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1 Commits

Author SHA1 Message Date
Andy6M
78729ef86c feat(workstation): update bioyond config migration and coin cell material search logic
- Migrate bioyond_cell config to JSON structure and remove global variable dependencies
- Implement material search confirmation dialog auto-handling
- Add documentation: 20260113_物料搜寻确认弹窗自动处理功能.md and 20260113_配置迁移修改总结.md
2026-01-14 09:55:25 +08:00
56 changed files with 7923 additions and 6628 deletions

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@@ -0,0 +1,9 @@
@echo off
setlocal enabledelayedexpansion
REM upgrade pip
"%PREFIX%\python.exe" -m pip install --upgrade pip
REM install extra deps
"%PREFIX%\python.exe" -m pip install paho-mqtt opentrons_shared_data
"%PREFIX%\python.exe" -m pip install git+https://github.com/Xuwznln/pylabrobot.git

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@@ -0,0 +1,9 @@
#!/usr/bin/env bash
set -euxo pipefail
# make sure pip is available
"$PREFIX/bin/python" -m pip install --upgrade pip
# install extra deps
"$PREFIX/bin/python" -m pip install paho-mqtt opentrons_shared_data
"$PREFIX/bin/python" -m pip install git+https://github.com/Xuwznln/pylabrobot.git

26
.cursorignore Normal file
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@@ -0,0 +1,26 @@
.conda
# .github
.idea
# .vscode
output
pylabrobot_repo
recipes
scripts
service
temp
# unilabos/test
# unilabos/app/web
unilabos/device_mesh
unilabos_data
unilabos_msgs
unilabos.egg-info
CONTRIBUTORS
# LICENSE
MANIFEST.in
pyrightconfig.json
# README.md
# README_zh.md
setup.py
setup.cfg
.gitattrubutes
**/__pycache__

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@@ -1,19 +0,0 @@
version: 2
updates:
# GitHub Actions
- package-ecosystem: "github-actions"
directory: "/"
target-branch: "dev"
schedule:
interval: "weekly"
day: "monday"
time: "06:00"
open-pull-requests-limit: 5
reviewers:
- "msgcenterpy-team"
labels:
- "dependencies"
- "github-actions"
commit-message:
prefix: "ci"
include: "scope"

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@@ -1,52 +0,0 @@
name: CI Check
on:
pull_request:
branches: [main, dev]
jobs:
registry-check:
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
miniconda-version: 'latest'
channels: conda-forge,robostack-staging,uni-lab,defaults
channel-priority: strict
activate-environment: check-env
auto-activate-base: false
auto-update-conda: false
show-channel-urls: true
- name: Install minimal ROS dependencies
run: |
conda install ros-humble-ros-core ros-humble-std-msgs ros-humble-geometry-msgs ros-humble-control-msgs -c robostack-staging -c conda-forge
- name: Install unilabos-msgs and project
run: |
conda install ros-humble-unilabos-msgs -c uni-lab -c robostack-staging -c conda-forge
pip install -e .
- name: Run check mode (complete_registry)
run: |
python -m unilabos --check_mode --skip_env_check
- name: Check for uncommitted changes
run: |
if ! git diff --exit-code; then
echo "::error::检测到文件变化!请先在本地运行 'python -m unilabos --complete_registry' 并提交变更"
echo "变化的文件:"
git diff --name-only
exit 1
fi
echo "检查通过:无文件变化"

1
.gitignore vendored
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@@ -4,7 +4,6 @@ temp/
output/ output/
unilabos_data/ unilabos_data/
pyrightconfig.json pyrightconfig.json
.cursorignore
## Python ## Python
# Byte-compiled / optimized / DLL files # Byte-compiled / optimized / DLL files

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@@ -161,12 +161,6 @@ def parse_args():
default=False, default=False,
help="Complete registry information", help="Complete registry information",
) )
parser.add_argument(
"--check_mode",
action="store_true",
default=False,
help="Run in check mode for CI: validates registry imports and ensures no file changes",
)
parser.add_argument( parser.add_argument(
"--no_update_feedback", "--no_update_feedback",
action="store_true", action="store_true",
@@ -320,12 +314,6 @@ def main():
BasicConfig.machine_name = machine_name BasicConfig.machine_name = machine_name
BasicConfig.vis_2d_enable = args_dict["2d_vis"] BasicConfig.vis_2d_enable = args_dict["2d_vis"]
# Check mode 处理
check_mode = args_dict.get("check_mode", False)
BasicConfig.check_mode = check_mode
if check_mode:
print_status("Check mode 启用,将进行 complete_registry 检查", "info")
from unilabos.resources.graphio import ( from unilabos.resources.graphio import (
read_node_link_json, read_node_link_json,
read_graphml, read_graphml,
@@ -343,14 +331,10 @@ def main():
# 显示启动横幅 # 显示启动横幅
print_unilab_banner(args_dict) print_unilab_banner(args_dict)
# 注册表 - check_mode 时强制启用 complete_registry # 注册表
complete_registry = args_dict.get("complete_registry", False) or check_mode lab_registry = build_registry(
lab_registry = build_registry(args_dict["registry_path"], complete_registry, BasicConfig.upload_registry) args_dict["registry_path"], args_dict.get("complete_registry", False), BasicConfig.upload_registry
)
# Check mode: complete_registry 完成后直接退出git diff 检测由 CI workflow 执行
if check_mode:
print_status("Check mode: complete_registry 完成,退出", "info")
os._exit(0)
if BasicConfig.upload_registry: if BasicConfig.upload_registry:
# 设备注册到服务端 - 需要 ak 和 sk # 设备注册到服务端 - 需要 ak 和 sk

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@@ -58,14 +58,14 @@ class JobResultStore:
feedback=feedback or {}, feedback=feedback or {},
timestamp=time.time(), timestamp=time.time(),
) )
logger.trace(f"[JobResultStore] Stored result for job {job_id[:8]}, status={status}") logger.debug(f"[JobResultStore] Stored result for job {job_id[:8]}, status={status}")
def get_and_remove(self, job_id: str) -> Optional[JobResult]: def get_and_remove(self, job_id: str) -> Optional[JobResult]:
"""获取并删除任务结果""" """获取并删除任务结果"""
with self._results_lock: with self._results_lock:
result = self._results.pop(job_id, None) result = self._results.pop(job_id, None)
if result: if result:
logger.trace(f"[JobResultStore] Retrieved and removed result for job {job_id[:8]}") logger.debug(f"[JobResultStore] Retrieved and removed result for job {job_id[:8]}")
return result return result
def get_result(self, job_id: str) -> Optional[JobResult]: def get_result(self, job_id: str) -> Optional[JobResult]:

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@@ -154,7 +154,7 @@ class DeviceActionManager:
job_info.set_ready_timeout(10) # 设置10秒超时 job_info.set_ready_timeout(10) # 设置10秒超时
self.active_jobs[device_key] = job_info self.active_jobs[device_key] = job_info
job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name) job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name)
logger.trace(f"[DeviceActionManager] Job {job_log} can start immediately for {device_key}") logger.info(f"[DeviceActionManager] Job {job_log} can start immediately for {device_key}")
return True return True
def start_job(self, job_id: str) -> bool: def start_job(self, job_id: str) -> bool:
@@ -210,9 +210,8 @@ class DeviceActionManager:
job_info.update_timestamp() job_info.update_timestamp()
# 从all_jobs中移除已结束的job # 从all_jobs中移除已结束的job
del self.all_jobs[job_id] del self.all_jobs[job_id]
# job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name) job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name)
# logger.debug(f"[DeviceActionManager] Job {job_log} ended for {device_key}") logger.info(f"[DeviceActionManager] Job {job_log} ended for {device_key}")
pass
else: else:
job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name) job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name)
logger.warning(f"[DeviceActionManager] Job {job_log} was not active for {device_key}") logger.warning(f"[DeviceActionManager] Job {job_log} was not active for {device_key}")
@@ -228,7 +227,7 @@ class DeviceActionManager:
next_job_log = format_job_log( next_job_log = format_job_log(
next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name
) )
logger.trace(f"[DeviceActionManager] Next job {next_job_log} can start for {device_key}") logger.info(f"[DeviceActionManager] Next job {next_job_log} can start for {device_key}")
return next_job return next_job
return None return None
@@ -269,7 +268,7 @@ class DeviceActionManager:
# 从all_jobs中移除 # 从all_jobs中移除
del self.all_jobs[job_id] del self.all_jobs[job_id]
job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name) job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name)
logger.trace(f"[DeviceActionManager] Active job {job_log} cancelled for {device_key}") logger.info(f"[DeviceActionManager] Active job {job_log} cancelled for {device_key}")
# 启动下一个任务 # 启动下一个任务
if device_key in self.device_queues and self.device_queues[device_key]: if device_key in self.device_queues and self.device_queues[device_key]:
@@ -282,7 +281,7 @@ class DeviceActionManager:
next_job_log = format_job_log( next_job_log = format_job_log(
next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name
) )
logger.trace(f"[DeviceActionManager] Next job {next_job_log} can start after cancel") logger.info(f"[DeviceActionManager] Next job {next_job_log} can start after cancel")
return True return True
# 如果是排队中的任务 # 如果是排队中的任务
@@ -296,7 +295,7 @@ class DeviceActionManager:
job_log = format_job_log( job_log = format_job_log(
job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name
) )
logger.trace(f"[DeviceActionManager] Queued job {job_log} cancelled for {device_key}") logger.info(f"[DeviceActionManager] Queued job {job_log} cancelled for {device_key}")
return True return True
job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name) job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name)
@@ -566,7 +565,7 @@ class MessageProcessor:
async def _process_message(self, message_type: str, message_data: Dict[str, Any]): async def _process_message(self, message_type: str, message_data: Dict[str, Any]):
"""处理收到的消息""" """处理收到的消息"""
logger.trace(f"[MessageProcessor] Processing message: {message_type}") logger.debug(f"[MessageProcessor] Processing message: {message_type}")
try: try:
if message_type == "pong": if message_type == "pong":
@@ -638,13 +637,13 @@ class MessageProcessor:
await self._send_action_state_response( await self._send_action_state_response(
device_id, action_name, task_id, job_id, "query_action_status", True, 0 device_id, action_name, task_id, job_id, "query_action_status", True, 0
) )
logger.trace(f"[MessageProcessor] Job {job_log} can start immediately") logger.info(f"[MessageProcessor] Job {job_log} can start immediately")
else: else:
# 需要排队 # 需要排队
await self._send_action_state_response( await self._send_action_state_response(
device_id, action_name, task_id, job_id, "query_action_status", False, 10 device_id, action_name, task_id, job_id, "query_action_status", False, 10
) )
logger.trace(f"[MessageProcessor] Job {job_log} queued") logger.info(f"[MessageProcessor] Job {job_log} queued")
# 通知QueueProcessor有新的队列更新 # 通知QueueProcessor有新的队列更新
if self.queue_processor: if self.queue_processor:
@@ -849,7 +848,7 @@ class MessageProcessor:
device_action_groups[key_add].append(item["uuid"]) device_action_groups[key_add].append(item["uuid"])
logger.info( logger.info(
f"[资源同步] 跨站Transfer: {item['uuid'][:8]} from {device_old_id} to {device_id}" f"[MessageProcessor] Resource migrated: {item['uuid'][:8]} from {device_old_id} to {device_id}"
) )
else: else:
# 正常update # 正常update
@@ -864,11 +863,11 @@ class MessageProcessor:
device_action_groups[key] = [] device_action_groups[key] = []
device_action_groups[key].append(item["uuid"]) device_action_groups[key].append(item["uuid"])
logger.trace(f"[资源同步] 动作 {action} 分组数量: {len(device_action_groups)}, 总数量: {len(resource_uuid_list)}") logger.info(f"触发物料更新 {action} 分组数量: {len(device_action_groups)}, 总数量: {len(resource_uuid_list)}")
# 为每个(device_id, action)创建独立的更新线程 # 为每个(device_id, action)创建独立的更新线程
for (device_id, actual_action), items in device_action_groups.items(): for (device_id, actual_action), items in device_action_groups.items():
logger.trace(f"[资源同步] {device_id} 物料动作 {actual_action} 数量: {len(items)}") logger.info(f"设备 {device_id} 物料更新 {actual_action} 数量: {len(items)}")
def _notify_resource_tree(dev_id, act, item_list): def _notify_resource_tree(dev_id, act, item_list):
try: try:
@@ -903,28 +902,28 @@ class MessageProcessor:
async def _handle_request_restart(self, data: Dict[str, Any]): async def _handle_request_restart(self, data: Dict[str, Any]):
""" """
处理重启请求 处理重启请求
当LabGo发送request_restart时执行清理并触发重启 当LabGo发送request_restart时执行清理并触发重启
""" """
reason = data.get("reason", "unknown") reason = data.get("reason", "unknown")
delay = data.get("delay", 2) # 默认延迟2秒 delay = data.get("delay", 2) # 默认延迟2秒
logger.info(f"[MessageProcessor] Received restart request, reason: {reason}, delay: {delay}s") logger.info(f"[MessageProcessor] Received restart request, reason: {reason}, delay: {delay}s")
# 发送确认消息 # 发送确认消息
if self.websocket_client: if self.websocket_client:
await self.websocket_client.send_message({ await self.websocket_client.send_message({
"action": "restart_acknowledged", "action": "restart_acknowledged",
"data": {"reason": reason, "delay": delay} "data": {"reason": reason, "delay": delay}
}) })
# 设置全局重启标志 # 设置全局重启标志
import unilabos.app.main as main_module import unilabos.app.main as main_module
main_module._restart_requested = True main_module._restart_requested = True
main_module._restart_reason = reason main_module._restart_reason = reason
# 延迟后执行清理 # 延迟后执行清理
await asyncio.sleep(delay) await asyncio.sleep(delay)
# 在新线程中执行清理,避免阻塞当前事件循环 # 在新线程中执行清理,避免阻塞当前事件循环
def do_cleanup(): def do_cleanup():
import time import time
@@ -938,7 +937,7 @@ class MessageProcessor:
logger.error("[MessageProcessor] Cleanup failed") logger.error("[MessageProcessor] Cleanup failed")
except Exception as e: except Exception as e:
logger.error(f"[MessageProcessor] Error during cleanup: {e}") logger.error(f"[MessageProcessor] Error during cleanup: {e}")
cleanup_thread = threading.Thread(target=do_cleanup, name="RestartCleanupThread", daemon=True) cleanup_thread = threading.Thread(target=do_cleanup, name="RestartCleanupThread", daemon=True)
cleanup_thread.start() cleanup_thread.start()
logger.info(f"[MessageProcessor] Restart cleanup scheduled") logger.info(f"[MessageProcessor] Restart cleanup scheduled")
@@ -1129,7 +1128,7 @@ class QueueProcessor:
success = self.message_processor.send_message(message) success = self.message_processor.send_message(message)
job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name) job_log = format_job_log(job_info.job_id, job_info.task_id, job_info.device_id, job_info.action_name)
if success: if success:
logger.trace(f"[QueueProcessor] Sent busy/need_more for queued job {job_log}") logger.debug(f"[QueueProcessor] Sent busy/need_more for queued job {job_log}")
else: else:
logger.warning(f"[QueueProcessor] Failed to send busy status for job {job_log}") logger.warning(f"[QueueProcessor] Failed to send busy status for job {job_log}")
@@ -1152,7 +1151,7 @@ class QueueProcessor:
job_info.action_name, job_info.action_name,
) )
logger.trace(f"[QueueProcessor] Job {job_log} completed with status: {status}") logger.info(f"[QueueProcessor] Job {job_log} completed with status: {status}")
# 结束任务,获取下一个可执行的任务 # 结束任务,获取下一个可执行的任务
next_job = self.device_manager.end_job(job_id) next_job = self.device_manager.end_job(job_id)
@@ -1172,8 +1171,8 @@ class QueueProcessor:
}, },
} }
self.message_processor.send_message(message) self.message_processor.send_message(message)
# next_job_log = format_job_log(next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name) next_job_log = format_job_log(next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name)
# logger.debug(f"[QueueProcessor] Notified next job {next_job_log} can start") logger.info(f"[QueueProcessor] Notified next job {next_job_log} can start")
# 立即触发下一轮状态检查 # 立即触发下一轮状态检查
self.notify_queue_update() self.notify_queue_update()
@@ -1315,7 +1314,7 @@ class WebSocketClient(BaseCommunicationClient):
except (KeyError, AttributeError): except (KeyError, AttributeError):
logger.warning(f"[WebSocketClient] Failed to remove job {item.job_id} from HostNode status") logger.warning(f"[WebSocketClient] Failed to remove job {item.job_id} from HostNode status")
# logger.debug(f"[WebSocketClient] Intercepting final status for job_id: {item.job_id} - {status}") logger.info(f"[WebSocketClient] Intercepting final status for job_id: {item.job_id} - {status}")
# 通知队列处理器job完成包括timeout的job # 通知队列处理器job完成包括timeout的job
self.queue_processor.handle_job_completed(item.job_id, status) self.queue_processor.handle_job_completed(item.job_id, status)
@@ -1376,7 +1375,7 @@ class WebSocketClient(BaseCommunicationClient):
# 收集设备信息 # 收集设备信息
devices = [] devices = []
machine_name = BasicConfig.machine_name machine_name = BasicConfig.machine_name
try: try:
host_node = HostNode.get_instance(0) host_node = HostNode.get_instance(0)
if host_node: if host_node:
@@ -1384,7 +1383,7 @@ class WebSocketClient(BaseCommunicationClient):
for device_id, namespace in host_node.devices_names.items(): for device_id, namespace in host_node.devices_names.items():
device_key = f"{namespace}/{device_id}" if namespace.startswith("/") else f"/{namespace}/{device_id}" device_key = f"{namespace}/{device_id}" if namespace.startswith("/") else f"/{namespace}/{device_id}"
is_online = device_key in host_node._online_devices is_online = device_key in host_node._online_devices
# 获取设备的动作信息 # 获取设备的动作信息
actions = {} actions = {}
for action_id, client in host_node._action_clients.items(): for action_id, client in host_node._action_clients.items():
@@ -1395,7 +1394,7 @@ class WebSocketClient(BaseCommunicationClient):
"action_path": action_id, "action_path": action_id,
"action_type": str(type(client).__name__), "action_type": str(type(client).__name__),
} }
devices.append({ devices.append({
"device_id": device_id, "device_id": device_id,
"namespace": namespace, "namespace": namespace,
@@ -1404,7 +1403,7 @@ class WebSocketClient(BaseCommunicationClient):
"machine_name": host_node.device_machine_names.get(device_id, machine_name), "machine_name": host_node.device_machine_names.get(device_id, machine_name),
"actions": actions, "actions": actions,
}) })
logger.info(f"[WebSocketClient] Collected {len(devices)} devices for host_ready") logger.info(f"[WebSocketClient] Collected {len(devices)} devices for host_ready")
except Exception as e: except Exception as e:
logger.warning(f"[WebSocketClient] Error collecting device info: {e}") logger.warning(f"[WebSocketClient] Error collecting device info: {e}")

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@@ -22,7 +22,6 @@ class BasicConfig:
startup_json_path = None # 填写绝对路径 startup_json_path = None # 填写绝对路径
disable_browser = False # 禁止浏览器自动打开 disable_browser = False # 禁止浏览器自动打开
port = 8002 # 本地HTTP服务 port = 8002 # 本地HTTP服务
check_mode = False # CI 检查模式,用于验证 registry 导入和文件一致性
# 'TRACE', 'DEBUG', 'INFO', 'WARNING', 'ERROR', 'CRITICAL' # 'TRACE', 'DEBUG', 'INFO', 'WARNING', 'ERROR', 'CRITICAL'
log_level: Literal["TRACE", "DEBUG", "INFO", "WARNING", "ERROR", "CRITICAL"] = "DEBUG" log_level: Literal["TRACE", "DEBUG", "INFO", "WARNING", "ERROR", "CRITICAL"] = "DEBUG"

File diff suppressed because it is too large Load Diff

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@@ -43,7 +43,7 @@ class Base(ABC):
self._type = typ self._type = typ
self._data_type = data_type self._data_type = data_type
self._node: Optional[Node] = None self._node: Optional[Node] = None
def _get_node(self) -> Node: def _get_node(self) -> Node:
if self._node is None: if self._node is None:
try: try:
@@ -66,7 +66,7 @@ class Base(ABC):
# 直接以字符串形式处理 # 直接以字符串形式处理
if isinstance(nid, str): if isinstance(nid, str):
nid = nid.strip() nid = nid.strip()
# 处理包含类名的格式,如 'StringNodeId(ns=4;s=...)' 或 'NumericNodeId(ns=2;i=...)' # 处理包含类名的格式,如 'StringNodeId(ns=4;s=...)' 或 'NumericNodeId(ns=2;i=...)'
# 提取括号内的内容 # 提取括号内的内容
match_wrapped = re.match(r'(String|Numeric|Byte|Guid|TwoByteNode|FourByteNode)NodeId\((.*)\)', nid) match_wrapped = re.match(r'(String|Numeric|Byte|Guid|TwoByteNode|FourByteNode)NodeId\((.*)\)', nid)
@@ -116,16 +116,16 @@ class Base(ABC):
def read(self) -> Tuple[Any, bool]: def read(self) -> Tuple[Any, bool]:
"""读取节点值,返回(值, 是否出错)""" """读取节点值,返回(值, 是否出错)"""
pass pass
@abstractmethod @abstractmethod
def write(self, value: Any) -> bool: def write(self, value: Any) -> bool:
"""写入节点值,返回是否出错""" """写入节点值,返回是否出错"""
pass pass
@property @property
def type(self) -> NodeType: def type(self) -> NodeType:
return self._type return self._type
@property @property
def node_id(self) -> str: def node_id(self) -> str:
return self._node_id return self._node_id
@@ -210,15 +210,15 @@ class Method(Base):
super().__init__(client, name, node_id, NodeType.METHOD, data_type) super().__init__(client, name, node_id, NodeType.METHOD, data_type)
self._parent_node_id = parent_node_id self._parent_node_id = parent_node_id
self._parent_node = None self._parent_node = None
def _get_parent_node(self) -> Node: def _get_parent_node(self) -> Node:
if self._parent_node is None: if self._parent_node is None:
try: try:
# 处理父节点ID使用与_get_node相同的解析逻辑 # 处理父节点ID使用与_get_node相同的解析逻辑
import re import re
nid = self._parent_node_id nid = self._parent_node_id
# 如果已经是 NodeId 对象,直接使用 # 如果已经是 NodeId 对象,直接使用
try: try:
from opcua.ua import NodeId as UaNodeId from opcua.ua import NodeId as UaNodeId
@@ -227,16 +227,16 @@ class Method(Base):
return self._parent_node return self._parent_node
except Exception: except Exception:
pass pass
# 字符串处理 # 字符串处理
if isinstance(nid, str): if isinstance(nid, str):
nid = nid.strip() nid = nid.strip()
# 处理包含类名的格式 # 处理包含类名的格式
match_wrapped = re.match(r'(String|Numeric|Byte|Guid|TwoByteNode|FourByteNode)NodeId\((.*)\)', nid) match_wrapped = re.match(r'(String|Numeric|Byte|Guid|TwoByteNode|FourByteNode)NodeId\((.*)\)', nid)
if match_wrapped: if match_wrapped:
nid = match_wrapped.group(2).strip() nid = match_wrapped.group(2).strip()
# 常见短格式 # 常见短格式
if re.match(r'^ns=\d+;[is]=', nid): if re.match(r'^ns=\d+;[is]=', nid):
self._parent_node = self._client.get_node(nid) self._parent_node = self._client.get_node(nid)
@@ -271,7 +271,7 @@ class Method(Base):
def write(self, value: Any) -> bool: def write(self, value: Any) -> bool:
"""方法节点不支持写入操作""" """方法节点不支持写入操作"""
return True return True
def call(self, *args) -> Tuple[Any, bool]: def call(self, *args) -> Tuple[Any, bool]:
"""调用方法,返回(返回值, 是否出错)""" """调用方法,返回(返回值, 是否出错)"""
try: try:
@@ -285,7 +285,7 @@ class Method(Base):
class Object(Base): class Object(Base):
def __init__(self, client: Client, name: str, node_id: str): def __init__(self, client: Client, name: str, node_id: str):
super().__init__(client, name, node_id, NodeType.OBJECT, None) super().__init__(client, name, node_id, NodeType.OBJECT, None)
def read(self) -> Tuple[Any, bool]: def read(self) -> Tuple[Any, bool]:
"""对象节点不支持直接读取操作""" """对象节点不支持直接读取操作"""
return None, True return None, True
@@ -293,7 +293,7 @@ class Object(Base):
def write(self, value: Any) -> bool: def write(self, value: Any) -> bool:
"""对象节点不支持直接写入操作""" """对象节点不支持直接写入操作"""
return True return True
def get_children(self) -> Tuple[List[Node], bool]: def get_children(self) -> Tuple[List[Node], bool]:
"""获取子节点列表,返回(子节点列表, 是否出错)""" """获取子节点列表,返回(子节点列表, 是否出错)"""
try: try:
@@ -301,4 +301,4 @@ class Object(Base):
return children, False return children, False
except Exception as e: except Exception as e:
print(f"获取对象 {self._name} 的子节点失败: {e}") print(f"获取对象 {self._name} 的子节点失败: {e}")
return [], True return [], True

