
|
||||||
|
type: string
|
||||||
|
model:
|
||||||
|
additionalProperties: true
|
||||||
|
description: Resource model
|
||||||
|
title: Model
|
||||||
|
type: object
|
||||||
|
name:
|
||||||
|
description: Resource name
|
||||||
|
title: Name
|
||||||
|
type: string
|
||||||
|
parent:
|
||||||
|
anyOf:
|
||||||
|
- $ref: '#/$defs/ResourceDict'
|
||||||
|
- type: 'null'
|
||||||
|
default: null
|
||||||
|
description: Parent resource object
|
||||||
|
parent_uuid:
|
||||||
|
anyOf:
|
||||||
|
- type: string
|
||||||
|
- type: 'null'
|
||||||
|
default: null
|
||||||
|
description: Parent resource uuid
|
||||||
|
title: Parent Uuid
|
||||||
|
pose:
|
||||||
|
$ref: '#/$defs/ResourceDictPosition'
|
||||||
|
description: Resource position
|
||||||
|
schema:
|
||||||
|
additionalProperties: true
|
||||||
|
description: Resource schema
|
||||||
|
title: Schema
|
||||||
|
type: object
|
||||||
|
type:
|
||||||
|
anyOf:
|
||||||
|
- const: device
|
||||||
|
type: string
|
||||||
|
- type: string
|
||||||
|
description: Resource type
|
||||||
|
title: Type
|
||||||
|
uuid:
|
||||||
|
description: Resource UUID
|
||||||
|
title: Uuid
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- id
|
||||||
|
- uuid
|
||||||
|
- name
|
||||||
|
- type
|
||||||
|
- class
|
||||||
|
- config
|
||||||
|
- data
|
||||||
|
- extra
|
||||||
|
title: ResourceDict
|
||||||
|
type: object
|
||||||
|
ResourceDictPosition:
|
||||||
|
properties:
|
||||||
|
cross_section_type:
|
||||||
|
default: rectangle
|
||||||
|
description: Cross section type
|
||||||
|
enum:
|
||||||
|
- rectangle
|
||||||
|
- circle
|
||||||
|
- rounded_rectangle
|
||||||
|
title: Cross Section Type
|
||||||
|
type: string
|
||||||
|
layout:
|
||||||
|
default: x-y
|
||||||
|
description: Resource layout
|
||||||
|
enum:
|
||||||
|
- 2d
|
||||||
|
- x-y
|
||||||
|
- z-y
|
||||||
|
- x-z
|
||||||
|
title: Layout
|
||||||
|
type: string
|
||||||
|
position:
|
||||||
|
$ref: '#/$defs/ResourceDictPositionObject'
|
||||||
|
description: Resource position
|
||||||
|
position3d:
|
||||||
|
$ref: '#/$defs/ResourceDictPositionObject'
|
||||||
|
description: Resource position in 3D space
|
||||||
|
rotation:
|
||||||
|
$ref: '#/$defs/ResourceDictPositionObject'
|
||||||
|
description: Resource rotation
|
||||||
|
scale:
|
||||||
|
$ref: '#/$defs/ResourceDictPositionScale'
|
||||||
|
description: Resource scale
|
||||||
|
size:
|
||||||
|
$ref: '#/$defs/ResourceDictPositionSize'
|
||||||
|
description: Resource size
|
||||||
|
title: ResourceDictPosition
|
||||||
|
type: object
|
||||||
|
ResourceDictPositionObject:
|
||||||
|
properties:
|
||||||
|
x:
|
||||||
|
default: 0.0
|
||||||
|
description: X coordinate
|
||||||
|
title: X
|
||||||
|
type: number
|
||||||
|
y:
|
||||||
|
default: 0.0
|
||||||
|
description: Y coordinate
|
||||||
|
title: Y
|
||||||
|
type: number
|
||||||
|
z:
|
||||||
|
default: 0.0
|
||||||
|
description: Z coordinate
|
||||||
|
title: Z
|
||||||
|
type: number
|
||||||
|
title: ResourceDictPositionObject
|
||||||
|
type: object
|
||||||
|
ResourceDictPositionScale:
|
||||||
|
properties:
|
||||||
|
x:
|
||||||
|
default: 0.0
|
||||||
|
description: x scale
|
||||||
|
title: X
|
||||||
|
type: number
|
||||||
|
y:
|
||||||
|
default: 0.0
|
||||||
|
description: y scale
|
||||||
|
title: Y
|
||||||
|
type: number
|
||||||
|
z:
|
||||||
|
default: 0.0
|
||||||
|
description: z scale
|
||||||
|
title: Z
|
||||||
|
type: number
|
||||||
|
title: ResourceDictPositionScale
|
||||||
|
type: object
|
||||||
|
ResourceDictPositionSize:
|
||||||
|
properties:
|
||||||
|
depth:
|
||||||
|
default: 0.0
|
||||||
|
description: Depth
|
||||||
|
title: Depth
|
||||||
|
type: number
|
||||||
|
height:
|
||||||
|
default: 0.0
|
||||||
|
description: Height
|
||||||
|
title: Height
|
||||||
|
type: number
|
||||||
|
width:
|
||||||
|
default: 0.0
|
||||||
|
description: Width
|
||||||
|
title: Width
|
||||||
|
type: number
|
||||||
|
title: ResourceDictPositionSize
|
||||||
|
type: object
|
||||||
properties:
|
properties:
|
||||||
plate:
|
plate:
|
||||||
items: {}
|
items:
|
||||||
|
items:
|
||||||
|
$ref: '#/$defs/ResourceDict'
|
||||||
|
type: array
|
||||||
title: Plate
|
title: Plate
|
||||||
type: array
|
type: array
|
||||||
volumes:
|
volumes:
|
||||||
@@ -9549,7 +9787,10 @@ liquid_handler.prcxi:
|
|||||||
title: Volumes
|
title: Volumes
|
||||||
type: array
|
type: array
|
||||||
wells:
|
wells:
|
||||||
items: {}
|
items:
|
||||||
|
items:
|
||||||
|
$ref: '#/$defs/ResourceDict'
|
||||||
|
type: array
|
||||||
title: Wells
|
title: Wells
|
||||||
type: array
|
type: array
|
||||||
required:
|
required:
|
||||||
@@ -9922,18 +10163,18 @@ liquid_handler.prcxi:
|
|||||||
data_source: handle
|
data_source: handle
|
||||||
data_type: resource
|
data_type: resource
|
||||||
handler_key: tip_rack_identifier
|
handler_key: tip_rack_identifier
|
||||||
label: 墙头盒
|
label: 枪头盒
|
||||||
output:
|
output:
|
||||||
- data_key: liquid
|
- data_key: sources.@flatten
|
||||||
data_source: handle
|
data_source: executor
|
||||||
data_type: resource
|
data_type: resource
|
||||||
handler_key: sources_out
|
handler_key: sources_out
|
||||||
label: sources
|
label: 移液后源孔
|
||||||
- data_key: liquid
|
- data_key: targets.@flatten
|
||||||
data_source: executor
|
data_source: executor
|
||||||
data_type: resource
|
data_type: resource
|
||||||
handler_key: targets_out
|
handler_key: targets_out
|
||||||
label: targets
|
label: 移液后目标孔
|
||||||
placeholder_keys:
|
placeholder_keys:
|
||||||
sources: unilabos_resources
|
sources: unilabos_resources
|
||||||
targets: unilabos_resources
|
targets: unilabos_resources
|
||||||
|
|||||||
@@ -5835,6 +5835,25 @@ virtual_workbench:
|
|||||||
- material_number
|
- material_number
|
||||||
type: object
|
type: object
|
||||||
result:
|
result:
|
||||||
|
$defs:
|
||||||
|
LabSample:
|
||||||
|
properties:
|
||||||
|
extra:
|
||||||
|
additionalProperties: true
|
||||||
|
title: Extra
|
||||||
|
type: object
|
||||||
|
oss_path:
|
||||||
|
title: Oss Path
|
||||||
|
type: string
|
||||||
|
sample_uuid:
|
||||||
|
title: Sample Uuid
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- sample_uuid
|
||||||
|
- oss_path
|
||||||
|
- extra
|
||||||
|
title: LabSample
|
||||||
|
type: object
|
||||||
description: move_to_heating_station 返回类型
|
description: move_to_heating_station 返回类型
|
||||||
properties:
|
properties:
|
||||||
material_id:
|
material_id:
|
||||||
@@ -5853,12 +5872,18 @@ virtual_workbench:
|
|||||||
success:
|
success:
|
||||||
title: Success
|
title: Success
|
||||||
type: boolean
|
type: boolean
|
||||||
|
unilabos_samples:
|
||||||
|
items:
|
||||||
|
$ref: '#/$defs/LabSample'
|
||||||
|
title: Unilabos Samples
|
||||||
|
type: array
|
||||||
required:
|
required:
|
||||||
- success
|
- success
|
||||||
- station_id
|
- station_id
|
||||||
- material_id
|
- material_id
|
||||||
- material_number
|
- material_number
|
||||||
- message
|
- message
|
||||||
|
- unilabos_samples
|
||||||
title: MoveToHeatingStationResult
|
title: MoveToHeatingStationResult
|
||||||
type: object
|
type: object
|
||||||
required:
|
required:
|
||||||
@@ -5903,6 +5928,25 @@ virtual_workbench:
|
|||||||
- material_number
|
- material_number
|
||||||
type: object
|
type: object
|
||||||
result:
|
result:
|
||||||
|
$defs:
|
||||||
|
LabSample:
|
||||||
|
properties:
|
||||||
|
extra:
|
||||||
|
additionalProperties: true
|
||||||
|
title: Extra
|
||||||
|
type: object
|
||||||
|
oss_path:
|
||||||
|
title: Oss Path
|
||||||
|
type: string
|
||||||
|
sample_uuid:
|
||||||
|
title: Sample Uuid
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- sample_uuid
|
||||||
|
- oss_path
|
||||||
|
- extra
|
||||||
|
title: LabSample
|
||||||
|
type: object
|
||||||
description: move_to_output 返回类型
|
description: move_to_output 返回类型
|
||||||
properties:
|
properties:
|
||||||
material_id:
|
material_id:
|
||||||
@@ -5914,10 +5958,16 @@ virtual_workbench:
|
|||||||
success:
|
success:
|
||||||
title: Success
|
title: Success
|
||||||
type: boolean
|
type: boolean
|
||||||
|
unilabos_samples:
|
||||||
|
items:
|
||||||
|
$ref: '#/$defs/LabSample'
|
||||||
|
title: Unilabos Samples
|
||||||
|
type: array
|
||||||
required:
|
required:
|
||||||
- success
|
- success
|
||||||
- station_id
|
- station_id
|
||||||
- material_id
|
- material_id
|
||||||
|
- unilabos_samples
|
||||||
title: MoveToOutputResult
|
title: MoveToOutputResult
|
||||||
type: object
|
type: object
|
||||||
required:
|
required:
|
||||||
@@ -5972,6 +6022,25 @@ virtual_workbench:
|
|||||||
required: []
|
required: []
|
||||||
type: object
|
type: object
|
||||||
result:
|
result:
|
||||||
|
$defs:
|
||||||
|
LabSample:
|
||||||
|
properties:
|
||||||
|
extra:
|
||||||
|
additionalProperties: true
|
||||||
|
title: Extra
|
||||||
|
type: object
|
||||||
|
oss_path:
|
||||||
|
title: Oss Path
|
||||||
|
type: string
|
||||||
|
sample_uuid:
|
||||||
|
title: Sample Uuid
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- sample_uuid
|
||||||
|
- oss_path
|
||||||
|
- extra
|
||||||
|
title: LabSample
|
||||||
|
type: object
|
||||||
description: prepare_materials 返回类型 - 批量准备物料
|
description: prepare_materials 返回类型 - 批量准备物料
|
||||||
properties:
|
properties:
|
||||||
count:
|
count:
|
||||||
@@ -5998,6 +6067,11 @@ virtual_workbench:
|
|||||||
success:
|
success:
|
||||||
title: Success
|
title: Success
|
||||||
type: boolean
|
type: boolean
|
||||||
|
unilabos_samples:
|
||||||
|
items:
|
||||||
|
$ref: '#/$defs/LabSample'
|
||||||
|
title: Unilabos Samples
|
||||||
|
type: array
|
||||||
required:
|
required:
|
||||||
- success
|
- success
|
||||||
- count
|
- count
|
||||||
@@ -6007,6 +6081,7 @@ virtual_workbench:
|
|||||||
- material_4
|
- material_4
|
||||||
- material_5
|
- material_5
|
||||||
- message
|
- message
|
||||||
|
- unilabos_samples
|
||||||
title: PrepareMaterialsResult
|
title: PrepareMaterialsResult
|
||||||
type: object
|
type: object
|
||||||
required:
|
required:
|
||||||
@@ -6015,6 +6090,7 @@ virtual_workbench:
|
|||||||
type: object
|
type: object
|
||||||
type: UniLabJsonCommand
|
type: UniLabJsonCommand
|
||||||
auto-start_heating:
|
auto-start_heating:
|
||||||
|
always_free: true
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal: {}
|
goal: {}
|
||||||
goal_default:
|
goal_default:
|
||||||
@@ -6062,6 +6138,25 @@ virtual_workbench:
|
|||||||
- material_number
|
- material_number
|
||||||
type: object
|
type: object
|
||||||
result:
|
result:
|
||||||
|
$defs:
|
||||||
|
LabSample:
|
||||||
|
properties:
|
||||||
|
extra:
|
||||||
|
additionalProperties: true
|
||||||
|
title: Extra
|
||||||
|
type: object
|
||||||
|
oss_path:
|
||||||
|
title: Oss Path
|
||||||
|
type: string
|
||||||
|
sample_uuid:
|
||||||
|
title: Sample Uuid
|
||||||
|
type: string
|
||||||
|
required:
|
||||||
|
- sample_uuid
|
||||||
|
- oss_path
|
||||||
|
- extra
|
||||||
|
title: LabSample
|
||||||
|
type: object
|
||||||
description: start_heating 返回类型
|
description: start_heating 返回类型
|
||||||
properties:
|
properties:
|
||||||
material_id:
|
material_id:
|
||||||
@@ -6079,12 +6174,18 @@ virtual_workbench:
|
|||||||
success:
|
success:
|
||||||
title: Success
|
title: Success
|
||||||
type: boolean
|
type: boolean
|
||||||
|
unilabos_samples:
|
||||||
|
items:
|
||||||
|
$ref: '#/$defs/LabSample'
|
||||||
|
title: Unilabos Samples
|
||||||
|
type: array
|
||||||
required:
|
required:
|
||||||
- success
|
- success
|
||||||
- station_id
|
- station_id
|
||||||
- material_id
|
- material_id
|
||||||
- material_number
|
- material_number
|
||||||
- message
|
- message
|
||||||
|
- unilabos_samples
|
||||||
title: StartHeatingResult
|
title: StartHeatingResult
|
||||||
type: object
|
type: object
|
||||||
required:
|
required:
|
||||||
|
|||||||
@@ -5,6 +5,7 @@ import sys
|
|||||||
import inspect
|
import inspect
|
||||||
import importlib
|
import importlib
|
||||||
import threading
|
import threading
|
||||||
|
import traceback
|
||||||
from concurrent.futures import ThreadPoolExecutor, as_completed
|
from concurrent.futures import ThreadPoolExecutor, as_completed
|
||||||
from pathlib import Path
|
from pathlib import Path
|
||||||
from typing import Any, Dict, List, Union, Tuple
|
from typing import Any, Dict, List, Union, Tuple
|
||||||
@@ -88,6 +89,14 @@ class Registry:
|
|||||||
)
|
)
|
||||||
test_latency_schema["description"] = "用于测试延迟的动作,返回延迟时间和时间差。"
|
test_latency_schema["description"] = "用于测试延迟的动作,返回延迟时间和时间差。"
|
||||||
|
|
||||||
|
test_resource_method_info = host_node_enhanced_info.get("action_methods", {}).get("test_resource", {})
|
||||||
|
test_resource_schema = self._generate_unilab_json_command_schema(
|
||||||
|
test_resource_method_info.get("args", []),
|
||||||
|
"test_resource",
|
||||||
|
test_resource_method_info.get("return_annotation"),
|
||||||
|
)
|
||||||
|
test_resource_schema["description"] = "用于测试物料、设备和样本。"
|
||||||
|
|
||||||
self.device_type_registry.update(
|
self.device_type_registry.update(
|
||||||
{
|
{
|
||||||
"host_node": {
|
"host_node": {
|
||||||
@@ -189,32 +198,7 @@ class Registry:
|
|||||||
"goal": {},
|
"goal": {},
|
||||||
"feedback": {},
|
"feedback": {},
|
||||||
"result": {},
|
"result": {},
|
||||||
"schema": {
|
"schema": test_resource_schema,
|
||||||
"description": "",
|
|
||||||
"properties": {
|
|
||||||
"feedback": {},
|
|
||||||
"goal": {
|
|
||||||
"properties": {
|
|
||||||
"resource": ros_message_to_json_schema(Resource, "resource"),
|
|
||||||
"resources": {
|
|
||||||
"items": {
|
|
||||||
"properties": ros_message_to_json_schema(
|
|
||||||
Resource, "resources"
|
|
||||||
),
|
|
||||||
"type": "object",
|
|
||||||
},
|
|
||||||
"type": "array",
|
|
||||||
},
|
|
||||||
"device": {"type": "string"},
|
|
||||||
"devices": {"items": {"type": "string"}, "type": "array"},
|
|
||||||
},
|
|
||||||
"type": "object",
|
|
||||||
},
|
|
||||||
"result": {},
|
|
||||||
},
|
|
||||||
"title": "test_resource",
|
|
||||||
"type": "object",
|
|
||||||
},
|
|
||||||
"placeholder_keys": {
|
"placeholder_keys": {
|
||||||
"device": "unilabos_devices",
|
"device": "unilabos_devices",
|
||||||
"devices": "unilabos_devices",
|
"devices": "unilabos_devices",
|
||||||
@@ -838,6 +822,7 @@ class Registry:
|
|||||||
("list", "unilabos.registry.placeholder_type:DeviceSlot"),
|
("list", "unilabos.registry.placeholder_type:DeviceSlot"),
|
||||||
]
|
]
|
||||||
},
|
},
|
||||||
|
**({"always_free": True} if v.get("always_free") else {}),
|
||||||
}
|
}
|
||||||
for k, v in enhanced_info["action_methods"].items()
|
for k, v in enhanced_info["action_methods"].items()
|
||||||
if k not in device_config["class"]["action_value_mappings"]
|
if k not in device_config["class"]["action_value_mappings"]
|
||||||
@@ -943,6 +928,7 @@ class Registry:
|
|||||||
if is_valid:
|
if is_valid:
|
||||||
results.append((file, data, device_ids))
|
results.append((file, data, device_ids))
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
|
traceback.print_exc()
|
||||||
logger.warning(f"[UniLab Registry] 处理设备文件异常: {file}, 错误: {e}")
|
logger.warning(f"[UniLab Registry] 处理设备文件异常: {file}, 错误: {e}")
|
||||||
|
|
||||||
# 线程安全地更新注册表
|
# 线程安全地更新注册表
|
||||||
|
|||||||
6884
unilabos/registry/resources/opentrons/lab.yaml
Normal file
6884
unilabos/registry/resources/opentrons/lab.yaml
Normal file
File diff suppressed because it is too large
Load Diff
@@ -151,12 +151,40 @@ def canonicalize_links_ports(links: List[Dict[str, Any]], resource_tree_set: Res
|
|||||||
"""
|
"""
|
||||||
# 构建 id 到 uuid 的映射
|
# 构建 id 到 uuid 的映射
|
||||||
id_to_uuid: Dict[str, str] = {}
|
id_to_uuid: Dict[str, str] = {}
|
||||||
|
uuid_to_id: Dict[str, str] = {}
|
||||||
for node in resource_tree_set.all_nodes:
|
for node in resource_tree_set.all_nodes:
|
||||||
id_to_uuid[node.res_content.id] = node.res_content.uuid
|
id_to_uuid[node.res_content.id] = node.res_content.uuid
|
||||||
|
uuid_to_id[node.res_content.uuid] = node.res_content.id
|
||||||
|
|
||||||
|
# 第三遍处理:为每个 link 添加 source_uuid 和 target_uuid
|
||||||
|
for link in links:
|
||||||
|
source_id = link.get("source")
|
||||||
|
target_id = link.get("target")
|
||||||
|
|
||||||
|
# 添加 source_uuid
|
||||||
|
if source_id and source_id in id_to_uuid:
|
||||||
|
link["source_uuid"] = id_to_uuid[source_id]
|
||||||
|
|
||||||
|
# 添加 target_uuid
|
||||||
|
