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2 Commits

Author SHA1 Message Date
Junhan Chang
f791c1a342 fix filter protocol 2025-08-12 16:48:32 +08:00
Junhan Chang
ea60cbe891 bugfixes on organic protocols 2025-08-12 14:50:01 +08:00
11 changed files with 397 additions and 1391 deletions

View File

@@ -170,12 +170,15 @@
"z": 0
},
"config": {
"volume": 1000.0,
"reagent": "DMF"
"max_volume": 1000.0
},
"data": {
"current_volume": 1000.0,
"reagent_name": "DMF"
"liquids": [
{
"liquid_type": "DMF",
"liquid_volume": 1000.0
}
]
}
},
{
@@ -191,12 +194,15 @@
"z": 0
},
"config": {
"volume": 1000.0,
"reagent": "ethyl_acetate"
"max_volume": 1000.0
},
"data": {
"current_volume": 1000.0,
"reagent_name": "ethyl_acetate"
"liquids": [
{
"liquid_type": "ethyl_acetate",
"liquid_volume": 1000.0
}
]
}
},
{
@@ -212,12 +218,15 @@
"z": 0
},
"config": {
"volume": 1000.0,
"reagent": "hexane"
"max_volume": 1000.0
},
"data": {
"current_volume": 1000.0,
"reagent_name": "hexane"
"liquids": [
{
"liquid_type": "hexane",
"liquid_volume": 1000.0
}
]
}
},
{
@@ -233,12 +242,15 @@
"z": 0
},
"config": {
"volume": 1000.0,
"reagent": "methanol"
"max_volume": 1000.0
},
"data": {
"current_volume": 1000.0,
"reagent_name": "methanol"
"liquids": [
{
"liquid_type": "methanol",
"liquid_volume": 1000.0
}
]
}
},
{
@@ -254,12 +266,15 @@
"z": 0
},
"config": {
"volume": 1000.0,
"reagent": "water"
"max_volume": 1000.0
},
"data": {
"current_volume": 1000.0,
"reagent_name": "water"
"liquids": [
{
"liquid_type": "water",
"liquid_volume": 1000.0
}
]
}
},
{
@@ -319,15 +334,15 @@
"z": 0
},
"config": {
"volume": 500.0,
"max_volume": 500.0,
"max_temp": 200.0,
"min_temp": -20.0,
"has_stirrer": true,
"has_heater": true
},
"data": {
"current_volume": 0.0,
"current_temp": 25.0
"liquids": [
]
}
},
{
@@ -404,10 +419,11 @@
"z": 0
},
"config": {
"volume": 2000.0
"max_volume": 2000.0
},
"data": {
"current_volume": 0.0
"liquids": [
]
}
},
{
@@ -423,10 +439,11 @@
"z": 0
},
"config": {
"volume": 2000.0
"max_volume": 2000.0
},
"data": {
"current_volume": 0.0
"liquids": [
]
}
},
{
@@ -632,10 +649,11 @@
"z": 0
},
"config": {
"volume": 250.0
"max_volume": 250.0
},
"data": {
"current_volume": 0.0
"liquids": [
]
}
},
{
@@ -651,10 +669,11 @@
"z": 0
},
"config": {
"volume": 250.0
"max_volume": 250.0
},
"data": {
"current_volume": 0.0
"liquids": [
]
}
},
{
@@ -670,10 +689,11 @@
"z": 0
},
"config": {
"volume": 250.0
"max_volume": 250.0
},
"data": {
"current_volume": 0.0
"liquids": [
]
}
},
{
@@ -712,7 +732,7 @@
"z": 0
},
"config": {
"volume": 500.0,
"max_volume": 500.0,
"reagent": "sodium_chloride",
"physical_state": "solid"
},

View File

@@ -160,8 +160,8 @@ def generate_filter_protocol(
# 使用pump protocol转移液体到过滤器
transfer_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=vessel_id, # 🔧 使用 vessel_id
to_vessel=filter_device,
from_vessel={"id": vessel_id}, # 🔧 使用 vessel_id
to_vessel={"id": filter_device},
volume=0.0, # 转移所有液体
amount="",
time=0.0,
@@ -212,8 +212,8 @@ def generate_filter_protocol(
# 构建过滤动作参数
debug_print(" ⚙️ 构建过滤参数...")
filter_kwargs = {
"vessel": filter_device, # 过滤器设备
"filtrate_vessel": filtrate_vessel_id, # 滤液容器(可能为空)
"vessel": {"id": filter_device}, # 过滤器设备
"filtrate_vessel": {"id": filtrate_vessel_id}, # 滤液容器(可能为空)
"stir": kwargs.get("stir", False),
"stir_speed": kwargs.get("stir_speed", 0.0),
"temp": kwargs.get("temp", 25.0),
@@ -244,7 +244,7 @@ def generate_filter_protocol(
# === 收集滤液(如果需要)===
debug_print("📍 步骤5: 收集滤液... 💧")
if filtrate_vessel:
if filtrate_vessel_id and filtrate_vessel_id not in G.neighbors(filter_device):
debug_print(f" 🧪 收集滤液: {filter_device}{filtrate_vessel_id} 💧")
try:

File diff suppressed because it is too large Load Diff

View File

@@ -125,6 +125,29 @@ def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
"""
debug_print(f"🔍 正在查找溶剂 '{solvent}' 的容器... 🧪")
# 第四步:通过数据中的试剂信息匹配
debug_print(" 🧪 步骤1: 数据试剂信息匹配...")
for node_id in G.nodes():
debug_print(f"查找 id {node_id}, type={G.nodes[node_id].get('type')}, data={G.nodes[node_id].get('data', {})} 的容器...")
if G.nodes[node_id].get('type') == 'container':
vessel_data = G.nodes[node_id].get('data', {})
# 检查 data 中的 reagent_name 字段
reagent_name = vessel_data.get('reagent_name', '').lower()
if reagent_name and solvent.lower() == reagent_name:
debug_print(f" 🎉 通过data.reagent_name匹配找到容器: {node_id} (试剂: {reagent_name}) ✨")
return node_id
# 检查 data 中的液体信息
liquids = vessel_data.get('liquid', []) or vessel_data.get('liquids', [])
for liquid in liquids:
if isinstance(liquid, dict):
liquid_type = (liquid.get('liquid_type') or liquid.get('name', '')).lower()
if solvent.lower() == liquid_type or solvent.lower() in liquid_type:
debug_print(f" 🎉 通过液体类型匹配找到容器: {node_id} (液体类型: {liquid_type}) ✨")
return node_id
# 构建可能的容器名称
possible_names = [
f"flask_{solvent}",
@@ -140,14 +163,14 @@ def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
debug_print(f"📋 候选容器名称: {possible_names[:3]}... (共{len(possible_names)}个) 📝")
# 第一步:通过容器名称匹配
debug_print(" 🎯 步骤1: 精确名称匹配...")
debug_print(" 🎯 步骤2: 精确名称匹配...")
for vessel_name in possible_names:
if vessel_name in G.nodes():
debug_print(f" 🎉 通过名称匹配找到容器: {vessel_name}")
return vessel_name
# 第二步通过模糊匹配节点ID和名称
debug_print(" 🔍 步骤2: 模糊名称匹配...")
debug_print(" 🔍 步骤3: 模糊名称匹配...")
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
node_name = G.nodes[node_id].get('name', '').lower()
@@ -157,7 +180,7 @@ def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
return node_id
# 第三步:通过配置中的试剂信息匹配
debug_print(" 🧪 步骤3: 配置试剂信息匹配...")
debug_print(" 🧪 步骤4: 配置试剂信息匹配...")
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
# 检查 config 中的 reagent 字段
@@ -168,28 +191,6 @@ def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
debug_print(f" 🎉 通过config.reagent匹配找到容器: {node_id} (试剂: {config_reagent}) ✨")
return node_id
# 第四步:通过数据中的试剂信息匹配
debug_print(" 🧪 步骤4: 数据试剂信息匹配...")
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
vessel_data = G.nodes[node_id].get('data', {})
# 检查 data 中的 reagent_name 字段
reagent_name = vessel_data.get('reagent_name', '').lower()
if reagent_name and solvent.lower() == reagent_name:
debug_print(f" 🎉 通过data.reagent_name匹配找到容器: {node_id} (试剂: {reagent_name}) ✨")
return node_id
# 检查 data 中的液体信息
liquids = vessel_data.get('liquid', [])
for liquid in liquids:
if isinstance(liquid, dict):
liquid_type = (liquid.get('liquid_type') or liquid.get('name', '')).lower()
if solvent.lower() in liquid_type:
debug_print(f" 🎉 通过液体类型匹配找到容器: {node_id} (液体类型: {liquid_type}) ✨")
return node_id
# 第五步:部分匹配(如果前面都没找到)
debug_print(" 🔍 步骤5: 部分匹配...")
for node_id in G.nodes():