View File

@@ -1,687 +0,0 @@
"""
Virtual Workbench Device - 模拟工作台设备
包含:
- 1个机械臂 (每次操作3s, 独占锁)
- 3个加热台 (每次加热10s, 可并行)
工作流程:
1. A1-A5 物料同时启动,竞争机械臂
2. 机械臂将物料移动到空闲加热台
3. 加热完成后机械臂将物料移动到C1-C5
注意:调用来自线程池,使用 threading.Lock 进行同步
"""
import logging
import time
from typing import Dict, Any, Optional
from dataclasses import dataclass
from enum import Enum
from threading import Lock, RLock
from typing_extensions import TypedDict
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
from unilabos.utils.decorator import not_action
# ============ TypedDict 返回类型定义 ============
class MoveToHeatingStationResult(TypedDict):
"""move_to_heating_station 返回类型"""
success: bool
station_id: int
material_id: str
material_number: int
message: str
class StartHeatingResult(TypedDict):
"""start_heating 返回类型"""
success: bool
station_id: int
material_id: str
material_number: int
message: str
class MoveToOutputResult(TypedDict):
"""move_to_output 返回类型"""
success: bool
station_id: int
material_id: str
class PrepareMaterialsResult(TypedDict):
"""prepare_materials 返回类型 - 批量准备物料"""
success: bool
count: int
material_1: int # 物料编号1
material_2: int # 物料编号2
material_3: int # 物料编号3
material_4: int # 物料编号4
material_5: int # 物料编号5
message: str
# ============ 状态枚举 ============
class HeatingStationState(Enum):
"""加热台状态枚举"""
IDLE = "idle" # 空闲
OCCUPIED = "occupied" # 已放置物料,等待加热
HEATING = "heating" # 加热中
COMPLETED = "completed" # 加热完成,等待取走
class ArmState(Enum):
"""机械臂状态枚举"""
IDLE = "idle" # 空闲
BUSY = "busy" # 工作中
@dataclass
class HeatingStation:
"""加热台数据结构"""
station_id: int
state: HeatingStationState = HeatingStationState.IDLE
current_material: Optional[str] = None # 当前物料 (如 "A1", "A2")
material_number: Optional[int] = None # 物料编号 (1-5)
heating_start_time: Optional[float] = None
heating_progress: float = 0.0
class VirtualWorkbench:
"""
Virtual Workbench Device - 虚拟工作台设备
模拟一个包含1个机械臂和3个加热台的工作站
- 机械臂操作耗时3秒同一时间只能执行一个操作
- 加热台加热耗时10秒3个加热台可并行工作
工作流:
1. 物料A1-A5并发启动线程池竞争机械臂使用权
2. 获取机械臂后,查找空闲加热台
3. 机械臂将物料放入加热台,开始加热
4. 加热完成后机械臂将物料移动到目标位置Cn
"""
_ros_node: BaseROS2DeviceNode
# 配置常量
ARM_OPERATION_TIME: float = 3.0 # 机械臂操作时间(秒)
HEATING_TIME: float = 10.0 # 加热时间(秒)
NUM_HEATING_STATIONS: int = 3 # 加热台数量
def __init__(self, device_id: Optional[str] = None, config: Optional[Dict[str, Any]] = None, **kwargs):
# 处理可能的不同调用方式
if device_id is None and "id" in kwargs:
device_id = kwargs.pop("id")
if config is None and "config" in kwargs:
config = kwargs.pop("config")
self.device_id = device_id or "virtual_workbench"
self.config = config or {}
self.logger = logging.getLogger(f"VirtualWorkbench.{self.device_id}")
self.data: Dict[str, Any] = {}
# 从config中获取可配置参数
self.ARM_OPERATION_TIME = float(self.config.get("arm_operation_time", 3.0))
self.HEATING_TIME = float(self.config.get("heating_time", 10.0))
self.NUM_HEATING_STATIONS = int(self.config.get("num_heating_stations", 3))
# 机械臂状态和锁 (使用threading.Lock)
self._arm_lock = Lock()
self._arm_state = ArmState.IDLE
self._arm_current_task: Optional[str] = None
# 加热台状态 (station_id -> HeatingStation) - 立即初始化不依赖initialize()
self._heating_stations: Dict[int, HeatingStation] = {
i: HeatingStation(station_id=i)
for i in range(1, self.NUM_HEATING_STATIONS + 1)
}
self._stations_lock = RLock() # 可重入锁,保护加热台状态
# 任务追踪
self._active_tasks: Dict[str, Dict[str, Any]] = {} # material_id -> task_info
self._tasks_lock = Lock()
# 处理其他kwargs参数
skip_keys = {"arm_operation_time", "heating_time", "num_heating_stations"}
for key, value in kwargs.items():
if key not in skip_keys and not hasattr(self, key):
setattr(self, key, value)
self.logger.info(f"=== 虚拟工作台 {self.device_id} 已创建 ===")
self.logger.info(
f"机械臂操作时间: {self.ARM_OPERATION_TIME}s | "
f"加热时间: {self.HEATING_TIME}s | "
f"加热台数量: {self.NUM_HEATING_STATIONS}"
)
@not_action
def post_init(self, ros_node: BaseROS2DeviceNode):
"""ROS节点初始化后回调"""
self._ros_node = ros_node
@not_action
def initialize(self) -> bool:
"""初始化虚拟工作台"""
self.logger.info(f"初始化虚拟工作台 {self.device_id}")
# 重置加热台状态 (已在__init__中创建这里重置为初始状态)
with self._stations_lock:
for station in self._heating_stations.values():
station.state = HeatingStationState.IDLE
station.current_material = None
station.material_number = None
station.heating_progress = 0.0
# 初始化状态
self.data.update({
"status": "Ready",
"arm_state": ArmState.IDLE.value,
"arm_current_task": None,
"heating_stations": self._get_stations_status(),
"active_tasks_count": 0,
"message": "工作台就绪",
})
self.logger.info(f"工作台初始化完成: {self.NUM_HEATING_STATIONS}个加热台就绪")
return True
@not_action
def cleanup(self) -> bool:
"""清理虚拟工作台"""
self.logger.info(f"清理虚拟工作台 {self.device_id}")
self._arm_state = ArmState.IDLE
self._arm_current_task = None
with self._stations_lock:
self._heating_stations.clear()
with self._tasks_lock:
self._active_tasks.clear()
self.data.update({
"status": "Offline",
"arm_state": ArmState.IDLE.value,
"heating_stations": {},
"message": "工作台已关闭",
})
return True
def _get_stations_status(self) -> Dict[int, Dict[str, Any]]:
"""获取所有加热台状态"""
with self._stations_lock:
return {
station_id: {
"state": station.state.value,
"current_material": station.current_material,
"material_number": station.material_number,
"heating_progress": station.heating_progress,
}
for station_id, station in self._heating_stations.items()
}
def _update_data_status(self, message: Optional[str] = None):
"""更新状态数据"""
self.data.update({
"arm_state": self._arm_state.value,
"arm_current_task": self._arm_current_task,
"heating_stations": self._get_stations_status(),
"active_tasks_count": len(self._active_tasks),
})
if message:
self.data["message"] = message
def _find_available_heating_station(self) -> Optional[int]:
"""查找空闲的加热台
Returns:
空闲加热台ID如果没有则返回None
"""
with self._stations_lock:
for station_id, station in self._heating_stations.items():
if station.state == HeatingStationState.IDLE:
return station_id
return None
def _acquire_arm(self, task_description: str) -> bool:
"""获取机械臂使用权(阻塞直到获取)
Args:
task_description: 任务描述,用于日志
Returns:
是否成功获取
"""
self.logger.info(f"[{task_description}] 等待获取机械臂...")
# 阻塞等待获取锁
self._arm_lock.acquire()
self._arm_state = ArmState.BUSY
self._arm_current_task = task_description
self._update_data_status(f"机械臂执行: {task_description}")
self.logger.info(f"[{task_description}] 成功获取机械臂使用权")
return True
def _release_arm(self):
"""释放机械臂"""
task = self._arm_current_task
self._arm_state = ArmState.IDLE
self._arm_current_task = None
self._arm_lock.release()
self._update_data_status(f"机械臂已释放 (完成: {task})")
self.logger.info(f"机械臂已释放 (完成: {task})")
def prepare_materials(
self,
count: int = 5,
) -> PrepareMaterialsResult:
"""
批量准备物料 - 虚拟起始节点
作为工作流的起始节点,生成指定数量的物料编号供后续节点使用。
输出5个handle (material_1 ~ material_5)分别对应实验1~5。
Args:
count: 待生成的物料数量默认5 (生成 A1-A5)
Returns:
PrepareMaterialsResult: 包含 material_1 ~ material_5 用于传递给 move_to_heating_station
"""
# 生成物料列表 A1 - A{count}
materials = [i for i in range(1, count + 1)]
self.logger.info(
f"[准备物料] 生成 {count} 个物料: "
f"A1-A{count} -> material_1~material_{count}"
)
return {
"success": True,
"count": count,
"material_1": materials[0] if len(materials) > 0 else 0,
"material_2": materials[1] if len(materials) > 1 else 0,
"material_3": materials[2] if len(materials) > 2 else 0,
"material_4": materials[3] if len(materials) > 3 else 0,
"material_5": materials[4] if len(materials) > 4 else 0,
"message": f"已准备 {count} 个物料: A1-A{count}",
}
def move_to_heating_station(
self,
material_number: int,
) -> MoveToHeatingStationResult:
"""
将物料从An位置移动到加热台
多线程并发调用时,会竞争机械臂使用权,并自动查找空闲加热台
Args:
material_number: 物料编号 (1-5)
Returns:
MoveToHeatingStationResult: 包含 station_id, material_number 等用于传递给下一个节点
"""
# 根据物料编号生成物料ID
material_id = f"A{material_number}"
task_desc = f"移动{material_id}到加热台"
self.logger.info(f"[任务] {task_desc} - 开始执行")
# 记录任务
with self._tasks_lock:
self._active_tasks[material_id] = {
"status": "waiting_for_arm",
"start_time": time.time(),
}
try:
# 步骤1: 等待获取机械臂使用权(竞争)
with self._tasks_lock:
self._active_tasks[material_id]["status"] = "waiting_for_arm"
self._acquire_arm(task_desc)
# 步骤2: 查找空闲加热台
with self._tasks_lock:
self._active_tasks[material_id]["status"] = "finding_station"
station_id = None
# 循环等待直到找到空闲加热台
while station_id is None:
station_id = self._find_available_heating_station()
if station_id is None:
self.logger.info(f"[{material_id}] 没有空闲加热台,等待中...")
# 释放机械臂,等待后重试
self._release_arm()
time.sleep(0.5)
self._acquire_arm(task_desc)
# 步骤3: 占用加热台 - 立即标记为OCCUPIED防止其他任务选择同一加热台
with self._stations_lock:
self._heating_stations[station_id].state = HeatingStationState.OCCUPIED
self._heating_stations[station_id].current_material = material_id
self._heating_stations[station_id].material_number = material_number
# 步骤4: 模拟机械臂移动操作 (3秒)
with self._tasks_lock:
self._active_tasks[material_id]["status"] = "arm_moving"
self._active_tasks[material_id]["assigned_station"] = station_id
self.logger.info(f"[{material_id}] 机械臂正在移动到加热台{station_id}...")
time.sleep(self.ARM_OPERATION_TIME)
# 步骤5: 放入加热台完成
self._update_data_status(f"{material_id}已放入加热台{station_id}")
self.logger.info(f"[{material_id}] 已放入加热台{station_id} (用时{self.ARM_OPERATION_TIME}s)")
# 释放机械臂
self._release_arm()
with self._tasks_lock:
self._active_tasks[material_id]["status"] = "placed_on_station"
return {
"success": True,
"station_id": station_id,
"material_id": material_id,
"material_number": material_number,
"message": f"{material_id}已成功移动到加热台{station_id}",
}
except Exception as e:
self.logger.error(f"[{material_id}] 移动失败: {str(e)}")
if self._arm_lock.locked():
self._release_arm()
return {
"success": False,
"station_id": -1,
"material_id": material_id,
"material_number": material_number,
"message": f"移动失败: {str(e)}",
}
def start_heating(
self,
station_id: int,
material_number: int,
) -> StartHeatingResult:
"""
启动指定加热台的加热程序
Args:
station_id: 加热台ID (1-3),从 move_to_heating_station 的 handle 传入
material_number: 物料编号,从 move_to_heating_station 的 handle 传入
Returns:
StartHeatingResult: 包含 station_id, material_number 等用于传递给下一个节点
"""
self.logger.info(f"[加热台{station_id}] 开始加热")
if station_id not in self._heating_stations:
return {
"success": False,
"station_id": station_id,
"material_id": "",
"material_number": material_number,
"message": f"无效的加热台ID: {station_id}",
}
with self._stations_lock:
station = self._heating_stations[station_id]
if station.current_material is None:
return {
"success": False,
"station_id": station_id,
"material_id": "",
"material_number": material_number,
"message": f"加热台{station_id}上没有物料",
}
if station.state == HeatingStationState.HEATING:
return {
"success": False,
"station_id": station_id,
"material_id": station.current_material,
"material_number": material_number,
"message": f"加热台{station_id}已经在加热中",
}
material_id = station.current_material
# 开始加热
station.state = HeatingStationState.HEATING
station.heating_start_time = time.time()
station.heating_progress = 0.0
with self._tasks_lock:
if material_id in self._active_tasks:
self._active_tasks[material_id]["status"] = "heating"
self._update_data_status(f"加热台{station_id}开始加热{material_id}")
# 模拟加热过程 (10秒)
start_time = time.time()
while True:
elapsed = time.time() - start_time
progress = min(100.0, (elapsed / self.HEATING_TIME) * 100)
with self._stations_lock:
self._heating_stations[station_id].heating_progress = progress
self._update_data_status(f"加热台{station_id}加热中: {progress:.1f}%")
if elapsed >= self.HEATING_TIME:
break
time.sleep(1.0)
# 加热完成
with self._stations_lock:
self._heating_stations[station_id].state = HeatingStationState.COMPLETED
self._heating_stations[station_id].heating_progress = 100.0
with self._tasks_lock:
if material_id in self._active_tasks:
self._active_tasks[material_id]["status"] = "heating_completed"
self._update_data_status(f"加热台{station_id}加热完成")
self.logger.info(f"[加热台{station_id}] {material_id}加热完成 (用时{self.HEATING_TIME}s)")
return {
"success": True,
"station_id": station_id,
"material_id": material_id,
"material_number": material_number,
"message": f"加热台{station_id}加热完成",
}
def move_to_output(
self,
station_id: int,
material_number: int,
) -> MoveToOutputResult:
"""
将物料从加热台移动到输出位置Cn
Args:
station_id: 加热台ID (1-3),从 start_heating 的 handle 传入
material_number: 物料编号,从 start_heating 的 handle 传入,用于确定输出位置 Cn
Returns:
MoveToOutputResult: 包含执行结果
"""
output_number = material_number # 物料编号决定输出位置
if station_id not in self._heating_stations:
return {
"success": False,
"station_id": station_id,
"material_id": "",
"output_position": f"C{output_number}",
"message": f"无效的加热台ID: {station_id}",
}
with self._stations_lock:
station = self._heating_stations[station_id]
material_id = station.current_material
if material_id is None:
return {
"success": False,
"station_id": station_id,
"material_id": "",
"output_position": f"C{output_number}",
"message": f"加热台{station_id}上没有物料",
}
if station.state != HeatingStationState.COMPLETED:
return {
"success": False,
"station_id": station_id,
"material_id": material_id,
"output_position": f"C{output_number}",
"message": f"加热台{station_id}尚未完成加热 (当前状态: {station.state.value})",
}
output_position = f"C{output_number}"
task_desc = f"从加热台{station_id}移动{material_id}{output_position}"
self.logger.info(f"[任务] {task_desc}")
try:
with self._tasks_lock:
if material_id in self._active_tasks:
self._active_tasks[material_id]["status"] = "waiting_for_arm_output"
# 获取机械臂
self._acquire_arm(task_desc)
with self._tasks_lock:
if material_id in self._active_tasks:
self._active_tasks[material_id]["status"] = "arm_moving_to_output"
# 模拟机械臂操作 (3秒)
self.logger.info(f"[{material_id}] 机械臂正在从加热台{station_id}取出并移动到{output_position}...")
time.sleep(self.ARM_OPERATION_TIME)
# 清空加热台
with self._stations_lock:
self._heating_stations[station_id].state = HeatingStationState.IDLE
self._heating_stations[station_id].current_material = None
self._heating_stations[station_id].material_number = None
self._heating_stations[station_id].heating_progress = 0.0
self._heating_stations[station_id].heating_start_time = None
# 释放机械臂
self._release_arm()
# 任务完成
with self._tasks_lock:
if material_id in self._active_tasks:
self._active_tasks[material_id]["status"] = "completed"
self._active_tasks[material_id]["end_time"] = time.time()
self._update_data_status(f"{material_id}已移动到{output_position}")
self.logger.info(f"[{material_id}] 已成功移动到{output_position} (用时{self.ARM_OPERATION_TIME}s)")
return {
"success": True,
"station_id": station_id,
"material_id": material_id,
"output_position": output_position,
"message": f"{material_id}已成功移动到{output_position}",
}
except Exception as e:
self.logger.error(f"移动到输出位置失败: {str(e)}")
if self._arm_lock.locked():
self._release_arm()
return {
"success": False,
"station_id": station_id,
"material_id": "",
"output_position": output_position,
"message": f"移动失败: {str(e)}",
}
# ============ 状态属性 ============
@property
def status(self) -> str:
return self.data.get("status", "Unknown")
@property
def arm_state(self) -> str:
return self._arm_state.value
@property
def arm_current_task(self) -> str:
return self._arm_current_task or ""
@property
def heating_station_1_state(self) -> str:
with self._stations_lock:
station = self._heating_stations.get(1)
return station.state.value if station else "unknown"
@property
def heating_station_1_material(self) -> str:
with self._stations_lock:
station = self._heating_stations.get(1)
return station.current_material or "" if station else ""
@property
def heating_station_1_progress(self) -> float:
with self._stations_lock:
station = self._heating_stations.get(1)
return station.heating_progress if station else 0.0
@property
def heating_station_2_state(self) -> str:
with self._stations_lock:
station = self._heating_stations.get(2)
return station.state.value if station else "unknown"
@property
def heating_station_2_material(self) -> str:
with self._stations_lock:
station = self._heating_stations.get(2)
return station.current_material or "" if station else ""
@property
def heating_station_2_progress(self) -> float:
with self._stations_lock:
station = self._heating_stations.get(2)
return station.heating_progress if station else 0.0
@property
def heating_station_3_state(self) -> str:
with self._stations_lock:
station = self._heating_stations.get(3)
return station.state.value if station else "unknown"
@property
def heating_station_3_material(self) -> str:
with self._stations_lock:
station = self._heating_stations.get(3)
return station.current_material or "" if station else ""
@property
def heating_station_3_progress(self) -> float:
with self._stations_lock:
station = self._heating_stations.get(3)
return station.heating_progress if station else 0.0
@property
def active_tasks_count(self) -> int:
with self._tasks_lock:
return len(self._active_tasks)
@property
def message(self) -> str:
return self.data.get("message", "")

View File

@@ -1,5 +1,9 @@
# 工作站抽象基类物料系统架构说明 # 工作站抽象基类物料系统架构说明
## 设计理念
基于用户需求"请你帮我系统思考一下,工作站抽象基类的物料系统基类该如何构建",我们最终确定了一个**PyLabRobot Deck为中心**的简化架构。
### 核心原则 ### 核心原则
1. **PyLabRobot为物料管理核心**使用PyLabRobot的Deck系统作为物料管理的基础利用其成熟的Resource体系 1. **PyLabRobot为物料管理核心**使用PyLabRobot的Deck系统作为物料管理的基础利用其成熟的Resource体系

View File

@@ -0,0 +1,12 @@
import pubchempy as pcp
cas = "21324-40-3" # 示例
comps = pcp.get_compounds(cas, namespace="name")
if not comps:
raise ValueError("No hit")
c = comps[0]
print("Canonical SMILES:", c.canonical_smiles)
print("Isomeric SMILES:", c.isomeric_smiles)
print("MW:", c.molecular_weight)

View File

@@ -0,0 +1,7 @@
material_name
LiPF6
LiDFOB
DTD
LiFSI
LiPO2F2
1 material_name
2 LiPF6
3 LiDFOB
4 DTD
5 LiFSI
6 LiPO2F2

View File

@@ -1,157 +0,0 @@
# 批量出库 Excel 模板使用说明
**文件**: `outbound_template.xlsx`
**用途**: 配合 `auto_batch_outbound_from_xlsx()` 方法进行批量出库操作
**API 端点**: `/api/lims/storage/auto-batch-out-bound`
---
## 📋 Excel 列说明
| 列名 | 说明 | 示例 | 必填 |
|------|------|------|------|
| `locationId` | **库位 IDUUID** | `3a19da43-57b5-294f-d663-154a1cc32270` | ✅ 是 |
| `warehouseId` | **仓库 ID 或名称** | `配液站内试剂仓库` | ✅ 是 |
| `quantity` | **出库数量** | `1.0`, `2.0` | ✅ 是 |
| `x` | **X 坐标(库位横向位置)** | `1`, `2`, `3` | ✅ 是 |
| `y` | **Y 坐标(库位纵向位置)** | `1`, `2`, `3` | ✅ 是 |
| `z` | **Z 坐标(库位层数/高度)** | `1`, `2`, `3` | ✅ 是 |
| `备注说明` | 可选备注信息 | `配液站内试剂仓库-A01` | ❌ 否 |
### 📐 坐标说明
**x, y, z** 是库位在仓库内的**三维坐标**
```
仓库(例如 WH4
├── Z=1第1层/加样头面)
│ ├── X=1, Y=1位置 A
│ ├── X=2, Y=1位置 B
│ ├── X=3, Y=1位置 C
│ └── ...
└── Z=2第2层/原液瓶面)
├── X=1, Y=1位置 A
├── X=2, Y=1位置 B
└── ...
```
- **warehouseId**: 指定哪个仓库WH3, WH4, 配液站等)
- **x, y, z**: 在该仓库内的三维坐标
- **locationId**: 该坐标位置的唯一 UUID
### 🎯 起点与终点
**重要说明**:批量出库模板**只规定了出库的"起点"**(从哪里取物料),**没有指定"终点"**(放到哪里)。
```
出库流程:
起点Excel 指定) → 终点LIMS/工作流决定)
locationId, x, y, z → 由 LIMS 系统或当前工作流自动分配
```
**终点由以下方式确定:**
- **LIMS 系统自动分配**:根据当前任务自动规划目标位置
- **工作流预定义**:在创建出库任务时已绑定目标位置
- **暂存区**:默认放到出库暂存区,等待下一步操作
💡 **对比**:上料操作(`auto_feeding4to3`)则有 `targetWH` 参数可以指定目标仓库
---
## 🔍 如何获取 UUID
### 方法 1从配置文件获取
参考 `yibin_electrolyte_config.json` 中的 `warehouse_mapping`
```json
{
"warehouse_mapping": {
"配液站内试剂仓库": {
"site_uuids": {
"A01": "3a19da43-57b5-294f-d663-154a1cc32270",
"B01": "3a19da43-57b5-7394-5f49-54efe2c9bef2",
"C01": "3a19da43-57b5-5e75-552f-8dbd0ad1075f"
}
},
"手动堆栈": {
"site_uuids": {
"A01": "3a19deae-2c7a-36f5-5e41-02c5b66feaea",
"A02": "3a19deae-2c7a-dc6d-c41e-ef285d946cfe"
}
}
}
}
```
### 方法 2通过 API 查询
```python
material_info = hardware_interface.material_id_query(workflow_id)
locations = material_info.get("locations", [])
```
---
## 📝 填写示例
### 示例 1从配液站内试剂仓库出库
| locationId | warehouseId | quantity | x | y | z | 备注说明 |
|------------|-------------|----------|---|---|---|----------|
| `3a19da43-57b5-294f-d663-154a1cc32270` | 配液站内试剂仓库 | 1 | 1 | 1 | 1 | A01 位置 |
| `3a19da43-57b5-7394-5f49-54efe2c9bef2` | 配液站内试剂仓库 | 2 | 2 | 1 | 1 | B01 位置 |
### 示例 2从手动堆栈出库
| locationId | warehouseId | quantity | x | y | z | 备注说明 |
|------------|-------------|----------|---|---|---|----------|
| `3a19deae-2c7a-36f5-5e41-02c5b66feaea` | 手动堆栈 | 1 | 1 | 1 | 1 | A01 |
| `3a19deae-2c7a-dc6d-c41e-ef285d946cfe` | 手动堆栈 | 1 | 1 | 2 | 1 | A02 |
---
## 💻 使用方法
```python
from bioyond_cell_workstation import BioyondCellWorkstation
# 初始化工作站
workstation = BioyondCellWorkstation(config=config, deck=deck)
# 调用批量出库方法
result = workstation.auto_batch_outbound_from_xlsx(
xlsx_path="outbound_template.xlsx"
)
```
---
## ⚠️ 注意事项
1. **locationId 必须是有效的 UUID**,不能使用库位名称
2. **x, y, z 坐标必须与 locationId 对应**,表示该库位在仓库内的位置
3. **quantity 必须是数字**,可以是整数或浮点数
4. Excel 文件必须包含表头行
5. 空行会被自动跳过
6. 确保 UUID 与实际库位对应,否则 API 会报错
---
## 📚 相关文件
- **配置文件**: `yibin_electrolyte_config.json`
- **Python 代码**: `bioyond_cell_workstation.py` (L630-695)
- **生成脚本**: `create_outbound_template.py`
- **上料模板**: `material_template.xlsx`
---
## 🔄 重新生成模板
```bash
conda activate newunilab
python create_outbound_template.py
```