if target_id and target_id in id_to_uuid:
|
||||||
|
link["target_uuid"] = id_to_uuid[target_id]
|
||||||
|
|
||||||
|
source_uuid = link.get("source_uuid")
|
||||||
|
target_uuid = link.get("target_uuid")
|
||||||
|
|
||||||
|
# 添加 source_uuid
|
||||||
|
if source_uuid and source_uuid in uuid_to_id:
|
||||||
|
link["source"] = uuid_to_id[source_uuid]
|
||||||
|
|
||||||
|
# 添加 target_uuid
|
||||||
|
if target_uuid and target_uuid in uuid_to_id:
|
||||||
|
link["target"] = uuid_to_id[target_uuid]
|
||||||
|
|
||||||
# 第一遍处理:将字符串类型的port转换为字典格式
|
# 第一遍处理:将字符串类型的port转换为字典格式
|
||||||
for link in links:
|
for link in links:
|
||||||
port = link.get("port")
|
port = link.get("port")
|
||||||
|
if port is None:
|
||||||
|
continue
|
||||||
if link.get("type", "physical") == "physical":
|
if link.get("type", "physical") == "physical":
|
||||||
link["type"] = "fluid"
|
link["type"] = "fluid"
|
||||||
if isinstance(port, int):
|
if isinstance(port, int):
|
||||||
@@ -179,13 +207,15 @@ def canonicalize_links_ports(links: List[Dict[str, Any]], resource_tree_set: Res
|
|||||||
link["port"] = {link["source"]: None, link["target"]: None}
|
link["port"] = {link["source"]: None, link["target"]: None}
|
||||||
|
|
||||||
# 构建边字典,键为(source节点, target节点),值为对应的port信息
|
# 构建边字典,键为(source节点, target节点),值为对应的port信息
|
||||||
edges = {(link["source"], link["target"]): link["port"] for link in links}
|
edges = {(link["source"], link["target"]): link["port"] for link in links if link.get("port")}
|
||||||
|
|
||||||
# 第二遍处理:填充反向边的dest信息
|
# 第二遍处理:填充反向边的dest信息
|
||||||
delete_reverses = []
|
delete_reverses = []
|
||||||
for i, link in enumerate(links):
|
for i, link in enumerate(links):
|
||||||
s, t = link["source"], link["target"]
|
s, t = link["source"], link["target"]
|
||||||
current_port = link["port"]
|
current_port = link.get("port")
|
||||||
|
if current_port is None:
|
||||||
|
continue
|
||||||
if current_port.get(t) is None:
|
if current_port.get(t) is None:
|
||||||
reverse_key = (t, s)
|
reverse_key = (t, s)
|
||||||
reverse_port = edges.get(reverse_key)
|
reverse_port = edges.get(reverse_key)
|
||||||
@@ -200,20 +230,6 @@ def canonicalize_links_ports(links: List[Dict[str, Any]], resource_tree_set: Res
|
|||||||
current_port[t] = current_port[s]
|
current_port[t] = current_port[s]
|
||||||
# 删除已被使用反向端口信息的反向边
|
# 删除已被使用反向端口信息的反向边
|
||||||
standardized_links = [link for i, link in enumerate(links) if i not in delete_reverses]
|
standardized_links = [link for i, link in enumerate(links) if i not in delete_reverses]
|
||||||
|
|
||||||
# 第三遍处理:为每个 link 添加 source_uuid 和 target_uuid
|
|
||||||
for link in standardized_links:
|
|
||||||
source_id = link.get("source")
|
|
||||||
target_id = link.get("target")
|
|
||||||
|
|
||||||
# 添加 source_uuid
|
|
||||||
if source_id and source_id in id_to_uuid:
|
|
||||||
link["source_uuid"] = id_to_uuid[source_id]
|
|
||||||
|
|
||||||
# 添加 target_uuid
|
|
||||||
if target_id and target_id in id_to_uuid:
|
|
||||||
link["target_uuid"] = id_to_uuid[target_id]
|
|
||||||
|
|
||||||
return standardized_links
|
return standardized_links
|
||||||
|
|
||||||
|
|
||||||
@@ -284,6 +300,8 @@ def modify_to_backend_format(data: list[dict[str, Any]]) -> list[dict[str, Any]]
|
|||||||
edge["sourceHandle"] = port[source]
|
edge["sourceHandle"] = port[source]
|
||||||
elif "source_port" in edge:
|
elif "source_port" in edge:
|
||||||
edge["sourceHandle"] = edge.pop("source_port")
|
edge["sourceHandle"] = edge.pop("source_port")
|
||||||
|
elif "source_handle" in edge:
|
||||||
|
edge["sourceHandle"] = edge.pop("source_handle")
|
||||||
else:
|
else:
|
||||||
typ = edge.get("type")
|
typ = edge.get("type")
|
||||||
if typ == "communication":
|
if typ == "communication":
|
||||||
@@ -292,6 +310,8 @@ def modify_to_backend_format(data: list[dict[str, Any]]) -> list[dict[str, Any]]
|
|||||||
edge["targetHandle"] = port[target]
|
edge["targetHandle"] = port[target]
|
||||||
elif "target_port" in edge:
|
elif "target_port" in edge:
|
||||||
edge["targetHandle"] = edge.pop("target_port")
|
edge["targetHandle"] = edge.pop("target_port")
|
||||||
|
elif "target_handle" in edge:
|
||||||
|
edge["targetHandle"] = edge.pop("target_handle")
|
||||||
else:
|
else:
|
||||||
typ = edge.get("type")
|
typ = edge.get("type")
|
||||||
if typ == "communication":
|
if typ == "communication":
|
||||||
|
|||||||
3681
unilabos/resources/lab_resources.py
Normal file
3681
unilabos/resources/lab_resources.py
Normal file
File diff suppressed because it is too large
Load Diff
1
unilabos/resources/opentrons_custom_labware_defs.json
Normal file
1
unilabos/resources/opentrons_custom_labware_defs.json
Normal file
File diff suppressed because one or more lines are too long
@@ -5,6 +5,8 @@ from pydantic import BaseModel, field_serializer, field_validator, ValidationErr
|
|||||||
from pydantic import Field
|
from pydantic import Field
|
||||||
from typing import List, Tuple, Any, Dict, Literal, Optional, cast, TYPE_CHECKING, Union
|
from typing import List, Tuple, Any, Dict, Literal, Optional, cast, TYPE_CHECKING, Union
|
||||||
|
|
||||||
|
from typing_extensions import TypedDict
|
||||||
|
|
||||||
from unilabos.resources.plr_additional_res_reg import register
|
from unilabos.resources.plr_additional_res_reg import register
|
||||||
from unilabos.utils.log import logger
|
from unilabos.utils.log import logger
|
||||||
|
|
||||||
@@ -14,6 +16,32 @@ if TYPE_CHECKING:
|
|||||||
|
|
||||||
|
|
||||||
EXTRA_CLASS = "unilabos_resource_class"
|
EXTRA_CLASS = "unilabos_resource_class"
|
||||||
|
EXTRA_SAMPLE_UUID = "sample_uuid"
|
||||||
|
EXTRA_UNILABOS_SAMPLE_UUID = "unilabos_sample_uuid"
|
||||||
|
|
||||||
|
# 函数参数名常量 - 用于自动注入 sample_uuids 列表
|
||||||
|
PARAM_SAMPLE_UUIDS = "sample_uuids"
|
||||||
|
|
||||||
|
# JSON Command 中的系统参数字段名
|
||||||
|
JSON_UNILABOS_PARAM = "unilabos_param"
|
||||||
|
|
||||||
|
# 返回值中的 samples 字段名
|
||||||
|
RETURN_UNILABOS_SAMPLES = "unilabos_samples"
|
||||||
|
|
||||||
|
# sample_uuids 参数类型 (用于 virtual bench 等设备添加 sample_uuids 参数)
|
||||||
|
SampleUUIDsType = Dict[str, Optional["PLRResource"]]
|
||||||
|
|
||||||
|
|
||||||
|
class LabSample(TypedDict):
|
||||||
|
sample_uuid: str
|
||||||
|
oss_path: str
|
||||||
|
extra: Dict[str, Any]
|
||||||
|
|
||||||
|
|
||||||
|
class ResourceDictPositionSizeType(TypedDict):
|
||||||
|
depth: float
|
||||||
|
width: float
|
||||||
|
height: float
|
||||||
|
|
||||||
|
|
||||||
class ResourceDictPositionSize(BaseModel):
|
class ResourceDictPositionSize(BaseModel):
|
||||||
@@ -22,18 +50,40 @@ class ResourceDictPositionSize(BaseModel):
|
|||||||
height: float = Field(description="Height", default=0.0) # y
|
height: float = Field(description="Height", default=0.0) # y
|
||||||
|
|
||||||
|
|
||||||
|
class ResourceDictPositionScaleType(TypedDict):
|
||||||
|
x: float
|
||||||
|
y: float
|
||||||
|
z: float
|
||||||
|
|
||||||
|
|
||||||
class ResourceDictPositionScale(BaseModel):
|
class ResourceDictPositionScale(BaseModel):
|
||||||
x: float = Field(description="x scale", default=0.0)
|
x: float = Field(description="x scale", default=0.0)
|
||||||
y: float = Field(description="y scale", default=0.0)
|
y: float = Field(description="y scale", default=0.0)
|
||||||
z: float = Field(description="z scale", default=0.0)
|
z: float = Field(description="z scale", default=0.0)
|
||||||
|
|
||||||
|
|
||||||
|
class ResourceDictPositionObjectType(TypedDict):
|
||||||
|
x: float
|
||||||
|
y: float
|
||||||
|
z: float
|
||||||
|
|
||||||
|
|
||||||
class ResourceDictPositionObject(BaseModel):
|
class ResourceDictPositionObject(BaseModel):
|
||||||
x: float = Field(description="X coordinate", default=0.0)
|
x: float = Field(description="X coordinate", default=0.0)
|
||||||
y: float = Field(description="Y coordinate", default=0.0)
|
y: float = Field(description="Y coordinate", default=0.0)
|
||||||
z: float = Field(description="Z coordinate", default=0.0)
|
z: float = Field(description="Z coordinate", default=0.0)
|
||||||
|
|
||||||
|
|
||||||
|
class ResourceDictPositionType(TypedDict):
|
||||||
|
size: ResourceDictPositionSizeType
|
||||||
|
scale: ResourceDictPositionScaleType
|
||||||
|
layout: Literal["2d", "x-y", "z-y", "x-z"]
|
||||||
|
position: ResourceDictPositionObjectType
|
||||||
|
position3d: ResourceDictPositionObjectType
|
||||||
|
rotation: ResourceDictPositionObjectType
|
||||||
|
cross_section_type: Literal["rectangle", "circle", "rounded_rectangle"]
|
||||||
|
|
||||||
|
|
||||||
class ResourceDictPosition(BaseModel):
|
class ResourceDictPosition(BaseModel):
|
||||||
size: ResourceDictPositionSize = Field(description="Resource size", default_factory=ResourceDictPositionSize)
|
size: ResourceDictPositionSize = Field(description="Resource size", default_factory=ResourceDictPositionSize)
|
||||||
scale: ResourceDictPositionScale = Field(description="Resource scale", default_factory=ResourceDictPositionScale)
|
scale: ResourceDictPositionScale = Field(description="Resource scale", default_factory=ResourceDictPositionScale)
|
||||||
@@ -52,6 +102,24 @@ class ResourceDictPosition(BaseModel):
|
|||||||
)
|
)
|
||||||
|
|
||||||
|
|
||||||
|
class ResourceDictType(TypedDict):
|
||||||
|
id: str
|
||||||
|
uuid: str
|
||||||
|
name: str
|
||||||
|
description: str
|
||||||
|
resource_schema: Dict[str, Any]
|
||||||
|
model: Dict[str, Any]
|
||||||
|
icon: str
|
||||||
|
parent_uuid: Optional[str]
|
||||||
|
parent: Optional["ResourceDictType"]
|
||||||
|
type: Union[Literal["device"], str]
|
||||||
|
klass: str
|
||||||
|
pose: ResourceDictPositionType
|
||||||
|
config: Dict[str, Any]
|
||||||
|
data: Dict[str, Any]
|
||||||
|
extra: Dict[str, Any]
|
||||||
|
|
||||||
|
|
||||||
# 统一的资源字典模型,parent 自动序列化为 parent_uuid,children 不序列化
|
# 统一的资源字典模型,parent 自动序列化为 parent_uuid,children 不序列化
|
||||||
class ResourceDict(BaseModel):
|
class ResourceDict(BaseModel):
|
||||||
id: str = Field(description="Resource ID")
|
id: str = Field(description="Resource ID")
|
||||||
@@ -529,6 +597,7 @@ class ResourceTreeSet(object):
|
|||||||
plr_resource = sub_cls.deserialize(plr_dict, allow_marshal=True)
|
plr_resource = sub_cls.deserialize(plr_dict, allow_marshal=True)
|
||||||
from pylabrobot.resources import Coordinate
|
from pylabrobot.resources import Coordinate
|
||||||
from pylabrobot.serializer import deserialize
|
from pylabrobot.serializer import deserialize
|
||||||
|
|
||||||
location = cast(Coordinate, deserialize(plr_dict["location"]))
|
location = cast(Coordinate, deserialize(plr_dict["location"]))
|
||||||
plr_resource.location = location
|
plr_resource.location = location
|
||||||
plr_resource.load_all_state(all_states)
|
plr_resource.load_all_state(all_states)
|
||||||
|
|||||||
@@ -44,8 +44,7 @@ def ros2_device_node(
|
|||||||
# 从属性中自动发现可发布状态
|
# 从属性中自动发现可发布状态
|
||||||
if status_types is None:
|
if status_types is None:
|
||||||
status_types = {}
|
status_types = {}
|
||||||
if device_config is None:
|
assert device_config is not None, "device_config cannot be None"
|
||||||
raise ValueError("device_config cannot be None")
|
|
||||||
if action_value_mappings is None:
|
if action_value_mappings is None:
|
||||||
action_value_mappings = {}
|
action_value_mappings = {}
|
||||||
if hardware_interface is None:
|
if hardware_interface is None:
|
||||||
|
|||||||
@@ -4,8 +4,20 @@ import json
|
|||||||
import threading
|
import threading
|
||||||
import time
|
import time
|
||||||
import traceback
|
import traceback
|
||||||
from typing import get_type_hints, TypeVar, Generic, Dict, Any, Type, TypedDict, Optional, List, TYPE_CHECKING, Union, \
|
from typing import (
|
||||||
Tuple
|
get_type_hints,
|
||||||
|
TypeVar,
|
||||||
|
Generic,
|
||||||
|
Dict,
|
||||||
|
Any,
|
||||||
|
Type,
|
||||||
|
TypedDict,
|
||||||
|
Optional,
|
||||||
|
List,
|
||||||
|
TYPE_CHECKING,
|
||||||
|
Union,
|
||||||
|
Tuple,
|
||||||
|
)
|
||||||
|
|
||||||
from concurrent.futures import ThreadPoolExecutor
|
from concurrent.futures import ThreadPoolExecutor
|
||||||
import asyncio
|
import asyncio
|
||||||
@@ -48,6 +60,9 @@ from unilabos.resources.resource_tracker import (
|
|||||||
ResourceTreeSet,
|
ResourceTreeSet,
|
||||||
ResourceTreeInstance,
|
ResourceTreeInstance,
|
||||||
ResourceDictInstance,
|
ResourceDictInstance,
|
||||||
|
EXTRA_SAMPLE_UUID,
|
||||||
|
PARAM_SAMPLE_UUIDS,
|
||||||
|
JSON_UNILABOS_PARAM,
|
||||||
)
|
)
|
||||||
from unilabos.ros.utils.driver_creator import WorkstationNodeCreator, PyLabRobotCreator, DeviceClassCreator
|
from unilabos.ros.utils.driver_creator import WorkstationNodeCreator, PyLabRobotCreator, DeviceClassCreator
|
||||||
from rclpy.task import Task, Future
|
from rclpy.task import Task, Future
|
||||||
@@ -131,7 +146,7 @@ def init_wrapper(
|
|||||||
device_id: str,
|
device_id: str,
|
||||||
device_uuid: str,
|
device_uuid: str,
|
||||||
driver_class: type[T],
|
driver_class: type[T],
|
||||||
device_config: ResourceTreeInstance,
|
device_config: ResourceDictInstance,
|
||||||
status_types: Dict[str, Any],
|
status_types: Dict[str, Any],
|
||||||
action_value_mappings: Dict[str, Any],
|
action_value_mappings: Dict[str, Any],
|
||||||
hardware_interface: Dict[str, Any],
|
hardware_interface: Dict[str, Any],
|
||||||
@@ -216,14 +231,15 @@ class PropertyPublisher:
|
|||||||
|
|
||||||
def publish_property(self):
|
def publish_property(self):
|
||||||
try:
|
try:
|
||||||
self.node.lab_logger().trace(f"【.publish_property】开始发布属性: {self.name}")
|
# self.node.lab_logger().trace(f"【.publish_property】开始发布属性: {self.name}")
|
||||||
value = self.get_property()
|
value = self.get_property()
|
||||||
if self.print_publish:
|
if self.print_publish:
|
||||||
self.node.lab_logger().trace(f"【.publish_property】发布 {self.msg_type}: {value}")
|
pass
|
||||||
|
# self.node.lab_logger().trace(f"【.publish_property】发布 {self.msg_type}: {value}")
|
||||||
if value is not None:
|
if value is not None:
|
||||||
msg = convert_to_ros_msg(self.msg_type, value)
|
msg = convert_to_ros_msg(self.msg_type, value)
|
||||||
self.publisher_.publish(msg)
|
self.publisher_.publish(msg)
|
||||||
self.node.lab_logger().trace(f"【.publish_property】属性 {self.name} 发布成功")
|
# self.node.lab_logger().trace(f"【.publish_property】属性 {self.name} 发布成功")
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
self.node.lab_logger().error(
|
self.node.lab_logger().error(
|
||||||
f"【.publish_property】发布属性 {self.publisher_.topic} 出错: {str(e)}\n{traceback.format_exc()}"
|
f"【.publish_property】发布属性 {self.publisher_.topic} 出错: {str(e)}\n{traceback.format_exc()}"
|
||||||
@@ -263,6 +279,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
self,
|
self,
|
||||||
driver_instance: T,
|
driver_instance: T,
|
||||||
device_id: str,
|
device_id: str,
|
||||||
|
registry_name: str,
|
||||||
device_uuid: str,
|
device_uuid: str,
|
||||||
status_types: Dict[str, Any],
|
status_types: Dict[str, Any],
|
||||||
action_value_mappings: Dict[str, Any],
|
action_value_mappings: Dict[str, Any],
|
||||||
@@ -284,6 +301,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
"""
|
"""
|
||||||
self.driver_instance = driver_instance
|
self.driver_instance = driver_instance
|
||||||
self.device_id = device_id
|
self.device_id = device_id
|
||||||
|
self.registry_name = registry_name
|
||||||
self.uuid = device_uuid
|
self.uuid = device_uuid
|
||||||
self.publish_high_frequency = False
|
self.publish_high_frequency = False
|
||||||
self.callback_group = ReentrantCallbackGroup()
|
self.callback_group = ReentrantCallbackGroup()
|
||||||
@@ -361,6 +379,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
from pylabrobot.resources.deck import Deck
|
from pylabrobot.resources.deck import Deck
|
||||||
from pylabrobot.resources import Coordinate
|
from pylabrobot.resources import Coordinate
|
||||||
from pylabrobot.resources import Plate
|
from pylabrobot.resources import Plate
|
||||||
|
|
||||||
# 物料传输到对应的node节点
|
# 物料传输到对应的node节点
|
||||||
client = self._resource_clients["c2s_update_resource_tree"]
|
client = self._resource_clients["c2s_update_resource_tree"]
|
||||||
request = SerialCommand.Request()
|
request = SerialCommand.Request()
|
||||||
@@ -388,33 +407,29 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
rts: ResourceTreeSet = ResourceTreeSet.from_raw_dict_list(input_resources)
|
rts: ResourceTreeSet = ResourceTreeSet.from_raw_dict_list(input_resources)
|
||||||