View File

@@ -3,6 +3,8 @@ import logging
import time as time_module
from typing import Dict, Any, Optional
from unilabos.compile.utils.vessel_parser import get_vessel
class VirtualFilter:
"""Virtual filter device - 完全按照 Filter.action 规范 🌊"""
@@ -40,7 +42,6 @@ class VirtualFilter:
"progress": 0.0, # Filter.action feedback
"current_temp": 25.0, # Filter.action feedback
"filtered_volume": 0.0, # Filter.action feedback
"current_status": "Ready for filtration", # Filter.action feedback
"message": "Ready for filtration"
})
@@ -52,9 +53,7 @@ class VirtualFilter:
self.logger.info(f"🧹 清理虚拟过滤器 {self.device_id} 🔚")
self.data.update({
"status": "Offline",
"current_status": "System offline",
"message": "System offline"
"status": "Offline"
})
self.logger.info(f"✅ 过滤器 {self.device_id} 清理完成 💤")
@@ -62,8 +61,8 @@ class VirtualFilter:
async def filter(
self,
vessel: str,
filtrate_vessel: str = "",
vessel: dict,
filtrate_vessel: dict = {},
stir: bool = False,
stir_speed: float = 300.0,
temp: float = 25.0,
@@ -71,6 +70,8 @@ class VirtualFilter:
volume: float = 0.0
) -> bool:
"""Execute filter action - 完全按照 Filter.action 参数 🌊"""
vessel_id, _ = get_vessel(vessel)
filtrate_vessel_id, _ = get_vessel(filtrate_vessel) if filtrate_vessel else (f"{vessel_id}_filtrate", {})
# 🔧 新增:温度自动调整
original_temp = temp
@@ -81,7 +82,7 @@ class VirtualFilter:
temp = 4.0 # 小于4度自动设置为4度
self.logger.info(f"🌡️ 温度自动调整: {original_temp}°C → {temp}°C (最低温度) ❄️")
self.logger.info(f"🌊 开始过滤操作: {vessel}{filtrate_vessel} 🚰")
self.logger.info(f"🌊 开始过滤操作: {vessel_id}{filtrate_vessel_id} 🚰")
self.logger.info(f" 🌪️ 搅拌: {stir} ({stir_speed} RPM)")
self.logger.info(f" 🌡️ 温度: {temp}°C")
self.logger.info(f" 💧 体积: {volume}mL")
@@ -93,7 +94,6 @@ class VirtualFilter:
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"Error: 温度超出范围 ⚠️",
"current_status": f"Error: 温度超出范围 ⚠️",
"message": error_msg
})
return False
@@ -103,7 +103,6 @@ class VirtualFilter:
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"Error: 搅拌速度超出范围 ⚠️",
"current_status": f"Error: 搅拌速度超出范围 ⚠️",
"message": error_msg
})
return False
@@ -112,8 +111,7 @@ class VirtualFilter:
error_msg = f"💧 过滤体积 {volume} mL 超出范围 (0-{self._max_volume} mL) ⚠️"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"Error: 体积超出范围 ⚠️",
"current_status": f"Error: 体积超出范围 ⚠️",
"status": f"Error",
"message": error_msg
})
return False
@@ -123,12 +121,11 @@ class VirtualFilter:
self.logger.info(f"🚀 开始过滤 {filter_volume}mL 液体 💧")
self.data.update({
"status": f"🌊 过滤中: {vessel}",
"status": f"Running",
"current_temp": temp,
"filtered_volume": 0.0,
"progress": 0.0,
"current_status": f"🌊 Filtering {vessel}{filtrate_vessel}",
"message": f"🚀 Starting filtration: {vessel}{filtrate_vessel}"
"message": f"🚀 Starting filtration: {vessel_id}{filtrate_vessel_id}"
})
try:
@@ -164,8 +161,7 @@ class VirtualFilter:
"progress": progress, # Filter.action feedback
"current_temp": temp, # Filter.action feedback
"filtered_volume": current_filtered, # Filter.action feedback
"current_status": f"🌊 Filtering: {progress:.1f}% complete", # Filter.action feedback
"status": status_msg,
"status": "Running",
"message": f"🌊 Filtering: {progress:.1f}% complete, {current_filtered:.1f}mL filtered"
})
@@ -190,11 +186,10 @@ class VirtualFilter:
"progress": 100.0, # Filter.action feedback
"current_temp": final_temp, # Filter.action feedback
"filtered_volume": filter_volume, # Filter.action feedback
"current_status": f"✅ Filtration completed: {filter_volume}mL", # Filter.action feedback
"message": f"✅ Filtration completed: {filter_volume}mL filtered from {vessel}"
"message": f"✅ Filtration completed: {filter_volume}mL filtered from {vessel_id}"
})
self.logger.info(f"🎉 过滤完成! 💧 {filter_volume}mL 从 {vessel} 过滤到 {filtrate_vessel}")
self.logger.info(f"🎉 过滤完成! 💧 {filter_volume}mL 从 {vessel_id} 过滤到 {filtrate_vessel_id}")
self.logger.info(f"📊 最终状态: 温度 {final_temp}°C | 进度 100% | 体积 {filter_volume}mL 🏁")
return True
@@ -202,8 +197,7 @@ class VirtualFilter:
error_msg = f"过滤过程中发生错误: {str(e)} 💥"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 过滤错误: {str(e)}",
"current_status": f"❌ Filtration failed: {str(e)}",
"status": f"Error",
"message": f"❌ Filtration failed: {str(e)}"
})
return False
@@ -228,11 +222,6 @@ class VirtualFilter:
"""Filter.action feedback 字段 💧"""
return self.data.get("filtered_volume", 0.0)
@property
def current_status(self) -> str:
"""Filter.action feedback 字段 📋"""
return self.data.get("current_status", "")
@property
def message(self) -> str:
return self.data.get("message", "")