View File

@@ -49,14 +49,6 @@ class BioyondV1RPC(BaseRequest):
self.config = config self.config = config
self.api_key = config["api_key"] self.api_key = config["api_key"]
self.host = config["api_host"] self.host = config["api_host"]
# 初始化 location_mapping
# 直接从 warehouse_mapping 构建,确保数据源所谓的单一和结构化
self.location_mapping = {}
warehouse_mapping = self.config.get("warehouse_mapping", {})
for warehouse_name, warehouse_config in warehouse_mapping.items():
if "site_uuids" in warehouse_config:
self.location_mapping.update(warehouse_config["site_uuids"])
self._logger = SimpleLogger() self._logger = SimpleLogger()
self.material_cache = {} self.material_cache = {}
self._load_material_cache() self._load_material_cache()
@@ -184,40 +176,7 @@ class BioyondV1RPC(BaseRequest):
return {} return {}
print(f"add material data: {response['data']}") print(f"add material data: {response['data']}")
return response.get("data", {})
# 自动更新缓存
data = response.get("data", {})
if data:
if isinstance(data, str):
# 如果返回的是字符串通常是ID
mat_id = data
name = params.get("name")
else:
# 如果返回的是字典尝试获取name和id
name = data.get("name") or params.get("name")
mat_id = data.get("id")
if name and mat_id:
self.material_cache[name] = mat_id
print(f"已自动更新缓存: {name} -> {mat_id}")
# 处理返回数据中的 details (如果有)
# 有些 API 返回结构可能直接包含 details或者在 data 字段中
details = data.get("details", []) if isinstance(data, dict) else []
if not details and isinstance(data, dict):
details = data.get("detail", [])
if details:
for detail in details:
d_name = detail.get("name")
# 尝试从不同字段获取 ID
d_id = detail.get("id") or detail.get("detailMaterialId")
if d_name and d_id:
self.material_cache[d_name] = d_id
print(f"已自动更新 detail 缓存: {d_name} -> {d_id}")
return data
def query_matial_type_id(self, data) -> list: def query_matial_type_id(self, data) -> list:
"""查找物料typeid""" """查找物料typeid"""
@@ -244,7 +203,7 @@ class BioyondV1RPC(BaseRequest):
params={ params={
"apiKey": self.api_key, "apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(), "requestTime": self.get_current_time_iso8601(),
"data": 0, "data": {},
}) })
if not response or response['code'] != 1: if not response or response['code'] != 1:
return [] return []
@@ -314,19 +273,12 @@ class BioyondV1RPC(BaseRequest):
if not response or response['code'] != 1: if not response or response['code'] != 1:
return {} return {}
# 自动更新缓存 - 移除被删除的物料
for name, mid in list(self.material_cache.items()):
if mid == material_id:
del self.material_cache[name]
print(f"已从缓存移除物料: {name}")
break
return response.get("data", {}) return response.get("data", {})
def material_outbound(self, material_id: str, location_name: str, quantity: int) -> dict: def material_outbound(self, material_id: str, location_name: str, quantity: int) -> dict:
"""指定库位出库物料(通过库位名称)""" """指定库位出库物料(通过库位名称)"""
location_id = self.location_mapping.get(location_name, location_name) # location_name 参数实际上应该直接是 location_id (UUID)
location_id = location_name
params = { params = {
"materialId": material_id, "materialId": material_id,
@@ -1152,10 +1104,6 @@ class BioyondV1RPC(BaseRequest):
for detail_material in detail_materials: for detail_material in detail_materials:
detail_name = detail_material.get("name") detail_name = detail_material.get("name")
detail_id = detail_material.get("detailMaterialId") detail_id = detail_material.get("detailMaterialId")
if not detail_id:
# 尝试其他可能的字段
detail_id = detail_material.get("id")
if detail_name and detail_id: if detail_name and detail_id:
self.material_cache[detail_name] = detail_id self.material_cache[detail_name] = detail_id
print(f"加载detail材料: {detail_name} -> ID: {detail_id}") print(f"加载detail材料: {detail_name} -> ID: {detail_id}")
@@ -1176,14 +1124,6 @@ class BioyondV1RPC(BaseRequest):
print(f"从缓存找到材料: {material_name_or_id} -> ID: {material_id}") print(f"从缓存找到材料: {material_name_or_id} -> ID: {material_id}")
return material_id return material_id
# 如果缓存中没有,尝试刷新缓存
print(f"缓存中未找到材料 '{material_name_or_id}',尝试刷新缓存...")
self.refresh_material_cache()
if material_name_or_id in self.material_cache:
material_id = self.material_cache[material_name_or_id]
print(f"刷新缓存后找到材料: {material_name_or_id} -> ID: {material_id}")
return material_id
print(f"警告: 未在缓存中找到材料名称 '{material_name_or_id}',将使用原值") print(f"警告: 未在缓存中找到材料名称 '{material_name_or_id}',将使用原值")
return material_name_or_id return material_name_or_id

View File

@@ -1,329 +0,0 @@
# config.py
"""
Bioyond工作站配置文件
包含API配置、工作流映射、物料类型映射、仓库库位映射等所有配置信息
"""
from unilabos.resources.bioyond.decks import BIOYOND_PolymerReactionStation_Deck
# ============================================================================
# 基础配置
# ============================================================================
# API配置
API_CONFIG = {
"api_key": "DE9BDDA0",
"api_host": "http://192.168.1.200:44402"
}
# HTTP 报送服务配置
HTTP_SERVICE_CONFIG = {
"http_service_host": "127.0.0.1", # 监听地址
"http_service_port": 8080, # 监听端口
}
# Deck配置 - 反应站工作台配置
DECK_CONFIG = BIOYOND_PolymerReactionStation_Deck(setup=True)
# ============================================================================
# 工作流配置
# ============================================================================
# 工作流ID映射
WORKFLOW_MAPPINGS = {
"reactor_taken_out": "3a16081e-4788-ca37-eff4-ceed8d7019d1",
"reactor_taken_in": "3a160df6-76b3-0957-9eb0-cb496d5721c6",
"Solid_feeding_vials": "3a160877-87e7-7699-7bc6-ec72b05eb5e6",
"Liquid_feeding_vials(non-titration)": "3a167d99-6158-c6f0-15b5-eb030f7d8e47",
"Liquid_feeding_solvents": "3a160824-0665-01ed-285a-51ef817a9046",
"Liquid_feeding(titration)": "3a16082a-96ac-0449-446a-4ed39f3365b6",
"liquid_feeding_beaker": "3a16087e-124f-8ddb-8ec1-c2dff09ca784",
"Drip_back": "3a162cf9-6aac-565a-ddd7-682ba1796a4a",
}
# 工作流名称到显示名称的映射
WORKFLOW_TO_SECTION_MAP = {
'reactor_taken_in': '反应器放入',
'reactor_taken_out': '反应器取出',
'Solid_feeding_vials': '固体投料-小瓶',
'Liquid_feeding_vials(non-titration)': '液体投料-小瓶(非滴定)',
'Liquid_feeding_solvents': '液体投料-溶剂',
'Liquid_feeding(titration)': '液体投料-滴定',
'liquid_feeding_beaker': '液体投料-烧杯',
'Drip_back': '液体回滴'
}
# 工作流步骤ID配置
WORKFLOW_STEP_IDS = {
"reactor_taken_in": {
"config": "60a06f85-c5b3-29eb-180f-4f62dd7e2154"
},
"liquid_feeding_beaker": {
"liquid": "6808cda7-fee7-4092-97f0-5f9c2ffa60e3",
"observe": "1753c0de-dffc-4ee6-8458-805a2e227362"
},
"liquid_feeding_vials_non_titration": {
"liquid": "62ea6e95-3d5d-43db-bc1e-9a1802673861",
"observe": "3a167d99-6172-b67b-5f22-a7892197142e"
},
"liquid_feeding_solvents": {
"liquid": "1fcea355-2545-462b-b727-350b69a313bf",
"observe": "0553dfb3-9ac5-4ace-8e00-2f11029919a8"
},
"solid_feeding_vials": {
"feeding": "f7ae7448-4f20-4c1d-8096-df6fbadd787a",
"observe": "263c7ed5-7277-426b-bdff-d6fbf77bcc05"
},
"liquid_feeding_titration": {
"liquid": "a00ec41b-e666-4422-9c20-bfcd3cd15c54",
"observe": "ac738ff6-4c58-4155-87b1-d6f65a2c9ab5"
},
"drip_back": {
"liquid": "371be86a-ab77-4769-83e5-54580547c48a",
"observe": "ce024b9d-bd20-47b8-9f78-ca5ce7f44cf1"
}
}
# 工作流动作名称配置
ACTION_NAMES = {
"reactor_taken_in": {
"config": "通量-配置",
"stirring": "反应模块-开始搅拌"
},
"solid_feeding_vials": {
"feeding": "粉末加样模块-投料",
"observe": "反应模块-观察搅拌结果"
},
"liquid_feeding_vials_non_titration": {
"liquid": "稀释液瓶加液位-液体投料",
"observe": "反应模块-滴定结果观察"
},
"liquid_feeding_solvents": {
"liquid": "试剂AB放置位-试剂吸液分液",
"observe": "反应模块-观察搅拌结果"
},
"liquid_feeding_titration": {
"liquid": "稀释液瓶加液位-稀释液吸液分液",
"observe": "反应模块-滴定结果观察"
},
"liquid_feeding_beaker": {
"liquid": "烧杯溶液放置位-烧杯吸液分液",
"observe": "反应模块-观察搅拌结果"
},
"drip_back": {
"liquid": "试剂AB放置位-试剂吸液分液",
"observe": "反应模块-向下滴定结果观察"
}
}
# ============================================================================
# 仓库配置
# ============================================================================
# 说明:
# - 出库和入库操作都需要UUID
WAREHOUSE_MAPPING = {
# ========== 反应站仓库 ==========
# 堆栈1左 - 反应站左侧堆栈 (4行×4列=16个库位, A01D04)
"堆栈1左": {
"uuid": "3a14aa17-0d49-dce4-486e-4b5c85c8b366",
"site_uuids": {
"A01": "3a14aa17-0d49-11d7-a6e1-f236b3e5e5a3",
"A02": "3a14aa17-0d49-4bc5-8836-517b75473f5f",
"A03": "3a14aa17-0d49-c2bc-6222-5cee8d2d94f8",
"A04": "3a14aa17-0d49-3ce2-8e9a-008c38d116fb",
"B01": "3a14aa17-0d49-f49c-6b66-b27f185a3b32",
"B02": "3a14aa17-0d49-cf46-df85-a979c9c9920c",
"B03": "3a14aa17-0d49-7698-4a23-f7ffb7d48ba3",
"B04": "3a14aa17-0d49-1231-99be-d5870e6478e9",
"C01": "3a14aa17-0d49-be34-6fae-4aed9d48b70b",
"C02": "3a14aa17-0d49-11d7-0897-34921dcf6b7c",
"C03": "3a14aa17-0d49-9840-0bd5-9c63c1bb2c29",
"C04": "3a14aa17-0d49-8335-3bff-01da69ea4911",
"D01": "3a14aa17-0d49-2bea-c8e5-2b32094935d5",
"D02": "3a14aa17-0d49-cff4-e9e8-5f5f0bc1ef32",
"D03": "3a14aa17-0d49-4948-cb0a-78f30d1ca9b8",
"D04": "3a14aa17-0d49-fd2f-9dfb-a29b11e84099",
},
},
# 堆栈1右 - 反应站右侧堆栈 (4行×4列=16个库位, A05D08)
"堆栈1右": {
"uuid": "3a14aa17-0d49-dce4-486e-4b5c85c8b366",
"site_uuids": {
"A05": "3a14aa17-0d49-2c61-edc8-72a8ca7192dd",
"A06": "3a14aa17-0d49-60c8-2b00-40b17198f397",
"A07": "3a14aa17-0d49-ec5b-0b75-634dce8eed25",
"A08": "3a14aa17-0d49-3ec9-55b3-f3189c4ec53d",
"B05": "3a14aa17-0d49-6a4e-abcf-4c113eaaeaad",
"B06": "3a14aa17-0d49-e3f6-2dd6-28c2e8194fbe",
"B07": "3a14aa17-0d49-11a6-b861-ee895121bf52",
"B08": "3a14aa17-0d49-9c7d-1145-d554a6e482f0",
"C05": "3a14aa17-0d49-45c4-7a34-5105bc3e2368",
"C06": "3a14aa17-0d49-867e-39ab-31b3fe9014be",
"C07": "3a14aa17-0d49-ec56-c4b4-39fd9b2131e7",
"C08": "3a14aa17-0d49-1128-d7d9-ffb1231c98c0",
"D05": "3a14aa17-0d49-e843-f961-ea173326a14b",
"D06": "3a14aa17-0d49-4d26-a985-f188359c4f8b",
"D07": "3a14aa17-0d49-223a-b520-bc092bb42fe0",
"D08": "3a14aa17-0d49-4fa3-401a-6a444e1cca22",
},
},
# 站内试剂存放堆栈
"站内试剂存放堆栈": {
"uuid": "3a14aa3b-9fab-9d8e-d1a7-828f01f51f0c",
"site_uuids": {
"A01": "3a14aa3b-9fab-adac-7b9c-e1ee446b51d5",
"A02": "3a14aa3b-9fab-ca72-febc-b7c304476c78"
}
},
# 测量小瓶仓库(测密度)
"测量小瓶仓库": {
"uuid": "3a15012f-705b-c0de-3f9e-950c205f9921",
"site_uuids": {
"A01": "3a15012f-705e-0524-3161-c523b5aebc97",
"A02": "3a15012f-705e-7cd1-32ab-ad4fd1ab75c8",
"A03": "3a15012f-705e-a5d6-edac-bdbfec236260",
"B01": "3a15012f-705e-e0ee-80e0-10a6b3fc500d",
"B02": "3a15012f-705e-e499-180d-de06d60d0b21",
"B03": "3a15012f-705e-eff6-63f1-09f742096b26"
}
},
# 站内Tip盒堆栈 - 用于存放枪头盒 (耗材)
"站内Tip盒堆栈": {
"uuid": "3a14aa3a-2d3c-b5c1-9ddf-7c4a957d459a",
"site_uuids": {
"A01": "3a14aa3a-2d3d-e700-411a-0ddf85e1f18a",
"A02": "3a14aa3a-2d3d-a7ce-099a-d5632fdafa24",
"A03": "3a14aa3a-2d3d-bdf6-a702-c60b38b08501",
"B01": "3a14aa3a-2d3d-d704-f076-2a8d5bc72cb8",
"B02": "3a14aa3a-2d3d-c350-2526-0778d173a5ac",
"B03": "3a14aa3a-2d3d-bc38-b356-f0de2e44e0c7"
}
},
# ========== 配液站仓库 ==========
"粉末堆栈": {
"uuid": "3a14198e-6928-121f-7ca6-88ad3ae7e6a0",
"site_uuids": {
"A01": "3a14198e-6929-31f0-8a22-0f98f72260df",
"A02": "3a14198e-6929-4379-affa-9a2935c17f99",
"A03": "3a14198e-6929-56da-9a1c-7f5fbd4ae8af",
"A04": "3a14198e-6929-5e99-2b79-80720f7cfb54",
"B01": "3a14198e-6929-f525-9a1b-1857552b28ee",
"B02": "3a14198e-6929-bf98-0fd5-26e1d68bf62d",
"B03": "3a14198e-6929-2d86-a468-602175a2b5aa",
"B04": "3a14198e-6929-1a98-ae57-e97660c489ad",
"C01": "3a14198e-6929-46fe-841e-03dd753f1e4a",
"C02": "3a14198e-6929-72ac-32ce-9b50245682b8",
"C03": "3a14198e-6929-8a0b-b686-6f4a2955c4e2",
"C04": "3a14198e-6929-a0ec-5f15-c0f9f339f963",
"D01": "3a14198e-6929-1bc9-a9bd-3b7ca66e7f95",
"D02": "3a14198e-6929-3bd8-e6c7-4a9fd93be118",
"D03": "3a14198e-6929-dde1-fc78-34a84b71afdf",
"D04": "3a14198e-6929-7ac8-915a-fea51cb2e884"
}
},
"溶液堆栈": {
"uuid": "3a14198e-d723-2c13-7d12-50143e190a23",
"site_uuids": {
"A01": "3a14198e-d724-e036-afdc-2ae39a7f3383",
"A02": "3a14198e-d724-d818-6d4f-5725191a24b5",
"A03": "3a14198e-d724-b5bb-adf3-4c5a0da6fb31",
"A04": "3a14198e-d724-d378-d266-2508a224a19f",
"B01": "3a14198e-d724-afa4-fc82-0ac8a9016791",
"B02": "3a14198e-d724-be8a-5e0b-012675e195c6",
"B03": "3a14198e-d724-ab4e-48cb-817c3c146707",
"B04": "3a14198e-d724-f56e-468b-0110a8feb36a",
"C01": "3a14198e-d724-ca48-bb9e-7e85751e55b6",
"C02": "3a14198e-d724-cc1e-5c2c-228a130f40a8",
"C03": "3a14198e-d724-7f18-1853-39d0c62e1d33",
"C04": "3a14198e-d724-0cf1-dea9-a1f40fe7e13c",
"D01": "3a14198e-d724-df6d-5e32-5483b3cab583",
"D02": "3a14198e-d724-1e28-c885-574c3df468d0",
"D03": "3a14198e-d724-28a2-a760-baa896f46b66",
"D04": "3a14198e-d724-0ddd-9654-f9352a421de9"
}
},
"试剂堆栈": {
"uuid": "3a14198c-c2cc-0290-e086-44a428fba248",
"site_uuids": {
"A01": "3a14198c-c2cf-8b40-af28-b467808f1c36", # x=1, y=1, code=0001-0001
"A02": "3a14198c-c2d0-dc7d-b8d0-e1d88cee3094", # x=1, y=2, code=0001-0002
"A03": "3a14198c-c2d0-354f-39ad-642e1a72fcb8", # x=1, y=3, code=0001-0003
"A04": "3a14198c-c2d0-725e-523d-34c037ac2440", # x=1, y=4, code=0001-0004
"B01": "3a14198c-c2d0-f3e7-871a-e470d144296f", # x=2, y=1, code=0001-0005
"B02": "3a14198c-c2d0-2070-efc8-44e245f10c6f", # x=2, y=2, code=0001-0006
"B03": "3a14198c-c2d0-1559-105d-0ea30682cab4", # x=2, y=3, code=0001-0007
"B04": "3a14198c-c2d0-efce-0939-69ca5a7dfd39" # x=2, y=4, code=0001-0008
}
}
}
# ============================================================================
# 物料类型配置
# ============================================================================
# 说明:
# - 格式: PyLabRobot资源类型名称 → Bioyond系统typeId的UUID
# - 这个映射基于 resource.model 属性 (不是显示名称!)
# - UUID为空表示该类型暂未在Bioyond系统中定义
MATERIAL_TYPE_MAPPINGS = {
# ================================================配液站资源============================================================
# ==================================================样品===============================================================
"BIOYOND_PolymerStation_1FlaskCarrier": ("烧杯", "3a14196b-24f2-ca49-9081-0cab8021bf1a"), # 配液站-样品-烧杯
"BIOYOND_PolymerStation_1BottleCarrier": ("试剂瓶", "3a14196b-8bcf-a460-4f74-23f21ca79e72"), # 配液站-样品-试剂瓶
"BIOYOND_PolymerStation_6StockCarrier": ("分装板", "3a14196e-5dfe-6e21-0c79-fe2036d052c4"), # 配液站-样品-分装板
"BIOYOND_PolymerStation_Liquid_Vial": ("10%分装小瓶", "3a14196c-76be-2279-4e22-7310d69aed68"), # 配液站-样品-分装板-第一排小瓶
"BIOYOND_PolymerStation_Solid_Vial": ("90%分装小瓶", "3a14196c-cdcf-088d-dc7d-5cf38f0ad9ea"), # 配液站-样品-分装板-第二排小瓶
# ==================================================试剂===============================================================
"BIOYOND_PolymerStation_8StockCarrier": ("样品板", "3a14196e-b7a0-a5da-1931-35f3000281e9"), # 配液站-试剂-样品板8孔
"BIOYOND_PolymerStation_Solid_Stock": ("样品瓶", "3a14196a-cf7d-8aea-48d8-b9662c7dba94"), # 配液站-试剂-样品板-样品瓶
}
# ============================================================================
# 动态生成的库位UUID映射从WAREHOUSE_MAPPING中提取
# ============================================================================
LOCATION_MAPPING = {}
for warehouse_name, warehouse_config in WAREHOUSE_MAPPING.items():
if "site_uuids" in warehouse_config:
LOCATION_MAPPING.update(warehouse_config["site_uuids"])
# ============================================================================
# 物料默认参数配置
# ============================================================================
# 说明:
# - 为特定物料名称自动添加默认参数(如密度、分子量、单位等)
# - 格式: 物料名称 → {参数字典}
# - 在创建或更新物料时,会自动合并这些参数到 Parameters 字段
# - unit: 物料的计量单位(会用于 unit 字段)
# - density/densityUnit: 密度信息(会添加到 Parameters 中)
MATERIAL_DEFAULT_PARAMETERS = {
# 溶剂类
"NMP": {
"unit": "毫升",
"density": "1.03",
"densityUnit": "g/mL",
"description": "N-甲基吡咯烷酮 (N-Methyl-2-pyrrolidone)"
},
# 可以继续添加其他物料...
}
# ============================================================================
# 物料类型默认参数配置
# ============================================================================
# 说明:
# - 为特定物料类型UUID自动添加默认参数
# - 格式: Bioyond类型UUID → {参数字典}
# - 优先级低于按名称匹配的配置
MATERIAL_TYPE_PARAMETERS = {
# 示例:
# "3a14196b-24f2-ca49-9081-0cab8021bf1a": { # 烧杯
# "unit": "个"
# }
}