parent_resource = None
|
parent_resource = None
|
||||||
if bind_parent_id != self.node_name:
|
if bind_parent_id != self.node_name:
|
||||||
parent_resource = self.resource_tracker.figure_resource(
|
parent_resource = self.resource_tracker.figure_resource({"name": bind_parent_id})
|
||||||
{"name": bind_parent_id}
|
|
||||||
)
|
|
||||||
for r in rts.root_nodes:
|
for r in rts.root_nodes:
|
||||||
# noinspection PyUnresolvedReferences
|
# noinspection PyUnresolvedReferences
|
||||||
r.res_content.parent_uuid = parent_resource.unilabos_uuid
|
r.res_content.parent_uuid = parent_resource.unilabos_uuid
|
||||||
else:
|
else:
|
||||||
for r in rts.root_nodes:
|
for r in rts.root_nodes:
|
||||||
r.res_content.parent_uuid = self.uuid
|
r.res_content.parent_uuid = self.uuid
|
||||||
|
rts_plr_instances = rts.to_plr_resources()
|
||||||
if len(LIQUID_INPUT_SLOT) and LIQUID_INPUT_SLOT[0] == -1 and len(rts.root_nodes) == 1 and isinstance(rts.root_nodes[0], RegularContainer):
|
if len(rts.root_nodes) == 1 and isinstance(rts_plr_instances[0], RegularContainer):
|
||||||
# noinspection PyTypeChecker
|
# noinspection PyTypeChecker
|
||||||
container_instance: RegularContainer = rts.root_nodes[0]
|
container_instance: RegularContainer = rts_plr_instances[0]
|
||||||
found_resources = self.resource_tracker.figure_resource(
|
found_resources = self.resource_tracker.figure_resource(
|
||||||
{"id": container_instance.name}, try_mode=True
|
{"name": container_instance.name}, try_mode=True
|
||||||
)
|
)
|
||||||
if not len(found_resources):
|
if not len(found_resources):
|
||||||
self.resource_tracker.add_resource(container_instance)
|
self.resource_tracker.add_resource(container_instance)
|
||||||
logger.info(f"添加物料{container_instance.name}到资源跟踪器")
|
logger.info(f"添加物料{container_instance.name}到资源跟踪器")
|
||||||
else:
|
else:
|
||||||
assert (
|
assert len(found_resources) == 1, f"找到多个同名物料: {container_instance.name}, 请检查物料系统"
|
||||||
len(found_resources) == 1
|
|
||||||
), f"找到多个同名物料: {container_instance.name}, 请检查物料系统"
|
|
||||||
found_resource = found_resources[0]
|
found_resource = found_resources[0]
|
||||||
if isinstance(found_resource, RegularContainer):
|
if isinstance(found_resource, RegularContainer):
|
||||||
logger.info(f"更新物料{container_instance.name}的数据{found_resource.state}")
|
logger.info(f"更新物料{container_instance.name}的数据{found_resource.state}")
|
||||||
found_resource.state.update(json.loads(container_instance.state))
|
found_resource.state.update(container_instance.state)
|
||||||
elif isinstance(found_resource, dict):
|
elif isinstance(found_resource, dict):
|
||||||
raise ValueError("已不支持 字典 版本的RegularContainer")
|
raise ValueError("已不支持 字典 版本的RegularContainer")
|
||||||
else:
|
else:
|
||||||
@@ -422,14 +437,16 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
f"更新物料{container_instance.name}出现不支持的数据类型{type(found_resource)} {found_resource}"
|
f"更新物料{container_instance.name}出现不支持的数据类型{type(found_resource)} {found_resource}"
|
||||||
)
|
)
|
||||||
# noinspection PyUnresolvedReferences
|
# noinspection PyUnresolvedReferences
|
||||||
request.command = json.dumps({
|
request.command = json.dumps(
|
||||||
"action": "add",
|
{
|
||||||
"data": {
|
"action": "add",
|
||||||
"data": rts.dump(),
|
"data": {
|
||||||
"mount_uuid": parent_resource.unilabos_uuid if parent_resource is not None else "",
|
"data": rts.dump(),
|
||||||
"first_add": False,
|
"mount_uuid": parent_resource.unilabos_uuid if parent_resource is not None else self.uuid,
|
||||||
},
|
"first_add": False,
|
||||||
})
|
},
|
||||||
|
}
|
||||||
|
)
|
||||||
tree_response: SerialCommand.Response = await client.call_async(request)
|
tree_response: SerialCommand.Response = await client.call_async(request)
|
||||||
uuid_maps = json.loads(tree_response.response)
|
uuid_maps = json.loads(tree_response.response)
|
||||||
plr_instances = rts.to_plr_resources()
|
plr_instances = rts.to_plr_resources()
|
||||||
@@ -443,7 +460,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
}
|
}
|
||||||
res.response = json.dumps(final_response)
|
res.response = json.dumps(final_response)
|
||||||
# 如果driver自己就有assign的方法,那就使用driver自己的assign方法
|
# 如果driver自己就有assign的方法,那就使用driver自己的assign方法
|
||||||
if hasattr(self.driver_instance, "create_resource"):
|
if hasattr(self.driver_instance, "create_resource") and self.node_name != "host_node":
|
||||||
create_resource_func = getattr(self.driver_instance, "create_resource")
|
create_resource_func = getattr(self.driver_instance, "create_resource")
|
||||||
try:
|
try:
|
||||||
ret = create_resource_func(
|
ret = create_resource_func(
|
||||||
@@ -471,7 +488,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
if len(ADD_LIQUID_TYPE) == 1 and len(LIQUID_VOLUME) == 1 and len(LIQUID_INPUT_SLOT) > 1:
|
if len(ADD_LIQUID_TYPE) == 1 and len(LIQUID_VOLUME) == 1 and len(LIQUID_INPUT_SLOT) > 1:
|
||||||
ADD_LIQUID_TYPE = ADD_LIQUID_TYPE * len(LIQUID_INPUT_SLOT)
|
ADD_LIQUID_TYPE = ADD_LIQUID_TYPE * len(LIQUID_INPUT_SLOT)
|
||||||
LIQUID_VOLUME = LIQUID_VOLUME * len(LIQUID_INPUT_SLOT)
|
LIQUID_VOLUME = LIQUID_VOLUME * len(LIQUID_INPUT_SLOT)
|
||||||
self.lab_logger().warning(f"增加液体资源时,数量为1,自动补全为 {len(LIQUID_INPUT_SLOT)} 个")
|
self.lab_logger().warning(
|
||||||
|
f"增加液体资源时,数量为1,自动补全为 {len(LIQUID_INPUT_SLOT)} 个"
|
||||||
|
)
|
||||||
for liquid_type, liquid_volume, liquid_input_slot in zip(
|
for liquid_type, liquid_volume, liquid_input_slot in zip(
|
||||||
ADD_LIQUID_TYPE, LIQUID_VOLUME, LIQUID_INPUT_SLOT
|
ADD_LIQUID_TYPE, LIQUID_VOLUME, LIQUID_INPUT_SLOT
|
||||||
):
|
):
|
||||||
@@ -490,9 +509,15 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
input_wells = []
|
input_wells = []
|
||||||
for r in LIQUID_INPUT_SLOT:
|
for r in LIQUID_INPUT_SLOT:
|
||||||
input_wells.append(plr_instance.children[r])
|
input_wells.append(plr_instance.children[r])
|
||||||
final_response["liquid_input_resource_tree"] = ResourceTreeSet.from_plr_resources(input_wells).dump()
|
final_response["liquid_input_resource_tree"] = ResourceTreeSet.from_plr_resources(
|
||||||
|
input_wells
|
||||||
|
).dump()
|
||||||
res.response = json.dumps(final_response)
|
res.response = json.dumps(final_response)
|
||||||
if issubclass(parent_resource.__class__, Deck) and hasattr(parent_resource, "assign_child_at_slot") and "slot" in other_calling_param:
|
if (
|
||||||
|
issubclass(parent_resource.__class__, Deck)
|
||||||
|
and hasattr(parent_resource, "assign_child_at_slot")
|
||||||
|
and "slot" in other_calling_param
|
||||||
|
):
|
||||||
other_calling_param["slot"] = int(other_calling_param["slot"])
|
other_calling_param["slot"] = int(other_calling_param["slot"])
|
||||||
parent_resource.assign_child_at_slot(plr_instance, **other_calling_param)
|
parent_resource.assign_child_at_slot(plr_instance, **other_calling_param)
|
||||||
else:
|
else:
|
||||||
@@ -507,14 +532,16 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
rts_with_parent = ResourceTreeSet.from_plr_resources([parent_resource])
|
rts_with_parent = ResourceTreeSet.from_plr_resources([parent_resource])
|
||||||
if rts_with_parent.root_nodes[0].res_content.uuid_parent is None:
|
if rts_with_parent.root_nodes[0].res_content.uuid_parent is None:
|
||||||
rts_with_parent.root_nodes[0].res_content.parent_uuid = self.uuid
|
rts_with_parent.root_nodes[0].res_content.parent_uuid = self.uuid
|
||||||
request.command = json.dumps({
|
request.command = json.dumps(
|
||||||
"action": "add",
|
{
|
||||||
"data": {
|
"action": "add",
|
||||||
"data": rts_with_parent.dump(),
|
"data": {
|
||||||
"mount_uuid": rts_with_parent.root_nodes[0].res_content.uuid_parent,
|
"data": rts_with_parent.dump(),
|
||||||
"first_add": False,
|
"mount_uuid": rts_with_parent.root_nodes[0].res_content.uuid_parent,
|
||||||
},
|
"first_add": False,
|
||||||
})
|
},
|
||||||
|
}
|
||||||
|
)
|
||||||
tree_response: SerialCommand.Response = await client.call_async(request)
|
tree_response: SerialCommand.Response = await client.call_async(request)
|
||||||
uuid_maps = json.loads(tree_response.response)
|
uuid_maps = json.loads(tree_response.response)
|
||||||
self.resource_tracker.loop_update_uuid(input_resources, uuid_maps)
|
self.resource_tracker.loop_update_uuid(input_resources, uuid_maps)
|
||||||
@@ -811,7 +838,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
}
|
}
|
||||||
|
|
||||||
def _handle_update(
|
def _handle_update(
|
||||||
plr_resources: List[Union[ResourcePLR, ResourceDictInstance]], tree_set: ResourceTreeSet, additional_add_params: Dict[str, Any]
|
plr_resources: List[Union[ResourcePLR, ResourceDictInstance]],
|
||||||
|
tree_set: ResourceTreeSet,
|
||||||
|
additional_add_params: Dict[str, Any],
|
||||||
) -> Tuple[Dict[str, Any], List[ResourcePLR]]:
|
) -> Tuple[Dict[str, Any], List[ResourcePLR]]:
|
||||||
"""
|
"""
|
||||||
处理资源更新操作的内部函数
|
处理资源更新操作的内部函数
|
||||||
@@ -836,7 +865,10 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
original_parent_resource = original_instance.parent
|
original_parent_resource = original_instance.parent
|
||||||
original_parent_resource_uuid = getattr(original_parent_resource, "unilabos_uuid", None)
|
original_parent_resource_uuid = getattr(original_parent_resource, "unilabos_uuid", None)
|
||||||
target_parent_resource_uuid = tree.root_node.res_content.uuid_parent
|
target_parent_resource_uuid = tree.root_node.res_content.uuid_parent
|
||||||
not_same_parent = original_parent_resource_uuid != target_parent_resource_uuid and original_parent_resource is not None
|
not_same_parent = (
|
||||||
|
original_parent_resource_uuid != target_parent_resource_uuid
|
||||||
|
and original_parent_resource is not None
|
||||||
|
)
|
||||||
old_name = original_instance.name
|
old_name = original_instance.name
|
||||||
new_name = plr_resource.name
|
new_name = plr_resource.name
|
||||||
parent_appended = False
|
parent_appended = False
|
||||||
@@ -872,8 +904,16 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
else:
|
else:
|
||||||
# 判断是否变更了resource_site,重新登记
|
# 判断是否变更了resource_site,重新登记
|
||||||
target_site = original_instance.unilabos_extra.get("update_resource_site")
|
target_site = original_instance.unilabos_extra.get("update_resource_site")
|
||||||
sites = original_instance.parent.sites if original_instance.parent is not None and hasattr(original_instance.parent, "sites") else None
|
sites = (
|
||||||
site_names = list(original_instance.parent._ordering.keys()) if original_instance.parent is not None and hasattr(original_instance.parent, "sites") else []
|
original_instance.parent.sites
|
||||||
|
if original_instance.parent is not None and hasattr(original_instance.parent, "sites")
|
||||||
|
else None
|
||||||
|
)
|
||||||
|
site_names = (
|
||||||
|
list(original_instance.parent._ordering.keys())
|
||||||
|
if original_instance.parent is not None and hasattr(original_instance.parent, "sites")
|
||||||
|
else []
|
||||||
|
)
|
||||||
if target_site is not None and sites is not None and site_names is not None:
|
if target_site is not None and sites is not None and site_names is not None:
|
||||||
site_index = sites.index(original_instance)
|
site_index = sites.index(original_instance)
|
||||||
site_name = site_names[site_index]
|
site_name = site_names[site_index]
|
||||||
@@ -910,9 +950,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
action = i.get("action") # remove, add, update
|
action = i.get("action") # remove, add, update
|
||||||
resources_uuid: List[str] = i.get("data") # 资源数据
|
resources_uuid: List[str] = i.get("data") # 资源数据
|
||||||
additional_add_params = i.get("additional_add_params", {}) # 额外参数
|
additional_add_params = i.get("additional_add_params", {}) # 额外参数
|
||||||
self.lab_logger().trace(
|
self.lab_logger().trace(f"[资源同步] 处理 {action}, " f"resources count: {len(resources_uuid)}")
|
||||||
f"[资源同步] 处理 {action}, " f"resources count: {len(resources_uuid)}"
|
|
||||||
)
|
|
||||||
tree_set = None
|
tree_set = None
|
||||||
if action in ["add", "update"]:
|
if action in ["add", "update"]:
|
||||||
tree_set = await self.get_resource(
|
tree_set = await self.get_resource(
|
||||||
@@ -939,9 +977,13 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
tree.root_node.res_content.parent_uuid = self.uuid
|
tree.root_node.res_content.parent_uuid = self.uuid
|
||||||
r = SerialCommand.Request()
|
r = SerialCommand.Request()
|
||||||
r.command = json.dumps(
|
r.command = json.dumps(
|
||||||
{"data": {"data": new_tree_set.dump()}, "action": "update"}) # 和Update Resource一致
|
{"data": {"data": new_tree_set.dump()}, "action": "update"}
|
||||||
|
) # 和Update Resource一致
|
||||||
response: SerialCommand_Response = await self._resource_clients[
|
response: SerialCommand_Response = await self._resource_clients[
|
||||||
"c2s_update_resource_tree"].call_async(r) # type: ignore
|
"c2s_update_resource_tree"
|
||||||
|
].call_async(
|
||||||
|
r
|
||||||
|
) # type: ignore
|
||||||
self.lab_logger().info(f"确认资源云端 Add 结果: {response.response}")
|
self.lab_logger().info(f"确认资源云端 Add 结果: {response.response}")
|
||||||
results.append(result)
|
results.append(result)
|
||||||
elif action == "update":
|
elif action == "update":
|
||||||
@@ -961,9 +1003,13 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
tree.root_node.res_content.parent_uuid = self.uuid
|
tree.root_node.res_content.parent_uuid = self.uuid
|
||||||
r = SerialCommand.Request()
|
r = SerialCommand.Request()
|
||||||
r.command = json.dumps(
|
r.command = json.dumps(
|
||||||
{"data": {"data": new_tree_set.dump()}, "action": "update"}) # 和Update Resource一致
|
{"data": {"data": new_tree_set.dump()}, "action": "update"}
|
||||||
|
) # 和Update Resource一致
|
||||||
response: SerialCommand_Response = await self._resource_clients[
|
response: SerialCommand_Response = await self._resource_clients[
|
||||||
"c2s_update_resource_tree"].call_async(r) # type: ignore
|
"c2s_update_resource_tree"
|
||||||
|
].call_async(
|
||||||
|
r
|
||||||
|
) # type: ignore
|
||||||
self.lab_logger().info(f"确认资源云端 Update 结果: {response.response}")
|
self.lab_logger().info(f"确认资源云端 Update 结果: {response.response}")
|
||||||
results.append(result)
|
results.append(result)
|
||||||
elif action == "remove":
|
elif action == "remove":
|
||||||
@@ -1110,6 +1156,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
"machine_name": BasicConfig.machine_name,
|
"machine_name": BasicConfig.machine_name,
|
||||||
"type": "slave",
|
"type": "slave",
|
||||||
"edge_device_id": self.device_id,
|
"edge_device_id": self.device_id,
|
||||||
|
"registry_name": self.registry_name,
|
||||||
}
|
}
|
||||||
},
|
},
|
||||||
ensure_ascii=False,
|
ensure_ascii=False,
|
||||||
@@ -1333,7 +1380,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
resource_id=resource_data["id"], with_children=True
|
resource_id=resource_data["id"], with_children=True
|
||||||
)
|
)
|
||||||
if "sample_id" in resource_data:
|
if "sample_id" in resource_data:
|
||||||
plr_resource.unilabos_extra["sample_uuid"] = resource_data["sample_id"]
|
plr_resource.unilabos_extra[EXTRA_SAMPLE_UUID] = resource_data["sample_id"]
|
||||||
queried_resources[idx] = plr_resource
|
queried_resources[idx] = plr_resource
|
||||||
else:
|
else:
|
||||||
uuid_indices.append((idx, unilabos_uuid, resource_data))
|
uuid_indices.append((idx, unilabos_uuid, resource_data))
|
||||||
@@ -1346,7 +1393,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
for i, (idx, _, resource_data) in enumerate(uuid_indices):
|
for i, (idx, _, resource_data) in enumerate(uuid_indices):
|
||||||
plr_resource = plr_resources[i]
|
plr_resource = plr_resources[i]
|
||||||
if "sample_id" in resource_data:
|
if "sample_id" in resource_data:
|
||||||
plr_resource.unilabos_extra["sample_uuid"] = resource_data["sample_id"]
|
plr_resource.unilabos_extra[EXTRA_SAMPLE_UUID] = resource_data["sample_id"]
|
||||||
queried_resources[idx] = plr_resource
|
queried_resources[idx] = plr_resource
|
||||||
|
|
||||||
self.lab_logger().debug(f"资源查询结果: 共 {len(queried_resources)} 个资源")
|
self.lab_logger().debug(f"资源查询结果: 共 {len(queried_resources)} 个资源")
|
||||||
@@ -1354,7 +1401,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
# 通过资源跟踪器获取本地实例
|
# 通过资源跟踪器获取本地实例
|
||||||
final_resources = queried_resources if is_sequence else queried_resources[0]
|
final_resources = queried_resources if is_sequence else queried_resources[0]
|
||||||
if not is_sequence:
|
if not is_sequence:
|
||||||
plr = self.resource_tracker.figure_resource({"name": final_resources.name}, try_mode=False)
|
plr = self.resource_tracker.figure_resource(
|
||||||
|
{"name": final_resources.name}, try_mode=False
|
||||||
|
)
|
||||||
# 保留unilabos_extra
|
# 保留unilabos_extra
|
||||||
if hasattr(final_resources, "unilabos_extra") and hasattr(plr, "unilabos_extra"):
|
if hasattr(final_resources, "unilabos_extra") and hasattr(plr, "unilabos_extra"):
|
||||||
plr.unilabos_extra = getattr(final_resources, "unilabos_extra", {}).copy()
|
plr.unilabos_extra = getattr(final_resources, "unilabos_extra", {}).copy()
|
||||||
@@ -1393,8 +1442,12 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
execution_success = True
|
execution_success = True
|
||||||
except Exception as _:
|
except Exception as _:
|
||||||
execution_error = traceback.format_exc()
|
execution_error = traceback.format_exc()
|
||||||
error(f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{str(action_kwargs)[:1000]}")
|
error(
|
||||||
trace(f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}")
|
f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{str(action_kwargs)[:1000]}"
|
||||||
|
)
|
||||||
|
trace(
|
||||||
|
f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}"
|
||||||
|
)
|
||||||
|
|
||||||
future = ROS2DeviceNode.run_async_func(ACTION, trace_error=False, **action_kwargs)
|
future = ROS2DeviceNode.run_async_func(ACTION, trace_error=False, **action_kwargs)
|
||||||
future.add_done_callback(_handle_future_exception)
|
future.add_done_callback(_handle_future_exception)
|
||||||
@@ -1414,9 +1467,11 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
except Exception as _:
|
except Exception as _:
|
||||||
execution_error = traceback.format_exc()
|
execution_error = traceback.format_exc()
|
||||||
error(
|
error(
|
||||||
f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{str(action_kwargs)[:1000]}")
|
f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{str(action_kwargs)[:1000]}"
|
||||||
|
)
|
||||||
trace(
|
trace(
|
||||||
f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}")
|
f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}"
|
||||||
|
)
|
||||||
|
|
||||||
future.add_done_callback(_handle_future_exception)
|
future.add_done_callback(_handle_future_exception)
|
||||||
|
|
||||||
@@ -1483,11 +1538,18 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
if isinstance(rs, list):
|
if isinstance(rs, list):
|
||||||
for r in rs:
|
for r in rs:
|
||||||
res = self.resource_tracker.parent_resource(r) # 获取 resource 对象
|
res = self.resource_tracker.parent_resource(r) # 获取 resource 对象
|
||||||
|
if res is None:
|
||||||
|
res = rs
|
||||||
|
if id(res) not in seen:
|
||||||
|
seen.add(id(res))
|
||||||
|
unique_resources.append(res)
|
||||||
else:
|
else:
|
||||||
res = self.resource_tracker.parent_resource(rs)
|
res = self.resource_tracker.parent_resource(rs)
|
||||||
if id(res) not in seen:
|
if res is None:
|
||||||
seen.add(id(res))
|
res = rs
|
||||||
unique_resources.append(res)
|
if id(res) not in seen:
|
||||||
|
seen.add(id(res))
|
||||||
|
unique_resources.append(res)
|
||||||
|
|
||||||
# 使用新的资源树接口
|
# 使用新的资源树接口
|
||||||
if unique_resources:
|
if unique_resources:
|
||||||
@@ -1539,20 +1601,37 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
try:
|
try:
|
||||||
function_name = target["function_name"]
|
function_name = target["function_name"]
|
||||||
function_args = target["function_args"]
|
function_args = target["function_args"]
|
||||||
|
# 获取 unilabos 系统参数
|
||||||
|
unilabos_param: Dict[str, Any] = target[JSON_UNILABOS_PARAM]
|
||||||
|
|
||||||
assert isinstance(function_args, dict), "执行动作时JSON必须为dict类型\n原JSON: {string}"
|
assert isinstance(function_args, dict), "执行动作时JSON必须为dict类型\n原JSON: {string}"
|
||||||
function = getattr(self.driver_instance, function_name)
|
function = getattr(self.driver_instance, function_name)
|
||||||
assert callable(
|
assert callable(
|
||||||
function
|
function
|
||||||
), f"执行动作时JSON中的function_name对应的函数不可调用: {function_name}\n原JSON: {string}"
|
), f"执行动作时JSON中的function_name对应的函数不可调用: {function_name}\n原JSON: {string}"
|
||||||
|
|
||||||
# 处理 ResourceSlot 类型参数
|
# 处理参数(包含 unilabos 系统参数如 sample_uuids)
|
||||||
args_list = default_manager._analyze_method_signature(function)["args"]
|
args_list = default_manager._analyze_method_signature(function, skip_unilabos_params=False)["args"]
|
||||||
for arg in args_list:
|
for arg in args_list:
|
||||||
arg_name = arg["name"]
|
arg_name = arg["name"]
|
||||||
arg_type = arg["type"]
|
arg_type = arg["type"]
|
||||||
|
|
||||||
# 跳过不在 function_args 中的参数
|
# 跳过不在 function_args 中的参数
|
||||||
if arg_name not in function_args:
|
if arg_name not in function_args:
|
||||||
|
# 处理 sample_uuids 参数注入
|
||||||
|
if arg_name == PARAM_SAMPLE_UUIDS:
|
||||||
|
raw_sample_uuids = unilabos_param.get(PARAM_SAMPLE_UUIDS, {})
|
||||||
|
# 将 material uuid 转换为 resource 实例
|
||||||
|
# key: sample_uuid, value: material_uuid -> resource 实例
|
||||||
|
resolved_sample_uuids: Dict[str, Any] = {}
|
||||||
|
for sample_uuid, material_uuid in raw_sample_uuids.items():
|
||||||
|
if material_uuid and self.resource_tracker:
|
||||||
|
resource = self.resource_tracker.uuid_to_resources.get(material_uuid)
|
||||||
|
resolved_sample_uuids[sample_uuid] = resource if resource else material_uuid
|
||||||
|
else:
|
||||||
|
resolved_sample_uuids[sample_uuid] = material_uuid
|
||||||
|
function_args[PARAM_SAMPLE_UUIDS] = resolved_sample_uuids
|
||||||
|
self.lab_logger().debug(f"[JsonCommand] 注入 {PARAM_SAMPLE_UUIDS}: {resolved_sample_uuids}")
|
||||||
continue
|
continue
|
||||||
|
|
||||||
# 处理单个 ResourceSlot
|
# 处理单个 ResourceSlot
|
||||||
@@ -1582,6 +1661,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
)
|
)
|
||||||
raise JsonCommandInitError(f"ResourceSlot列表参数转换失败: {arg_name}")
|
raise JsonCommandInitError(f"ResourceSlot列表参数转换失败: {arg_name}")
|
||||||
|
|
||||||
|
# todo: 默认反报送
|
||||||
return function(**function_args)
|
return function(**function_args)
|
||||||
except KeyError as ex:
|
except KeyError as ex:
|
||||||
raise JsonCommandInitError(
|
raise JsonCommandInitError(
|
||||||
@@ -1601,21 +1681,23 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
raise ValueError("至少需要提供一个 UUID")
|
raise ValueError("至少需要提供一个 UUID")
|
||||||
|
|
||||||
uuids_list = list(uuids)
|
uuids_list = list(uuids)
|
||||||
future = self._resource_clients["c2s_update_resource_tree"].call_async(SerialCommand.Request(
|
future = self._resource_clients["c2s_update_resource_tree"].call_async(
|
||||||
command=json.dumps(
|
SerialCommand.Request(
|
||||||
{
|
command=json.dumps(
|
||||||
"data": {"data": uuids_list, "with_children": True},
|
{
|
||||||
"action": "get",
|
"data": {"data": uuids_list, "with_children": True},
|
||||||
}
|
"action": "get",
|
||||||
|
}
|
||||||
|
)
|
||||||
)
|
)
|
||||||
))
|
)
|
||||||
|
|
||||||
# 等待结果(使用while循环,每次sleep 0.05秒,最多等待30秒)
|
# 等待结果(使用while循环,每次sleep 0.05秒,最多等待30秒)
|
||||||
timeout = 30.0
|
timeout = 30.0
|
||||||
elapsed = 0.0
|
elapsed = 0.0
|
||||||
while not future.done() and elapsed < timeout:
|
while not future.done() and elapsed < timeout:
|
||||||
time.sleep(0.05)
|
time.sleep(0.02)
|
||||||
elapsed += 0.05
|
elapsed += 0.02
|
||||||
|
|
||||||
if not future.done():
|
if not future.done():
|
||||||
raise Exception(f"资源查询超时: {uuids_list}")
|
raise Exception(f"资源查询超时: {uuids_list}")
|
||||||
@@ -1666,6 +1748,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
try:
|
try:
|
||||||
function_name = target["function_name"]
|
function_name = target["function_name"]
|
||||||
function_args = target["function_args"]
|
function_args = target["function_args"]
|
||||||
|
# 获取 unilabos 系统参数
|
||||||
|
unilabos_param: Dict[str, Any] = target.get(JSON_UNILABOS_PARAM, {})
|
||||||
|
|
||||||
assert isinstance(function_args, dict), "执行动作时JSON必须为dict类型\n原JSON: {string}"
|
assert isinstance(function_args, dict), "执行动作时JSON必须为dict类型\n原JSON: {string}"
|
||||||
function = getattr(self.driver_instance, function_name)
|
function = getattr(self.driver_instance, function_name)
|
||||||
assert callable(
|
assert callable(
|
||||||
@@ -1675,14 +1760,30 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
|||||||
function
|
function
|
||||||
), f"执行动作时JSON中的function并非异步: {function_name}\n原JSON: {string}"
|
), f"执行动作时JSON中的function并非异步: {function_name}\n原JSON: {string}"
|
||||||
|
|
||||||
# 处理 ResourceSlot 类型参数
|
# 处理参数(包含 unilabos 系统参数如 sample_uuids)
|
||||||
args_list = default_manager._analyze_method_signature(function)["args"]
|
args_list = default_manager._analyze_method_signature(function, skip_unilabos_params=False)["args"]
|
||||||
for arg in args_list:
|
for arg in args_list:
|
||||||
arg_name = arg["name"]
|
arg_name = arg["name"]
|
||||||
arg_type = arg["type"]
|
arg_type = arg["type"]
|
||||||
|
|
||||||
# 跳过不在 function_args 中的参数
|
# 跳过不在 function_args 中的参数
|
||||||
if arg_name not in function_args:
|
if arg_name not in function_args:
|
||||||
|
# 处理 sample_uuids 参数注入
|
||||||
|
if arg_name == PARAM_SAMPLE_UUIDS:
|
||||||
|
raw_sample_uuids = unilabos_param.get(PARAM_SAMPLE_UUIDS, {})
|
||||||
|
# 将 material uuid 转换为 resource 实例
|
||||||
|
# key: sample_uuid, value: material_uuid -> resource 实例
|
||||||
|
resolved_sample_uuids: Dict[str, Any] = {}
|
||||||
|
for sample_uuid, material_uuid in raw_sample_uuids.items():
|
||||||
|
if material_uuid and self.resource_tracker:
|
||||||
|
resource = self.resource_tracker.uuid_to_resources.get(material_uuid)
|
||||||
|
resolved_sample_uuids[sample_uuid] = resource if resource else material_uuid
|
||||||
|
else:
|
||||||
|
resolved_sample_uuids[sample_uuid] = material_uuid
|
||||||
|
function_args[PARAM_SAMPLE_UUIDS] = resolved_sample_uuids
|
||||||
|
self.lab_logger().debug(
|
||||||
|
f"[JsonCommandAsync] 注入 {PARAM_SAMPLE_UUIDS}: {resolved_sample_uuids}"
|
||||||
|
)
|
||||||
continue
|
continue
|
||||||
|
|
||||||
# 处理单个 ResourceSlot
|
# 处理单个 ResourceSlot
|
||||||
@@ -1907,6 +2008,7 @@ class ROS2DeviceNode:
|
|||||||
|
|
||||||
if driver_is_ros:
|
if driver_is_ros:
|
||||||
driver_params["device_id"] = device_id
|
driver_params["device_id"] = device_id
|
||||||
|
driver_params["registry_name"] = device_config.res_content.klass
|
||||||
driver_params["resource_tracker"] = self.resource_tracker
|
driver_params["resource_tracker"] = self.resource_tracker
|
||||||
self._driver_instance = self._driver_creator.create_instance(driver_params)
|
self._driver_instance = self._driver_creator.create_instance(driver_params)
|
||||||
if self._driver_instance is None:
|
if self._driver_instance is None:
|
||||||
@@ -1924,6 +2026,7 @@ class ROS2DeviceNode:
|
|||||||
children=children,
|
children=children,
|
||||||
driver_instance=self._driver_instance, # type: ignore
|
driver_instance=self._driver_instance, # type: ignore
|
||||||
device_id=device_id,
|
device_id=device_id,
|
||||||
|
registry_name=device_config.res_content.klass,
|
||||||
device_uuid=device_uuid,
|
device_uuid=device_uuid,
|
||||||
status_types=status_types,
|
status_types=status_types,
|
||||||
action_value_mappings=action_value_mappings,
|
action_value_mappings=action_value_mappings,
|
||||||
@@ -1935,6 +2038,7 @@ class ROS2DeviceNode:
|
|||||||
self._ros_node = BaseROS2DeviceNode(
|
self._ros_node = BaseROS2DeviceNode(
|
||||||
driver_instance=self._driver_instance,
|
driver_instance=self._driver_instance,
|
||||||
device_id=device_id,
|
device_id=device_id,
|
||||||
|
registry_name=device_config.res_content.klass,
|
||||||
device_uuid=device_uuid,
|
device_uuid=device_uuid,
|
||||||
status_types=status_types,
|
status_types=status_types,
|
||||||
action_value_mappings=action_value_mappings,
|
action_value_mappings=action_value_mappings,
|
||||||
@@ -1943,6 +2047,7 @@ class ROS2DeviceNode:
|
|||||||
resource_tracker=self.resource_tracker,
|
resource_tracker=self.resource_tracker,
|
||||||
)
|
)
|
||||||
self._ros_node: BaseROS2DeviceNode
|
self._ros_node: BaseROS2DeviceNode
|
||||||
|
# 将注册表类型名传递给BaseROS2DeviceNode,用于slave上报
|
||||||
self._ros_node.lab_logger().info(f"初始化完成 {self._ros_node.uuid} {self.driver_is_ros}")
|
self._ros_node.lab_logger().info(f"初始化完成 {self._ros_node.uuid} {self.driver_is_ros}")
|
||||||
self.driver_instance._ros_node = self._ros_node # type: ignore
|
self.driver_instance._ros_node = self._ros_node # type: ignore
|
||||||
self.driver_instance._execute_driver_command = self._ros_node._execute_driver_command # type: ignore
|
self.driver_instance._execute_driver_command = self._ros_node._execute_driver_command # type: ignore
|
||||||
@@ -1960,7 +2065,9 @@ class ROS2DeviceNode:
|
|||||||
asyncio.set_event_loop(loop)
|
asyncio.set_event_loop(loop)
|
||||||
loop.run_forever()
|
loop.run_forever()
|
||||||
|
|
||||||
ROS2DeviceNode._asyncio_loop_thread = threading.Thread(target=run_event_loop, daemon=True, name="ROS2DeviceNode")
|
ROS2DeviceNode._asyncio_loop_thread = threading.Thread(
|
||||||
|
target=run_event_loop, daemon=True, name="ROS2DeviceNode"
|
||||||
|
)
|
||||||
ROS2DeviceNode._asyncio_loop_thread.start()
|
ROS2DeviceNode._asyncio_loop_thread.start()
|
||||||
logger.info(f"循环线程已启动")
|
logger.info(f"循环线程已启动")
|
||||||
|
|
||||||
|
|||||||
@@ -6,12 +6,13 @@ from cv_bridge import CvBridge
|
|||||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, DeviceNodeResourceTracker
|
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, DeviceNodeResourceTracker
|
||||||
|
|
||||||
class VideoPublisher(BaseROS2DeviceNode):
|
class VideoPublisher(BaseROS2DeviceNode):
|
||||||
def __init__(self, device_id='video_publisher', device_uuid='', camera_index=0, period: float = 0.1, resource_tracker: DeviceNodeResourceTracker = None):
|
def __init__(self, device_id='video_publisher', registry_name="", device_uuid='', camera_index=0, period: float = 0.1, resource_tracker: DeviceNodeResourceTracker = None):
|
||||||
# 初始化BaseROS2DeviceNode,使用自身作为driver_instance
|
# 初始化BaseROS2DeviceNode,使用自身作为driver_instance
|
||||||
BaseROS2DeviceNode.__init__(
|
BaseROS2DeviceNode.__init__(
|
||||||
self,
|
self,
|
||||||
driver_instance=self,
|
driver_instance=self,
|
||||||
device_id=device_id,
|
device_id=device_id,
|
||||||
|
registry_name=registry_name,
|
||||||
device_uuid=device_uuid,
|
device_uuid=device_uuid,
|
||||||
status_types={},
|
status_types={},
|
||||||
action_value_mappings={},
|
action_value_mappings={},
|
||||||
|
|||||||
@@ -10,6 +10,7 @@ class ControllerNode(BaseROS2DeviceNode):
|
|||||||
def __init__(
|
def __init__(
|
||||||
self,
|
self,
|
||||||
device_id: str,
|
device_id: str,
|
||||||
|
registry_name: str,
|
||||||
controller_func: Callable,
|
controller_func: Callable,
|
||||||
update_rate: float,
|
update_rate: float,
|
||||||
inputs: Dict[str, Dict[str, type | str]],
|
inputs: Dict[str, Dict[str, type | str]],
|
||||||
@@ -51,6 +52,7 @@ class ControllerNode(BaseROS2DeviceNode):
|
|||||||
self,
|
self,
|
||||||
driver_instance=self,
|
driver_instance=self,
|
||||||
device_id=device_id,
|
device_id=device_id,
|
||||||
|
registry_name=registry_name,
|
||||||
status_types=status_types,
|
status_types=status_types,
|
||||||
action_value_mappings=action_value_mappings,
|
action_value_mappings=action_value_mappings,
|
||||||
hardware_interface=hardware_interface,
|
hardware_interface=hardware_interface,
|
||||||
|
|||||||
@@ -1,17 +1,17 @@
|
|||||||
import collections
|
import collections
|
||||||
from dataclasses import dataclass, field
|
|
||||||
import json
|
import json
|
||||||
import threading
|
import threading
|
||||||
import time
|
import time
|
||||||
import traceback
|
import traceback
|
||||||
import uuid
|
import uuid
|
||||||
|
from dataclasses import dataclass, field
|
||||||
from typing import TYPE_CHECKING, Optional, Dict, Any, List, ClassVar, Set, Union
|
from typing import TYPE_CHECKING, Optional, Dict, Any, List, ClassVar, Set, Union
|
||||||
from typing_extensions import TypedDict
|
|
||||||
|
|
||||||
from action_msgs.msg import GoalStatus
|
from action_msgs.msg import GoalStatus
|
||||||
from geometry_msgs.msg import Point
|
from geometry_msgs.msg import Point
|
||||||
from rclpy.action import ActionClient, get_action_server_names_and_types_by_node
|
from rclpy.action import ActionClient, get_action_server_names_and_types_by_node
|
||||||
from rclpy.service import Service
|
from rclpy.service import Service
|
||||||