View File

@@ -21,19 +21,6 @@ class VirtualMultiwayValve:
self._current_position = 0 # 默认在0号位transfer pump位置
self._target_position = 0
# 位置映射说明
self.position_map = {
0: "transfer_pump", # 0号位连接转移泵
1: "port_1", # 1号位
2: "port_2", # 2号位
3: "port_3", # 3号位
4: "port_4", # 4号位
5: "port_5", # 5号位
6: "port_6", # 6号位
7: "port_7", # 7号位
8: "port_8" # 8号位
}
print(f"🔄 === 虚拟多通阀门已创建 === ✨")
print(f"🎯 端口: {port} | 📊 位置范围: 0-{self.max_positions} | 🏠 初始位置: 0 (transfer_pump)")
self.logger.info(f"🔧 多通阀门初始化: 端口={port}, 最大位置={self.max_positions}")
@@ -60,7 +47,7 @@ class VirtualMultiwayValve:
def get_current_port(self) -> str:
"""获取当前连接的端口名称 🔌"""
return self.position_map.get(self._current_position, "unknown")
return self._current_position
def set_position(self, command: Union[int, str]):
"""
@@ -115,7 +102,7 @@ class VirtualMultiwayValve:
old_position = self._current_position
old_port = self.get_current_port()
self.logger.info(f"🔄 阀门切换: {old_position}({old_port}) → {pos}({self.position_map.get(pos, 'unknown')}) {pos_emoji}")
self.logger.info(f"🔄 阀门切换: {old_position}({old_port}) → {pos} {pos_emoji}")
self._status = "Busy"
self._valve_state = "Moving"
@@ -190,6 +177,17 @@ class VirtualMultiwayValve:
"""获取阀门位置 - 兼容性方法 📍"""
return self._current_position
def set_valve_position(self, command: Union[int, str]):
"""
设置阀门位置 - 兼容pump_protocol调用 🎯
这是set_position的别名方法用于兼容pump_protocol.py
Args:
command: 目标位置 (0-8) 或位置字符串
"""
# 删除debug日志self.logger.debug(f"🎯 兼容性调用: set_valve_position({command})")
return self.set_position(command)
def is_at_position(self, position: int) -> bool:
"""检查是否在指定位置 🎯"""
result = self._current_position == position
@@ -210,17 +208,6 @@ class VirtualMultiwayValve:
# 删除debug日志self.logger.debug(f"🔌 端口{port_number}检查: {port_status} (当前位置: {self._current_position})")
return result
def get_available_positions(self) -> list:
"""获取可用位置列表 📋"""
positions = list(range(0, self.max_positions + 1))
# 删除debug日志self.logger.debug(f"📋 可用位置: {positions}")
return positions
def get_available_ports(self) -> Dict[int, str]:
"""获取可用端口映射 🗺️"""
# 删除debug日志self.logger.debug(f"🗺️ 端口映射: {self.position_map}")
return self.position_map.copy()
def reset(self):
"""重置阀门到transfer pump位置0号位🔄"""
self.logger.info(f"🔄 重置阀门到泵位置...")
@@ -259,17 +246,6 @@ class VirtualMultiwayValve:
return f"🔄 VirtualMultiwayValve({status_emoji} 位置: {self._current_position}/{self.max_positions}, 端口: {current_port}, 状态: {self._status})"
def set_valve_position(self, command: Union[int, str]):
"""
设置阀门位置 - 兼容pump_protocol调用 🎯
这是set_position的别名方法用于兼容pump_protocol.py
Args:
command: 目标位置 (0-8) 或位置字符串
"""
# 删除debug日志self.logger.debug(f"🎯 兼容性调用: set_valve_position({command})")
return self.set_position(command)
# 使用示例
if __name__ == "__main__":
@@ -291,10 +267,6 @@ if __name__ == "__main__":
print(f"\n🔌 切换到2号位: {valve.set_to_port(2)}")
print(f"📍 当前状态: {valve}")
# 显示所有可用位置
print(f"\n📋 可用位置: {valve.get_available_positions()}")
print(f"🗺️ 端口映射: {valve.get_available_ports()}")
# 测试切换功能
print(f"\n🔄 智能切换测试:")
print(f"当前位置: {valve._current_position}")