View File

@@ -4,8 +4,7 @@ import time
from typing import Optional, Dict, Any, List from typing import Optional, Dict, Any, List
from typing_extensions import TypedDict from typing_extensions import TypedDict
import requests import requests
import pint from unilabos.devices.workstation.bioyond_studio.config import API_CONFIG
from unilabos.devices.workstation.bioyond_studio.bioyond_rpc import BioyondException from unilabos.devices.workstation.bioyond_studio.bioyond_rpc import BioyondException
from unilabos.devices.workstation.bioyond_studio.station import BioyondWorkstation from unilabos.devices.workstation.bioyond_studio.station import BioyondWorkstation
@@ -26,89 +25,13 @@ class ComputeExperimentDesignReturn(TypedDict):
class BioyondDispensingStation(BioyondWorkstation): class BioyondDispensingStation(BioyondWorkstation):
def __init__( def __init__(
self, self,
config: dict = None, config,
deck=None, # 桌子
protocol_type=None, deck,
*args,
**kwargs, **kwargs,
): ):
"""初始化配液站 super().__init__(config, deck, *args, **kwargs)
Args:
config: 配置字典,应包含material_type_mappings等配置
deck: Deck对象
protocol_type: 协议类型(由ROS系统传递,此处忽略)
**kwargs: 其他可能的参数
"""
if config is None:
config = {}
# 将 kwargs 合并到 config 中 (处理扁平化配置如 api_key)
config.update(kwargs)
if deck is None and config:
deck = config.get('deck')
# 🔧 修复: 确保 Deck 上的 warehouses 具有正确的 UUID (必须在 super().__init__ 之前执行,因为父类会触发同步)
# 从配置中读取 warehouse_mapping并应用到实际的 deck 资源上
if config and "warehouse_mapping" in config and deck:
warehouse_mapping = config["warehouse_mapping"]
print(f"正在根据配置更新 Deck warehouse UUIDs... (共有 {len(warehouse_mapping)} 个配置)")
user_deck = deck
# 初始化 warehouses 字典
if not hasattr(user_deck, "warehouses") or user_deck.warehouses is None:
user_deck.warehouses = {}
# 1. 尝试从 children 中查找匹配的资源
for child in user_deck.children:
# 简单判断: 如果名字在 mapping 中,就认为是 warehouse
if child.name in warehouse_mapping:
user_deck.warehouses[child.name] = child
print(f" - 从子资源中找到 warehouse: {child.name}")
# 2. 如果还是没找到,且 Deck 类有 setup 方法,尝试调用 setup (针对 Deck 对象正确但未初始化的情况)
if not user_deck.warehouses and hasattr(user_deck, "setup"):
print(" - 尝试调用 deck.setup() 初始化仓库...")
try:
user_deck.setup()
# setup 后重新检查
if hasattr(user_deck, "warehouses") and user_deck.warehouses:
print(f" - setup() 成功,找到 {len(user_deck.warehouses)} 个仓库")
except Exception as e:
print(f" - 调用 setup() 失败: {e}")
# 3. 如果仍然为空,可能需要手动创建 (仅针对特定已知的 Deck 类型进行补救,这里暂时只打印警告)
if not user_deck.warehouses:
print(" - ⚠️ 仍然无法找到任何 warehouse 资源!")
for wh_name, wh_config in warehouse_mapping.items():
target_uuid = wh_config.get("uuid")
# 尝试在 deck.warehouses 中查找
wh_resource = None
if hasattr(user_deck, "warehouses") and wh_name in user_deck.warehouses:
wh_resource = user_deck.warehouses[wh_name]
# 如果没找到,尝试在所有子资源中查找
if not wh_resource:
wh_resource = user_deck.get_resource(wh_name)
if wh_resource:
if target_uuid:
current_uuid = getattr(wh_resource, "uuid", None)
print(f"✅ 更新仓库 '{wh_name}' UUID: {current_uuid} -> {target_uuid}")
# 动态添加 uuid 属性
wh_resource.uuid = target_uuid
# 同时也确保 category 正确,避免 graphio 识别错误
# wh_resource.category = "warehouse"
else:
print(f"⚠️ 仓库 '{wh_name}' 在配置中没有 UUID")
else:
print(f"❌ 在 Deck 中未找到配置的仓库: '{wh_name}'")
super().__init__(bioyond_config=config, deck=deck)
# self.config = config # self.config = config
# self.api_key = config["api_key"] # self.api_key = config["api_key"]
# self.host = config["api_host"] # self.host = config["api_host"]
@@ -120,41 +43,6 @@ class BioyondDispensingStation(BioyondWorkstation):
# 用于跟踪任务完成状态的字典: {orderCode: {status, order_id, timestamp}} # 用于跟踪任务完成状态的字典: {orderCode: {status, order_id, timestamp}}
self.order_completion_status = {} self.order_completion_status = {}
# 初始化 pint 单位注册表
self.ureg = pint.UnitRegistry()
# 化合物信息
self.compound_info = {
"MolWt": {
"MDA": 108.14 * self.ureg.g / self.ureg.mol,
"TDA": 122.16 * self.ureg.g / self.ureg.mol,
"PAPP": 521.62 * self.ureg.g / self.ureg.mol,
"BTDA": 322.23 * self.ureg.g / self.ureg.mol,
"BPDA": 294.22 * self.ureg.g / self.ureg.mol,
"6FAP": 366.26 * self.ureg.g / self.ureg.mol,
"PMDA": 218.12 * self.ureg.g / self.ureg.mol,
"MPDA": 108.14 * self.ureg.g / self.ureg.mol,
"SIDA": 248.51 * self.ureg.g / self.ureg.mol,
"ODA": 200.236 * self.ureg.g / self.ureg.mol,
"4,4'-ODA": 200.236 * self.ureg.g / self.ureg.mol,
"134": 292.34 * self.ureg.g / self.ureg.mol,
},
"FuncGroup": {
"MDA": "Amine",
"TDA": "Amine",
"PAPP": "Amine",
"BTDA": "Anhydride",
"BPDA": "Anhydride",
"6FAP": "Amine",
"MPDA": "Amine",
"SIDA": "Amine",
"PMDA": "Anhydride",
"ODA": "Amine",
"4,4'-ODA": "Amine",
"134": "Amine",
}
}
def _post_project_api(self, endpoint: str, data: Any) -> Dict[str, Any]: def _post_project_api(self, endpoint: str, data: Any) -> Dict[str, Any]:
"""项目接口通用POST调用 """项目接口通用POST调用
@@ -166,7 +54,7 @@ class BioyondDispensingStation(BioyondWorkstation):
dict: 服务端响应失败时返回 {code:0,message,...} dict: 服务端响应失败时返回 {code:0,message,...}
""" """
request_data = { request_data = {
"apiKey": self.bioyond_config["api_key"], "apiKey": API_CONFIG["api_key"],
"requestTime": self.hardware_interface.get_current_time_iso8601(), "requestTime": self.hardware_interface.get_current_time_iso8601(),
"data": data "data": data
} }
@@ -197,7 +85,7 @@ class BioyondDispensingStation(BioyondWorkstation):
dict: 服务端响应失败时返回 {code:0,message,...} dict: 服务端响应失败时返回 {code:0,message,...}
""" """
request_data = { request_data = {
"apiKey": self.bioyond_config["api_key"], "apiKey": API_CONFIG["api_key"],
"requestTime": self.hardware_interface.get_current_time_iso8601(), "requestTime": self.hardware_interface.get_current_time_iso8601(),
"data": data "data": data
} }
@@ -230,22 +118,20 @@ class BioyondDispensingStation(BioyondWorkstation):
ratio = json.loads(ratio) ratio = json.loads(ratio)
except Exception: except Exception:
ratio = {} ratio = {}
root = str(Path(__file__).resolve().parents[3])
if root not in sys.path:
sys.path.append(root)
try:
mod = importlib.import_module("tem.compute")
except Exception as e:
raise BioyondException(f"无法导入计算模块: {e}")
try: try:
wp = float(wt_percent) if isinstance(wt_percent, str) else wt_percent wp = float(wt_percent) if isinstance(wt_percent, str) else wt_percent
mt = float(m_tot) if isinstance(m_tot, str) else m_tot mt = float(m_tot) if isinstance(m_tot, str) else m_tot
tp = float(titration_percent) if isinstance(titration_percent, str) else titration_percent tp = float(titration_percent) if isinstance(titration_percent, str) else titration_percent
except Exception as e: except Exception as e:
raise BioyondException(f"参数解析失败: {e}") raise BioyondException(f"参数解析失败: {e}")
res = mod.generate_experiment_design(ratio=ratio, wt_percent=wp, m_tot=mt, titration_percent=tp)
# 2. 调用内部计算方法
res = self._generate_experiment_design(
ratio=ratio,
wt_percent=wp,
m_tot=mt,
titration_percent=tp
)
# 3. 构造返回结果
out = { out = {
"solutions": res.get("solutions", []), "solutions": res.get("solutions", []),
"titration": res.get("titration", {}), "titration": res.get("titration", {}),
@@ -254,248 +140,11 @@ class BioyondDispensingStation(BioyondWorkstation):
"return_info": json.dumps(res, ensure_ascii=False) "return_info": json.dumps(res, ensure_ascii=False)
} }
return out return out
except BioyondException: except BioyondException:
raise raise
except Exception as e: except Exception as e:
raise BioyondException(str(e)) raise BioyondException(str(e))
def _generate_experiment_design(
self,
ratio: dict,
wt_percent: float = 0.25,
m_tot: float = 70,
titration_percent: float = 0.03,
) -> dict:
"""内部方法:生成实验设计
根据FuncGroup自动区分二胺和二酐每种二胺单独配溶液严格按照ratio顺序投料
参数:
ratio: 化合物配比字典格式: {"compound_name": ratio_value}
wt_percent: 固体重量百分比
m_tot: 反应混合物总质量(g)
titration_percent: 滴定溶液百分比
返回:
包含实验设计详细参数的字典
"""
# 溶剂密度
ρ_solvent = 1.03 * self.ureg.g / self.ureg.ml
# 二酐溶解度
solubility = 0.02 * self.ureg.g / self.ureg.ml
# 投入固体时最小溶剂体积
V_min = 30 * self.ureg.ml
m_tot = m_tot * self.ureg.g
# 保持ratio中的顺序
compound_names = list(ratio.keys())
compound_ratios = list(ratio.values())
# 验证所有化合物是否在 compound_info 中定义
undefined_compounds = [name for name in compound_names if name not in self.compound_info["MolWt"]]
if undefined_compounds:
available = list(self.compound_info["MolWt"].keys())
raise ValueError(
f"以下化合物未在 compound_info 中定义: {undefined_compounds}"
f"可用的化合物: {available}"
)
# 获取各化合物的分子量和官能团类型
molecular_weights = [self.compound_info["MolWt"][name] for name in compound_names]
func_groups = [self.compound_info["FuncGroup"][name] for name in compound_names]
# 记录化合物信息用于调试
self.hardware_interface._logger.info(f"化合物名称: {compound_names}")
self.hardware_interface._logger.info(f"官能团类型: {func_groups}")
# 按原始顺序分离二胺和二酐
ordered_compounds = list(zip(compound_names, compound_ratios, molecular_weights, func_groups))
diamine_compounds = [(name, ratio_val, mw, i) for i, (name, ratio_val, mw, fg) in enumerate(ordered_compounds) if fg == "Amine"]
anhydride_compounds = [(name, ratio_val, mw, i) for i, (name, ratio_val, mw, fg) in enumerate(ordered_compounds) if fg == "Anhydride"]
if not diamine_compounds or not anhydride_compounds:
raise ValueError(
f"需要同时包含二胺(Amine)和二酐(Anhydride)化合物。"
f"当前二胺: {[c[0] for c in diamine_compounds]}, "
f"当前二酐: {[c[0] for c in anhydride_compounds]}"
)
# 计算加权平均分子量 (基于摩尔比)
total_molar_ratio = sum(compound_ratios)
weighted_molecular_weight = sum(ratio_val * mw for ratio_val, mw in zip(compound_ratios, molecular_weights))
# 取最后一个二酐用于滴定
titration_anhydride = anhydride_compounds[-1]
solid_anhydrides = anhydride_compounds[:-1] if len(anhydride_compounds) > 1 else []
# 二胺溶液配制参数 - 每种二胺单独配制
diamine_solutions = []
total_diamine_volume = 0 * self.ureg.ml
# 计算反应物的总摩尔量
n_reactant = m_tot * wt_percent / weighted_molecular_weight
for name, ratio_val, mw, order_index in diamine_compounds:
# 跳过 SIDA
if name == "SIDA":
continue
# 计算该二胺需要的摩尔数
n_diamine_needed = n_reactant * ratio_val
# 二胺溶液配制参数 (每种二胺固定配制参数)
m_diamine_solid = 5.0 * self.ureg.g # 每种二胺固体质量
V_solvent_for_this = 20 * self.ureg.ml # 每种二胺溶剂体积
m_solvent_for_this = ρ_solvent * V_solvent_for_this
# 计算该二胺溶液的浓度
c_diamine = (m_diamine_solid / mw) / V_solvent_for_this
# 计算需要移取的溶液体积
V_diamine_needed = n_diamine_needed / c_diamine
diamine_solutions.append({
"name": name,
"order": order_index,
"solid_mass": m_diamine_solid.magnitude,
"solvent_volume": V_solvent_for_this.magnitude,
"concentration": c_diamine.magnitude,
"volume_needed": V_diamine_needed.magnitude,
"molar_ratio": ratio_val
})
total_diamine_volume += V_diamine_needed
# 按原始顺序排序
diamine_solutions.sort(key=lambda x: x["order"])
# 计算滴定二酐的质量
titration_name, titration_ratio, titration_mw, _ = titration_anhydride
m_titration_anhydride = n_reactant * titration_ratio * titration_mw
m_titration_90 = m_titration_anhydride * (1 - titration_percent)
m_titration_10 = m_titration_anhydride * titration_percent
# 计算其他固体二酐的质量 (按顺序)
solid_anhydride_masses = []
for name, ratio_val, mw, order_index in solid_anhydrides:
mass = n_reactant * ratio_val * mw
solid_anhydride_masses.append({
"name": name,
"order": order_index,
"mass": mass.magnitude,
"molar_ratio": ratio_val
})
# 按原始顺序排序
solid_anhydride_masses.sort(key=lambda x: x["order"])
# 计算溶剂用量
total_diamine_solution_mass = sum(
sol["volume_needed"] * ρ_solvent for sol in diamine_solutions
) * self.ureg.ml
# 预估滴定溶剂量、计算补加溶剂量
m_solvent_titration = m_titration_10 / solubility * ρ_solvent
m_solvent_add = m_tot * (1 - wt_percent) - total_diamine_solution_mass - m_solvent_titration
# 检查最小溶剂体积要求
total_liquid_volume = (total_diamine_solution_mass + m_solvent_add) / ρ_solvent
m_tot_min = V_min / total_liquid_volume * m_tot
# 如果需要,按比例放大
scale_factor = 1.0
if m_tot_min > m_tot:
scale_factor = (m_tot_min / m_tot).magnitude
m_titration_90 *= scale_factor
m_titration_10 *= scale_factor
m_solvent_add *= scale_factor
m_solvent_titration *= scale_factor
# 更新二胺溶液用量
for sol in diamine_solutions:
sol["volume_needed"] *= scale_factor
# 更新固体二酐用量
for anhydride in solid_anhydride_masses:
anhydride["mass"] *= scale_factor
m_tot = m_tot_min
# 生成投料顺序
feeding_order = []
# 1. 固体二酐 (按顺序)
for anhydride in solid_anhydride_masses:
feeding_order.append({
"step": len(feeding_order) + 1,
"type": "solid_anhydride",
"name": anhydride["name"],
"amount": anhydride["mass"],
"order": anhydride["order"]
})
# 2. 二胺溶液 (按顺序)
for sol in diamine_solutions:
feeding_order.append({
"step": len(feeding_order) + 1,
"type": "diamine_solution",
"name": sol["name"],
"amount": sol["volume_needed"],
"order": sol["order"]
})
# 3. 主要二酐粉末
feeding_order.append({
"step": len(feeding_order) + 1,
"type": "main_anhydride",
"name": titration_name,
"amount": m_titration_90.magnitude,
"order": titration_anhydride[3]
})
# 4. 补加溶剂
if m_solvent_add > 0:
feeding_order.append({
"step": len(feeding_order) + 1,
"type": "additional_solvent",
"name": "溶剂",
"amount": m_solvent_add.magnitude,
"order": 999
})
# 5. 滴定二酐溶液
feeding_order.append({
"step": len(feeding_order) + 1,
"type": "titration_anhydride",
"name": f"{titration_name} 滴定液",
"amount": m_titration_10.magnitude,
"titration_solvent": m_solvent_titration.magnitude,
"order": titration_anhydride[3]
})
# 返回实验设计结果
results = {
"total_mass": m_tot.magnitude,
"scale_factor": scale_factor,
"solutions": diamine_solutions,
"solids": solid_anhydride_masses,
"titration": {
"name": titration_name,
"main_portion": m_titration_90.magnitude,
"titration_portion": m_titration_10.magnitude,
"titration_solvent": m_solvent_titration.magnitude,
},
"solvents": {
"additional_solvent": m_solvent_add.magnitude,
"total_liquid_volume": total_liquid_volume.magnitude
},
"feeding_order": feeding_order,
"minimum_required_mass": m_tot_min.magnitude
}
return results
# 90%10%小瓶投料任务创建方法 # 90%10%小瓶投料任务创建方法
def create_90_10_vial_feeding_task(self, def create_90_10_vial_feeding_task(self,
order_name: str = None, order_name: str = None,
@@ -1312,108 +961,6 @@ class BioyondDispensingStation(BioyondWorkstation):
'actualVolume': actual_volume 'actualVolume': actual_volume
} }
def _simplify_report(self, report) -> Dict[str, Any]:
"""简化实验报告,只保留关键信息,去除冗余的工作流参数"""
if not isinstance(report, dict):
return report
data = report.get('data', {})
if not isinstance(data, dict):
return report
# 提取关键信息
simplified = {
'name': data.get('name'),
'code': data.get('code'),
'requester': data.get('requester'),
'workflowName': data.get('workflowName'),
'workflowStep': data.get('workflowStep'),
'requestTime': data.get('requestTime'),
'startPreparationTime': data.get('startPreparationTime'),
'completeTime': data.get('completeTime'),
'useTime': data.get('useTime'),
'status': data.get('status'),
'statusName': data.get('statusName'),
}
# 提取物料信息(简化版)
pre_intakes = data.get('preIntakes', [])
if pre_intakes and isinstance(pre_intakes, list):
first_intake = pre_intakes[0]
sample_materials = first_intake.get('sampleMaterials', [])
# 简化物料信息
simplified_materials = []
for material in sample_materials:
if isinstance(material, dict):
mat_info = {
'materialName': material.get('materialName'),
'materialTypeName': material.get('materialTypeName'),
'materialCode': material.get('materialCode'),
'materialLocation': material.get('materialLocation'),
}
# 解析parameters中的关键信息如密度、加料历史等
params_str = material.get('parameters', '{}')
try:
params = json.loads(params_str) if isinstance(params_str, str) else params_str
if isinstance(params, dict):
# 只保留关键参数
if 'density' in params:
mat_info['density'] = params['density']
if 'feedingHistory' in params:
mat_info['feedingHistory'] = params['feedingHistory']
if 'liquidVolume' in params:
mat_info['liquidVolume'] = params['liquidVolume']
if 'm_diamine_tot' in params:
mat_info['m_diamine_tot'] = params['m_diamine_tot']
if 'wt_diamine' in params:
mat_info['wt_diamine'] = params['wt_diamine']
except:
pass
simplified_materials.append(mat_info)
simplified['sampleMaterials'] = simplified_materials
# 提取extraProperties中的实际值
extra_props = first_intake.get('extraProperties', {})
if isinstance(extra_props, dict):
simplified_extra = {}
for key, value in extra_props.items():
try:
parsed_value = json.loads(value) if isinstance(value, str) else value
simplified_extra[key] = parsed_value
except:
simplified_extra[key] = value
simplified['extraProperties'] = simplified_extra
return {
'data': simplified,
'code': report.get('code'),
'message': report.get('message'),
'timestamp': report.get('timestamp')
}
def scheduler_start(self) -> dict:
"""启动调度器 - 启动Bioyond工作站的任务调度器开始执行队列中的任务
Returns:
dict: 包含return_info的字典return_info为整型(1=成功)
Raises:
BioyondException: 调度器启动失败时抛出异常
"""
result = self.hardware_interface.scheduler_start()
self.hardware_interface._logger.info(f"调度器启动结果: {result}")
if result != 1:
error_msg = "启动调度器失败: 有未处理错误调度无法启动。请检查Bioyond系统状态。"
self.hardware_interface._logger.error(error_msg)
raise BioyondException(error_msg)
return {"return_info": result}
# 等待多个任务完成并获取实验报告 # 等待多个任务完成并获取实验报告
def wait_for_multiple_orders_and_get_reports(self, def wait_for_multiple_orders_and_get_reports(self,
batch_create_result: str = None, batch_create_result: str = None,
@@ -1455,12 +1002,7 @@ class BioyondDispensingStation(BioyondWorkstation):
# 验证batch_create_result参数 # 验证batch_create_result参数
if not batch_create_result or batch_create_result == "": if not batch_create_result or batch_create_result == "":
raise BioyondException( raise BioyondException("batch_create_result参数为空请确保从batch_create节点正确连接handle")
"batch_create_result参数为空请确保:\n"
"1. batch_create节点与wait节点之间正确连接了handle\n"
"2. batch_create节点成功执行并返回了结果\n"
"3. 检查上游batch_create任务是否成功创建了订单"
)
# 解析batch_create_result JSON对象 # 解析batch_create_result JSON对象
try: try:
@@ -1489,17 +1031,7 @@ class BioyondDispensingStation(BioyondWorkstation):
# 验证提取的数据 # 验证提取的数据
if not order_codes: if not order_codes:
self.hardware_interface._logger.error( raise BioyondException("batch_create_result中未找到order_codes字段或为空")
f"batch_create任务未生成任何订单。batch_create_result内容: {batch_create_result}"
)
raise BioyondException(
"batch_create_result中未找到order_codes或为空。\n"
"可能的原因:\n"
"1. batch_create任务执行失败检查任务是否报错\n"
"2. 物料配置问题(如'物料样品板分配失败'\n"
"3. Bioyond系统状态异常\n"
f"请检查batch_create任务的执行结果"
)
if not order_ids: if not order_ids:
raise BioyondException("batch_create_result中未找到order_ids字段或为空") raise BioyondException("batch_create_result中未找到order_ids字段或为空")
@@ -1582,8 +1114,6 @@ class BioyondDispensingStation(BioyondWorkstation):
self.hardware_interface._logger.info( self.hardware_interface._logger.info(
f"成功获取任务 {order_code} 的实验报告" f"成功获取任务 {order_code} 的实验报告"
) )
# 简化报告,去除冗余信息
report = self._simplify_report(report)
reports.append({ reports.append({
"order_code": order_code, "order_code": order_code,
@@ -1758,7 +1288,7 @@ class BioyondDispensingStation(BioyondWorkstation):
f"开始执行批量物料转移: {len(transfer_groups)}组任务 -> {target_device_id}" f"开始执行批量物料转移: {len(transfer_groups)}组任务 -> {target_device_id}"
) )
warehouse_mapping = self.bioyond_config.get("warehouse_mapping", {}) from .config import WAREHOUSE_MAPPING
results = [] results = []
successful_count = 0 successful_count = 0
failed_count = 0 failed_count = 0

View File

@@ -6,7 +6,6 @@ Bioyond Workstation Implementation
""" """
import time import time
import traceback import traceback
import threading
from datetime import datetime from datetime import datetime
from typing import Dict, Any, List, Optional, Union from typing import Dict, Any, List, Optional, Union
import json import json
@@ -28,90 +27,6 @@ from pylabrobot.resources.resource import Resource as ResourcePLR
from unilabos.devices.workstation.workstation_http_service import WorkstationHTTPService from unilabos.devices.workstation.workstation_http_service import WorkstationHTTPService
class ConnectionMonitor:
"""Bioyond连接监控器"""
def __init__(self, workstation, check_interval=30):
self.workstation = workstation
self.check_interval = check_interval
self._running = False
self._thread = None
self._last_status = "unknown"
def start(self):
if self._running:
return
self._running = True
self._thread = threading.Thread(target=self._monitor_loop, daemon=True, name="BioyondConnectionMonitor")
self._thread.start()
logger.info("Bioyond连接监控器已启动")
def stop(self):
self._running = False
if self._thread:
self._thread.join(timeout=2)
logger.info("Bioyond连接监控器已停止")
def _monitor_loop(self):
while self._running:
try:
# 使用 lightweight API 检查连接
# query_matial_type_list 是比较快的查询
start_time = time.time()
result = self.workstation.hardware_interface.material_type_list()
status = "online" if result else "offline"
msg = "Connection established" if status == "online" else "Failed to get material type list"
if status != self._last_status:
logger.info(f"Bioyond连接状态变更: {self._last_status} -> {status}")
self._publish_event(status, msg)
self._last_status = status
# 发布心跳 (可选,或者只在状态变更时发布)
# self._publish_event(status, msg)
except Exception as e:
logger.error(f"Bioyond连接检查异常: {e}")
if self._last_status != "error":
self._publish_event("error", str(e))
self._last_status = "error"
time.sleep(self.check_interval)
def _publish_event(self, status, message):
try:
if hasattr(self.workstation, "_ros_node") and self.workstation._ros_node:
event_data = {
"status": status,
"message": message,
"timestamp": datetime.now().isoformat()
}
# 动态发布消息,需要在 ROS2DeviceNode 中有对应支持
# 这里假设通用事件发布机制,使用 String 类型的 topic
# 话题: /<namespace>/events/device_status
ns = self.workstation._ros_node.namespace
topic = f"{ns}/events/device_status"
# 使用 ROS2DeviceNode 的发布功能
# 如果没有预定义的 publisher需要动态创建
# 注意workstation base node 可能没有自动创建 arbitrary publishers 的机制
# 这里我们先尝试用 String json 发布
# 在 ROS2DeviceNode 中通常需要先 create_publisher
# 为了简单起见,我们检查是否已有 publisher没有则创建
if not hasattr(self.workstation, "_device_status_pub"):
self.workstation._device_status_pub = self.workstation._ros_node.create_publisher(
String, topic, 10
)
self.workstation._device_status_pub.publish(
convert_to_ros_msg(String, json.dumps(event_data, ensure_ascii=False))
)
except Exception as e:
logger.error(f"发布设备状态事件失败: {e}")
class BioyondResourceSynchronizer(ResourceSynchronizer): class BioyondResourceSynchronizer(ResourceSynchronizer):
"""Bioyond资源同步器 """Bioyond资源同步器
@@ -257,8 +172,9 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
else: else:
logger.info(f"[同步→Bioyond] 物料不存在于 Bioyond将创建新物料并入库") logger.info(f"[同步→Bioyond] 物料不存在于 Bioyond将创建新物料并入库")
# 第1步从配置中获取仓库配置 # 第1步获取仓库配置
warehouse_mapping = self.bioyond_config.get("warehouse_mapping", {}) from .config import WAREHOUSE_MAPPING
warehouse_mapping = WAREHOUSE_MAPPING
# 确定目标仓库名称 # 确定目标仓库名称
parent_name = None parent_name = None
@@ -320,20 +236,14 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
# 第2步转换为 Bioyond 格式 # 第2步转换为 Bioyond 格式
logger.info(f"[同步→Bioyond] 🔄 转换物料为 Bioyond 格式...") logger.info(f"[同步→Bioyond] 🔄 转换物料为 Bioyond 格式...")
# 从配置中获取物料默认参数 # 导入物料默认参数配置
material_default_params = self.workstation.bioyond_config.get("material_default_parameters", {}) from .config import MATERIAL_DEFAULT_PARAMETERS
material_type_params = self.workstation.bioyond_config.get("material_type_parameters", {})
# 合并参数配置:物料名称参数 + typeId参数转换为 type:<uuid> 格式)
merged_params = material_default_params.copy()
for type_id, params in material_type_params.items():
merged_params[f"type:{type_id}"] = params
bioyond_material = resource_plr_to_bioyond( bioyond_material = resource_plr_to_bioyond(
[resource], [resource],
type_mapping=self.workstation.bioyond_config["material_type_mappings"], type_mapping=self.workstation.bioyond_config["material_type_mappings"],
warehouse_mapping=self.workstation.bioyond_config["warehouse_mapping"], warehouse_mapping=self.workstation.bioyond_config["warehouse_mapping"],
material_params=merged_params material_params=MATERIAL_DEFAULT_PARAMETERS
)[0] )[0]
logger.info(f"[同步→Bioyond] 🔧 准备覆盖locations字段目标仓库: {parent_name}, 库位: {update_site}, UUID: {target_location_uuid[:8]}...") logger.info(f"[同步→Bioyond] 🔧 准备覆盖locations字段目标仓库: {parent_name}, 库位: {update_site}, UUID: {target_location_uuid[:8]}...")
@@ -556,20 +466,13 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
return material_bioyond_id return material_bioyond_id
# 转换为 Bioyond 格式 # 转换为 Bioyond 格式
# 从配置中获取物料默认参数 from .config import MATERIAL_DEFAULT_PARAMETERS
material_default_params = self.workstation.bioyond_config.get("material_default_parameters", {})
material_type_params = self.workstation.bioyond_config.get("material_type_parameters", {})
# 合并参数配置:物料名称参数 + typeId参数转换为 type:<uuid> 格式)
merged_params = material_default_params.copy()
for type_id, params in material_type_params.items():
merged_params[f"type:{type_id}"] = params
bioyond_material = resource_plr_to_bioyond( bioyond_material = resource_plr_to_bioyond(
[resource], [resource],
type_mapping=self.workstation.bioyond_config["material_type_mappings"], type_mapping=self.workstation.bioyond_config["material_type_mappings"],
warehouse_mapping=self.workstation.bioyond_config["warehouse_mapping"], warehouse_mapping=self.workstation.bioyond_config["warehouse_mapping"],
material_params=merged_params material_params=MATERIAL_DEFAULT_PARAMETERS
)[0] )[0]
# ⚠️ 关键:创建物料时不设置 locations让 Bioyond 系统暂不分配库位 # ⚠️ 关键:创建物料时不设置 locations让 Bioyond 系统暂不分配库位
@@ -623,7 +526,8 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
logger.info(f"[物料入库] 目标库位: {update_site}") logger.info(f"[物料入库] 目标库位: {update_site}")
# 获取仓库配置和目标库位 UUID # 获取仓库配置和目标库位 UUID
warehouse_mapping = self.workstation.bioyond_config.get("warehouse_mapping", {}) from .config import WAREHOUSE_MAPPING
warehouse_mapping = WAREHOUSE_MAPPING
parent_name = None parent_name = None
target_location_uuid = None target_location_uuid = None
@@ -678,44 +582,6 @@ class BioyondWorkstation(WorkstationBase):
集成Bioyond物料管理的工作站实现 集成Bioyond物料管理的工作站实现
""" """
def _publish_task_status(
self,
task_id: str,
task_type: str,
status: str,
result: dict = None,
progress: float = 0.0,
task_code: str = None
):
"""发布任务状态事件"""
try:
if not getattr(self, "_ros_node", None):
return
event_data = {
"task_id": task_id,
"task_code": task_code,
"task_type": task_type,
"status": status,
"progress": progress,
"timestamp": datetime.now().isoformat()
}
if result:
event_data["result"] = result
topic = f"{self._ros_node.namespace}/events/task_status"
if not hasattr(self, "_task_status_pub"):
self._task_status_pub = self._ros_node.create_publisher(
String, topic, 10
)
self._task_status_pub.publish(
convert_to_ros_msg(String, json.dumps(event_data, ensure_ascii=False))
)
except Exception as e:
logger.error(f"发布任务状态事件失败: {e}")
def __init__( def __init__(
self, self,
bioyond_config: Optional[Dict[str, Any]] = None, bioyond_config: Optional[Dict[str, Any]] = None,
@@ -737,28 +603,10 @@ class BioyondWorkstation(WorkstationBase):
raise ValueError("Deck 配置不能为空,请在配置文件中添加正确的 deck 配置") raise ValueError("Deck 配置不能为空,请在配置文件中添加正确的 deck 配置")
# 初始化 warehouses 属性 # 初始化 warehouses 属性
if not hasattr(self.deck, "warehouses") or self.deck.warehouses is None: self.deck.warehouses = {}
self.deck.warehouses = {} for resource in self.deck.children:
if isinstance(resource, WareHouse):
# 仅当 warehouses 为空时尝试重新扫描(避免覆盖子类的修复) self.deck.warehouses[resource.name] = resource
if not self.deck.warehouses:
for resource in self.deck.children:
# 兼容性增强: 只要是仓库类别或者是 WareHouse 实例均可
is_warehouse = isinstance(resource, WareHouse) or getattr(resource, "category", "") == "warehouse"
# 如果配置中有定义,也可以认定为 warehouse
if not is_warehouse and "warehouse_mapping" in bioyond_config:
if resource.name in bioyond_config["warehouse_mapping"]:
is_warehouse = True
if is_warehouse:
self.deck.warehouses[resource.name] = resource
# 确保 category 被正确设置,方便后续使用
if getattr(resource, "category", "") != "warehouse":
try:
resource.category = "warehouse"
except:
pass
# 创建通信模块 # 创建通信模块
self._create_communication_module(bioyond_config) self._create_communication_module(bioyond_config)
@@ -777,22 +625,18 @@ class BioyondWorkstation(WorkstationBase):
self._set_workflow_mappings(bioyond_config["workflow_mappings"]) self._set_workflow_mappings(bioyond_config["workflow_mappings"])
# 准备 HTTP 报送接收服务配置(延迟到 post_init 启动) # 准备 HTTP 报送接收服务配置(延迟到 post_init 启动)
# 从 bioyond_config 中的 http_service_config 获取 # 从 bioyond_config 中获取,如果没有则使用默认值
http_service_cfg = bioyond_config.get("http_service_config", {})
self._http_service_config = { self._http_service_config = {
"host": http_service_cfg.get("http_service_host", "127.0.0.1"), "host": bioyond_config.get("http_service_host", bioyond_config.get("HTTP_host", "")),
"port": http_service_cfg.get("http_service_port", 8080) "port": bioyond_config.get("http_service_port", bioyond_config.get("HTTP_port", 0))
} }
self.http_service = None # 将在 post_init 启动 self.http_service = None # 将在 post_init 启动
self.connection_monitor = None # 将在 post_init 启动
logger.info(f"Bioyond工作站初始化完成") logger.info(f"Bioyond工作站初始化完成")
def __del__(self): def __del__(self):
"""析构函数:清理资源,停止 HTTP 服务""" """析构函数:清理资源,停止 HTTP 服务"""
try: try:
if hasattr(self, 'connection_monitor') and self.connection_monitor:
self.connection_monitor.stop()
if hasattr(self, 'http_service') and self.http_service is not None: if hasattr(self, 'http_service') and self.http_service is not None:
logger.info("正在停止 HTTP 报送服务...") logger.info("正在停止 HTTP 报送服务...")
self.http_service.stop() self.http_service.stop()
@@ -802,13 +646,6 @@ class BioyondWorkstation(WorkstationBase):
def post_init(self, ros_node: ROS2WorkstationNode): def post_init(self, ros_node: ROS2WorkstationNode):
self._ros_node = ros_node self._ros_node = ros_node
# 启动连接监控
try:
self.connection_monitor = ConnectionMonitor(self)
self.connection_monitor.start()
except Exception as e:
logger.error(f"启动连接监控失败: {e}")
# 启动 HTTP 报送接收服务(现在 device_id 已可用) # 启动 HTTP 报送接收服务(现在 device_id 已可用)
# ⚠️ 检查子类是否已经自己管理 HTTP 服务 # ⚠️ 检查子类是否已经自己管理 HTTP 服务
if self.bioyond_config.get("_disable_auto_http_service"): if self.bioyond_config.get("_disable_auto_http_service"):
@@ -853,14 +690,14 @@ class BioyondWorkstation(WorkstationBase):
def _create_communication_module(self, config: Optional[Dict[str, Any]] = None) -> None: def _create_communication_module(self, config: Optional[Dict[str, Any]] = None) -> None:
"""创建Bioyond通信模块""" """创建Bioyond通信模块"""
# 直接使用传入的配置,不再使用默认值 # 使用传入的 config 参数(来自 bioyond_config
# 所有配置必须从 JSON 文件中提供 # 不再依赖全局变量 API_CONFIG 等
if config: if config:
self.bioyond_config = config self.bioyond_config = config
else: else:
# 如果没有配置,使用空字典(会导致后续错误,但这是预期的 # 如果没有传入配置,创建空配置(用于测试或兼容性
self.bioyond_config = {} self.bioyond_config = {}
print("警告: 未提供 bioyond_config请确保在 JSON 配置文件中提供完整配置")
self.hardware_interface = BioyondV1RPC(self.bioyond_config) self.hardware_interface = BioyondV1RPC(self.bioyond_config)
@@ -1174,15 +1011,7 @@ class BioyondWorkstation(WorkstationBase):
workflow_id = self._get_workflow(actual_workflow_name) workflow_id = self._get_workflow(actual_workflow_name)
if workflow_id: if workflow_id:
# 兼容 BioyondReactionStation 中 workflow_sequence 被重写为 property 的情况 self.workflow_sequence.append(workflow_id)
if isinstance(self.workflow_sequence, list):
self.workflow_sequence.append(workflow_id)
elif hasattr(self, "_cached_workflow_sequence") and isinstance(self._cached_workflow_sequence, list):
self._cached_workflow_sequence.append(workflow_id)
else:
print(f"❌ 无法添加工作流: workflow_sequence 类型错误 {type(self.workflow_sequence)}")
return False
print(f"添加工作流到执行顺序: {actual_workflow_name} -> {workflow_id}") print(f"添加工作流到执行顺序: {actual_workflow_name} -> {workflow_id}")
return True return True
return False return False
@@ -1383,22 +1212,6 @@ class BioyondWorkstation(WorkstationBase):
# TODO: 根据实际业务需求处理步骤完成逻辑 # TODO: 根据实际业务需求处理步骤完成逻辑
# 例如:更新数据库、触发后续流程等 # 例如:更新数据库、触发后续流程等
# 发布任务状态事件 (running/progress update)
self._publish_task_status(
task_id=data.get('orderCode'), # 使用 OrderCode 作为关联 ID
task_code=data.get('orderCode'),
task_type="bioyond_step",
status="running",
progress=0.5, # 步骤完成视为任务进行中
result={"step_name": data.get('stepName'), "step_id": data.get('stepId')}
)
# 更新物料信息
# 步骤完成后,物料状态可能发生变化(如位置、用量等),触发同步
logger.info(f"[步骤完成报送] 触发物料同步...")
self.resource_synchronizer.sync_from_external()
return { return {
"processed": True, "processed": True,
"step_id": data.get('stepId'), "step_id": data.get('stepId'),
@@ -1433,17 +1246,6 @@ class BioyondWorkstation(WorkstationBase):
# TODO: 根据实际业务需求处理通量完成逻辑 # TODO: 根据实际业务需求处理通量完成逻辑
# 发布任务状态事件
self._publish_task_status(
task_id=data.get('orderCode'),
task_code=data.get('orderCode'),
task_type="bioyond_sample",
status="running",
progress=0.7,
result={"sample_id": data.get('sampleId'), "status": status_desc}
)
return { return {
"processed": True, "processed": True,
"sample_id": data.get('sampleId'), "sample_id": data.get('sampleId'),
@@ -1483,32 +1285,6 @@ class BioyondWorkstation(WorkstationBase):
# TODO: 根据实际业务需求处理任务完成逻辑 # TODO: 根据实际业务需求处理任务完成逻辑
# 例如:更新物料库存、生成报表等 # 例如:更新物料库存、生成报表等
# 映射状态到事件状态
event_status = "completed"
if str(data.get('status')) in ["-11", "-12"]:
event_status = "error"
elif str(data.get('status')) == "30":
event_status = "completed"
else:
event_status = "running" # 其他状态视为运行中(或根据实际定义)
# 发布任务状态事件
self._publish_task_status(
task_id=data.get('orderCode'),
task_code=data.get('orderCode'),
task_type="bioyond_order",
status=event_status,
progress=1.0 if event_status in ["completed", "error"] else 0.9,
result={"order_name": data.get('orderName'), "status": status_desc, "materials_count": len(used_materials)}
)
# 更新物料信息
# 任务完成后,且状态为完成时,触发同步以更新最终物料状态
if event_status == "completed":
logger.info(f"[任务完成报送] 触发物料同步...")
self.resource_synchronizer.sync_from_external()
return { return {
"processed": True, "processed": True,
"order_code": data.get('orderCode'), "order_code": data.get('orderCode'),