|
from typing_extensions import TypedDict
|
||||||
from unilabos_msgs.msg import Resource # type: ignore
|
from unilabos_msgs.msg import Resource # type: ignore
|
||||||
from unilabos_msgs.srv import (
|
from unilabos_msgs.srv import (
|
||||||
ResourceAdd,
|
ResourceAdd,
|
||||||
@@ -23,10 +23,20 @@ from unilabos_msgs.srv import (
|
|||||||
from unilabos_msgs.srv._serial_command import SerialCommand_Request, SerialCommand_Response
|
from unilabos_msgs.srv._serial_command import SerialCommand_Request, SerialCommand_Response
|
||||||
from unique_identifier_msgs.msg import UUID
|
from unique_identifier_msgs.msg import UUID
|
||||||
|
|
||||||
|
from unilabos.registry.placeholder_type import ResourceSlot, DeviceSlot
|
||||||
from unilabos.registry.registry import lab_registry
|
from unilabos.registry.registry import lab_registry
|
||||||
from unilabos.resources.container import RegularContainer
|
from unilabos.resources.container import RegularContainer
|
||||||
from unilabos.resources.graphio import initialize_resource
|
from unilabos.resources.graphio import initialize_resource
|
||||||
from unilabos.resources.registry import add_schema
|
from unilabos.resources.registry import add_schema
|
||||||
|
from unilabos.resources.resource_tracker import (
|
||||||
|
ResourceDict,
|
||||||
|
ResourceDictInstance,
|
||||||
|
ResourceTreeSet,
|
||||||
|
ResourceTreeInstance,
|
||||||
|
RETURN_UNILABOS_SAMPLES,
|
||||||
|
JSON_UNILABOS_PARAM,
|
||||||
|
PARAM_SAMPLE_UUIDS, SampleUUIDsType, LabSample,
|
||||||
|
)
|
||||||
from unilabos.ros.initialize_device import initialize_device_from_dict
|
from unilabos.ros.initialize_device import initialize_device_from_dict
|
||||||
from unilabos.ros.msgs.message_converter import (
|
from unilabos.ros.msgs.message_converter import (
|
||||||
get_msg_type,
|
get_msg_type,
|
||||||
@@ -37,17 +47,11 @@ from unilabos.ros.msgs.message_converter import (
|
|||||||
)
|
)
|
||||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, ROS2DeviceNode, DeviceNodeResourceTracker
|
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, ROS2DeviceNode, DeviceNodeResourceTracker
|
||||||
from unilabos.ros.nodes.presets.controller_node import ControllerNode
|
from unilabos.ros.nodes.presets.controller_node import ControllerNode
|
||||||
from unilabos.resources.resource_tracker import (
|
|
||||||
ResourceDict,
|
|
||||||
ResourceDictInstance,
|
|
||||||
ResourceTreeSet,
|
|
||||||
ResourceTreeInstance,
|
|
||||||
)
|
|
||||||
from unilabos.utils import logger
|
from unilabos.utils import logger
|
||||||
from unilabos.utils.exception import DeviceClassInvalid
|
from unilabos.utils.exception import DeviceClassInvalid
|
||||||
from unilabos.utils.log import warning
|
from unilabos.utils.log import warning
|
||||||
from unilabos.utils.type_check import serialize_result_info
|
from unilabos.utils.type_check import serialize_result_info
|
||||||
from unilabos.registry.placeholder_type import ResourceSlot, DeviceSlot
|
from unilabos.config.config import BasicConfig
|
||||||
|
|
||||||
if TYPE_CHECKING:
|
if TYPE_CHECKING:
|
||||||
from unilabos.app.ws_client import QueueItem
|
from unilabos.app.ws_client import QueueItem
|
||||||
@@ -60,7 +64,8 @@ class DeviceActionStatus:
|
|||||||
|
|
||||||
class TestResourceReturn(TypedDict):
|
class TestResourceReturn(TypedDict):
|
||||||
resources: List[List[ResourceDict]]
|
resources: List[List[ResourceDict]]
|
||||||
devices: List[DeviceSlot]
|
devices: List[Dict[str, Any]]
|
||||||
|
unilabos_samples: List[LabSample]
|
||||||
|
|
||||||
|
|
||||||
class TestLatencyReturn(TypedDict):
|
class TestLatencyReturn(TypedDict):
|
||||||
@@ -245,6 +250,7 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
self,
|
self,
|
||||||
driver_instance=self,
|
driver_instance=self,
|
||||||
device_id=device_id,
|
device_id=device_id,
|
||||||
|
registry_name="host_node",
|
||||||
device_uuid=host_node_dict["uuid"],
|
device_uuid=host_node_dict["uuid"],
|
||||||
status_types={},
|
status_types={},
|
||||||
action_value_mappings=lab_registry.device_type_registry["host_node"]["class"]["action_value_mappings"],
|
action_value_mappings=lab_registry.device_type_registry["host_node"]["class"]["action_value_mappings"],
|
||||||
@@ -299,7 +305,8 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
} # 用来存储多个ActionClient实例
|
} # 用来存储多个ActionClient实例
|
||||||
self._action_value_mappings: Dict[str, Dict] = (
|
self._action_value_mappings: Dict[str, Dict] = (
|
||||||
{}
|
{}
|
||||||
) # 用来存储多个ActionClient的type, goal, feedback, result的变量名映射关系
|
) # device_id -> action_value_mappings(本地+远程设备统一存储)
|
||||||
|
self._slave_registry_configs: Dict[str, Dict] = {} # registry_name -> registry_config(含action_value_mappings)
|
||||||
self._goals: Dict[str, Any] = {} # 用来存储多个目标的状态
|
self._goals: Dict[str, Any] = {} # 用来存储多个目标的状态
|
||||||
self._online_devices: Set[str] = {f"{self.namespace}/{device_id}"} # 用于跟踪在线设备
|
self._online_devices: Set[str] = {f"{self.namespace}/{device_id}"} # 用于跟踪在线设备
|
||||||
self._last_discovery_time = 0.0 # 上次设备发现的时间
|
self._last_discovery_time = 0.0 # 上次设备发现的时间
|
||||||
@@ -633,6 +640,8 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
self.device_machine_names[device_id] = "本地"
|
self.device_machine_names[device_id] = "本地"
|
||||||
self.devices_instances[device_id] = d
|
self.devices_instances[device_id] = d
|
||||||
# noinspection PyProtectedMember
|
# noinspection PyProtectedMember
|
||||||
|
self._action_value_mappings[device_id] = d._ros_node._action_value_mappings
|
||||||
|
# noinspection PyProtectedMember
|
||||||
for action_name, action_value_mapping in d._ros_node._action_value_mappings.items():
|
for action_name, action_value_mapping in d._ros_node._action_value_mappings.items():
|
||||||
if action_name.startswith("auto-") or str(action_value_mapping.get("type", "")).startswith(
|
if action_name.startswith("auto-") or str(action_value_mapping.get("type", "")).startswith(
|
||||||
"UniLabJsonCommand"
|
"UniLabJsonCommand"
|
||||||
@@ -755,6 +764,7 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
item: "QueueItem",
|
item: "QueueItem",
|
||||||
action_type: str,
|
action_type: str,
|
||||||
action_kwargs: Dict[str, Any],
|
action_kwargs: Dict[str, Any],
|
||||||
|
sample_material: Dict[str, str],
|
||||||
server_info: Optional[Dict[str, Any]] = None,
|
server_info: Optional[Dict[str, Any]] = None,
|
||||||
) -> None:
|
) -> None:
|
||||||
"""
|
"""
|
||||||
@@ -768,18 +778,29 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
u = uuid.UUID(item.job_id)
|
u = uuid.UUID(item.job_id)
|
||||||
device_id = item.device_id
|
device_id = item.device_id
|
||||||
action_name = item.action_name
|
action_name = item.action_name
|
||||||
|
|
||||||
|
if BasicConfig.test_mode:
|
||||||
|
action_id = f"/devices/{device_id}/{action_name}"
|
||||||
|
self.lab_logger().info(
|
||||||
|
f"[TEST MODE] 模拟执行: {action_id} (job={item.job_id[:8]}), 参数: {str(action_kwargs)[:500]}"
|
||||||
|
)
|
||||||
|
# 根据注册表 handles 构建模拟返回值
|
||||||
|
mock_return = self._build_test_mode_return(device_id, action_name, action_kwargs)
|
||||||
|
self._handle_test_mode_result(item, action_id, mock_return)
|
||||||
|
return
|
||||||
|
|
||||||
if action_type.startswith("UniLabJsonCommand"):
|
if action_type.startswith("UniLabJsonCommand"):
|
||||||
if action_name.startswith("auto-"):
|
if action_name.startswith("auto-"):
|
||||||
action_name = action_name[5:]
|
action_name = action_name[5:]
|
||||||
action_id = f"/devices/{device_id}/_execute_driver_command"
|
action_id = f"/devices/{device_id}/_execute_driver_command"
|
||||||
action_kwargs = {
|
json_command: Dict[str, Any] = {
|
||||||
"string": json.dumps(
|
"function_name": action_name,
|
||||||
{
|
"function_args": action_kwargs,
|
||||||
"function_name": action_name,
|
JSON_UNILABOS_PARAM: {
|
||||||
"function_args": action_kwargs,
|
PARAM_SAMPLE_UUIDS: sample_material,
|
||||||
}
|
},
|
||||||
)
|
|
||||||
}
|
}
|
||||||
|
action_kwargs = {"string": json.dumps(json_command)}
|
||||||
if action_type.startswith("UniLabJsonCommandAsync"):
|
if action_type.startswith("UniLabJsonCommandAsync"):
|
||||||
action_id = f"/devices/{device_id}/_execute_driver_command_async"
|
action_id = f"/devices/{device_id}/_execute_driver_command_async"
|
||||||
else:
|
else:
|
||||||
@@ -790,24 +811,9 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
raise ValueError(f"ActionClient {action_id} not found.")
|
raise ValueError(f"ActionClient {action_id} not found.")
|
||||||
|
|
||||||
action_client: ActionClient = self._action_clients[action_id]
|
action_client: ActionClient = self._action_clients[action_id]
|
||||||
|
|
||||||
# 遍历action_kwargs下的所有子dict,将"sample_uuid"的值赋给"sample_id"
|
|
||||||
def assign_sample_id(obj):
|
|
||||||
if isinstance(obj, dict):
|
|
||||||
if "sample_uuid" in obj:
|
|
||||||
obj["sample_id"] = obj["sample_uuid"]
|
|
||||||
obj.pop("sample_uuid")
|
|
||||||
for k, v in obj.items():
|
|
||||||
if k != "unilabos_extra":
|
|
||||||
assign_sample_id(v)
|
|
||||||
elif isinstance(obj, list):
|
|
||||||
for item in obj:
|
|
||||||
assign_sample_id(item)
|
|
||||||
|
|
||||||
assign_sample_id(action_kwargs)
|
|
||||||
goal_msg = convert_to_ros_msg(action_client._action_type.Goal(), action_kwargs)
|
goal_msg = convert_to_ros_msg(action_client._action_type.Goal(), action_kwargs)
|
||||||
|
|
||||||
self.lab_logger().info(f"[Host Node] Sending goal for {action_id}: {str(goal_msg)[:1000]}")
|
# self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {str(goal_msg)[:1000]}")
|
||||||
self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {action_kwargs}")
|
self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {action_kwargs}")
|
||||||
self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {goal_msg}")
|
self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {goal_msg}")
|
||||||
action_client.wait_for_server()
|
action_client.wait_for_server()
|
||||||
@@ -820,6 +826,51 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
)
|
)
|
||||||
future.add_done_callback(lambda f: self.goal_response_callback(item, action_id, f))
|
future.add_done_callback(lambda f: self.goal_response_callback(item, action_id, f))
|
||||||
|
|
||||||
|
def _build_test_mode_return(
|
||||||
|
self, device_id: str, action_name: str, action_kwargs: Dict[str, Any]
|
||||||
|
) -> Dict[str, Any]:
|
||||||
|
"""
|
||||||
|
根据注册表 handles 的 output 定义构建测试模式的模拟返回值
|
||||||
|
|
||||||
|
根据 data_key 中 @flatten 的层数决定嵌套数组层数,叶子值为空字典。
|
||||||
|
例如: "vessel" → {}, "plate.@flatten" → [{}], "a.@flatten.@flatten" → [[{}]]
|
||||||
|
"""
|
||||||
|
mock_return: Dict[str, Any] = {"test_mode": True, "action_name": action_name}
|
||||||
|
action_mappings = self._action_value_mappings.get(device_id, {})
|
||||||
|
action_mapping = action_mappings.get(action_name, {})
|
||||||
|
handles = action_mapping.get("handles", {})
|
||||||
|
if isinstance(handles, dict):
|
||||||
|
for output_handle in handles.get("output", []):
|
||||||
|
data_key = output_handle.get("data_key", "")
|
||||||
|
handler_key = output_handle.get("handler_key", "")
|
||||||
|
# 根据 @flatten 层数构建嵌套数组,叶子为空字典
|
||||||
|
flatten_count = data_key.count("@flatten")
|
||||||
|
value: Any = {}
|
||||||
|
for _ in range(flatten_count):
|
||||||
|
value = [value]
|
||||||
|
mock_return[handler_key] = value
|
||||||
|
return mock_return
|
||||||
|
|
||||||
|
def _handle_test_mode_result(
|
||||||
|
self, item: "QueueItem", action_id: str, mock_return: Dict[str, Any]
|
||||||
|
) -> None:
|
||||||
|
"""
|
||||||
|
测试模式下直接构建结果并走正常的结果回调流程(跳过 ROS)
|
||||||
|
"""
|
||||||
|
job_id = item.job_id
|
||||||
|
status = "success"
|
||||||
|
return_info = serialize_result_info("", True, mock_return)
|
||||||
|
|
||||||
|
self.lab_logger().info(f"[TEST MODE] Result for {action_id} ({job_id[:8]}): {status}")
|
||||||
|
|
||||||
|
from unilabos.app.web.controller import store_job_result
|
||||||
|
store_job_result(job_id, status, return_info, mock_return)
|
||||||
|
|
||||||
|
# 发布状态到桥接器
|
||||||
|
for bridge in self.bridges:
|
||||||
|
if hasattr(bridge, "publish_job_status"):
|
||||||
|
bridge.publish_job_status(mock_return, item, status, return_info)
|
||||||
|
|
||||||
def goal_response_callback(self, item: "QueueItem", action_id: str, future) -> None:
|
def goal_response_callback(self, item: "QueueItem", action_id: str, future) -> None:
|
||||||
"""目标响应回调"""
|
"""目标响应回调"""
|
||||||
goal_handle = future.result()
|
goal_handle = future.result()
|
||||||
@@ -867,14 +918,14 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
# 适配后端的一些额外处理
|
# 适配后端的一些额外处理
|
||||||
return_value = return_info.get("return_value")
|
return_value = return_info.get("return_value")
|
||||||
if isinstance(return_value, dict):
|
if isinstance(return_value, dict):
|
||||||
unilabos_samples = return_value.pop("unilabos_samples", None)
|
unilabos_samples = return_value.pop(RETURN_UNILABOS_SAMPLES, None)
|
||||||
if isinstance(unilabos_samples, list) and unilabos_samples:
|
if isinstance(unilabos_samples, list) and unilabos_samples:
|
||||||
self.lab_logger().info(
|
self.lab_logger().info(
|
||||||
f"[Host Node] Job {job_id[:8]} returned {len(unilabos_samples)} sample(s): "
|
f"[Host Node] Job {job_id[:8]} returned {len(unilabos_samples)} sample(s): "
|
||||||
f"{[s.get('name', s.get('id', 'unknown')) if isinstance(s, dict) else str(s)[:20] for s in unilabos_samples[:5]]}"
|
f"{[s.get('name', s.get('id', 'unknown')) if isinstance(s, dict) else str(s)[:20] for s in unilabos_samples[:5]]}"
|
||||||
f"{'...' if len(unilabos_samples) > 5 else ''}"
|
f"{'...' if len(unilabos_samples) > 5 else ''}"
|
||||||
)
|
)
|
||||||
return_info["unilabos_samples"] = unilabos_samples
|
return_info["samples"] = unilabos_samples
|
||||||
suc = return_info.get("suc", False)
|
suc = return_info.get("suc", False)
|
||||||
if not suc:
|
if not suc:
|
||||||
status = "failed"
|
status = "failed"
|
||||||
@@ -1179,8 +1230,12 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
def _node_info_update_callback(self, request, response):
|
def _node_info_update_callback(self, request, response):
|
||||||
"""
|
"""
|
||||||
更新节点信息回调
|
更新节点信息回调
|
||||||
|
|
||||||
|
处理两种消息:
|
||||||
|
1. 首次上报(main_slave_run): 带 devices_config + registry_config,存储 action_value_mappings
|
||||||
|
2. 设备重注册(SYNC_SLAVE_NODE_INFO): 带 edge_device_id + registry_name,用 registry_name 索引已存储的 mappings
|
||||||
"""
|
"""
|
||||||
# self.lab_logger().info(f"[Host Node] Node info update request received: {request}")
|
self.lab_logger().trace(f"[Host Node] Node info update request received: {request}")
|
||||||
try:
|
try:
|
||||||
from unilabos.app.communication import get_communication_client
|
from unilabos.app.communication import get_communication_client
|
||||||
from unilabos.app.web.client import HTTPClient, http_client
|
from unilabos.app.web.client import HTTPClient, http_client
|
||||||
@@ -1190,12 +1245,48 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
info = info["SYNC_SLAVE_NODE_INFO"]
|
info = info["SYNC_SLAVE_NODE_INFO"]
|
||||||
machine_name = info["machine_name"]
|
machine_name = info["machine_name"]
|
||||||
edge_device_id = info["edge_device_id"]
|
edge_device_id = info["edge_device_id"]
|
||||||
|
registry_name = info.get("registry_name", "")
|
||||||
self.device_machine_names[edge_device_id] = machine_name
|
self.device_machine_names[edge_device_id] = machine_name
|
||||||
|
|
||||||
|
# 用 registry_name 索引已存储的 registry_config,获取 action_value_mappings
|
||||||
|
if registry_name and registry_name in self._slave_registry_configs:
|
||||||
|
action_mappings = self._slave_registry_configs[registry_name].get(
|
||||||
|
"class", {}
|
||||||
|
).get("action_value_mappings", {})
|
||||||
|
if action_mappings:
|
||||||
|
self._action_value_mappings[edge_device_id] = action_mappings
|
||||||
|
self.lab_logger().info(
|
||||||
|
f"[Host Node] Loaded {len(action_mappings)} action mappings "
|
||||||
|
f"for remote device {edge_device_id} (registry: {registry_name})"
|
||||||
|
)
|
||||||
else:
|
else:
|
||||||
devices_config = info.pop("devices_config")
|
devices_config = info.pop("devices_config")
|
||||||
registry_config = info.pop("registry_config")
|
registry_config = info.pop("registry_config")
|
||||||
if registry_config:
|
if registry_config:
|
||||||
http_client.resource_registry({"resources": registry_config})
|