View File

@@ -99,8 +99,8 @@ class VirtualRotavap:
self.logger.error(f"❌ 时间参数类型无效: {type(time)}使用默认值180.0秒")
time = 180.0
# 确保time是float类型
time = float(time)
# 确保time是float类型; 并加速
time = float(time) / 10.0
# 🔧 简化处理如果vessel就是设备自己直接操作
if vessel == self.device_id:

View File

@@ -48,20 +48,6 @@ class VirtualSolenoidValve:
"""获取阀门位置状态"""
return "OPEN" if self._is_open else "CLOSED"
@property
def state(self) -> dict:
"""获取阀门完整状态"""
return {
"device_id": self.device_id,
"port": self.port,
"voltage": self.voltage,
"response_time": self.response_time,
"is_open": self._is_open,
"valve_state": self._valve_state,
"status": self._status,
"position": self.valve_position
}
async def set_valve_position(self, command: str = None, **kwargs):
"""
设置阀门位置 - ROS动作接口

View File

@@ -2161,8 +2161,6 @@ virtual_multiway_valve:
type: SendCmd
module: unilabos.devices.virtual.virtual_multiway_valve:VirtualMultiwayValve
status_types:
available_ports: dict
available_positions: list
current_port: str
current_position: int
flow_path: str
@@ -2268,10 +2266,6 @@ virtual_multiway_valve:
type: object
data:
properties:
available_ports:
type: object
available_positions:
type: array
current_port:
type: string
current_position:
@@ -2293,8 +2287,6 @@ virtual_multiway_valve:
- target_position
- current_port
- valve_position
- available_positions
- available_ports
- flow_path
type: object
version: 1.0.0
@@ -3775,7 +3767,6 @@ virtual_solenoid_valve:
module: unilabos.devices.virtual.virtual_solenoid_valve:VirtualSolenoidValve
status_types:
is_open: bool
state: dict
status: str
valve_position: str
valve_state: str
@@ -3813,8 +3804,6 @@ virtual_solenoid_valve:
properties:
is_open:
type: boolean
state:
type: object
status:
type: string
valve_position:
@@ -3826,7 +3815,6 @@ virtual_solenoid_valve:
- valve_state
- is_open
- valve_position
- state
type: object
version: 1.0.0
virtual_solid_dispenser:

View File

@@ -395,6 +395,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
if "data" not in resource:
resource["data"] = {}
resource["data"].update(json.loads(container_instance.data))
request.resources[0].name = resource["name"]
logger.info(f"更新物料{container_query_dict['name']}的数据{resource['data']} dict")
else:
logger.info(f"更新物料{container_query_dict['name']}出现不支持的数据类型{type(resource)} {resource}")

View File

@@ -404,13 +404,14 @@ class HostNode(BaseROS2DeviceNode):
class_name: str,
parent: str,
bind_locations: Point,
liquid_input_slot: list[int],
liquid_type: list[str],
liquid_volume: list[int],
slot_on_deck: str,
liquid_input_slot: list[int] = [],
liquid_type: list[str] = [],
liquid_volume: list[int] = [],
slot_on_deck: str = "",
):
# 暂不支持多对同名父子同时存在
res_creation_input = {
"id": res_id.split("/")[-1],
"name": res_id.split("/")[-1],
"class": class_name,
"parent": parent.split("/")[-1],
@@ -424,8 +425,10 @@ class HostNode(BaseROS2DeviceNode):
res_creation_input.update(
{
"data": {
"liquids": [{
"liquid_type": liquid_type[0] if liquid_type else None,
"liquid_volume": liquid_volume[0] if liquid_volume else None,
}]
}
}
)