View File

@@ -459,12 +459,12 @@ class WorkstationHTTPHandler(BaseHTTPRequestHandler):
# 验证必需字段 # 验证必需字段
if 'brand' in request_data: if 'brand' in request_data:
if request_data['brand'] == "bioyond": # 奔曜 if request_data['brand'] == "bioyond": # 奔曜
material_data = request_data["text"] error_msg = request_data["text"]
logger.info(f"收到奔曜物料变更报送: {material_data}") logger.info(f"收到奔曜错误处理报送: {error_msg}")
return HttpResponse( return HttpResponse(
success=True, success=True,
message=f"物料变更报送已收到: {material_data}", message=f"错误处理报送已收到: {error_msg}",
acknowledgment_id=f"MATERIAL_{int(time.time() * 1000)}_{material_data.get('id', 'unknown')}", acknowledgment_id=f"ERROR_{int(time.time() * 1000)}_{error_msg.get('action_id', 'unknown')}",
data=None data=None
) )
else: else:

View File

@@ -0,0 +1,589 @@
workstation.bioyond_dispensing_station:
category:
- workstation
- bioyond
class:
action_value_mappings:
auto-batch_create_90_10_vial_feeding_tasks:
feedback: {}
goal: {}
goal_default:
delay_time: null
hold_m_name: null
liquid_material_name: NMP
speed: null
temperature: null
titration: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
delay_time:
type: string
hold_m_name:
type: string
liquid_material_name:
default: NMP
type: string
speed:
type: string
temperature:
type: string
titration:
type: string
required:
- titration
type: object
result: {}
required:
- goal
title: batch_create_90_10_vial_feeding_tasks参数
type: object
type: UniLabJsonCommand
auto-batch_create_diamine_solution_tasks:
feedback: {}
goal: {}
goal_default:
delay_time: null
liquid_material_name: NMP
solutions: null
speed: null
temperature: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
delay_time:
type: string
liquid_material_name:
default: NMP
type: string
solutions:
type: string
speed:
type: string
temperature:
type: string
required:
- solutions
type: object
result: {}
required:
- goal
title: batch_create_diamine_solution_tasks参数
type: object
type: UniLabJsonCommand
auto-brief_step_parameters:
feedback: {}
goal: {}
goal_default:
data: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
data:
type: object
required:
- data
type: object
result: {}
required:
- goal
title: brief_step_parameters参数
type: object
type: UniLabJsonCommand
auto-compute_experiment_design:
feedback: {}
goal: {}
goal_default:
m_tot: '70'
ratio: null
titration_percent: '0.03'
wt_percent: '0.25'
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
m_tot:
default: '70'
type: string
ratio:
type: object
titration_percent:
default: '0.03'
type: string
wt_percent:
default: '0.25'
type: string
required:
- ratio
type: object
result:
properties:
feeding_order:
items: {}
title: Feeding Order
type: array
return_info:
title: Return Info
type: string
solutions:
items: {}
title: Solutions
type: array
solvents:
additionalProperties: true
title: Solvents
type: object
titration:
additionalProperties: true
title: Titration
type: object
required:
- solutions
- titration
- solvents
- feeding_order
- return_info
title: ComputeExperimentDesignReturn
type: object
required:
- goal
title: compute_experiment_design参数
type: object
type: UniLabJsonCommand
auto-process_order_finish_report:
feedback: {}
goal: {}
goal_default:
report_request: null
used_materials: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
report_request:
type: string
used_materials:
type: string
required:
- report_request
- used_materials
type: object
result: {}
required:
- goal
title: process_order_finish_report参数
type: object
type: UniLabJsonCommand
auto-project_order_report:
feedback: {}
goal: {}
goal_default:
order_id: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
order_id:
type: string
required:
- order_id
type: object
result: {}
required:
- goal
title: project_order_report参数
type: object
type: UniLabJsonCommand
auto-query_resource_by_name:
feedback: {}
goal: {}
goal_default:
material_name: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
material_name:
type: string
required:
- material_name
type: object
result: {}
required:
- goal
title: query_resource_by_name参数
type: object
type: UniLabJsonCommand
auto-transfer_materials_to_reaction_station:
feedback: {}
goal: {}
goal_default:
target_device_id: null
transfer_groups: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
target_device_id:
type: string
transfer_groups:
type: array
required:
- target_device_id
- transfer_groups
type: object
result: {}
required:
- goal
title: transfer_materials_to_reaction_station参数
type: object
type: UniLabJsonCommand
auto-wait_for_multiple_orders_and_get_reports:
feedback: {}
goal: {}
goal_default:
batch_create_result: null
check_interval: 10
timeout: 7200
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
batch_create_result:
type: string
check_interval:
default: 10
type: integer
timeout:
default: 7200
type: integer
required: []
type: object
result: {}
required:
- goal
title: wait_for_multiple_orders_and_get_reports参数
type: object
type: UniLabJsonCommand
auto-workflow_sample_locations:
feedback: {}
goal: {}
goal_default:
workflow_id: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
workflow_id:
type: string
required:
- workflow_id
type: object
result: {}
required:
- goal
title: workflow_sample_locations参数
type: object
type: UniLabJsonCommand
create_90_10_vial_feeding_task:
feedback: {}
goal:
delay_time: delay_time
hold_m_name: hold_m_name
order_name: order_name
percent_10_1_assign_material_name: percent_10_1_assign_material_name
percent_10_1_liquid_material_name: percent_10_1_liquid_material_name
percent_10_1_target_weigh: percent_10_1_target_weigh
percent_10_1_volume: percent_10_1_volume
percent_10_2_assign_material_name: percent_10_2_assign_material_name
percent_10_2_liquid_material_name: percent_10_2_liquid_material_name
percent_10_2_target_weigh: percent_10_2_target_weigh
percent_10_2_volume: percent_10_2_volume
percent_10_3_assign_material_name: percent_10_3_assign_material_name
percent_10_3_liquid_material_name: percent_10_3_liquid_material_name
percent_10_3_target_weigh: percent_10_3_target_weigh
percent_10_3_volume: percent_10_3_volume
percent_90_1_assign_material_name: percent_90_1_assign_material_name
percent_90_1_target_weigh: percent_90_1_target_weigh
percent_90_2_assign_material_name: percent_90_2_assign_material_name
percent_90_2_target_weigh: percent_90_2_target_weigh
percent_90_3_assign_material_name: percent_90_3_assign_material_name
percent_90_3_target_weigh: percent_90_3_target_weigh
speed: speed
temperature: temperature
goal_default:
delay_time: ''
hold_m_name: ''
order_name: ''
percent_10_1_assign_material_name: ''
percent_10_1_liquid_material_name: ''
percent_10_1_target_weigh: ''
percent_10_1_volume: ''
percent_10_2_assign_material_name: ''
percent_10_2_liquid_material_name: ''
percent_10_2_target_weigh: ''
percent_10_2_volume: ''
percent_10_3_assign_material_name: ''
percent_10_3_liquid_material_name: ''
percent_10_3_target_weigh: ''
percent_10_3_volume: ''
percent_90_1_assign_material_name: ''
percent_90_1_target_weigh: ''
percent_90_2_assign_material_name: ''
percent_90_2_target_weigh: ''
percent_90_3_assign_material_name: ''
percent_90_3_target_weigh: ''
speed: ''
temperature: ''
handles: {}
result:
return_info: return_info
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: DispenStationVialFeed_Feedback
type: object
goal:
properties:
delay_time:
type: string
hold_m_name:
type: string
order_name:
type: string
percent_10_1_assign_material_name:
type: string
percent_10_1_liquid_material_name:
type: string
percent_10_1_target_weigh:
type: string
percent_10_1_volume:
type: string
percent_10_2_assign_material_name:
type: string
percent_10_2_liquid_material_name:
type: string
percent_10_2_target_weigh:
type: string
percent_10_2_volume:
type: string
percent_10_3_assign_material_name:
type: string
percent_10_3_liquid_material_name:
type: string
percent_10_3_target_weigh:
type: string
percent_10_3_volume:
type: string
percent_90_1_assign_material_name:
type: string
percent_90_1_target_weigh:
type: string
percent_90_2_assign_material_name:
type: string
percent_90_2_target_weigh:
type: string
percent_90_3_assign_material_name:
type: string
percent_90_3_target_weigh:
type: string
speed:
type: string
temperature:
type: string
required:
- order_name
- percent_90_1_assign_material_name
- percent_90_1_target_weigh
- percent_90_2_assign_material_name
- percent_90_2_target_weigh
- percent_90_3_assign_material_name
- percent_90_3_target_weigh
- percent_10_1_assign_material_name
- percent_10_1_target_weigh
- percent_10_1_volume
- percent_10_1_liquid_material_name
- percent_10_2_assign_material_name
- percent_10_2_target_weigh
- percent_10_2_volume
- percent_10_2_liquid_material_name
- percent_10_3_assign_material_name
- percent_10_3_target_weigh
- percent_10_3_volume
- percent_10_3_liquid_material_name
- speed
- temperature
- delay_time
- hold_m_name
title: DispenStationVialFeed_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: DispenStationVialFeed_Result
type: object
required:
- goal
title: DispenStationVialFeed
type: object
type: DispenStationVialFeed
create_diamine_solution_task:
feedback: {}
goal:
delay_time: delay_time
hold_m_name: hold_m_name
liquid_material_name: liquid_material_name
material_name: material_name
order_name: order_name
speed: speed
target_weigh: target_weigh
temperature: temperature
volume: volume
goal_default:
delay_time: ''
hold_m_name: ''
liquid_material_name: ''
material_name: ''
order_name: ''
speed: ''
target_weigh: ''
temperature: ''
volume: ''
handles: {}
result:
return_info: return_info
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: DispenStationSolnPrep_Feedback
type: object
goal:
properties:
delay_time:
type: string
hold_m_name:
type: string
liquid_material_name:
type: string
material_name:
type: string
order_name:
type: string
speed:
type: string
target_weigh:
type: string
temperature:
type: string
volume:
type: string
required:
- order_name
- material_name
- target_weigh
- volume
- liquid_material_name
- speed
- temperature
- delay_time
- hold_m_name
title: DispenStationSolnPrep_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: DispenStationSolnPrep_Result
type: object
required:
- goal
title: DispenStationSolnPrep
type: object
type: DispenStationSolnPrep
module: unilabos.devices.workstation.bioyond_studio.dispensing_station:BioyondDispensingStation
status_types: {}
type: python
config_info: []
description: ''
handles: []
icon: ''
init_param_schema:
config:
properties:
config:
type: string
deck:
type: string
required:
- config
- deck
type: object
data:
properties: {}
required: []
type: object
version: 1.0.0

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@@ -30,6 +30,71 @@ bioyond_dispensing_station:
title: brief_step_parameters参数 title: brief_step_parameters参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
auto-compute_experiment_design:
feedback: {}
goal: {}
goal_default:
m_tot: '70'
ratio: null
titration_percent: '0.03'
wt_percent: '0.25'
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
m_tot:
default: '70'
type: string
ratio:
type: object
titration_percent:
default: '0.03'
type: string
wt_percent:
default: '0.25'
type: string
required:
- ratio
type: object
result:
properties:
feeding_order:
items: {}
title: Feeding Order
type: array
return_info:
title: Return Info
type: string
solutions:
items: {}
title: Solutions
type: array
solvents:
additionalProperties: true
title: Solvents
type: object
titration:
additionalProperties: true
title: Titration
type: object
required:
- solutions
- titration
- solvents
- feeding_order
- return_info
title: ComputeExperimentDesignReturn
type: object
required:
- goal
title: compute_experiment_design参数
type: object
type: UniLabJsonCommand
auto-process_order_finish_report: auto-process_order_finish_report:
feedback: {} feedback: {}
goal: {} goal: {}
@@ -109,6 +174,35 @@ bioyond_dispensing_station:
title: query_resource_by_name参数 title: query_resource_by_name参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
auto-transfer_materials_to_reaction_station:
feedback: {}
goal: {}
goal_default:
target_device_id: null
transfer_groups: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
target_device_id:
type: string
transfer_groups:
type: array
required:
- target_device_id
- transfer_groups
type: object
result: {}
required:
- goal
title: transfer_materials_to_reaction_station参数
type: object
type: UniLabJsonCommand
auto-workflow_sample_locations: auto-workflow_sample_locations:
feedback: {} feedback: {}
goal: {} goal: {}
@@ -300,99 +394,6 @@ bioyond_dispensing_station:
title: BatchCreateDiamineSolutionTasks title: BatchCreateDiamineSolutionTasks
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
compute_experiment_design:
feedback: {}
goal:
m_tot: m_tot
ratio: ratio
titration_percent: titration_percent
wt_percent: wt_percent
goal_default:
m_tot: '70'
ratio: ''
titration_percent: '0.03'
wt_percent: '0.25'
handles:
output:
- data_key: solutions
data_source: executor
data_type: array
handler_key: solutions
io_type: sink
label: Solution Data From Python
- data_key: titration
data_source: executor
data_type: object
handler_key: titration
io_type: sink
label: Titration Data From Calculation Node
- data_key: solvents
data_source: executor
data_type: object
handler_key: solvents
io_type: sink
label: Solvents Data From Calculation Node
- data_key: feeding_order
data_source: executor
data_type: array
handler_key: feeding_order
io_type: sink
label: Feeding Order Data From Calculation Node
result:
feeding_order: feeding_order
return_info: return_info
solutions: solutions
solvents: solvents
titration: titration
schema:
description: 计算实验设计输出solutions/titration/solvents/feeding_order用于后续节点。
properties:
feedback: {}
goal:
properties:
m_tot:
default: '70'
description: 总质量(g)
type: string
ratio:
description: 组分摩尔比的对象,保持输入顺序,如{"MDA":1,"BTDA":1}
type: string
titration_percent:
default: '0.03'
description: 滴定比例(10%部分)
type: string
wt_percent:
default: '0.25'
description: 目标固含质量分数
type: string
required:
- ratio
type: object
result:
properties:
feeding_order:
type: array
return_info:
type: string
solutions:
type: array
solvents:
type: object
titration:
type: object
required:
- solutions
- titration
- solvents
- feeding_order
- return_info
title: ComputeExperimentDesign_Result
type: object
required:
- goal
title: ComputeExperimentDesign
type: object
type: UniLabJsonCommand
create_90_10_vial_feeding_task: create_90_10_vial_feeding_task:
feedback: {} feedback: {}
goal: goal:
@@ -619,89 +620,6 @@ bioyond_dispensing_station:
title: DispenStationSolnPrep title: DispenStationSolnPrep
type: object type: object
type: DispenStationSolnPrep type: DispenStationSolnPrep
scheduler_start:
feedback: {}
goal: {}
goal_default: {}
handles: {}
result:
return_info: return_info
schema:
description: 启动调度器 - 启动Bioyond配液站的任务调度器开始执行队列中的任务
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result:
properties:
return_info:
description: 调度器启动结果成功返回1失败返回0
type: integer
required:
- return_info
title: scheduler_start结果
type: object
required:
- goal
title: scheduler_start参数
type: object
type: UniLabJsonCommand
transfer_materials_to_reaction_station:
feedback: {}
goal:
target_device_id: target_device_id
transfer_groups: transfer_groups
goal_default:
target_device_id: ''
transfer_groups: ''
handles: {}
placeholder_keys:
target_device_id: unilabos_devices
result: {}
schema:
description: 将配液站完成的物料(溶液、样品等)转移到指定反应站的堆栈库位。支持配置多组转移任务,每组包含物料名称、目标堆栈和目标库位。
properties:
feedback: {}
goal:
properties:
target_device_id:
description: 目标反应站设备ID从设备列表中选择所有转移组都使用同一个目标设备
type: string
transfer_groups:
description: 转移任务组列表,每组包含物料名称、目标堆栈和目标库位,可以添加多组
items:
properties:
materials:
description: 物料名称手动输入系统将通过RPC查询验证
type: string
target_sites:
description: 目标库位(手动输入,如"A01"
type: string
target_stack:
description: 目标堆栈名称(从列表选择)
enum:
- 堆栈1左
- 堆栈1右
- 站内试剂存放堆栈
type: string
required:
- materials
- target_stack
- target_sites
type: object
type: array
required:
- target_device_id
- transfer_groups
type: object
result: {}
required:
- goal
title: transfer_materials_to_reaction_station参数
type: object
type: UniLabJsonCommand
wait_for_multiple_orders_and_get_reports: wait_for_multiple_orders_and_get_reports:
feedback: {} feedback: {}
goal: goal:
@@ -770,7 +688,7 @@ bioyond_dispensing_station:
title: WaitForMultipleOrdersAndGetReports title: WaitForMultipleOrdersAndGetReports
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
module: unilabos.devices.workstation.bioyond_studio.dispensing_station.dispensing_station:BioyondDispensingStation module: unilabos.devices.workstation.bioyond_studio.dispensing_station:BioyondDispensingStation
status_types: {} status_types: {}
type: python type: python
config_info: [] config_info: []
@@ -781,16 +699,15 @@ bioyond_dispensing_station:
config: config:
properties: properties:
config: config:
type: object type: string
deck: deck:
type: string type: string
protocol_type: required:
type: string - config
required: [] - deck
type: object type: object
data: data:
properties: {} properties: {}
required: [] required: []
type: object type: object
model: {}
version: 1.0.0 version: 1.0.0

View File

@@ -405,7 +405,7 @@ coincellassemblyworkstation_device:
goal: goal:
properties: properties:
bottle_num: bottle_num:
type: string type: integer
required: required:
- bottle_num - bottle_num
type: object type: object

View File

@@ -9278,13 +9278,7 @@ liquid_handler.prcxi:
z: 0.0 z: 0.0
sample_id: '' sample_id: ''
type: '' type: ''
handles: handles: {}
input:
- data_key: wells
data_source: handle
data_type: resource
handler_key: input_wells
label: InputWells
placeholder_keys: placeholder_keys:
wells: unilabos_resources wells: unilabos_resources
result: {} result: {}