http_client.resource_registry({"resources": registry_config})
|
||||||
|
|
||||||
|
# 存储 slave 的 registry_config,用于后续 SYNC_SLAVE_NODE_INFO 索引
|
||||||
|
for reg_name, reg_data in registry_config.items():
|
||||||
|
if isinstance(reg_data, dict) and "class" in reg_data:
|
||||||
|
self._slave_registry_configs[reg_name] = reg_data
|
||||||
|
|
||||||
|
# 解析 devices_config,建立 device_id -> action_value_mappings 映射
|
||||||
|
if devices_config:
|
||||||
|
for device_tree in devices_config:
|
||||||
|
for device_dict in device_tree:
|
||||||
|
device_id = device_dict.get("id", "")
|
||||||
|
class_name = device_dict.get("class", "")
|
||||||
|
if device_id and class_name and class_name in self._slave_registry_configs:
|
||||||
|
action_mappings = self._slave_registry_configs[class_name].get(
|
||||||
|
"class", {}
|
||||||
|
).get("action_value_mappings", {})
|
||||||
|
if action_mappings:
|
||||||
|
self._action_value_mappings[device_id] = action_mappings
|
||||||
|
self.lab_logger().info(
|
||||||
|
f"[Host Node] Stored {len(action_mappings)} action mappings "
|
||||||
|
f"for remote device {device_id} (class: {class_name})"
|
||||||
|
)
|
||||||
|
|
||||||
self.lab_logger().debug(f"[Host Node] Node info update: {info}")
|
self.lab_logger().debug(f"[Host Node] Node info update: {info}")
|
||||||
response.response = "OK"
|
response.response = "OK"
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
@@ -1492,6 +1583,7 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
|
|
||||||
def test_resource(
|
def test_resource(
|
||||||
self,
|
self,
|
||||||
|
sample_uuids: SampleUUIDsType,
|
||||||
resource: ResourceSlot = None,
|
resource: ResourceSlot = None,
|
||||||
resources: List[ResourceSlot] = None,
|
resources: List[ResourceSlot] = None,
|
||||||
device: DeviceSlot = None,
|
device: DeviceSlot = None,
|
||||||
@@ -1506,6 +1598,7 @@ class HostNode(BaseROS2DeviceNode):
|
|||||||
return {
|
return {
|
||||||
"resources": ResourceTreeSet.from_plr_resources([resource, *resources], known_newly_created=True).dump(),
|
"resources": ResourceTreeSet.from_plr_resources([resource, *resources], known_newly_created=True).dump(),
|
||||||
"devices": [device, *devices],
|
"devices": [device, *devices],
|
||||||
|
"unilabos_samples": [LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for sample_uuid, content in sample_uuids.items()]
|
||||||
}
|
}
|
||||||
|
|
||||||
def handle_pong_response(self, pong_data: dict):
|
def handle_pong_response(self, pong_data: dict):
|
||||||
|
|||||||
@@ -7,10 +7,11 @@ from rclpy.callback_groups import ReentrantCallbackGroup
|
|||||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
|
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
|
||||||
|
|
||||||
class JointRepublisher(BaseROS2DeviceNode):
|
class JointRepublisher(BaseROS2DeviceNode):
|
||||||
def __init__(self,device_id,resource_tracker, **kwargs):
|
def __init__(self,device_id, registry_name, resource_tracker, **kwargs):
|
||||||
super().__init__(
|
super().__init__(
|
||||||
driver_instance=self,
|
driver_instance=self,
|
||||||
device_id=device_id,
|
device_id=device_id,
|
||||||
|
registry_name=registry_name,
|
||||||
status_types={},
|
status_types={},
|
||||||
action_value_mappings={},
|
action_value_mappings={},
|
||||||
hardware_interface={},
|
hardware_interface={},
|
||||||
|
|||||||
@@ -26,7 +26,7 @@ from unilabos.resources.graphio import initialize_resources
|
|||||||
from unilabos.registry.registry import lab_registry
|
from unilabos.registry.registry import lab_registry
|
||||||
|
|
||||||
class ResourceMeshManager(BaseROS2DeviceNode):
|
class ResourceMeshManager(BaseROS2DeviceNode):
|
||||||
def __init__(self, resource_model: dict, resource_config: list,resource_tracker, device_id: str = "resource_mesh_manager", rate=50, **kwargs):
|
def __init__(self, resource_model: dict, resource_config: list,resource_tracker, device_id: str = "resource_mesh_manager", registry_name: str = "", rate=50, **kwargs):
|
||||||
"""初始化资源网格管理器节点
|
"""初始化资源网格管理器节点
|
||||||
|
|
||||||
Args:
|
Args:
|
||||||
@@ -37,6 +37,7 @@ class ResourceMeshManager(BaseROS2DeviceNode):
|
|||||||
super().__init__(
|
super().__init__(
|
||||||
driver_instance=self,
|
driver_instance=self,
|
||||||
device_id=device_id,
|
device_id=device_id,
|
||||||
|
registry_name=registry_name,
|
||||||
status_types={},
|
status_types={},
|
||||||
action_value_mappings={},
|
action_value_mappings={},
|
||||||
hardware_interface={},
|
hardware_interface={},
|
||||||
|
|||||||
@@ -7,7 +7,7 @@ from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, DeviceNodeRe
|
|||||||
|
|
||||||
|
|
||||||
class ROS2SerialNode(BaseROS2DeviceNode):
|
class ROS2SerialNode(BaseROS2DeviceNode):
|
||||||
def __init__(self, device_id, port: str, baudrate: int = 9600, resource_tracker: DeviceNodeResourceTracker=None):
|
def __init__(self, device_id, registry_name, port: str, baudrate: int = 9600, resource_tracker: DeviceNodeResourceTracker=None):
|
||||||
# 保存属性,以便在调用父类初始化前使用
|
# 保存属性,以便在调用父类初始化前使用
|
||||||
self.port = port
|
self.port = port
|
||||||
self.baudrate = baudrate
|
self.baudrate = baudrate
|
||||||
@@ -28,6 +28,7 @@ class ROS2SerialNode(BaseROS2DeviceNode):
|
|||||||
BaseROS2DeviceNode.__init__(
|
BaseROS2DeviceNode.__init__(
|
||||||
self,
|
self,
|
||||||
driver_instance=self,
|
driver_instance=self,
|
||||||
|
registry_name=registry_name,
|
||||||
device_id=device_id,
|
device_id=device_id,
|
||||||
status_types={},
|
status_types={},
|
||||||
action_value_mappings={},
|
action_value_mappings={},
|
||||||
|
|||||||
@@ -47,6 +47,7 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
|
|||||||
*,
|
*,
|
||||||
driver_instance: "WorkstationBase",
|
driver_instance: "WorkstationBase",
|
||||||
device_id: str,
|
device_id: str,
|
||||||
|
registry_name: str,
|
||||||
device_uuid: str,
|
device_uuid: str,
|
||||||
status_types: Dict[str, Any],
|
status_types: Dict[str, Any],
|
||||||
action_value_mappings: Dict[str, Any],
|
action_value_mappings: Dict[str, Any],
|
||||||
@@ -62,6 +63,7 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
|
|||||||
super().__init__(
|
super().__init__(
|
||||||
driver_instance=driver_instance,
|
driver_instance=driver_instance,
|
||||||
device_id=device_id,
|
device_id=device_id,
|
||||||
|
registry_name=registry_name,
|
||||||
device_uuid=device_uuid,
|
device_uuid=device_uuid,
|
||||||
status_types=status_types,
|
status_types=status_types,
|
||||||
action_value_mappings={**action_value_mappings, **self.protocol_action_mappings},
|
action_value_mappings={**action_value_mappings, **self.protocol_action_mappings},
|
||||||
@@ -340,6 +342,8 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
|
|||||||
plr = self.resource_tracker.figure_resource({"name": res_name}, try_mode=False)
|
plr = self.resource_tracker.figure_resource({"name": res_name}, try_mode=False)
|
||||||
# 获取父资源
|
# 获取父资源
|
||||||
res = self.resource_tracker.parent_resource(plr)
|
res = self.resource_tracker.parent_resource(plr)
|
||||||
|
if res is None:
|
||||||
|
res = plr
|
||||||
if id(res) not in seen:
|
if id(res) not in seen:
|
||||||
seen.add(id(res))
|
seen.add(id(res))
|
||||||
unique_resources.append(res)
|
unique_resources.append(res)
|
||||||
|
|||||||
@@ -52,7 +52,8 @@ class DeviceClassCreator(Generic[T]):
|
|||||||
if self.device_instance is not None:
|
if self.device_instance is not None:
|
||||||
for c in self.children:
|
for c in self.children:
|
||||||
if c.res_content.type != "device":
|
if c.res_content.type != "device":
|
||||||
self.resource_tracker.add_resource(c.get_plr_nested_dict())
|
res = ResourceTreeSet([ResourceTreeInstance(c)]).to_plr_resources()[0]
|
||||||
|
self.resource_tracker.add_resource(res)
|
||||||
|
|
||||||
def create_instance(self, data: Dict[str, Any]) -> T:
|
def create_instance(self, data: Dict[str, Any]) -> T:
|
||||||
"""
|
"""
|
||||||
@@ -119,7 +120,7 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
|
|||||||
# return resource, source_type
|
# return resource, source_type
|
||||||
|
|
||||||
def _process_resource_references(
|
def _process_resource_references(
|
||||||
self, data: Any, to_dict=False, states=None, prefix_path="", name_to_uuid=None
|
self, data: Any, processed_child_names: Optional[Dict[str, Any]], to_dict=False, states=None, prefix_path="", name_to_uuid=None
|
||||||
) -> Any:
|
) -> Any:
|
||||||
"""
|
"""
|
||||||
递归处理资源引用,替换_resource_child_name对应的资源
|
递归处理资源引用,替换_resource_child_name对应的资源
|
||||||
@@ -164,6 +165,7 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
|
|||||||
states[prefix_path] = resource_instance.serialize_all_state()
|
states[prefix_path] = resource_instance.serialize_all_state()
|
||||||
return serialized
|
return serialized
|
||||||
else:
|
else:
|
||||||
|
processed_child_names[child_name] = resource_instance
|
||||||
self.resource_tracker.add_resource(resource_instance)
|
self.resource_tracker.add_resource(resource_instance)
|
||||||
# 立即设置UUID,state已经在resource_ulab_to_plr中处理过了
|
# 立即设置UUID,state已经在resource_ulab_to_plr中处理过了
|
||||||
if name_to_uuid:
|
if name_to_uuid:
|
||||||
@@ -182,12 +184,12 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
|
|||||||
result = {}
|
result = {}
|
||||||
for key, value in data.items():
|
for key, value in data.items():
|
||||||
new_prefix = f"{prefix_path}.{key}" if prefix_path else key
|
new_prefix = f"{prefix_path}.{key}" if prefix_path else key
|
||||||
result[key] = self._process_resource_references(value, to_dict, states, new_prefix, name_to_uuid)
|
result[key] = self._process_resource_references(value, processed_child_names, to_dict, states, new_prefix, name_to_uuid)
|
||||||
return result
|
return result
|
||||||
|
|
||||||
elif isinstance(data, list):
|
elif isinstance(data, list):
|
||||||
return [
|
return [
|
||||||
self._process_resource_references(item, to_dict, states, f"{prefix_path}[{i}]", name_to_uuid)
|
self._process_resource_references(item, processed_child_names, to_dict, states, f"{prefix_path}[{i}]", name_to_uuid)
|
||||||
for i, item in enumerate(data)
|
for i, item in enumerate(data)
|
||||||
]
|
]
|
||||||
|
|
||||||
@@ -234,7 +236,7 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
|
|||||||
# 首先处理资源引用
|
# 首先处理资源引用
|
||||||
states = {}
|
states = {}
|
||||||
processed_data = self._process_resource_references(
|
processed_data = self._process_resource_references(
|
||||||
data, to_dict=True, states=states, name_to_uuid=name_to_uuid
|
data, {}, to_dict=True, states=states, name_to_uuid=name_to_uuid
|
||||||
)
|
)
|
||||||
|
|
||||||
try:
|
try:
|
||||||
@@ -270,7 +272,12 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
|
|||||||
arg_value = spec_args[param_name].annotation
|
arg_value = spec_args[param_name].annotation
|
||||||
data[param_name]["_resource_type"] = self.device_cls.__module__ + ":" + arg_value
|
data[param_name]["_resource_type"] = self.device_cls.__module__ + ":" + arg_value
|
||||||
logger.debug(f"自动补充 _resource_type: {data[param_name]['_resource_type']}")
|
logger.debug(f"自动补充 _resource_type: {data[param_name]['_resource_type']}")
|
||||||
processed_data = self._process_resource_references(data, to_dict=False, name_to_uuid=name_to_uuid)
|
processed_child_names = {}
|
||||||
|
processed_data = self._process_resource_references(data, processed_child_names, to_dict=False, name_to_uuid=name_to_uuid)
|
||||||
|
for child_name, resource_instance in processed_data.items():
|
||||||
|
for ind, name in enumerate([child.res_content.name for child in self.children]):
|
||||||
|
if name == child_name:
|
||||||
|
self.children.pop(ind)
|
||||||
self.device_instance = super(PyLabRobotCreator, self).create_instance(processed_data) # 补全变量后直接调用,调用的自身的attach_resource
|
self.device_instance = super(PyLabRobotCreator, self).create_instance(processed_data) # 补全变量后直接调用,调用的自身的attach_resource
|
||||||
except Exception as e:
|
except Exception as e:
|
||||||
logger.error(f"PyLabRobot创建实例失败: {e}")
|
logger.error(f"PyLabRobot创建实例失败: {e}")
|
||||||
@@ -342,9 +349,10 @@ class WorkstationNodeCreator(DeviceClassCreator[T]):
|
|||||||
try:
|
try:
|
||||||
# 创建实例,额外补充一个给protocol node的字段,后面考虑取消
|
# 创建实例,额外补充一个给protocol node的字段,后面考虑取消
|
||||||
data["children"] = self.children
|
data["children"] = self.children
|
||||||
for child in self.children:
|
# super(WorkstationNodeCreator, self).create_instance(data)的时候会attach
|
||||||
if child.res_content.type != "device":
|
# for child in self.children:
|
||||||
self.resource_tracker.add_resource(child.get_plr_nested_dict())
|
# if child.res_content.type != "device":
|
||||||
|
# self.resource_tracker.add_resource(child.get_plr_nested_dict())
|
||||||
deck_dict = data.get("deck")
|
deck_dict = data.get("deck")
|
||||||
if deck_dict:
|
if deck_dict:
|
||||||
from pylabrobot.resources import Deck, Resource
|
from pylabrobot.resources import Deck, Resource
|
||||||
|
|||||||
@@ -339,13 +339,8 @@
|
|||||||
"z": 0
|
"z": 0
|
||||||
},
|
},
|
||||||
"config": {
|
"config": {
|
||||||
"max_volume": 500.0,
|
|
||||||
"type": "RegularContainer",
|
"type": "RegularContainer",
|
||||||
"category": "container",
|
"category": "container"
|
||||||
"max_temp": 200.0,
|
|
||||||
"min_temp": -20.0,
|
|
||||||
"has_stirrer": true,
|
|
||||||
"has_heater": true
|
|
||||||
},
|
},
|
||||||
"data": {
|
"data": {
|
||||||
"liquids": [],
|
"liquids": [],
|
||||||
@@ -769,9 +764,7 @@
|
|||||||
"size_y": 250,
|
"size_y": 250,
|
||||||
"size_z": 0,
|
"size_z": 0,
|
||||||
"type": "RegularContainer",
|
"type": "RegularContainer",
|
||||||
"category": "container",
|
"category": "container"
|
||||||
"reagent": "sodium_chloride",
|
|
||||||
"physical_state": "solid"
|
|
||||||
},
|
},
|
||||||
"data": {
|
"data": {
|
||||||
"current_mass": 500.0,
|
"current_mass": 500.0,
|
||||||
@@ -792,14 +785,11 @@
|
|||||||
"z": 0
|
"z": 0
|
||||||
},
|
},
|
||||||
"config": {
|
"config": {
|
||||||
"volume": 500.0,
|
|
||||||
"size_x": 600,
|
"size_x": 600,
|
||||||
"size_y": 250,
|
"size_y": 250,
|
||||||
"size_z": 0,
|
"size_z": 0,
|
||||||
"type": "RegularContainer",
|
"type": "RegularContainer",
|
||||||
"category": "container",
|
"category": "container"
|
||||||
"reagent": "sodium_carbonate",
|
|
||||||
"physical_state": "solid"
|
|
||||||
},
|
},
|
||||||
"data": {
|
"data": {
|
||||||
"current_mass": 500.0,
|
"current_mass": 500.0,
|
||||||
@@ -820,14 +810,11 @@
|
|||||||
"z": 0
|
"z": 0
|
||||||
},
|
},
|
||||||
"config": {
|
"config": {
|
||||||
"volume": 500.0,
|
|
||||||
"size_x": 650,
|
"size_x": 650,
|
||||||
"size_y": 250,
|
"size_y": 250,
|
||||||
"size_z": 0,
|
"size_z": 0,
|
||||||
"type": "RegularContainer",
|
"type": "RegularContainer",
|
||||||
"category": "container",
|
"category": "container"
|
||||||
"reagent": "magnesium_chloride",
|
|
||||||
"physical_state": "solid"
|
|
||||||
},
|
},
|
||||||
"data": {
|
"data": {
|
||||||
"current_mass": 500.0,
|
"current_mass": 500.0,
|
||||||
|
|||||||
795
unilabos/test/experiments/prcxi_9320_slim.json
Normal file
795
unilabos/test/experiments/prcxi_9320_slim.json
Normal file
@@ -0,0 +1,795 @@
|
|||||||
|
{
|
||||||
|
"nodes": [
|
||||||
|
{
|
||||||
|
"id": "PRCXI",
|
||||||
|
"name": "PRCXI",
|
||||||
|
"type": "device",
|
||||||
|
"class": "liquid_handler.prcxi",
|
||||||
|
"parent": "",
|
||||||
|
"pose": {
|
||||||
|
"size": {
|
||||||
|
"width": 562,
|
||||||
|
"height": 394,
|
||||||
|
"depth": 0
|
||||||
|
}
|
||||||
|
},
|
||||||
|
"config": {
|
||||||
|
"axis": "Left",
|
||||||
|
"deck": {
|
||||||
|
"_resource_type": "unilabos.devices.liquid_handling.prcxi.prcxi:PRCXI9300Deck",
|
||||||
|
"_resource_child_name": "PRCXI_Deck"
|
||||||
|
},
|
||||||
|
"host": "10.20.30.184",
|
||||||
|
"port": 9999,
|
||||||
|
"debug": true,
|
||||||
|
"setup": true,
|
||||||
|
"is_9320": true,
|
||||||
|
"timeout": 10,
|
||||||
|
"matrix_id": "5de524d0-3f95-406c-86dd-f83626ebc7cb",
|
||||||
|
"simulator": true,
|
||||||
|
"channel_num": 2
|
||||||
|
},
|
||||||
|
"data": {
|
||||||
|
"reset_ok": true
|
||||||
|
},
|
||||||
|
"schema": {},
|
||||||
|
"description": "",
|
||||||
|
"model": null,
|
||||||
|
"position": {
|
||||||
|
"x": 0,
|
||||||
|
"y": 240,
|
||||||
|
"z": 0
|
||||||
|
}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"id": "PRCXI_Deck",
|
||||||
|
"name": "PRCXI_Deck",
|
||||||
|
|
||||||
|
"children": [],
|
||||||
|
"parent": "PRCXI",
|
||||||
|
"type": "deck",
|
||||||