View File

@@ -49,7 +49,32 @@ opcua_example:
title: load_config参数 title: load_config参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
auto-refresh_node_values: auto-post_init:
feedback: {}
goal: {}
goal_default:
ros_node: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
ros_node:
type: string
required:
- ros_node
type: object
result: {}
required:
- goal
title: post_init参数
type: object
type: UniLabJsonCommand
auto-print_cache_stats:
feedback: {} feedback: {}
goal: {} goal: {}
goal_default: {} goal_default: {}
@@ -67,7 +92,32 @@ opcua_example:
result: {} result: {}
required: required:
- goal - goal
title: refresh_node_values参数 title: print_cache_stats参数
type: object
type: UniLabJsonCommand
auto-read_node:
feedback: {}
goal: {}
goal_default:
node_name: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
node_name:
type: string
required:
- node_name
type: object
result: {}
required:
- goal
title: read_node参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
auto-set_node_value: auto-set_node_value:
@@ -99,50 +149,9 @@ opcua_example:
title: set_node_value参数 title: set_node_value参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
auto-start_node_refresh:
feedback: {}
goal: {}
goal_default: {}
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: start_node_refresh参数
type: object
type: UniLabJsonCommand
auto-stop_node_refresh:
feedback: {}
goal: {}
goal_default: {}
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: stop_node_refresh参数
type: object
type: UniLabJsonCommand
module: unilabos.device_comms.opcua_client.client:OpcUaClient module: unilabos.device_comms.opcua_client.client:OpcUaClient
status_types: status_types:
cache_stats: dict
node_value: String node_value: String
type: python type: python
config_info: [] config_info: []
@@ -152,15 +161,23 @@ opcua_example:
init_param_schema: init_param_schema:
config: config:
properties: properties:
cache_timeout:
default: 5.0
type: number
config_path: config_path:
type: string type: string
deck:
type: string
password: password:
type: string type: string
refresh_interval: subscription_interval:
default: 1.0 default: 500
type: number type: integer
url: url:
type: string type: string
use_subscription:
default: true
type: boolean
username: username:
type: string type: string
required: required:
@@ -168,9 +185,12 @@ opcua_example:
type: object type: object
data: data:
properties: properties:
cache_stats:
type: object
node_value: node_value:
type: string type: string
required: required:
- node_value - node_value
- cache_stats
type: object type: object
version: 1.0.0 version: 1.0.0

View File

@@ -4,81 +4,6 @@ reaction_station.bioyond:
- reaction_station_bioyond - reaction_station_bioyond
class: class:
action_value_mappings: action_value_mappings:
add_time_constraint:
feedback: {}
goal:
duration: duration
end_point: end_point
end_step_key: end_step_key
start_point: start_point
start_step_key: start_step_key
goal_default:
duration: 0
end_point: 0
end_step_key: ''
start_point: 0
start_step_key: ''
handles: {}
result: {}
schema:
description: 添加时间约束 - 在两个工作流之间添加时间约束
properties:
feedback: {}
goal:
properties:
duration:
description: 时间(秒)
type: integer
end_point:
default: Start
description: 终点计时点 (Start=开始前, End=结束后)
enum:
- Start
- End
type: string
end_step_key:
description: 终点步骤Key (可选, 默认为空则自动选择)
type: string
start_point:
default: Start
description: 起点计时点 (Start=开始前, End=结束后)
enum:
- Start
- End
type: string
start_step_key:
description: 起点步骤Key (例如 "feeding", "liquid", 可选, 默认为空则自动选择)
type: string
required:
- duration
type: object
result: {}
required:
- goal
title: add_time_constraint参数
type: object
type: UniLabJsonCommand
auto-clear_workflows:
feedback: {}
goal: {}
goal_default: {}
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: clear_workflows参数
type: object
type: UniLabJsonCommand
auto-create_order: auto-create_order:
feedback: {} feedback: {}
goal: {} goal: {}
@@ -206,35 +131,6 @@ reaction_station.bioyond:
title: process_web_workflows参数 title: process_web_workflows参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
auto-set_reactor_temperature:
feedback: {}
goal: {}
goal_default:
reactor_id: null
temperature: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
reactor_id:
type: integer
temperature:
type: number
required:
- reactor_id
- temperature
type: object
result: {}
required:
- goal
title: set_reactor_temperature参数
type: object
type: UniLabJsonCommand
auto-skip_titration_steps: auto-skip_titration_steps:
feedback: {} feedback: {}
goal: {} goal: {}
@@ -260,27 +156,6 @@ reaction_station.bioyond:
title: skip_titration_steps参数 title: skip_titration_steps参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
auto-sync_workflow_sequence_from_bioyond:
feedback: {}
goal: {}
goal_default: {}
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: sync_workflow_sequence_from_bioyond参数
type: object
type: UniLabJsonCommand
auto-wait_for_multiple_orders_and_get_reports: auto-wait_for_multiple_orders_and_get_reports:
feedback: {} feedback: {}
goal: {} goal: {}
@@ -313,33 +188,6 @@ reaction_station.bioyond:
title: wait_for_multiple_orders_and_get_reports参数 title: wait_for_multiple_orders_and_get_reports参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
auto-workflow_sequence:
feedback: {}
goal: {}
goal_default:
value: null
handles: {}
placeholder_keys: {}
result: {}
schema:
description: ''
properties:
feedback: {}
goal:
properties:
value:
items:
type: string
type: array
required:
- value
type: object
result: {}
required:
- goal
title: workflow_sequence参数
type: object
type: UniLabJsonCommand
auto-workflow_step_query: auto-workflow_step_query:
feedback: {} feedback: {}
goal: {} goal: {}
@@ -365,36 +213,6 @@ reaction_station.bioyond:
title: workflow_step_query参数 title: workflow_step_query参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
clean_all_server_workflows:
feedback: {}
goal: {}
goal_default: {}
handles: {}
result:
code: code
message: message
schema:
description: 清空服务端所有非核心工作流 (保留核心流程)
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result:
properties:
code:
description: 操作结果代码(1表示成功)
type: integer
message:
description: 结果描述
type: string
type: object
required:
- goal
title: clean_all_server_workflows参数
type: object
type: UniLabJsonCommand
drip_back: drip_back:
feedback: {} feedback: {}
goal: goal:
@@ -429,19 +247,13 @@ reaction_station.bioyond:
description: 观察时间(分钟) description: 观察时间(分钟)
type: string type: string
titration_type: titration_type:
description: 是否滴定(NO=否, YES=是) description: 是否滴定(1=否, 2=是)
enum:
- 'NO'
- 'YES'
type: string type: string
torque_variation: torque_variation:
description: 是否观察 (NO=否, YES=是) description: 是否观察 (1=否, 2=是)
enum:
- 'NO'
- 'YES'
type: string type: string
volume: volume:
description: 分液公式(mL) description: 分液公式(μL)
type: string type: string
required: required:
- volume - volume
@@ -541,19 +353,13 @@ reaction_station.bioyond:
description: 观察时间(分钟) description: 观察时间(分钟)
type: string type: string
titration_type: titration_type:
description: 是否滴定(NO=否, YES=是) description: 是否滴定(1=否, 2=是)
enum:
- 'NO'
- 'YES'
type: string type: string
torque_variation: torque_variation:
description: 是否观察 (NO=否, YES=是) description: 是否观察 (1=否, 2=是)
enum:
- 'NO'
- 'YES'
type: string type: string
volume: volume:
description: 分液公式(mL) description: 分液公式(μL)
type: string type: string
required: required:
- volume - volume
@@ -597,7 +403,7 @@ reaction_station.bioyond:
label: Solvents Data From Calculation Node label: Solvents Data From Calculation Node
result: {} result: {}
schema: schema:
description: 液体投料-溶剂。可以直接提供volume(mL),或通过solvents对象自动从additional_solvent(mL)计算volume。 description: 液体投料-溶剂。可以直接提供volume(μL),或通过solvents对象自动从additional_solvent(mL)计算volume。
properties: properties:
feedback: {} feedback: {}
goal: goal:
@@ -617,21 +423,15 @@ reaction_station.bioyond:
description: 观察时间(分钟),默认360 description: 观察时间(分钟),默认360
type: string type: string
titration_type: titration_type:
default: 'NO' default: '1'
description: 是否滴定(NO=否, YES=是),默认NO description: 是否滴定(1=否, 2=是),默认1
enum:
- 'NO'
- 'YES'
type: string type: string
torque_variation: torque_variation:
default: 'YES' default: '2'
description: 是否观察 (NO=否, YES=是),默认YES description: 是否观察 (1=否, 2=是),默认2
enum:
- 'NO'
- 'YES'
type: string type: string
volume: volume:
description: 分液量(mL)。可直接提供,或通过solvents参数自动计算 description: 分液量(μL)。可直接提供,或通过solvents参数自动计算
type: string type: string
required: required:
- assign_material_name - assign_material_name
@@ -704,21 +504,15 @@ reaction_station.bioyond:
description: 观察时间(分钟),默认90 description: 观察时间(分钟),默认90
type: string type: string
titration_type: titration_type:
default: 'YES' default: '2'
description: 是否滴定(NO=否, YES=是),默认YES description: 是否滴定(1=否, 2=是),默认2
enum:
- 'NO'
- 'YES'
type: string type: string
torque_variation: torque_variation:
default: 'YES' default: '2'
description: 是否观察 (NO=否, YES=是),默认YES description: 是否观察 (1=否, 2=是),默认2
enum:
- 'NO'
- 'YES'
type: string type: string
volume_formula: volume_formula:
description: 分液公式(mL)。可直接提供固定公式,或留空由系统根据x_value、feeding_order_data、extracted_actuals自动生成 description: 分液公式(μL)。可直接提供固定公式,或留空由系统根据x_value、feeding_order_data、extracted_actuals自动生成
type: string type: string
x_value: x_value:
description: 公式中的x值,手工输入,格式为"{{1-2-3}}"(包含双花括号)。用于自动公式计算 description: 公式中的x值,手工输入,格式为"{{1-2-3}}"(包含双花括号)。用于自动公式计算
@@ -766,19 +560,13 @@ reaction_station.bioyond:
description: 观察时间(分钟) description: 观察时间(分钟)
type: string type: string
titration_type: titration_type:
description: 是否滴定(NO=否, YES=是) description: 是否滴定(1=否, 2=是)
enum:
- 'NO'
- 'YES'
type: string type: string
torque_variation: torque_variation:
description: 是否观察 (NO=否, YES=是) description: 是否观察 (1=否, 2=是)
enum:
- 'NO'
- 'YES'
type: string type: string
volume_formula: volume_formula:
description: 分液公式(mL) description: 分液公式(μL)
type: string type: string
required: required:
- volume_formula - volume_formula
@@ -892,35 +680,6 @@ reaction_station.bioyond:
title: reactor_taken_out参数 title: reactor_taken_out参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
scheduler_start:
feedback: {}
goal: {}
goal_default: {}
handles: {}
result:
return_info: return_info
schema:
description: 启动调度器 - 启动Bioyond工作站的任务调度器开始执行队列中的任务
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result:
properties:
return_info:
description: 调度器启动结果成功返回1失败返回0
type: integer
required:
- return_info
title: scheduler_start结果
type: object
required:
- goal
title: scheduler_start参数
type: object
type: UniLabJsonCommand
solid_feeding_vials: solid_feeding_vials:
feedback: {} feedback: {}
goal: goal:
@@ -947,11 +706,7 @@ reaction_station.bioyond:
description: 物料名称(用于获取试剂瓶位ID) description: 物料名称(用于获取试剂瓶位ID)
type: string type: string
material_id: material_id:
description: 粉末类型IDSalt=盐21分钟Flour=面粉27分钟BTDA=BTDA38分钟 description: 粉末类型ID1=盐21分钟2=面粉27分钟3=BTDA38分钟
enum:
- Salt
- Flour
- BTDA
type: string type: string
temperature: temperature:
description: 温度设定(°C) description: 温度设定(°C)
@@ -960,10 +715,7 @@ reaction_station.bioyond:
description: 观察时间(分钟) description: 观察时间(分钟)
type: string type: string
torque_variation: torque_variation:
description: 是否观察 (NO=否, YES=是) description: 是否观察 (1=否, 2=是)
enum:
- 'NO'
- 'YES'
type: string type: string
required: required:
- assign_material_name - assign_material_name
@@ -978,10 +730,10 @@ reaction_station.bioyond:
title: solid_feeding_vials参数 title: solid_feeding_vials参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
module: unilabos.devices.workstation.bioyond_studio.reaction_station.reaction_station:BioyondReactionStation module: unilabos.devices.workstation.bioyond_studio.reaction_station:BioyondReactionStation
protocol_type: [] protocol_type: []
status_types: status_types:
workflow_sequence: str workflow_sequence: String
type: python type: python
config_info: [] config_info: []
description: Bioyond反应站 description: Bioyond反应站
@@ -1001,7 +753,9 @@ reaction_station.bioyond:
data: data:
properties: properties:
workflow_sequence: workflow_sequence:
type: string items:
type: string
type: array
required: required:
- workflow_sequence - workflow_sequence
type: object type: object
@@ -1037,7 +791,7 @@ reaction_station.reactor:
title: update_metrics参数 title: update_metrics参数
type: object type: object
type: UniLabJsonCommand type: UniLabJsonCommand
module: unilabos.devices.workstation.bioyond_studio.reaction_station.reaction_station:BioyondReactor module: unilabos.devices.workstation.bioyond_studio.reaction_station:BioyondReactor
status_types: {} status_types: {}
type: python type: python
config_info: [] config_info: []

File diff suppressed because it is too large Load Diff

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@@ -71,20 +71,6 @@ class Registry:
from unilabos.app.web.utils.action_utils import get_yaml_from_goal_type from unilabos.app.web.utils.action_utils import get_yaml_from_goal_type
# 获取 HostNode 类的增强信息,用于自动生成 action schema
host_node_enhanced_info = get_enhanced_class_info(
"unilabos.ros.nodes.presets.host_node:HostNode", use_dynamic=True
)
# 为 test_latency 生成 schema保留原有 description
test_latency_method_info = host_node_enhanced_info.get("action_methods", {}).get("test_latency", {})
test_latency_schema = self._generate_unilab_json_command_schema(
test_latency_method_info.get("args", []),
"test_latency",
test_latency_method_info.get("return_annotation"),
)
test_latency_schema["description"] = "用于测试延迟的动作,返回延迟时间和时间差。"
self.device_type_registry.update( self.device_type_registry.update(
{ {
"host_node": { "host_node": {
@@ -138,25 +124,11 @@ class Registry:
"output": [ "output": [
{ {
"handler_key": "labware", "handler_key": "labware",
"data_type": "resource",
"label": "Labware", "label": "Labware",
"data_source": "executor",
"data_key": "created_resource_tree.@flatten",
},
{
"handler_key": "liquid_slots",
"data_type": "resource", "data_type": "resource",
"label": "LiquidSlots", "data_source": "handle",
"data_source": "executor", "data_key": "liquid",
"data_key": "liquid_input_resource_tree.@flatten", }
},
{
"handler_key": "materials",
"data_type": "resource",
"label": "AllMaterials",
"data_source": "executor",
"data_key": "[created_resource_tree,liquid_input_resource_tree].@flatten.@flatten",
},
] ]
}, },
"placeholder_keys": { "placeholder_keys": {
@@ -166,19 +138,14 @@ class Registry:
}, },
}, },
"test_latency": { "test_latency": {
"type": ( "type": self.EmptyIn,
"UniLabJsonCommandAsync"
if test_latency_method_info.get("is_async", False)
else "UniLabJsonCommand"
),
"goal": {}, "goal": {},
"feedback": {}, "feedback": {},
"result": {}, "result": {},
"schema": test_latency_schema, "schema": ros_action_to_json_schema(
"goal_default": { self.EmptyIn, "用于测试延迟的动作,返回延迟时间和时间差。"
arg["name"]: arg["default"] ),
for arg in test_latency_method_info.get("args", []) "goal_default": {},
},
"handles": {}, "handles": {},
}, },
"auto-test_resource": { "auto-test_resource": {
@@ -219,17 +186,7 @@ class Registry:
"resources": "unilabos_resources", "resources": "unilabos_resources",
}, },
"goal_default": {}, "goal_default": {},
"handles": { "handles": {},
"input": [
{
"handler_key": "input_resources",
"data_type": "resource",
"label": "InputResources",
"data_source": "handle",
"data_key": "resources", # 不为空
},
]
},
}, },
}, },
}, },
@@ -498,11 +455,7 @@ class Registry:
return status_schema return status_schema
def _generate_unilab_json_command_schema( def _generate_unilab_json_command_schema(
self, self, method_args: List[Dict[str, Any]], method_name: str, return_annotation: Any = None
method_args: List[Dict[str, Any]],
method_name: str,
return_annotation: Any = None,
previous_schema: Dict[str, Any] | None = None,
) -> Dict[str, Any]: ) -> Dict[str, Any]:
""" """
根据UniLabJsonCommand方法信息生成JSON Schema暂不支持嵌套类型 根据UniLabJsonCommand方法信息生成JSON Schema暂不支持嵌套类型
@@ -511,7 +464,6 @@ class Registry:
method_args: 方法信息字典包含args等 method_args: 方法信息字典包含args等
method_name: 方法名称 method_name: 方法名称
return_annotation: 返回类型注解用于生成result schema仅支持TypedDict return_annotation: 返回类型注解用于生成result schema仅支持TypedDict
previous_schema: 之前的 schema用于保留 goal/feedback/result 下一级字段的 description
Returns: Returns:
JSON Schema格式的参数schema JSON Schema格式的参数schema
@@ -545,7 +497,7 @@ class Registry:
if return_annotation is not None and self._is_typed_dict(return_annotation): if return_annotation is not None and self._is_typed_dict(return_annotation):
result_schema = self._generate_typed_dict_result_schema(return_annotation) result_schema = self._generate_typed_dict_result_schema(return_annotation)
final_schema = { return {
"title": f"{method_name}参数", "title": f"{method_name}参数",
"description": f"", "description": f"",
"type": "object", "type": "object",
@@ -553,40 +505,6 @@ class Registry:
"required": ["goal"], "required": ["goal"],
} }
# 保留之前 schema 中 goal/feedback/result 下一级字段的 description
if previous_schema:
self._preserve_field_descriptions(final_schema, previous_schema)
return final_schema
def _preserve_field_descriptions(self, new_schema: Dict[str, Any], previous_schema: Dict[str, Any]) -> None:
"""
保留之前 schema 中 goal/feedback/result 下一级字段的 description 和 title
Args:
new_schema: 新生成的 schema会被修改
previous_schema: 之前的 schema
"""
for section in ["goal", "feedback", "result"]:
new_section = new_schema.get("properties", {}).get(section, {})
prev_section = previous_schema.get("properties", {}).get(section, {})
if not new_section or not prev_section:
continue
new_props = new_section.get("properties", {})
prev_props = prev_section.get("properties", {})
for field_name, field_schema in new_props.items():
if field_name in prev_props:
prev_field = prev_props[field_name]
# 保留字段的 description
if "description" in prev_field and prev_field["description"]:
field_schema["description"] = prev_field["description"]
# 保留字段的 title用户自定义的中文名
if "title" in prev_field and prev_field["title"]:
field_schema["title"] = prev_field["title"]
def _is_typed_dict(self, annotation: Any) -> bool: def _is_typed_dict(self, annotation: Any) -> bool:
""" """
检查类型注解是否是TypedDict 检查类型注解是否是TypedDict
@@ -755,10 +673,13 @@ class Registry:
sorted(device_config["class"]["status_types"].items()) sorted(device_config["class"]["status_types"].items())
) )
if complete_registry: if complete_registry:
# 保存原有的 action 配置(用于保留 schema 的 description 和 handles 等) # 保存原有的description信息
old_action_configs = {} old_descriptions = {}
for action_name, action_config in device_config["class"]["action_value_mappings"].items(): for action_name, action_config in device_config["class"]["action_value_mappings"].items():
old_action_configs[action_name] = action_config if "description" in action_config.get("schema", {}):
description = action_config["schema"]["description"]
if len(description):
old_descriptions[action_name] = action_config["schema"]["description"]
device_config["class"]["action_value_mappings"] = { device_config["class"]["action_value_mappings"] = {
k: v k: v
@@ -774,15 +695,10 @@ class Registry:
"feedback": {}, "feedback": {},
"result": {}, "result": {},
"schema": self._generate_unilab_json_command_schema( "schema": self._generate_unilab_json_command_schema(
v["args"], v["args"], k, v.get("return_annotation")
k,
v.get("return_annotation"),
# 传入旧的 schema 以保留字段 description
old_action_configs.get(f"auto-{k}", {}).get("schema"),
), ),
"goal_default": {i["name"]: i["default"] for i in v["args"]}, "goal_default": {i["name"]: i["default"] for i in v["args"]},
# 保留原有的 handles 配置 "handles": [],
"handles": old_action_configs.get(f"auto-{k}", {}).get("handles", []),
"placeholder_keys": { "placeholder_keys": {
i["name"]: ( i["name"]: (
"unilabos_resources" "unilabos_resources"
@@ -806,14 +722,12 @@ class Registry:
if k not in device_config["class"]["action_value_mappings"] if k not in device_config["class"]["action_value_mappings"]
} }
) )
# 恢复原有的 description 信息(auto- 开头的动作 # 恢复原有的description信息auto开头的不修改
for action_name, old_config in old_action_configs.items(): for action_name, description in old_descriptions.items():
if action_name in device_config["class"]["action_value_mappings"]: # 有一些会被删除 if action_name in device_config["class"]["action_value_mappings"]: # 有一些会被删除
old_schema = old_config.get("schema", {}) device_config["class"]["action_value_mappings"][action_name]["schema"][
if "description" in old_schema and old_schema["description"]: "description"
device_config["class"]["action_value_mappings"][action_name]["schema"][ ] = description
"description"
] = old_schema["description"]
device_config["init_param_schema"] = {} device_config["init_param_schema"] = {}
device_config["init_param_schema"]["config"] = self._generate_unilab_json_command_schema( device_config["init_param_schema"]["config"] = self._generate_unilab_json_command_schema(
enhanced_info["init_params"], "__init__" enhanced_info["init_params"], "__init__"

View File

@@ -20,17 +20,6 @@ BIOYOND_PolymerStation_Liquid_Vial:
icon: '' icon: ''
init_param_schema: {} init_param_schema: {}
version: 1.0.0 version: 1.0.0
BIOYOND_PolymerStation_Measurement_Vial:
category:
- bottles
class:
module: unilabos.resources.bioyond.bottles:BIOYOND_PolymerStation_Measurement_Vial
type: pylabrobot
description: 聚合站-测量小瓶(测密度)
handles: []
icon: ''
init_param_schema: {}
version: 1.0.0
BIOYOND_PolymerStation_Reactor: BIOYOND_PolymerStation_Reactor:
category: category:
- bottles - bottles

View File

@@ -84,12 +84,12 @@ def bioyond_warehouse_reagent_storage(name: str) -> WareHouse:
) )
def bioyond_warehouse_tipbox_storage(name: str) -> WareHouse: def bioyond_warehouse_tipbox_storage(name: str) -> WareHouse:
"""创建BioYond站内Tip盒堆栈A01B03, 2行×3列""" """创建BioYond站内Tip盒堆栈A01B03),用于存放枪头盒"""
return warehouse_factory( return warehouse_factory(
name=name, name=name,
num_items_x=3, # 3列01-03 num_items_x=3, # 3列01-03
num_items_y=2, # 2行A-B num_items_y=2, # 2行A-B
num_items_z=1, # 1层 num_items_z=1, # 1层
dx=10.0, dx=10.0,
dy=10.0, dy=10.0,
dz=10.0, dz=10.0,
@@ -167,7 +167,7 @@ def bioyond_warehouse_1x4x2(name: str) -> WareHouse:
def bioyond_warehouse_1x2x2(name: str) -> WareHouse: def bioyond_warehouse_1x2x2(name: str) -> WareHouse:
"""创建BioYond 1x2x2仓库1列×2行×2层- 旧版本,已弃用 """创建BioYond 1x2x2仓库1列×2行×2层- 旧版本,已弃用
布局2层: 布局2层:
层1: A01 层1: A01
B01 B01
@@ -191,7 +191,7 @@ def bioyond_warehouse_1x2x2(name: str) -> WareHouse:
def bioyond_warehouse_2x2x1(name: str) -> WareHouse: def bioyond_warehouse_2x2x1(name: str) -> WareHouse:
"""创建BioYond 2x2x1仓库2行×2列×1层 """创建BioYond 2x2x1仓库2行×2列×1层
布局: 布局:
A01 | A02 A01 | A02
B01 | B02 B01 | B02
@@ -246,14 +246,14 @@ def bioyond_warehouse_1x3x3(name: str) -> WareHouse:
def bioyond_warehouse_5x3x1(name: str, row_offset: int = 0) -> WareHouse: def bioyond_warehouse_5x3x1(name: str, row_offset: int = 0) -> WareHouse:
"""创建BioYond 5x3x1仓库5行×3列×1层 """创建BioYond 5x3x1仓库5行×3列×1层
标准布局row_offset=0: 标准布局row_offset=0:
A01 | A02 | A03 A01 | A02 | A03
B01 | B02 | B03 B01 | B02 | B03
C01 | C02 | C03 C01 | C02 | C03
D01 | D02 | D03 D01 | D02 | D03
E01 | E02 | E03 E01 | E02 | E03
带偏移布局row_offset=5: 带偏移布局row_offset=5:
F01 | F02 | F03 F01 | F02 | F03
G01 | G02 | G03 G01 | G02 | G03
@@ -281,7 +281,7 @@ def bioyond_warehouse_5x3x1(name: str, row_offset: int = 0) -> WareHouse:
def bioyond_warehouse_3x3x1(name: str) -> WareHouse: def bioyond_warehouse_3x3x1(name: str) -> WareHouse:
"""创建BioYond 3x3x1仓库3行×3列×1层 """创建BioYond 3x3x1仓库3行×3列×1层
布局: 布局:
A01 | A02 | A03 A01 | A02 | A03
B01 | B02 | B03 B01 | B02 | B03

View File

@@ -193,20 +193,3 @@ def BIOYOND_PolymerStation_Flask(
barcode=barcode, barcode=barcode,
model="BIOYOND_PolymerStation_Flask", model="BIOYOND_PolymerStation_Flask",
) )
def BIOYOND_PolymerStation_Measurement_Vial(
name: str,
diameter: float = 25.0,
height: float = 60.0,
max_volume: float = 20000.0, # 20mL
barcode: str = None,
) -> Bottle:
"""创建测量小瓶"""
return Bottle(
name=name,
diameter=diameter,
height=height,
max_volume=max_volume,
barcode=barcode,
model="BIOYOND_PolymerStation_Measurement_Vial",
)

View File

@@ -18,12 +18,9 @@ from unilabos.resources.bioyond.YB_warehouses import (
bioyond_warehouse_1x8x4, bioyond_warehouse_1x8x4,
bioyond_warehouse_reagent_storage, bioyond_warehouse_reagent_storage,
# bioyond_warehouse_liquid_preparation, # bioyond_warehouse_liquid_preparation,
bioyond_warehouse_tipbox_storage, # 新增Tip盒堆栈
bioyond_warehouse_density_vial, bioyond_warehouse_density_vial,
) )
from unilabos.resources.bioyond.warehouses import (
bioyond_warehouse_tipbox_storage_left, # 新增Tip盒堆栈(左)
bioyond_warehouse_tipbox_storage_right, # 新增Tip盒堆栈(右)
)
class BIOYOND_PolymerReactionStation_Deck(Deck): class BIOYOND_PolymerReactionStation_Deck(Deck):
@@ -50,22 +47,24 @@ class BIOYOND_PolymerReactionStation_Deck(Deck):
"堆栈1右": bioyond_warehouse_1x4x4_right("堆栈1右"), # 右侧堆栈: A05D08 "堆栈1右": bioyond_warehouse_1x4x4_right("堆栈1右"), # 右侧堆栈: A05D08
"站内试剂存放堆栈": bioyond_warehouse_reagent_storage("站内试剂存放堆栈"), # A01A02 "站内试剂存放堆栈": bioyond_warehouse_reagent_storage("站内试剂存放堆栈"), # A01A02
# "移液站内10%分装液体准备仓库": bioyond_warehouse_liquid_preparation("移液站内10%分装液体准备仓库"), # A01B04 # "移液站内10%分装液体准备仓库": bioyond_warehouse_liquid_preparation("移液站内10%分装液体准备仓库"), # A01B04
"站内Tip盒堆栈(左)": bioyond_warehouse_tipbox_storage_left("站内Tip盒堆栈(左)"), # A02B03 "站内Tip盒堆栈": bioyond_warehouse_tipbox_storage("站内Tip盒堆栈"), # A01B03, 存放枪头盒.
"站内Tip盒堆栈(右)": bioyond_warehouse_tipbox_storage_right("站内Tip盒堆栈(右)"), # A01B01
"测量小瓶仓库(测密度)": bioyond_warehouse_density_vial("测量小瓶仓库(测密度)"), # A01B03 "测量小瓶仓库(测密度)": bioyond_warehouse_density_vial("测量小瓶仓库(测密度)"), # A01B03
} }
self.warehouse_locations = { self.warehouse_locations = {
"堆栈1左": Coordinate(-200.0, 400.0, 0.0), # 左侧位置 "堆栈1左": Coordinate(0.0, 430.0, 0.0), # 左侧位置
"堆栈1右": Coordinate(2350.0, 400.0, 0.0), # 右侧位置 "堆栈1右": Coordinate(2500.0, 430.0, 0.0), # 右侧位置
"站内试剂存放堆栈": Coordinate(640.0, 400.0, 0.0), "站内试剂存放堆栈": Coordinate(640.0, 480.0, 0.0),
"站内Tip盒堆栈(左)": Coordinate(300.0, 100.0, 0.0), # "移液站内10%分装液体准备仓库": Coordinate(1200.0, 600.0, 0.0),
"站内Tip盒堆栈(右)": Coordinate(2250.0, 100.0, 0.0), # 向右偏移 2 * item_dx (137.0) "站内Tip盒堆栈": Coordinate(300.0, 150.0, 0.0),
"测量小瓶仓库(测密度)": Coordinate(1000.0, 530.0, 0.0), "测量小瓶仓库(测密度)": Coordinate(922.0, 552.0, 0.0),
} }
self.warehouses["站内试剂存放堆栈"].rotation = Rotation(z=90)
self.warehouses["测量小瓶仓库(测密度)"].rotation = Rotation(z=270)
for warehouse_name, warehouse in self.warehouses.items(): for warehouse_name, warehouse in self.warehouses.items():
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name]) self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
class BIOYOND_PolymerPreparationStation_Deck(Deck): class BIOYOND_PolymerPreparationStation_Deck(Deck):
def __init__( def __init__(
self, self,
@@ -93,9 +92,9 @@ class BIOYOND_PolymerPreparationStation_Deck(Deck):
"溶液堆栈": bioyond_warehouse_1x4x4("溶液堆栈"), # 4行×4列 (A01-D04) "溶液堆栈": bioyond_warehouse_1x4x4("溶液堆栈"), # 4行×4列 (A01-D04)
} }
self.warehouse_locations = { self.warehouse_locations = {
"粉末堆栈": Coordinate(-200.0, 400.0, 0.0), "粉末堆栈": Coordinate(0.0, 450.0, 0.0),
"试剂堆栈": Coordinate(1750.0, 160.0, 0.0), "试剂堆栈": Coordinate(1850.0, 200.0, 0.0),
"溶液堆栈": Coordinate(2350.0, 400.0, 0.0), "溶液堆栈": Coordinate(2500.0, 450.0, 0.0),
} }
for warehouse_name, warehouse in self.warehouses.items(): for warehouse_name, warehouse in self.warehouses.items():
@@ -149,7 +148,6 @@ class BIOYOND_YB_Deck(Deck):
for warehouse_name, warehouse in self.warehouses.items(): for warehouse_name, warehouse in self.warehouses.items():
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name]) self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
def YB_Deck(name: str) -> Deck: def YB_Deck(name: str) -> Deck:
by=BIOYOND_YB_Deck(name=name) by=BIOYOND_YB_Deck(name=name)
by.setup() by.setup()

View File

@@ -46,80 +46,48 @@ def bioyond_warehouse_1x4x4_right(name: str) -> WareHouse:
) )
def bioyond_warehouse_density_vial(name: str) -> WareHouse: def bioyond_warehouse_density_vial(name: str) -> WareHouse:
"""创建测量小瓶仓库(测密度) - 竖向排列2列3行 """创建测量小瓶仓库(测密度) A01B03"""
布局(从下到上,从左到右):
| A03 | B03 | ← 顶部
| A02 | B02 | ← 中部
| A01 | B01 | ← 底部
"""
return warehouse_factory( return warehouse_factory(
name=name, name=name,
num_items_x=2, # 2列(A, B num_items_x=3, # 3列(01-03
num_items_y=3, # 3行(01-03从下到上 num_items_y=2, # 2行(A-B
num_items_z=1, # 1层 num_items_z=1, # 1层
dx=10.0, dx=10.0,
dy=10.0, dy=10.0,
dz=10.0, dz=10.0,
item_dx=40.0, # 列间距A到B的横向距离 item_dx=40.0,
item_dy=40.0, # 行间距01到02到03的竖向距离 item_dy=40.0,
item_dz=50.0, item_dz=50.0,
# ⭐ 竖向warehouse槽位尺寸也是竖向的小瓶已经是正方形无需调整 # 用更小的 resource_size 来表现 "小点的孔位"
resource_size_x=30.0, resource_size_x=30.0,
resource_size_y=30.0, resource_size_y=30.0,
resource_size_z=12.0, resource_size_z=12.0,
category="warehouse", category="warehouse",
col_offset=0, col_offset=0,
layout="vertical-col-major", # ⭐ 竖向warehouse专用布局
)
def bioyond_warehouse_reagent_storage(name: str) -> WareHouse:
"""创建BioYond站内试剂存放堆栈 - 竖向排列1列2行
布局(竖向,从下到上):
| A02 | ← 顶部
| A01 | ← 底部
"""
return warehouse_factory(
name=name,
num_items_x=1, # 1列
num_items_y=2, # 2行01-02从下到上
num_items_z=1, # 1层
dx=10.0,
dy=10.0,
dz=10.0,
item_dx=96.0, # 列间距这里只有1列不重要
item_dy=137.0, # 行间距A01到A02的竖向距离
item_dz=120.0,
# ⭐ 竖向warehouse交换槽位尺寸使槽位框也是竖向的
resource_size_x=86.0, # 原来的 resource_size_y
resource_size_y=127.0, # 原来的 resource_size_x
resource_size_z=25.0,
category="warehouse",
layout="vertical-col-major", # ⭐ 竖向warehouse专用布局
)
def bioyond_warehouse_tipbox_storage_left(name: str) -> WareHouse:
"""创建BioYond站内Tip盒堆栈左侧部分A02B032列2行"""
return warehouse_factory(
name=name,
num_items_x=2, # 2列
num_items_y=2, # 2行A-B
num_items_z=1, # 1层
dx=10.0,
dy=10.0,
dz=10.0,
item_dx=137.0,
item_dy=96.0,
item_dz=120.0,
category="warehouse",
col_offset=1, # 从02开始: A02, A03
layout="row-major", layout="row-major",
) )
def bioyond_warehouse_tipbox_storage_right(name: str) -> WareHouse: def bioyond_warehouse_reagent_storage(name: str) -> WareHouse:
"""创建BioYond站内Tip盒堆栈右侧部分A01B011列2行""" """创建BioYond站内试剂存放堆栈A01A02, 1行×2列"""
return warehouse_factory( return warehouse_factory(
name=name, name=name,
num_items_x=1, # 1列 num_items_x=2, # 2列01-02
num_items_y=1, # 1行A
num_items_z=1, # 1层
dx=10.0,
dy=10.0,
dz=10.0,
item_dx=137.0,
item_dy=96.0,
item_dz=120.0,
category="warehouse",
)
def bioyond_warehouse_tipbox_storage(name: str) -> WareHouse:
"""创建BioYond站内Tip盒堆栈A01B03用于存放枪头盒"""
return warehouse_factory(
name=name,
num_items_x=3, # 3列01-03
num_items_y=2, # 2行A-B num_items_y=2, # 2行A-B
num_items_z=1, # 1层 num_items_z=1, # 1层
dx=10.0, dx=10.0,
@@ -129,7 +97,7 @@ def bioyond_warehouse_tipbox_storage_right(name: str) -> WareHouse:
item_dy=96.0, item_dy=96.0,
item_dz=120.0, item_dz=120.0,
category="warehouse", category="warehouse",
col_offset=0, # 从01开始: A01 col_offset=0,
layout="row-major", layout="row-major",
) )

View File

@@ -27,7 +27,7 @@ class RegularContainer(Container):
def get_regular_container(name="container"): def get_regular_container(name="container"):
r = RegularContainer(name=name) r = RegularContainer(name=name)
r.category = "container" r.category = "container"
return r return RegularContainer(name=name)
# #
# class RegularContainer(object): # class RegularContainer(object):

View File

@@ -779,22 +779,6 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
if not locations: if not locations:
logger.debug(f"[物料位置] {unique_name} 没有location信息跳过warehouse放置") logger.debug(f"[物料位置] {unique_name} 没有location信息跳过warehouse放置")
# ⭐ 预先检查如果物料的任何location在竖向warehouse中提前交换尺寸
# 这样可以避免多个location时尺寸不一致的问题
needs_size_swap = False
for loc in locations:
wh_name_check = loc.get("whName")
if wh_name_check in ["站内试剂存放堆栈", "测量小瓶仓库(测密度)"]:
needs_size_swap = True
break
if needs_size_swap and hasattr(plr_material, 'size_x') and hasattr(plr_material, 'size_y'):
original_x = plr_material.size_x
original_y = plr_material.size_y
plr_material.size_x = original_y
plr_material.size_y = original_x
logger.debug(f" 物料 {unique_name} 将放入竖向warehouse预先交换尺寸: {original_x}×{original_y}{plr_material.size_x}×{plr_material.size_y}")
for loc in locations: for loc in locations:
wh_name = loc.get("whName") wh_name = loc.get("whName")
logger.debug(f"[物料位置] {unique_name} 尝试放置到 warehouse: {wh_name} (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')}, z={loc.get('z')})") logger.debug(f"[物料位置] {unique_name} 尝试放置到 warehouse: {wh_name} (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')}, z={loc.get('z')})")
@@ -811,20 +795,12 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
logger.warning(f"物料 {material['name']} 的列号 x={x_val} 超出范围无法映射到堆栈1左或堆栈1右") logger.warning(f"物料 {material['name']} 的列号 x={x_val} 超出范围无法映射到堆栈1左或堆栈1右")
continue continue
# 特殊处理: Bioyond的"站内Tip盒堆栈"也需要进行拆分映射
if wh_name == "站内Tip盒堆栈":
y_val = loc.get("y", 1)
if y_val == 1:
wh_name = "站内Tip盒堆栈(右)"
elif y_val in [2, 3]:
wh_name = "站内Tip盒堆栈(左)"
y = y - 1 # 调整列号,因为左侧仓库对应的 Bioyond y=2 实际上是它的第1列
if hasattr(deck, "warehouses") and wh_name in deck.warehouses: if hasattr(deck, "warehouses") and wh_name in deck.warehouses:
warehouse = deck.warehouses[wh_name] warehouse = deck.warehouses[wh_name]
logger.debug(f"[Warehouse匹配] 找到warehouse: {wh_name} (容量: {warehouse.capacity}, 行×列: {warehouse.num_items_x}×{warehouse.num_items_y})") logger.debug(f"[Warehouse匹配] 找到warehouse: {wh_name} (容量: {warehouse.capacity}, 行×列: {warehouse.num_items_x}×{warehouse.num_items_y})")
# Bioyond坐标映射 (重要!): x→行(1=A,2=B...), y→列(1=01,2=02...), z→层(通常=1) # Bioyond坐标映射 (重要!): x→行(1=A,2=B...), y→列(1=01,2=02...), z→层(通常=1)
# PyLabRobot warehouse是列优先存储: A01,B01,C01,D01, A02,B02,C02,D02, ...
x = loc.get("x", 1) # 行号 (1-based: 1=A, 2=B, 3=C, 4=D) x = loc.get("x", 1) # 行号 (1-based: 1=A, 2=B, 3=C, 4=D)
y = loc.get("y", 1) # 列号 (1-based: 1=01, 2=02, 3=03...) y = loc.get("y", 1) # 列号 (1-based: 1=01, 2=02, 3=03...)
z = loc.get("z", 1) # 层号 (1-based, 通常为1) z = loc.get("z", 1) # 层号 (1-based, 通常为1)
@@ -833,23 +809,12 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
if wh_name == "堆栈1右": if wh_name == "堆栈1右":
y = y - 4 # 将5-8映射到1-4 y = y - 4 # 将5-8映射到1-4
# 特殊处理向warehouse站内试剂存放堆栈、测量小瓶仓库 # 特殊处理对于1行×N列的横向warehouse站内试剂存放堆栈)
# 这些warehouse使用 vertical-col-major 布局 # Bioyond的y坐标表示线性位置序号而不是列号
if wh_name in ["站内试剂存放堆栈", "测量小瓶仓库(测密度)"]: if warehouse.num_items_y == 1:
# vertical-col-major 布局的坐标映射: # 1行warehouse: 直接用y作为线性索引
# - Bioyond的x(1=A,2=B)对应warehouse的列(col, x方向) idx = y - 1
# - Bioyond的y(1=01,2=02,3=03)对应warehouse的行(row, y方向),从下到上 logger.debug(f"1行warehouse {wh_name}: y={y} → idx={idx}")
# vertical-col-major 中: row=0 对应底部row=n-1 对应顶部
# Bioyond y=1(01) 对应底部 → row=0, y=2(02) 对应中间 → row=1
# 索引计算: idx = row * num_cols + col
col_idx = x - 1 # Bioyond的x(A,B) → col索引(0,1)
row_idx = y - 1 # Bioyond的y(01,02,03) → row索引(0,1,2)
layer_idx = z - 1
idx = layer_idx * (warehouse.num_items_x * warehouse.num_items_y) + row_idx * warehouse.num_items_y + col_idx
logger.debug(f"🔍 竖向warehouse {wh_name}: Bioyond(x={x},y={y},z={z}) → warehouse(col={col_idx},row={row_idx},layer={layer_idx}) → idx={idx}, capacity={warehouse.capacity}")
# 普通横向warehouse的处理
else: else:
# 多行warehouse: 根据 layout 使用不同的索引计算 # 多行warehouse: 根据 layout 使用不同的索引计算
row_idx = x - 1 # x表示行: 转为0-based row_idx = x - 1 # x表示行: 转为0-based
@@ -873,7 +838,6 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
if 0 <= idx < warehouse.capacity: if 0 <= idx < warehouse.capacity:
if warehouse[idx] is None or isinstance(warehouse[idx], ResourceHolder): if warehouse[idx] is None or isinstance(warehouse[idx], ResourceHolder):
# 物料尺寸已在放入warehouse前根据需要进行了交换
warehouse[idx] = plr_material warehouse[idx] = plr_material
logger.debug(f"✅ 物料 {unique_name} 放置到 {wh_name}[{idx}] (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')})") logger.debug(f"✅ 物料 {unique_name} 放置到 {wh_name}[{idx}] (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')})")
else: else:
@@ -1047,24 +1011,11 @@ def resource_plr_to_bioyond(plr_resources: list[ResourcePLR], type_mapping: dict
logger.debug(f" 📭 [单瓶物料] {resource.name} 无液体,使用资源名: {material_name}") logger.debug(f" 📭 [单瓶物料] {resource.name} 无液体,使用资源名: {material_name}")
# 🎯 处理物料默认参数和单位 # 🎯 处理物料默认参数和单位
# 优先级: typeId参数 > 物料名称参数 > 默认值 # 检查是否有该物料名称的默认参数配置
default_unit = "" # 默认单位 default_unit = "" # 默认单位
material_parameters = {} material_parameters = {}
# 1⃣ 首先检查是否有 typeId 对应的参数配置(从 material_params 中获取key 格式为 "type:<typeId>" if material_name in material_params:
type_params_key = f"type:{type_id}"
if type_params_key in material_params:
params_config = material_params[type_params_key].copy()
# 提取 unit 字段(如果有)
if "unit" in params_config:
default_unit = params_config.pop("unit") # 从参数中移除,放到外层
# 剩余的字段放入 Parameters
material_parameters = params_config
logger.debug(f" 🔧 [物料参数-按typeId] 为 typeId={type_id[:8]}... 应用配置: unit={default_unit}, parameters={material_parameters}")
# 2⃣ 其次检查是否有该物料名称的默认参数配置
elif material_name in material_params:
params_config = material_params[material_name].copy() params_config = material_params[material_name].copy()
# 提取 unit 字段(如果有) # 提取 unit 字段(如果有)
@@ -1073,7 +1024,7 @@ def resource_plr_to_bioyond(plr_resources: list[ResourcePLR], type_mapping: dict
# 剩余的字段放入 Parameters # 剩余的字段放入 Parameters
material_parameters = params_config material_parameters = params_config
logger.debug(f" 🔧 [物料参数-按名称] 为 {material_name} 应用配置: unit={default_unit}, parameters={material_parameters}") logger.debug(f" 🔧 [物料参数] 为 {material_name} 应用配置: unit={default_unit}, parameters={material_parameters}")
# 转换为 JSON 字符串 # 转换为 JSON 字符串
parameters_json = json.dumps(material_parameters) if material_parameters else "{}" parameters_json = json.dumps(material_parameters) if material_parameters else "{}"
@@ -1200,7 +1151,11 @@ def initialize_resource(resource_config: dict, resource_type: Any = None) -> Uni
if resource_class_config["type"] == "pylabrobot": if resource_class_config["type"] == "pylabrobot":
resource_plr = RESOURCE(name=resource_config["name"]) resource_plr = RESOURCE(name=resource_config["name"])
if resource_type != ResourcePLR: if resource_type != ResourcePLR:
tree_sets = ResourceTreeSet.from_plr_resources([resource_plr], known_newly_created=True) tree_sets = ResourceTreeSet.from_plr_resources([resource_plr])
# r = resource_plr_to_ulab(resource_plr=resource_plr, parent_name=resource_config.get("parent", None))
# # r = resource_plr_to_ulab(resource_plr=resource_plr)
# if resource_config.get("position") is not None:
# r["position"] = resource_config["position"]
r = tree_sets.dump() r = tree_sets.dump()
else: else:
r = resource_plr r = resource_plr

View File

@@ -50,45 +50,12 @@ class Bottle(Well):
self.barcode = barcode self.barcode = barcode
def serialize(self) -> dict: def serialize(self) -> dict:
# Pylabrobot expects barcode to be an object with serialize(), but here it is a str.
# We temporarily unset it to avoid AttributeError in super().serialize().
_barcode = self.barcode
self.barcode = None
try:
data = super().serialize()
finally:
self.barcode = _barcode
return { return {
**data, **super().serialize(),
"diameter": self.diameter, "diameter": self.diameter,
"height": self.height, "height": self.height,
} }
@classmethod
def deserialize(cls, data: dict, allow_marshal: bool = False):
# Extract barcode before calling parent deserialize to avoid type error
barcode_data = data.pop("barcode", None)
# Call parent deserialize
instance = super(Bottle, cls).deserialize(data, allow_marshal=allow_marshal)
# Set barcode as string (not as Barcode object)
if barcode_data:
if isinstance(barcode_data, str):
instance.barcode = barcode_data
elif isinstance(barcode_data, dict):
# If it's a dict (Barcode serialized format), extract the data field
instance.barcode = barcode_data.get("data", "")
else:
instance.barcode = ""
# Set additional attributes
instance.diameter = data.get("diameter", instance._size_x)
instance.height = data.get("height", instance._size_z)
return instance
T = TypeVar("T", bound=ResourceHolder) T = TypeVar("T", bound=ResourceHolder)
S = TypeVar("S", bound=ResourceHolder) S = TypeVar("S", bound=ResourceHolder)

View File

@@ -1,7 +1,7 @@
import inspect import inspect
import traceback import traceback
import uuid import uuid
from pydantic import BaseModel, field_serializer, field_validator, ValidationError from pydantic import BaseModel, field_serializer, field_validator
from pydantic import Field from pydantic import Field
from typing import List, Tuple, Any, Dict, Literal, Optional, cast, TYPE_CHECKING, Union from typing import List, Tuple, Any, Dict, Literal, Optional, cast, TYPE_CHECKING, Union
@@ -147,24 +147,20 @@ class ResourceDictInstance(object):
if not content.get("extra"): # MagicCode if not content.get("extra"): # MagicCode
content["extra"] = {} content["extra"] = {}
if "position" in content: if "position" in content:
pose = content.get("pose", {}) pose = content.get("pose",{})
if "position" not in pose: if "position" not in pose :
if "position" in content["position"]: if "position" in content["position"]:
pose["position"] = content["position"]["position"] pose["position"] = content["position"]["position"]
else: else:
pose["position"] = {"x": 0, "y": 0, "z": 0} pose["position"] = {"x": 0, "y": 0, "z": 0}
if "size" not in pose: if "size" not in pose:
pose["size"] = { pose["size"] = {
"width": content["config"].get("size_x", 0), "width": content["config"].get("size_x", 0),
"height": content["config"].get("size_y", 0), "height": content["config"].get("size_y", 0),
"depth": content["config"].get("size_z", 0), "depth": content["config"].get("size_z", 0)
} }
content["pose"] = pose content["pose"] = pose
try: return ResourceDictInstance(ResourceDict.model_validate(content))
res_dict = ResourceDict.model_validate(content)
return ResourceDictInstance(res_dict)
except ValidationError as err:
raise err
def get_plr_nested_dict(self) -> Dict[str, Any]: def get_plr_nested_dict(self) -> Dict[str, Any]:
"""获取资源实例的嵌套字典表示""" """获取资源实例的嵌套字典表示"""
@@ -326,7 +322,7 @@ class ResourceTreeSet(object):
) )
@classmethod @classmethod
def from_plr_resources(cls, resources: List["PLRResource"], known_newly_created=False) -> "ResourceTreeSet": def from_plr_resources(cls, resources: List["PLRResource"]) -> "ResourceTreeSet":
""" """
从plr资源创建ResourceTreeSet 从plr资源创建ResourceTreeSet
""" """
@@ -343,8 +339,6 @@ class ResourceTreeSet(object):
} }
if source in replace_info: if source in replace_info:
return replace_info[source] return replace_info[source]
elif source is None:
return ""
else: else:
print("转换pylabrobot的时候出现未知类型", source) print("转换pylabrobot的时候出现未知类型", source)
return source return source
@@ -355,8 +349,7 @@ class ResourceTreeSet(object):
if not uid: if not uid:
uid = str(uuid.uuid4()) uid = str(uuid.uuid4())
res.unilabos_uuid = uid res.unilabos_uuid = uid
if not known_newly_created: logger.warning(f"{res}没有uuid请设置后再传入默认填充{uid}\n{traceback.format_exc()}")
logger.warning(f"{res}没有uuid请设置后再传入默认填充{uid}\n{traceback.format_exc()}")
# 获取unilabos_extra默认为空字典 # 获取unilabos_extra默认为空字典
extra = getattr(res, "unilabos_extra", {}) extra = getattr(res, "unilabos_extra", {})
@@ -455,13 +448,7 @@ class ResourceTreeSet(object):
from pylabrobot.utils.object_parsing import find_subclass from pylabrobot.utils.object_parsing import find_subclass
# 类型映射 # 类型映射
TYPE_MAP = { TYPE_MAP = {"plate": "Plate", "well": "Well", "deck": "Deck", "container": "RegularContainer", "tip_spot": "TipSpot"}
"plate": "Plate",
"well": "Well",
"deck": "Deck",
"container": "RegularContainer",
"tip_spot": "TipSpot",
}
def collect_node_data(node: ResourceDictInstance, name_to_uuid: dict, all_states: dict, name_to_extra: dict): def collect_node_data(node: ResourceDictInstance, name_to_uuid: dict, all_states: dict, name_to_extra: dict):
"""一次遍历收集 name_to_uuid, all_states 和 name_to_extra""" """一次遍历收集 name_to_uuid, all_states 和 name_to_extra"""
@@ -621,16 +608,6 @@ class ResourceTreeSet(object):
""" """
return [tree.root_node for tree in self.trees] return [tree.root_node for tree in self.trees]
@property
def root_nodes_uuid(self) -> List[ResourceDictInstance]:
"""
获取所有树的根节点
Returns:
所有根节点的资源实例列表
"""
return [tree.root_node.res_content.uuid for tree in self.trees]
@property @property
def all_nodes(self) -> List[ResourceDictInstance]: def all_nodes(self) -> List[ResourceDictInstance]:
""" """
@@ -941,33 +918,6 @@ class DeviceNodeResourceTracker(object):
return self._traverse_and_process(resource, process) return self._traverse_and_process(resource, process)
def loop_find_with_uuid(self, resource, target_uuid: str):
"""
递归遍历资源树,根据 uuid 查找并返回对应的资源
Args:
resource: 资源对象可以是list、dict或实例
target_uuid: 要查找的uuid
Returns:
找到的资源对象未找到则返回None
"""
found_resource = None
def process(res):
nonlocal found_resource
if found_resource is not None:
return 0 # 已找到,跳过后续处理
current_uuid = self._get_resource_attr(res, "uuid", "unilabos_uuid")
if current_uuid and current_uuid == target_uuid:
found_resource = res
logger.trace(f"找到资源UUID: {target_uuid}")
return 1
return 0
self._traverse_and_process(resource, process)
return found_resource
def loop_set_extra(self, resource, name_to_extra_map: Dict[str, dict]) -> int: def loop_set_extra(self, resource, name_to_extra_map: Dict[str, dict]) -> int:
""" """
递归遍历资源树,根据 name 设置所有节点的 extra 递归遍历资源树,根据 name 设置所有节点的 extra
@@ -1153,7 +1103,7 @@ class DeviceNodeResourceTracker(object):
for key in keys_to_remove: for key in keys_to_remove:
self.resource2parent_resource.pop(key, None) self.resource2parent_resource.pop(key, None)
logger.trace(f"[ResourceTracker] 成功移除资源: {resource}") logger.debug(f"成功移除资源: {resource}")
return True return True
def clear_resource(self): def clear_resource(self):