|
"class": "",
|
||||||
|
"position": {
|
||||||
|
"x": 10,
|
||||||
|
"y": 10,
|
||||||
|
"z": 0
|
||||||
|
},
|
||||||
|
"config": {
|
||||||
|
"type": "PRCXI9300Deck",
|
||||||
|
"size_x": 542,
|
||||||
|
"size_y": 374,
|
||||||
|
"size_z": 0,
|
||||||
|
"rotation": {
|
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||||||
|
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||||
|
"content_type": [
|
||||||
|
"plate",
|
||||||
|
"tip_rack",
|
||||||
|
"plates",
|
||||||
|
"tip_racks",
|
||||||
|
"tube_rack"
|
||||||
|
]
|
||||||
|
}
|
||||||
|
]
|
||||||
|
},
|
||||||
|
"data": {}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"id": "T11",
|
||||||
|
"name": "T11",
|
||||||
|
"children": [],
|
||||||
|
"parent": "PRCXI_Deck",
|
||||||
|
"type": "plate",
|
||||||
|
"class": "",
|
||||||
|
"position": {
|
||||||
|
"x": 276,
|
||||||
|
"y": 96,
|
||||||
|
"z": 0
|
||||||
|
},
|
||||||
|
"config": {
|
||||||
|
"type": "PRCXI9300Container",
|
||||||
|
"size_x": 127,
|
||||||
|
"size_y": 85.5,
|
||||||
|
"size_z": 10,
|
||||||
|
"rotation": {
|
||||||
|
"x": 0,
|
||||||
|
"y": 0,
|
||||||
|
"z": 0,
|
||||||
|
"type": "Rotation"
|
||||||
|
},
|
||||||
|
"category": "plate",
|
||||||
|
"model": null,
|
||||||
|
"barcode": null,
|
||||||
|
"ordering": {},
|
||||||
|
"sites": [
|
||||||
|
{
|
||||||
|
"label": "T11",
|
||||||
|
"visible": true,
|
||||||
|
"position": { "x": 0, "y": 0, "z": 0 },
|
||||||
|
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||||
|
"content_type": [
|
||||||
|
"plate",
|
||||||
|
"tip_rack",
|
||||||
|
"plates",
|
||||||
|
"tip_racks",
|
||||||
|
"tube_rack"
|
||||||
|
]
|
||||||
|
}
|
||||||
|
]
|
||||||
|
},
|
||||||
|
"data": {}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"id": "T12",
|
||||||
|
"name": "T12",
|
||||||
|
"children": [],
|
||||||
|
"parent": "PRCXI_Deck",
|
||||||
|
"type": "plate",
|
||||||
|
"class": "",
|
||||||
|
"position": {
|
||||||
|
"x": 414,
|
||||||
|
"y": 96,
|
||||||
|
"z": 0
|
||||||
|
},
|
||||||
|
"config": {
|
||||||
|
"type": "PRCXI9300Container",
|
||||||
|
"size_x": 127,
|
||||||
|
"size_y": 85.5,
|
||||||
|
"size_z": 10,
|
||||||
|
"rotation": {
|
||||||
|
"x": 0,
|
||||||
|
"y": 0,
|
||||||
|
"z": 0,
|
||||||
|
"type": "Rotation"
|
||||||
|
},
|
||||||
|
"category": "plate",
|
||||||
|
"model": null,
|
||||||
|
"barcode": null,
|
||||||
|
"ordering": {},
|
||||||
|
"sites": [
|
||||||
|
{
|
||||||
|
"label": "T12",
|
||||||
|
"visible": true,
|
||||||
|
"position": { "x": 0, "y": 0, "z": 0 },
|
||||||
|
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||||
|
"content_type": [
|
||||||
|
"plate",
|
||||||
|
"tip_rack",
|
||||||
|
"plates",
|
||||||
|
"tip_racks",
|
||||||
|
"tube_rack"
|
||||||
|
]
|
||||||
|
}
|
||||||
|
]
|
||||||
|
},
|
||||||
|
"data": {}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"id": "T13",
|
||||||
|
"name": "T13",
|
||||||
|
"children": [],
|
||||||
|
"parent": "PRCXI_Deck",
|
||||||
|
"type": "plate",
|
||||||
|
"class": "",
|
||||||
|
"position": {
|
||||||
|
"x": 0,
|
||||||
|
"y": 0,
|
||||||
|
"z": 0
|
||||||
|
},
|
||||||
|
"config": {
|
||||||
|
"type": "PRCXI9300Container",
|
||||||
|
"size_x": 127,
|
||||||
|
"size_y": 85.5,
|
||||||
|
"size_z": 10,
|
||||||
|
"rotation": {
|
||||||
|
"x": 0,
|
||||||
|
"y": 0,
|
||||||
|
"z": 0,
|
||||||
|
"type": "Rotation"
|
||||||
|
},
|
||||||
|
"category": "plate",
|
||||||
|
"model": null,
|
||||||
|
"barcode": null,
|
||||||
|
"ordering": {},
|
||||||
|
"sites": [
|
||||||
|
{
|
||||||
|
"label": "T13",
|
||||||
|
"visible": true,
|
||||||
|
"position": { "x": 0, "y": 0, "z": 0 },
|
||||||
|
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||||
|
"content_type": [
|
||||||
|
"plate",
|
||||||
|
"tip_rack",
|
||||||
|
"plates",
|
||||||
|
"tip_racks",
|
||||||
|
"tube_rack"
|
||||||
|
]
|
||||||
|
}
|
||||||
|
]
|
||||||
|
},
|
||||||
|
"data": {}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"id": "T14",
|
||||||
|
"name": "T14",
|
||||||
|
"children": [],
|
||||||
|
"parent": "PRCXI_Deck",
|
||||||
|
"type": "plate",
|
||||||
|
"class": "",
|
||||||
|
"position": {
|
||||||
|
"x": 138,
|
||||||
|
"y": 0,
|
||||||
|
"z": 0
|
||||||
|
},
|
||||||
|
"config": {
|
||||||
|
"type": "PRCXI9300Container",
|
||||||
|
"size_x": 127,
|
||||||
|
"size_y": 85.5,
|
||||||
|
"size_z": 10,
|
||||||
|
"rotation": {
|
||||||
|
"x": 0,
|
||||||
|
"y": 0,
|
||||||
|
"z": 0,
|
||||||
|
"type": "Rotation"
|
||||||
|
},
|
||||||
|
"category": "plate",
|
||||||
|
"model": null,
|
||||||
|
"barcode": null,
|
||||||
|
"ordering": {},
|
||||||
|
"sites": [
|
||||||
|
{
|
||||||
|
"label": "T14",
|
||||||
|
"visible": true,
|
||||||
|
"position": { "x": 0, "y": 0, "z": 0 },
|
||||||
|
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||||
|
"content_type": [
|
||||||
|
"plate",
|
||||||
|
"tip_rack",
|
||||||
|
"plates",
|
||||||
|
"tip_racks",
|
||||||
|
"tube_rack"
|
||||||
|
]
|
||||||
|
}
|
||||||
|
]
|
||||||
|
},
|
||||||
|
"data": {}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"id": "T15",
|
||||||
|
"name": "T15",
|
||||||
|
"children": [],
|
||||||
|
"parent": "PRCXI_Deck",
|
||||||
|
"type": "plate",
|
||||||
|
"class": "",
|
||||||
|
"position": {
|
||||||
|
"x": 276,
|
||||||
|
"y": 0,
|
||||||
|
"z": 0
|
||||||
|
},
|
||||||
|
"config": {
|
||||||
|
"type": "PRCXI9300Container",
|
||||||
|
"size_x": 127,
|
||||||
|
"size_y": 85.5,
|
||||||
|
"size_z": 10,
|
||||||
|
"rotation": {
|
||||||
|
"x": 0,
|
||||||
|
"y": 0,
|
||||||
|
"z": 0,
|
||||||
|
"type": "Rotation"
|
||||||
|
},
|
||||||
|
"category": "plate",
|
||||||
|
"model": null,
|
||||||
|
"barcode": null,
|
||||||
|
"ordering": {},
|
||||||
|
"sites": [
|
||||||
|
{
|
||||||
|
"label": "T15",
|
||||||
|
"visible": true,
|
||||||
|
"position": { "x": 0, "y": 0, "z": 0 },
|
||||||
|
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||||
|
"content_type": [
|
||||||
|
"plate",
|
||||||
|
"tip_rack",
|
||||||
|
"plates",
|
||||||
|
"tip_racks",
|
||||||
|
"tube_rack"
|
||||||
|
]
|
||||||
|
}
|
||||||
|
]
|
||||||
|
},
|
||||||
|
"data": {}
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"id": "T16",
|
||||||
|
"name": "T16",
|
||||||
|
"children": [],
|
||||||
|
"parent": "PRCXI_Deck",
|
||||||
|
"type": "plate",
|
||||||
|
"class": "",
|
||||||
|
"position": {
|
||||||
|
"x": 414,
|
||||||
|
"y": 0,
|
||||||
|
"z": 0
|
||||||
|
},
|
||||||
|
"config": {
|
||||||
|
"type": "PRCXI9300Container",
|
||||||
|
"size_x": 127,
|
||||||
|
"size_y": 85.5,
|
||||||
|
"size_z": 10,
|
||||||
|
"rotation": {
|
||||||
|
"x": 0,
|
||||||
|
"y": 0,
|
||||||
|
"z": 0,
|
||||||
|
"type": "Rotation"
|
||||||
|
},
|
||||||
|
"category": "plate",
|
||||||
|
"model": null,
|
||||||
|
"barcode": null,
|
||||||
|
"ordering": {},
|
||||||
|
"sites": [
|
||||||
|
{
|
||||||
|
"label": "T16",
|
||||||
|
"visible": true,
|
||||||
|
"position": { "x": 0, "y": 0, "z": 0 },
|
||||||
|
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||||
|
"content_type": [
|
||||||
|
"plate",
|
||||||
|
"tip_rack",
|
||||||
|
"plates",
|
||||||
|
"tip_racks",
|
||||||
|
"tube_rack"
|
||||||
|
]
|
||||||
|
}
|
||||||
|
]
|
||||||
|
},
|
||||||
|
"data": {}
|
||||||
|
}
|
||||||
|
],
|
||||||
|
"edges": []
|
||||||
|
}
|
||||||
@@ -184,6 +184,51 @@ def get_all_subscriptions(instance) -> list:
|
|||||||
return subscriptions
|
return subscriptions
|
||||||
|
|
||||||
|
|
||||||
|
def always_free(func: F) -> F:
|
||||||
|
"""
|
||||||
|
标记动作为永久闲置(不受busy队列限制)的装饰器
|
||||||
|
|
||||||
|
被此装饰器标记的 action 方法,在执行时不会受到设备级别的排队限制,
|
||||||
|
任何时候请求都可以立即执行。适用于查询类、状态读取类等轻量级操作。
|
||||||
|
|
||||||
|
Example:
|
||||||
|
class MyDriver:
|
||||||
|
@always_free
|
||||||
|
def query_status(self, param: str):
|
||||||
|
# 这个动作可以随时执行,不需要排队
|
||||||
|
return self._status
|
||||||
|
|
||||||
|
def transfer(self, volume: float):
|
||||||
|
# 这个动作会按正常排队逻辑执行
|
||||||
|
pass
|
||||||
|
|
||||||
|
Note:
|
||||||
|
- 可以与其他装饰器组合使用,@always_free 应放在最外层
|
||||||
|
- 仅影响 WebSocket 调度层的 busy/free 判断,不影响 ROS2 层
|
||||||
|
"""
|
||||||
|
|
||||||
|
@wraps(func)
|
||||||
|
def wrapper(*args, **kwargs):
|
||||||
|
return func(*args, **kwargs)
|
||||||
|
|
||||||
|
wrapper._is_always_free = True # type: ignore[attr-defined]
|
||||||
|
|
||||||
|
return wrapper # type: ignore[return-value]
|
||||||
|
|
||||||
|
|
||||||
|
def is_always_free(func) -> bool:
|
||||||
|
"""
|
||||||
|
检查函数是否被标记为永久闲置
|
||||||
|
|
||||||
|
Args:
|
||||||
|
func: 被检查的函数
|
||||||
|
|
||||||
|
Returns:
|
||||||
|
如果函数被 @always_free 装饰则返回 True,否则返回 False
|
||||||
|
"""
|
||||||
|
return getattr(func, "_is_always_free", False)
|
||||||
|
|
||||||
|
|
||||||
def not_action(func: F) -> F:
|
def not_action(func: F) -> F:
|
||||||
"""
|
"""
|
||||||
标记方法为非动作的装饰器
|
标记方法为非动作的装饰器
|
||||||
|
|||||||
@@ -27,8 +27,9 @@ __all__ = [
|
|||||||
|
|
||||||
from ast import Constant
|
from ast import Constant
|
||||||
|
|
||||||
|
from unilabos.resources.resource_tracker import PARAM_SAMPLE_UUIDS
|
||||||
from unilabos.utils import logger
|
from unilabos.utils import logger
|
||||||
from unilabos.utils.decorator import is_not_action
|
from unilabos.utils.decorator import is_not_action, is_always_free
|
||||||
|
|
||||||
|
|
||||||
class ImportManager:
|
class ImportManager:
|
||||||
@@ -281,6 +282,9 @@ class ImportManager:
|
|||||||
continue
|
continue
|
||||||
# 其他非_开头的方法归类为action
|
# 其他非_开头的方法归类为action
|
||||||
method_info = self._analyze_method_signature(method)
|
method_info = self._analyze_method_signature(method)
|
||||||
|
# 检查是否被 @always_free 装饰器标记
|
||||||
|
if is_always_free(method):
|
||||||
|
method_info["always_free"] = True
|
||||||
result["action_methods"][name] = method_info
|
result["action_methods"][name] = method_info
|
||||||
|
|
||||||
return result
|
return result
|
||||||
@@ -338,16 +342,24 @@ class ImportManager:
|
|||||||
if self._is_not_action_method(node):
|
if self._is_not_action_method(node):
|
||||||
continue
|
continue
|
||||||
# 其他非_开头的方法归类为action
|
# 其他非_开头的方法归类为action
|
||||||
|
# 检查是否被 @always_free 装饰器标记
|
||||||
|
if self._is_always_free_method(node):
|
||||||
|
method_info["always_free"] = True
|
||||||
result["action_methods"][method_name] = method_info
|
result["action_methods"][method_name] = method_info
|
||||||
return result
|
return result
|
||||||
|
|
||||||
def _analyze_method_signature(self, method) -> Dict[str, Any]:
|
def _analyze_method_signature(self, method, skip_unilabos_params: bool = True) -> Dict[str, Any]:
|
||||||
"""
|
"""
|
||||||
分析方法签名,提取具体的命名参数信息
|
分析方法签名,提取具体的命名参数信息
|
||||||
|
|
||||||
注意:此方法会跳过*args和**kwargs,只提取具体的命名参数
|
注意:此方法会跳过*args和**kwargs,只提取具体的命名参数
|
||||||
这样可以确保通过**dict方式传参时的准确性
|
这样可以确保通过**dict方式传参时的准确性
|
||||||
|
|
||||||
|
Args:
|
||||||
|
method: 要分析的方法
|
||||||
|
skip_unilabos_params: 是否跳过 unilabos 系统参数(如 sample_uuids),
|
||||||
|
registry 补全时为 True,JsonCommand 执行时为 False
|
||||||
|
|
||||||
示例用法:
|
示例用法:
|
||||||
method_info = self._analyze_method_signature(some_method)
|
method_info = self._analyze_method_signature(some_method)
|
||||||
params = {"param1": "value1", "param2": "value2"}
|
params = {"param1": "value1", "param2": "value2"}
|
||||||
@@ -368,6 +380,10 @@ class ImportManager:
|
|||||||
if param.kind == param.VAR_KEYWORD: # **kwargs
|
if param.kind == param.VAR_KEYWORD: # **kwargs
|
||||||
continue
|
continue
|
||||||
|
|
||||||
|
# 跳过 sample_uuids 参数(由系统自动注入,registry 补全时跳过)
|
||||||
|
if skip_unilabos_params and param_name == PARAM_SAMPLE_UUIDS:
|
||||||
|
continue
|
||||||
|
|
||||||
is_required = param.default == inspect.Parameter.empty
|
is_required = param.default == inspect.Parameter.empty
|
||||||
if is_required:
|
if is_required:
|
||||||
num_required += 1
|
num_required += 1
|
||||||
@@ -464,6 +480,13 @@ class ImportManager:
|
|||||||
return True
|
return True
|
||||||
return False
|
return False
|
||||||
|
|
||||||
|
def _is_always_free_method(self, node: ast.FunctionDef) -> bool:
|
||||||
|
"""检查是否是@always_free装饰的方法"""
|
||||||
|
for decorator in node.decorator_list:
|
||||||
|
if isinstance(decorator, ast.Name) and decorator.id == "always_free":
|
||||||
|
return True
|
||||||
|
return False
|
||||||
|
|
||||||
def _get_property_name_from_setter(self, node: ast.FunctionDef) -> str:
|
def _get_property_name_from_setter(self, node: ast.FunctionDef) -> str:
|
||||||
"""从setter装饰器中获取属性名"""
|
"""从setter装饰器中获取属性名"""
|
||||||
for decorator in node.decorator_list:
|
for decorator in node.decorator_list:
|
||||||
@@ -563,6 +586,9 @@ class ImportManager:
|
|||||||
for i, arg in enumerate(node.args.args):
|
for i, arg in enumerate(node.args.args):
|
||||||
if arg.arg == "self":
|
if arg.arg == "self":
|
||||||
continue
|
continue
|
||||||
|
# 跳过 sample_uuids 参数(由系统自动注入)
|
||||||
|
if arg.arg == PARAM_SAMPLE_UUIDS:
|
||||||
|
continue
|
||||||
arg_info = {
|
arg_info = {
|
||||||
"name": arg.arg,
|
"name": arg.arg,
|
||||||
"type": None,
|
"type": None,
|
||||||
|
|||||||
@@ -193,6 +193,7 @@ def configure_logger(loglevel=None, working_dir=None):
|
|||||||
root_logger.addHandler(console_handler)
|
root_logger.addHandler(console_handler)
|
||||||
|
|
||||||
# 如果指定了工作目录,添加文件处理器
|
# 如果指定了工作目录,添加文件处理器
|
||||||
|
log_filepath = None
|
||||||
if working_dir is not None:
|
if working_dir is not None:
|
||||||
logs_dir = os.path.join(working_dir, "logs")
|
logs_dir = os.path.join(working_dir, "logs")
|
||||||
os.makedirs(logs_dir, exist_ok=True)
|
os.makedirs(logs_dir, exist_ok=True)
|
||||||
@@ -213,6 +214,7 @@ def configure_logger(loglevel=None, working_dir=None):
|
|||||||
|
|
||||||
logging.getLogger("asyncio").setLevel(logging.INFO)
|
logging.getLogger("asyncio").setLevel(logging.INFO)
|
||||||
logging.getLogger("urllib3").setLevel(logging.INFO)
|
logging.getLogger("urllib3").setLevel(logging.INFO)
|
||||||
|
return log_filepath
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|||||||
@@ -19,7 +19,9 @@
|
|||||||
|
|
||||||
第一步: 按 slot 去重创建 create_resource 节点(创建板子)
|
第一步: 按 slot 去重创建 create_resource 节点(创建板子)
|
||||||
--------------------------------------------------------------------------------
|
--------------------------------------------------------------------------------
|
||||||
|
- 首先创建一个 Group 节点(type="Group", minimized=true),用于包含所有 create_resource 节点
|
||||||
- 遍历所有 reagent,按 slot 去重,为每个唯一的 slot 创建一个板子
|
- 遍历所有 reagent,按 slot 去重,为每个唯一的 slot 创建一个板子
|
||||||
|
- 所有 create_resource 节点的 parent_uuid 指向 Group 节点,minimized=true
|
||||||
- 生成参数:
|
- 生成参数:
|
||||||
res_id: plate_slot_{slot}
|
res_id: plate_slot_{slot}
|
||||||
device_id: /PRCXI
|
device_id: /PRCXI
|
||||||
@@ -29,11 +31,13 @@
|
|||||||
- 输出端口: labware(用于连接 set_liquid_from_plate)
|
- 输出端口: labware(用于连接 set_liquid_from_plate)
|
||||||
- 控制流: create_resource 之间通过 ready 端口串联
|
- 控制流: create_resource 之间通过 ready 端口串联
|
||||||
|
|
||||||
示例: slot=1, slot=4 -> 创建 2 个 create_resource 节点
|
示例: slot=1, slot=4 -> 创建 1 个 Group + 2 个 create_resource 节点
|
||||||
|
|
||||||
第二步: 为每个 reagent 创建 set_liquid_from_plate 节点(设置液体)
|
第二步: 为每个 reagent 创建 set_liquid_from_plate 节点(设置液体)
|
||||||
--------------------------------------------------------------------------------
|
--------------------------------------------------------------------------------
|
||||||
|
- 首先创建一个 Group 节点(type="Group", minimized=true),用于包含所有 set_liquid_from_plate 节点
|
||||||
- 遍历所有 reagent,为每个试剂创建 set_liquid_from_plate 节点
|
- 遍历所有 reagent,为每个试剂创建 set_liquid_from_plate 节点
|
||||||
|
- 所有 set_liquid_from_plate 节点的 parent_uuid 指向 Group 节点,minimized=true
|
||||||
- 生成参数:
|
- 生成参数:
|
||||||
plate: [](通过连接传递,来自 create_resource 的 labware)
|
plate: [](通过连接传递,来自 create_resource 的 labware)
|
||||||
well_names: ["A1", "A3", "A5"](来自 reagent 的 well 数组)
|
well_names: ["A1", "A3", "A5"](来自 reagent 的 well 数组)
|
||||||
@@ -56,7 +60,11 @@
|
|||||||
==================== 连接关系图 ====================
|
==================== 连接关系图 ====================
|
||||||
|
|
||||||
控制流 (ready 端口串联):
|
控制流 (ready 端口串联):
|
||||||
create_resource_1 -> create_resource_2 -> ... -> set_liquid_1 -> set_liquid_2 -> ... -> transfer_liquid_1 -> transfer_liquid_2 -> ...
|
- create_resource 之间: 无 ready 连接
|
||||||
|
- set_liquid_from_plate 之间: 无 ready 连接
|
||||||
|
- create_resource 与 set_liquid_from_plate 之间: 无 ready 连接
|
||||||
|
- transfer_liquid 之间: 通过 ready 端口串联
|
||||||
|
transfer_liquid_1 -> transfer_liquid_2 -> transfer_liquid_3 -> ...
|
||||||
|
|
||||||
物料流:
|
物料流:
|
||||||
[create_resource] --labware--> [set_liquid_from_plate] --output_wells--> [transfer_liquid] --sources_out/targets_out--> [下一个 transfer_liquid]
|
[create_resource] --labware--> [set_liquid_from_plate] --output_wells--> [transfer_liquid] --sources_out/targets_out--> [下一个 transfer_liquid]
|
||||||
@@ -76,6 +84,13 @@ transfer_liquid:
|
|||||||
输入: sources -> sources_identifier, targets -> targets_identifier
|
输入: sources -> sources_identifier, targets -> targets_identifier
|
||||||
输出: sources -> sources_out, targets -> targets_out
|
输出: sources -> sources_out, targets -> targets_out
|
||||||
|
|
||||||
|
==================== 设备名配置 (device_name) ====================
|
||||||
|
|
||||||
|
每个节点都有 device_name 字段,指定在哪个设备上执行:
|
||||||
|
- create_resource: device_name = "host_node"(固定)
|
||||||
|
- set_liquid_from_plate: device_name = "PRCXI"(可配置,见 DEVICE_NAME_DEFAULT)
|
||||||
|
- transfer_liquid 等动作: device_name = "PRCXI"(可配置,见 DEVICE_NAME_DEFAULT)
|
||||||
|
|
||||||
==================== 校验规则 ====================
|
==================== 校验规则 ====================
|
||||||
|
|
||||||
- 检查 sources/targets 是否在 reagent 中定义
|
- 检查 sources/targets 是否在 reagent 中定义
|
||||||
@@ -97,6 +112,13 @@ Json = Dict[str, Any]
|
|||||||
|
|
||||||
# ==================== 默认配置 ====================
|
# ==================== 默认配置 ====================
|
||||||
|
|
||||||
|
# 设备名配置
|
||||||
|
DEVICE_NAME_HOST = "host_node" # create_resource 固定在 host_node 上执行
|
||||||
|
DEVICE_NAME_DEFAULT = "PRCXI" # transfer_liquid, set_liquid_from_plate 等动作的默认设备名
|
||||||
|
|
||||||
|
# 节点类型
|
||||||
|
NODE_TYPE_DEFAULT = "ILab" # 所有节点的默认类型
|
||||||
|
|
||||||
# create_resource 节点默认参数
|
# create_resource 节点默认参数
|
||||||
CREATE_RESOURCE_DEFAULTS = {
|
CREATE_RESOURCE_DEFAULTS = {
|
||||||
"device_id": "/PRCXI",
|
"device_id": "/PRCXI",
|
||||||
@@ -340,14 +362,16 @@ def build_protocol_graph(
|
|||||||
protocol_steps: List[Dict[str, Any]],
|
protocol_steps: List[Dict[str, Any]],
|
||||||
workstation_name: str,
|
workstation_name: str,
|
||||||
action_resource_mapping: Optional[Dict[str, str]] = None,
|
action_resource_mapping: Optional[Dict[str, str]] = None,
|
||||||
|
labware_defs: Optional[List[Dict[str, Any]]] = None,
|
||||||
) -> WorkflowGraph:
|
) -> WorkflowGraph:
|
||||||
"""统一的协议图构建函数,根据设备类型自动选择构建逻辑
|
"""统一的协议图构建函数,根据设备类型自动选择构建逻辑
|
||||||
|
|
||||||
Args:
|
Args:
|
||||||
labware_info: labware 信息字典,格式为 {name: {slot, well, labware, ...}, ...}
|
labware_info: reagent 信息字典,格式为 {name: {slot, well}, ...},用于 set_liquid 和 well 查找
|
||||||
protocol_steps: 协议步骤列表
|
protocol_steps: 协议步骤列表
|
||||||
workstation_name: 工作站名称
|
workstation_name: 工作站名称
|
||||||
action_resource_mapping: action 到 resource_name 的映射字典,可选
|
action_resource_mapping: action 到 resource_name 的映射字典,可选
|
||||||
|
labware_defs: labware 定义列表,格式为 [{"name": "...", "slot": "1", "type": "lab_xxx"}, ...]
|
||||||
"""
|
"""
|
||||||
G = WorkflowGraph()
|
G = WorkflowGraph()
|
||||||
resource_last_writer = {} # reagent_name -> "node_id:port"
|
resource_last_writer = {} # reagent_name -> "node_id:port"
|
||||||
@@ -355,38 +379,51 @@ def build_protocol_graph(
|
|||||||
|
|
||||||
protocol_steps = refactor_data(protocol_steps, action_resource_mapping)
|
protocol_steps = refactor_data(protocol_steps, action_resource_mapping)
|
||||||
|
|
||||||
# ==================== 第一步:按 slot 去重创建 create_resource 节点 ====================
|
# ==================== 第一步:按 slot 创建 create_resource 节点 ====================
|
||||||
# 收集所有唯一的 slot
|
# 创建 Group 节点,包含所有 create_resource 节点
|
||||||
slots_info = {} # slot -> {labware, res_id}
|
group_node_id = str(uuid.uuid4())
|
||||||
for labware_id, item in labware_info.items():
|
G.add_node(
|
||||||
slot = str(item.get("slot", ""))
|
group_node_id,
|
||||||
if slot and slot not in slots_info:
|
name="Resources Group",
|
||||||
res_id = f"plate_slot_{slot}"
|
type="Group",
|
||||||
slots_info[slot] = {
|
parent_uuid="",
|
||||||
"labware": item.get("labware", ""),
|
lab_node_type="Device",
|
||||||
"res_id": res_id,
|
template_name="",
|
||||||
}
|
resource_name="",
|
||||||
|
footer="",
|
||||||
|
minimized=True,
|
||||||
|
param=None,
|
||||||
|
)
|
||||||
|
|
||||||
# 为每个唯一的 slot 创建 create_resource 节点
|
# 直接使用 JSON 中的 labware 定义,每个 slot 一条记录,type 即 class_name
|
||||||
res_index = 0
|
res_index = 0
|
||||||
last_create_resource_id = None
|
for lw in (labware_defs or []):
|
||||||
for slot, info in slots_info.items():
|
slot = str(lw.get("slot", ""))
|
||||||
node_id = str(uuid.uuid4())
|
if not slot or slot in slot_to_create_resource:
|
||||||
res_id = info["res_id"]
|
continue # 跳过空 slot 或已处理的 slot
|
||||||
|
|
||||||
|
lw_name = lw.get("name", f"slot {slot}")
|
||||||
|
lw_type = lw.get("type", CREATE_RESOURCE_DEFAULTS["class_name"])
|
||||||
|
res_id = f"plate_slot_{slot}"
|
||||||
|
|
||||||
res_index += 1
|
res_index += 1
|
||||||
|
node_id = str(uuid.uuid4())
|
||||||
G.add_node(
|
G.add_node(
|
||||||
node_id,
|
node_id,
|
||||||
template_name="create_resource",
|
template_name="create_resource",
|
||||||
resource_name="host_node",
|
resource_name="host_node",
|
||||||
name=f"Plate {res_index}",
|
name=lw_name,
|
||||||
description=f"Create plate on slot {slot}",
|
description=f"Create {lw_name}",
|
||||||
lab_node_type="Labware",
|
lab_node_type="Labware",
|
||||||
footer="create_resource-host_node",
|
footer="create_resource-host_node",
|
||||||
|
device_name=DEVICE_NAME_HOST,
|
||||||
|
type=NODE_TYPE_DEFAULT,
|
||||||
|
parent_uuid=group_node_id,
|
||||||
|
minimized=True,
|
||||||
param={
|
param={
|
||||||
"res_id": res_id,
|
"res_id": res_id,
|
||||||
"device_id": CREATE_RESOURCE_DEFAULTS["device_id"],
|
"device_id": CREATE_RESOURCE_DEFAULTS["device_id"],
|
||||||
"class_name": CREATE_RESOURCE_DEFAULTS["class_name"],
|
"class_name": lw_type,
|
||||||
"parent": CREATE_RESOURCE_DEFAULTS["parent_template"].format(slot=slot),
|
"parent": CREATE_RESOURCE_DEFAULTS["parent_template"].format(slot=slot),
|
||||||
"bind_locations": {"x": 0.0, "y": 0.0, "z": 0.0},
|
"bind_locations": {"x": 0.0, "y": 0.0, "z": 0.0},
|
||||||
"slot_on_deck": slot,
|
"slot_on_deck": slot,
|
||||||
@@ -394,14 +431,23 @@ def build_protocol_graph(
|
|||||||
)
|
)
|
||||||
slot_to_create_resource[slot] = node_id
|
slot_to_create_resource[slot] = node_id
|
||||||
|
|
||||||
# create_resource 之间通过 ready 串联
|
|
||||||
if last_create_resource_id is not None:
|
|
||||||
G.add_edge(last_create_resource_id, node_id, source_port="ready", target_port="ready")
|
|
||||||
last_create_resource_id = node_id
|
|
||||||
|
|
||||||
# ==================== 第二步:为每个 reagent 创建 set_liquid_from_plate 节点 ====================
|
# ==================== 第二步:为每个 reagent 创建 set_liquid_from_plate 节点 ====================
|
||||||
|
# 创建 Group 节点,包含所有 set_liquid_from_plate 节点
|
||||||
|
set_liquid_group_id = str(uuid.uuid4())
|
||||||
|
G.add_node(
|
||||||
|
set_liquid_group_id,
|
||||||
|
name="SetLiquid Group",
|
||||||
|
type="Group",
|
||||||
|
parent_uuid="",
|
||||||
|
lab_node_type="Device",
|
||||||
|
template_name="",
|
||||||
|
resource_name="",
|
||||||
|
footer="",
|
||||||
|
minimized=True,
|
||||||
|
param=None,
|
||||||
|
)
|
||||||
|
|
||||||
set_liquid_index = 0
|
set_liquid_index = 0
|
||||||
last_set_liquid_id = last_create_resource_id # set_liquid_from_plate 连接在 create_resource 之后
|
|
||||||
|
|
||||||
for labware_id, item in labware_info.items():
|
for labware_id, item in labware_info.items():
|
||||||
# 跳过 Tip/Rack 类型
|
# 跳过 Tip/Rack 类型
|
||||||
@@ -430,6 +476,10 @@ def build_protocol_graph(
|
|||||||
description=f"Set liquid: {labware_id}",
|
description=f"Set liquid: {labware_id}",
|
||||||
lab_node_type="Reagent",
|
lab_node_type="Reagent",
|
||||||
footer="set_liquid_from_plate-liquid_handler.prcxi",
|
footer="set_liquid_from_plate-liquid_handler.prcxi",
|
||||||
|
device_name=DEVICE_NAME_DEFAULT,
|
||||||
|
type=NODE_TYPE_DEFAULT,
|
||||||
|
parent_uuid=set_liquid_group_id, # 指向 Group 节点
|
||||||
|
minimized=True, # 折叠显示
|
||||||
param={
|
param={
|
||||||
"plate": [], # 通过连接传递
|
"plate": [], # 通过连接传递
|
||||||
"well_names": wells, # 孔位名数组,如 ["A1", "A3", "A5"]
|
"well_names": wells, # 孔位名数组,如 ["A1", "A3", "A5"]
|
||||||
@@ -438,10 +488,7 @@ def build_protocol_graph(
|
|||||||
},
|
},
|
||||||
)
|
)
|
||||||
|
|
||||||
# ready 连接:上一个节点 -> set_liquid_from_plate
|
# set_liquid_from_plate 之间不需要 ready 连接
|
||||||
if last_set_liquid_id is not None:
|
|
||||||
G.add_edge(last_set_liquid_id, node_id, source_port="ready", target_port="ready")
|
|
||||||
last_set_liquid_id = node_id
|
|
||||||
|
|
||||||
# 物料流:create_resource 的 labware -> set_liquid_from_plate 的 input_plate
|
# 物料流:create_resource 的 labware -> set_liquid_from_plate 的 input_plate
|
||||||
create_res_node_id = slot_to_create_resource.get(slot)
|
create_res_node_id = slot_to_create_resource.get(slot)
|
||||||
@@ -451,7 +498,8 @@ def build_protocol_graph(
|
|||||||
# set_liquid_from_plate 的输出 output_wells 用于连接 transfer_liquid
|
# set_liquid_from_plate 的输出 output_wells 用于连接 transfer_liquid
|
||||||
resource_last_writer[labware_id] = f"{node_id}:output_wells"
|
resource_last_writer[labware_id] = f"{node_id}:output_wells"
|
||||||
|
|
||||||
last_control_node_id = last_set_liquid_id
|
# transfer_liquid 之间通过 ready 串联,从 None 开始
|
||||||
|
last_control_node_id = None
|
||||||
|
|
||||||
# 端口名称映射:JSON 字段名 -> 实际 handle key
|
# 端口名称映射:JSON 字段名 -> 实际 handle key
|
||||||
INPUT_PORT_MAPPING = {
|
INPUT_PORT_MAPPING = {
|
||||||
@@ -544,9 +592,11 @@ def build_protocol_graph(
|
|||||||
if param_key in params:
|
if param_key in params:
|
||||||
params[param_key] = []
|
params[param_key] = []
|
||||||
|
|
||||||
# 更新 step 的 param 和 footer
|
# 更新 step 的 param、footer、device_name 和 type
|
||||||
step_copy = step.copy()
|
step_copy = step.copy()
|
||||||
step_copy["param"] = params
|
step_copy["param"] = params
|
||||||
|
step_copy["device_name"] = DEVICE_NAME_DEFAULT # 动作节点使用默认设备名
|
||||||
|
step_copy["type"] = NODE_TYPE_DEFAULT # 节点类型
|
||||||
|
|
||||||
# 如果有警告,修改 footer 添加警告标记(警告放前面)
|
# 如果有警告,修改 footer 添加警告标记(警告放前面)
|
||||||
if warnings:
|
if warnings:
|
||||||
|
|||||||
@@ -1,16 +1,20 @@
|
|||||||
"""
|
"""
|
||||||
JSON 工作流转换模块
|
JSON 工作流转换模块
|
||||||
|
|
||||||
将 workflow/reagent 格式的 JSON 转换为统一工作流格式。
|
将 workflow/reagent/labware 格式的 JSON 转换为统一工作流格式。
|
||||||
|
|
||||||
输入格式:
|
输入格式:
|
||||||
{
|
{
|
||||||
|
"labware": [
|
||||||
|
{"name": "...", "slot": "1", "type": "lab_xxx"},
|
||||||
|
...
|
||||||
|
],
|
||||||
"workflow": [
|
"workflow": [
|
||||||
{"action": "...", "action_args": {...}},
|
{"action": "...", "action_args": {...}},
|
||||||
...
|
...
|
||||||
],
|
],
|
||||||
"reagent": {
|
"reagent": {
|
||||||
"reagent_name": {"slot": int, "well": [...], "labware": "..."},
|
"reagent_name": {"slot": int, "well": [...]},
|
||||||
...
|
...
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
@@ -245,18 +249,18 @@ def convert_from_json(
|
|||||||
if "workflow" not in json_data or "reagent" not in json_data:
|
if "workflow" not in json_data or "reagent" not in json_data:
|
||||||
raise ValueError(
|
raise ValueError(
|
||||||
"不支持的 JSON 格式。请使用标准格式:\n"
|
"不支持的 JSON 格式。请使用标准格式:\n"
|
||||||
'{"workflow": [{"action": "...", "action_args": {...}}, ...], '
|
'{"labware": [...], "workflow": [...], "reagent": {...}}'
|
||||||
'"reagent": {"name": {"slot": int, "well": [...], "labware": "..."}, ...}}'
|
|
||||||
)
|
)
|
||||||
|
|
||||||
# 提取数据
|
# 提取数据
|
||||||
workflow = json_data["workflow"]
|
workflow = json_data["workflow"]
|
||||||
reagent = json_data["reagent"]
|
reagent = json_data["reagent"]
|
||||||
|
labware_defs = json_data.get("labware", []) # 新的 labware 定义列表
|
||||||
|
|
||||||
# 规范化步骤数据
|
# 规范化步骤数据
|
||||||
protocol_steps = normalize_workflow_steps(workflow)
|
protocol_steps = normalize_workflow_steps(workflow)
|
||||||
|
|
||||||
# reagent 已经是字典格式,直接使用
|
# reagent 已经是字典格式,用于 set_liquid 和 well 数量查找
|
||||||
labware_info = reagent
|
labware_info = reagent
|
||||||
|
|
||||||
# 构建工作流图
|
# 构建工作流图
|
||||||
@@ -265,6 +269,7 @@ def convert_from_json(
|
|||||||
protocol_steps=protocol_steps,
|
protocol_steps=protocol_steps,
|
||||||
workstation_name=workstation_name,
|
workstation_name=workstation_name,
|
||||||
action_resource_mapping=ACTION_RESOURCE_MAPPING,
|
action_resource_mapping=ACTION_RESOURCE_MAPPING,
|
||||||
|
labware_defs=labware_defs,
|
||||||
)
|
)
|
||||||
|
|
||||||
# 校验句柄配置
|
# 校验句柄配置
|
||||||
|
|||||||
@@ -41,6 +41,7 @@ def upload_workflow(
|
|||||||
workflow_name: Optional[str] = None,
|
workflow_name: Optional[str] = None,
|
||||||
tags: Optional[List[str]] = None,
|
tags: Optional[List[str]] = None,
|
||||||
published: bool = False,
|
published: bool = False,
|
||||||
|
description: str = "",
|
||||||
) -> Dict[str, Any]:
|
) -> Dict[str, Any]:
|
||||||
"""
|
"""
|
||||||
上传工作流到服务器
|
上传工作流到服务器
|
||||||
@@ -56,6 +57,7 @@ def upload_workflow(
|
|||||||
workflow_name: 工作流名称,如果不提供则从文件中读取或使用文件名
|
workflow_name: 工作流名称,如果不提供则从文件中读取或使用文件名
|
||||||
tags: 工作流标签列表,默认为空列表
|
tags: 工作流标签列表,默认为空列表
|
||||||
published: 是否发布工作流,默认为False
|
published: 是否发布工作流,默认为False
|
||||||
|
description: 工作流描述,发布时使用
|
||||||
|
|
||||||
Returns:
|
Returns:
|
||||||
Dict: API响应数据
|
Dict: API响应数据
|
||||||
@@ -75,6 +77,14 @@ def upload_workflow(
|
|||||||
print_status(f"工作流文件JSON解析失败: {e}", "error")
|
print_status(f"工作流文件JSON解析失败: {e}", "error")
|
||||||
return {"code": -1, "message": f"JSON解析失败: {e}"}
|
return {"code": -1, "message": f"JSON解析失败: {e}"}
|
||||||
|
|
||||||
|
# 从 JSON 文件中提取 description 和 tags(作为 fallback)
|
||||||
|
if not description and "description" in workflow_data:
|
||||||
|
description = workflow_data["description"]
|
||||||
|
print_status(f"从文件中读取 description", "info")
|
||||||
|
if not tags and "tags" in workflow_data:
|
||||||
|
tags = workflow_data["tags"]
|
||||||
|
print_status(f"从文件中读取 tags: {tags}", "info")
|
||||||
|
|
||||||
# 自动检测并转换格式
|
# 自动检测并转换格式
|
||||||
if not _is_node_link_format(workflow_data):
|
if not _is_node_link_format(workflow_data):
|
||||||
try:
|
try:
|
||||||
@@ -96,6 +106,7 @@ def upload_workflow(
|
|||||||
print_status(f" - 节点数量: {len(nodes)}", "info")
|
print_status(f" - 节点数量: {len(nodes)}", "info")
|
||||||
print_status(f" - 边数量: {len(edges)}", "info")
|
print_status(f" - 边数量: {len(edges)}", "info")
|
||||||
print_status(f" - 标签: {tags or []}", "info")
|
print_status(f" - 标签: {tags or []}", "info")
|
||||||
|
print_status(f" - 描述: {description[:50]}{'...' if len(description) > 50 else ''}", "info")
|
||||||
print_status(f" - 发布状态: {published}", "info")
|
print_status(f" - 发布状态: {published}", "info")
|
||||||
|
|
||||||
# 调用 http_client 上传
|
# 调用 http_client 上传
|
||||||
@@ -107,6 +118,7 @@ def upload_workflow(
|
|||||||
edges=edges,
|
edges=edges,
|
||||||
tags=tags,
|
tags=tags,
|
||||||
published=published,
|
published=published,
|
||||||
|
description=description,
|
||||||
)
|
)
|
||||||
|
|
||||||
if result.get("code") == 0:
|
if result.get("code") == 0:
|
||||||
@@ -131,8 +143,9 @@ def handle_workflow_upload_command(args_dict: Dict[str, Any]) -> None:
|
|||||||
workflow_name = args_dict.get("workflow_name")
|
workflow_name = args_dict.get("workflow_name")
|
||||||
tags = args_dict.get("tags", [])
|
tags = args_dict.get("tags", [])
|
||||||
published = args_dict.get("published", False)
|
published = args_dict.get("published", False)
|
||||||
|
description = args_dict.get("description", "")
|
||||||
|
|
||||||
if workflow_file:
|
if workflow_file:
|
||||||
upload_workflow(workflow_file, workflow_name, tags, published)
|
upload_workflow(workflow_file, workflow_name, tags, published, description)
|
||||||
else:
|
else:
|
||||||
print_status("未指定工作流文件路径,请使用 -f/--workflow_file 参数", "error")
|
print_status("未指定工作流文件路径,请使用 -f/--workflow_file 参数", "error")
|
||||||
|
|||||||
Reference in New Issue
Block a user