View File

@@ -43,10 +43,6 @@ def warehouse_factory(
if layout == "row-major": if layout == "row-major":
# 行优先row=0(A行) 应该显示在上方,需要较小的 y 值 # 行优先row=0(A行) 应该显示在上方,需要较小的 y 值
y = dy + row * item_dy y = dy + row * item_dy
elif layout == "vertical-col-major":
# 竖向warehouse: row=0 对应顶部y小row=n-1 对应底部y大
# 但标签 01 应该在底部,所以使用反向映射
y = dy + (num_items_y - row - 1) * item_dy
else: else:
# 列优先保持原逻辑row=0 对应较大的 y # 列优先保持原逻辑row=0 对应较大的 y
y = dy + (num_items_y - row - 1) * item_dy y = dy + (num_items_y - row - 1) * item_dy

View File

@@ -159,14 +159,10 @@ _msg_converter: Dict[Type, Any] = {
else Pose() else Pose()
), ),
config=json.dumps(x.get("config", {})), config=json.dumps(x.get("config", {})),
data=json.dumps(obtain_data_with_uuid(x)), data=json.dumps(x.get("data", {})),
), ),
} }
def obtain_data_with_uuid(x: dict):
data = x.get("data", {})
data["unilabos_uuid"] = x.get("uuid", None)
return data
def json_or_yaml_loads(data: str) -> Any: def json_or_yaml_loads(data: str) -> Any:
try: try:
@@ -770,16 +766,13 @@ def ros_message_to_json_schema(msg_class: Any, field_name: str) -> Dict[str, Any
return schema return schema
def ros_action_to_json_schema( def ros_action_to_json_schema(action_class: Any, description="") -> Dict[str, Any]:
action_class: Any, description="", previous_schema: Optional[Dict[str, Any]] = None
) -> Dict[str, Any]:
""" """
将 ROS Action 类转换为 JSON Schema 将 ROS Action 类转换为 JSON Schema
Args: Args:
action_class: ROS Action 类 action_class: ROS Action 类
description: 描述 description: 描述
previous_schema: 之前的 schema用于保留 goal/feedback/result 下一级字段的 description
Returns: Returns:
完整的 JSON Schema 定义 完整的 JSON Schema 定义
@@ -813,44 +806,9 @@ def ros_action_to_json_schema(
"required": ["goal"], "required": ["goal"],
} }
# 保留之前 schema 中 goal/feedback/result 下一级字段的 description
if previous_schema:
_preserve_field_descriptions(schema, previous_schema)
return schema return schema
def _preserve_field_descriptions(
new_schema: Dict[str, Any], previous_schema: Dict[str, Any]
) -> None:
"""
保留之前 schema 中 goal/feedback/result 下一级字段的 description 和 title
Args:
new_schema: 新生成的 schema会被修改
previous_schema: 之前的 schema
"""
for section in ["goal", "feedback", "result"]:
new_section = new_schema.get("properties", {}).get(section, {})
prev_section = previous_schema.get("properties", {}).get(section, {})
if not new_section or not prev_section:
continue
new_props = new_section.get("properties", {})
prev_props = prev_section.get("properties", {})
for field_name, field_schema in new_props.items():
if field_name in prev_props:
prev_field = prev_props[field_name]
# 保留字段的 description
if "description" in prev_field and prev_field["description"]:
field_schema["description"] = prev_field["description"]
# 保留字段的 title用户自定义的中文名
if "title" in prev_field and prev_field["title"]:
field_schema["title"] = prev_field["title"]
def convert_ros_action_to_jsonschema( def convert_ros_action_to_jsonschema(
action_name_or_type: Union[str, Type], output_file: Optional[str] = None, format: str = "json" action_name_or_type: Union[str, Type], output_file: Optional[str] = None, format: str = "json"
) -> Dict[str, Any]: ) -> Dict[str, Any]:

View File

@@ -392,12 +392,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
parent_resource = self.resource_tracker.figure_resource( parent_resource = self.resource_tracker.figure_resource(
{"name": bind_parent_id} {"name": bind_parent_id}
) )
for r in rts.root_nodes: for r in rts.root_nodes:
# noinspection PyUnresolvedReferences # noinspection PyUnresolvedReferences
r.res_content.parent_uuid = parent_resource.unilabos_uuid r.res_content.parent_uuid = parent_resource.unilabos_uuid
else:
for r in rts.root_nodes:
r.res_content.parent_uuid = self.uuid
if len(LIQUID_INPUT_SLOT) and LIQUID_INPUT_SLOT[0] == -1 and len(rts.root_nodes) == 1 and isinstance(rts.root_nodes[0], RegularContainer): if len(LIQUID_INPUT_SLOT) and LIQUID_INPUT_SLOT[0] == -1 and len(rts.root_nodes) == 1 and isinstance(rts.root_nodes[0], RegularContainer):
# noinspection PyTypeChecker # noinspection PyTypeChecker
@@ -433,14 +430,11 @@ class BaseROS2DeviceNode(Node, Generic[T]):
}) })
tree_response: SerialCommand.Response = await client.call_async(request) tree_response: SerialCommand.Response = await client.call_async(request)
uuid_maps = json.loads(tree_response.response) uuid_maps = json.loads(tree_response.response)
plr_instances = rts.to_plr_resources() self.resource_tracker.loop_update_uuid(input_resources, uuid_maps)
for plr_instance in plr_instances:
self.resource_tracker.loop_update_uuid(plr_instance, uuid_maps)
rts: ResourceTreeSet = ResourceTreeSet.from_plr_resources(plr_instances)
self.lab_logger().info(f"Resource tree added. UUID mapping: {len(uuid_maps)} nodes") self.lab_logger().info(f"Resource tree added. UUID mapping: {len(uuid_maps)} nodes")
final_response = { final_response = {
"created_resource_tree": rts.dump(), "created_resources": rts.dump(),
"liquid_input_resource_tree": [], "liquid_input_resources": [],
} }
res.response = json.dumps(final_response) res.response = json.dumps(final_response)
# 如果driver自己就有assign的方法那就使用driver自己的assign方法 # 如果driver自己就有assign的方法那就使用driver自己的assign方法
@@ -466,7 +460,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
return res return res
try: try:
if len(rts.root_nodes) == 1 and parent_resource is not None: if len(rts.root_nodes) == 1 and parent_resource is not None:
plr_instance = plr_instances[0] plr_instance = rts.to_plr_resources()[0]
if isinstance(plr_instance, Plate): if isinstance(plr_instance, Plate):
empty_liquid_info_in: List[Tuple[Optional[str], float]] = [(None, 0)] * plr_instance.num_items empty_liquid_info_in: List[Tuple[Optional[str], float]] = [(None, 0)] * plr_instance.num_items
if len(ADD_LIQUID_TYPE) == 1 and len(LIQUID_VOLUME) == 1 and len(LIQUID_INPUT_SLOT) > 1: if len(ADD_LIQUID_TYPE) == 1 and len(LIQUID_VOLUME) == 1 and len(LIQUID_INPUT_SLOT) > 1:
@@ -491,7 +485,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
input_wells = [] input_wells = []
for r in LIQUID_INPUT_SLOT: for r in LIQUID_INPUT_SLOT:
input_wells.append(plr_instance.children[r]) input_wells.append(plr_instance.children[r])
final_response["liquid_input_resource_tree"] = ResourceTreeSet.from_plr_resources(input_wells).dump() final_response["liquid_input_resources"] = ResourceTreeSet.from_plr_resources(input_wells).dump()
res.response = json.dumps(final_response) res.response = json.dumps(final_response)
if issubclass(parent_resource.__class__, Deck) and hasattr(parent_resource, "assign_child_at_slot") and "slot" in other_calling_param: if issubclass(parent_resource.__class__, Deck) and hasattr(parent_resource, "assign_child_at_slot") and "slot" in other_calling_param:
other_calling_param["slot"] = int(other_calling_param["slot"]) other_calling_param["slot"] = int(other_calling_param["slot"])
@@ -625,7 +619,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
) # type: ignore ) # type: ignore
raw_nodes = json.loads(response.response) raw_nodes = json.loads(response.response)
tree_set = ResourceTreeSet.from_raw_dict_list(raw_nodes) tree_set = ResourceTreeSet.from_raw_dict_list(raw_nodes)
self.lab_logger().trace(f"获取资源结果: {len(tree_set.trees)} 个资源树 {tree_set.root_nodes}") self.lab_logger().debug(f"获取资源结果: {len(tree_set.trees)} 个资源树")
return tree_set return tree_set
async def get_resource_with_dir(self, resource_id: str, with_children: bool = True) -> "ResourcePLR": async def get_resource_with_dir(self, resource_id: str, with_children: bool = True) -> "ResourcePLR":
@@ -659,71 +653,61 @@ class BaseROS2DeviceNode(Node, Generic[T]):
def transfer_to_new_resource( def transfer_to_new_resource(
self, plr_resource: "ResourcePLR", tree: ResourceTreeInstance, additional_add_params: Dict[str, Any] self, plr_resource: "ResourcePLR", tree: ResourceTreeInstance, additional_add_params: Dict[str, Any]
) -> Optional["ResourcePLR"]: ):
parent_uuid = tree.root_node.res_content.parent_uuid parent_uuid = tree.root_node.res_content.parent_uuid
if not parent_uuid: if parent_uuid:
self.lab_logger().warning( parent_resource: ResourcePLR = self.resource_tracker.uuid_to_resources.get(parent_uuid)
f"物料{plr_resource} parent未知挂载到当前节点下额外参数{additional_add_params}" if parent_resource is None:
)
return None
if parent_uuid == self.uuid:
self.lab_logger().warning(
f"物料{plr_resource}请求挂载到{self.identifier},额外参数:{additional_add_params}"
)
return None
parent_resource: ResourcePLR = self.resource_tracker.uuid_to_resources.get(parent_uuid)
if parent_resource is None:
self.lab_logger().warning(
f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_uuid}不存在"
)
else:
try:
# 特殊兼容所有plr的物料的assign方法和create_resource append_resource后期同步
additional_params = {}
extra = getattr(plr_resource, "unilabos_extra", {})
if len(extra):
self.lab_logger().info(f"发现物料{plr_resource}额外参数: " + str(extra))
if "update_resource_site" in extra:
additional_add_params["site"] = extra["update_resource_site"]
site = additional_add_params.get("site", None)
spec = inspect.signature(parent_resource.assign_child_resource)
if "spot" in spec.parameters:
ordering_dict: Dict[str, Any] = getattr(parent_resource, "_ordering")
if ordering_dict:
site = list(ordering_dict.keys()).index(site)
additional_params["spot"] = site
old_parent = plr_resource.parent
if old_parent is not None:
# plr并不支持同一个deck的加载和卸载
self.lab_logger().warning(f"物料{plr_resource}请求从{old_parent}卸载")
old_parent.unassign_child_resource(plr_resource)
self.lab_logger().warning( self.lab_logger().warning(
f"物料{plr_resource}请求挂载{parent_resource},额外参数:{additional_params}" f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_uuid}不存在"
) )
else:
try:
# 特殊兼容所有plr的物料的assign方法和create_resource append_resource后期同步
additional_params = {}
extra = getattr(plr_resource, "unilabos_extra", {})
if len(extra):
self.lab_logger().info(f"发现物料{plr_resource}额外参数: " + str(extra))
if "update_resource_site" in extra:
additional_add_params["site"] = extra["update_resource_site"]
site = additional_add_params.get("site", None)
spec = inspect.signature(parent_resource.assign_child_resource)
if "spot" in spec.parameters:
ordering_dict: Dict[str, Any] = getattr(parent_resource, "_ordering")
if ordering_dict:
site = list(ordering_dict.keys()).index(site)
additional_params["spot"] = site
old_parent = plr_resource.parent
if old_parent is not None:
# plr并不支持同一个deck的加载和卸载
self.lab_logger().warning(f"物料{plr_resource}请求从{old_parent}卸载")
old_parent.unassign_child_resource(plr_resource)
self.lab_logger().warning(
f"物料{plr_resource}请求挂载到{parent_resource},额外参数:{additional_params}"
)
# ⭐ assign 之前,需要从 resources 列表中移除 # ⭐ assign 之前,需要从 resources 列表中移除
# 因为资源将不再是顶级资源,而是成为 parent_resource 的子资源 # 因为资源将不再是顶级资源,而是成为 parent_resource 的子资源
# 如果不移除figure_resource 会找到两次:一次在 resources一次在 parent 的 children # 如果不移除figure_resource 会找到两次:一次在 resources一次在 parent 的 children
resource_id = id(plr_resource) resource_id = id(plr_resource)
for i, r in enumerate(self.resource_tracker.resources): for i, r in enumerate(self.resource_tracker.resources):
if id(r) == resource_id: if id(r) == resource_id:
self.resource_tracker.resources.pop(i) self.resource_tracker.resources.pop(i)
self.lab_logger().debug( self.lab_logger().debug(
f"从顶级资源列表中移除 {plr_resource.name}(即将成为 {parent_resource.name} 的子资源)" f"从顶级资源列表中移除 {plr_resource.name}(即将成为 {parent_resource.name} 的子资源)"
) )
break break
parent_resource.assign_child_resource(plr_resource, location=None, **additional_params) parent_resource.assign_child_resource(plr_resource, location=None, **additional_params)
func = getattr(self.driver_instance, "resource_tree_transfer", None) func = getattr(self.driver_instance, "resource_tree_transfer", None)
if callable(func): if callable(func):
# 分别是 物料的原来父节点当前物料的状态物料的新父节点此时物料已经重新assign了 # 分别是 物料的原来父节点当前物料的状态物料的新父节点此时物料已经重新assign了
func(old_parent, plr_resource, parent_resource) func(old_parent, plr_resource, parent_resource)
return parent_resource except Exception as e:
except Exception as e: self.lab_logger().warning(
self.lab_logger().warning( f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_resource}[{parent_uuid}]失败!\n{traceback.format_exc()}"
f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_resource}[{parent_uuid}]失败!\n{traceback.format_exc()}" )
)
async def s2c_resource_tree(self, req: SerialCommand_Request, res: SerialCommand_Response): async def s2c_resource_tree(self, req: SerialCommand_Request, res: SerialCommand_Response):
""" """
@@ -738,7 +722,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
def _handle_add( def _handle_add(
plr_resources: List[ResourcePLR], tree_set: ResourceTreeSet, additional_add_params: Dict[str, Any] plr_resources: List[ResourcePLR], tree_set: ResourceTreeSet, additional_add_params: Dict[str, Any]
) -> Tuple[Dict[str, Any], List[ResourcePLR]]: ) -> Dict[str, Any]:
""" """
处理资源添加操作的内部函数 处理资源添加操作的内部函数
@@ -750,20 +734,15 @@ class BaseROS2DeviceNode(Node, Generic[T]):
Returns: Returns:
操作结果字典 操作结果字典
""" """
parents = [] # 放的是被变更的物料 / 被变更的物料父级
for plr_resource, tree in zip(plr_resources, tree_set.trees): for plr_resource, tree in zip(plr_resources, tree_set.trees):
self.resource_tracker.add_resource(plr_resource) self.resource_tracker.add_resource(plr_resource)
parent = self.transfer_to_new_resource(plr_resource, tree, additional_add_params) self.transfer_to_new_resource(plr_resource, tree, additional_add_params)
if parent is not None:
parents.append(parent)
else:
parents.append(plr_resource)
func = getattr(self.driver_instance, "resource_tree_add", None) func = getattr(self.driver_instance, "resource_tree_add", None)
if callable(func): if callable(func):
func(plr_resources) func(plr_resources)
return {"success": True, "action": "add"}, parents return {"success": True, "action": "add"}
def _handle_remove(resources_uuid: List[str]) -> Dict[str, Any]: def _handle_remove(resources_uuid: List[str]) -> Dict[str, Any]:
""" """
@@ -798,11 +777,11 @@ class BaseROS2DeviceNode(Node, Generic[T]):
if plr_resource.parent is not None: if plr_resource.parent is not None:
plr_resource.parent.unassign_child_resource(plr_resource) plr_resource.parent.unassign_child_resource(plr_resource)
self.resource_tracker.remove_resource(plr_resource) self.resource_tracker.remove_resource(plr_resource)
self.lab_logger().info(f"[资源同步] 移除物料 {plr_resource} 及其子节点") self.lab_logger().info(f"移除物料 {plr_resource} 及其子节点")
for other_plr_resource in other_plr_resources: for other_plr_resource in other_plr_resources:
self.resource_tracker.remove_resource(other_plr_resource) self.resource_tracker.remove_resource(other_plr_resource)
self.lab_logger().info(f"[资源同步] 移除物料 {other_plr_resource} 及其子节点") self.lab_logger().info(f"移除物料 {other_plr_resource} 及其子节点")
return { return {
"success": True, "success": True,
@@ -834,16 +813,11 @@ class BaseROS2DeviceNode(Node, Generic[T]):
original_instance: ResourcePLR = self.resource_tracker.figure_resource( original_instance: ResourcePLR = self.resource_tracker.figure_resource(
{"uuid": tree.root_node.res_content.uuid}, try_mode=False {"uuid": tree.root_node.res_content.uuid}, try_mode=False
) )
original_parent_resource = original_instance.parent
original_parent_resource_uuid = getattr(original_parent_resource, "unilabos_uuid", None)
target_parent_resource_uuid = tree.root_node.res_content.uuid_parent
not_same_parent = original_parent_resource_uuid != target_parent_resource_uuid and original_parent_resource is not None
old_name = original_instance.name
new_name = plr_resource.name
parent_appended = False
# Update操作中包含改名需要先remove再add,这里更新父节点即可 # Update操作中包含改名需要先remove再add
if not not_same_parent and old_name != new_name: if original_instance.name != plr_resource.name:
old_name = original_instance.name
new_name = plr_resource.name
self.lab_logger().info(f"物料改名操作:{old_name} -> {new_name}") self.lab_logger().info(f"物料改名操作:{old_name} -> {new_name}")
# 收集所有相关的uuid包括子节点 # 收集所有相关的uuid包括子节点
@@ -852,10 +826,12 @@ class BaseROS2DeviceNode(Node, Generic[T]):
_handle_add([original_instance], tree_set, additional_add_params) _handle_add([original_instance], tree_set, additional_add_params)
self.lab_logger().info(f"物料改名完成:{old_name} -> {new_name}") self.lab_logger().info(f"物料改名完成:{old_name} -> {new_name}")
original_instances.append(original_parent_resource)
parent_appended = True
# 常规更新:不涉及改名 # 常规更新:不涉及改名
original_parent_resource = original_instance.parent
original_parent_resource_uuid = getattr(original_parent_resource, "unilabos_uuid", None)
target_parent_resource_uuid = tree.root_node.res_content.uuid_parent
self.lab_logger().info( self.lab_logger().info(
f"物料{original_instance} 原始父节点{original_parent_resource_uuid} " f"物料{original_instance} 原始父节点{original_parent_resource_uuid} "
f"目标父节点{target_parent_resource_uuid} 更新" f"目标父节点{target_parent_resource_uuid} 更新"
@@ -866,12 +842,13 @@ class BaseROS2DeviceNode(Node, Generic[T]):
original_instance.unilabos_extra = getattr(plr_resource, "unilabos_extra") # type: ignore # noqa: E501 original_instance.unilabos_extra = getattr(plr_resource, "unilabos_extra") # type: ignore # noqa: E501
# 如果父节点变化,需要重新挂载 # 如果父节点变化,需要重新挂载
if not_same_parent: if (
parent = self.transfer_to_new_resource(original_instance, tree, additional_add_params) original_parent_resource_uuid != target_parent_resource_uuid
original_instances.append(parent) and original_parent_resource is not None
parent_appended = True ):
self.transfer_to_new_resource(original_instance, tree, additional_add_params)
else: else:
# 判断是否变更了resource_site,重新登记 # 判断是否变更了resource_site
target_site = original_instance.unilabos_extra.get("update_resource_site") target_site = original_instance.unilabos_extra.get("update_resource_site")
sites = original_instance.parent.sites if original_instance.parent is not None and hasattr(original_instance.parent, "sites") else None sites = original_instance.parent.sites if original_instance.parent is not None and hasattr(original_instance.parent, "sites") else None
site_names = list(original_instance.parent._ordering.keys()) if original_instance.parent is not None and hasattr(original_instance.parent, "sites") else [] site_names = list(original_instance.parent._ordering.keys()) if original_instance.parent is not None and hasattr(original_instance.parent, "sites") else []
@@ -879,10 +856,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
site_index = sites.index(original_instance) site_index = sites.index(original_instance)
site_name = site_names[site_index] site_name = site_names[site_index]
if site_name != target_site: if site_name != target_site:
parent = self.transfer_to_new_resource(original_instance, tree, additional_add_params) self.transfer_to_new_resource(original_instance, tree, additional_add_params)
if parent is not None:
original_instances.append(parent)
parent_appended = True
# 加载状态 # 加载状态
original_instance.load_all_state(states) original_instance.load_all_state(states)
@@ -890,8 +864,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
self.lab_logger().info( self.lab_logger().info(
f"更新了资源属性 {plr_resource}[{tree.root_node.res_content.uuid}] " f"及其子节点 {child_count}" f"更新了资源属性 {plr_resource}[{tree.root_node.res_content.uuid}] " f"及其子节点 {child_count}"
) )
if not parent_appended: original_instances.append(original_instance)
original_instances.append(original_instance)
# 调用driver的update回调 # 调用driver的update回调
func = getattr(self.driver_instance, "resource_tree_update", None) func = getattr(self.driver_instance, "resource_tree_update", None)
@@ -908,8 +881,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
action = i.get("action") # remove, add, update action = i.get("action") # remove, add, update
resources_uuid: List[str] = i.get("data") # 资源数据 resources_uuid: List[str] = i.get("data") # 资源数据
additional_add_params = i.get("additional_add_params", {}) # 额外参数 additional_add_params = i.get("additional_add_params", {}) # 额外参数
self.lab_logger().trace( self.lab_logger().info(
f"[资源同步] 处理 {action}, " f"resources count: {len(resources_uuid)}" f"[Resource Tree Update] Processing {action} operation, " f"resources count: {len(resources_uuid)}"
) )
tree_set = None tree_set = None
if action in ["add", "update"]: if action in ["add", "update"]:
@@ -921,20 +894,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
if tree_set is None: if tree_set is None:
raise ValueError("tree_set不能为None") raise ValueError("tree_set不能为None")
plr_resources = tree_set.to_plr_resources() plr_resources = tree_set.to_plr_resources()
result, parents = _handle_add(plr_resources, tree_set, additional_add_params) result = _handle_add(plr_resources, tree_set, additional_add_params)
parents: List[Optional["ResourcePLR"]] = [i for i in parents if i is not None] new_tree_set = ResourceTreeSet.from_plr_resources(plr_resources)
# de_dupe_parents = list(set(parents))
# Fix unhashable type error for WareHouse
de_dupe_parents = []
_seen_ids = set()
for p in parents:
if id(p) not in _seen_ids:
_seen_ids.add(id(p))
de_dupe_parents.append(p)
new_tree_set = ResourceTreeSet.from_plr_resources(de_dupe_parents) # 去重
for tree in new_tree_set.trees:
if tree.root_node.res_content.uuid_parent is None and self.node_name != "host_node":
tree.root_node.res_content.parent_uuid = self.uuid
r = SerialCommand.Request() r = SerialCommand.Request()
r.command = json.dumps( r.command = json.dumps(
{"data": {"data": new_tree_set.dump()}, "action": "update"}) # 和Update Resource一致 {"data": {"data": new_tree_set.dump()}, "action": "update"}) # 和Update Resource一致
@@ -953,10 +914,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
plr_resources.append(ResourceTreeSet([tree]).to_plr_resources()[0]) plr_resources.append(ResourceTreeSet([tree]).to_plr_resources()[0])
result, original_instances = _handle_update(plr_resources, tree_set, additional_add_params) result, original_instances = _handle_update(plr_resources, tree_set, additional_add_params)
if not BasicConfig.no_update_feedback: if not BasicConfig.no_update_feedback:
new_tree_set = ResourceTreeSet.from_plr_resources(original_instances) # 去重 new_tree_set = ResourceTreeSet.from_plr_resources(original_instances)
for tree in new_tree_set.trees:
if tree.root_node.res_content.uuid_parent is None and self.node_name != "host_node":
tree.root_node.res_content.parent_uuid = self.uuid
r = SerialCommand.Request() r = SerialCommand.Request()
r.command = json.dumps( r.command = json.dumps(
{"data": {"data": new_tree_set.dump()}, "action": "update"}) # 和Update Resource一致 {"data": {"data": new_tree_set.dump()}, "action": "update"}) # 和Update Resource一致
@@ -976,15 +934,15 @@ class BaseROS2DeviceNode(Node, Generic[T]):
# 返回处理结果 # 返回处理结果
result_json = {"results": results, "total": len(data)} result_json = {"results": results, "total": len(data)}
res.response = json.dumps(result_json, ensure_ascii=False, cls=TypeEncoder) res.response = json.dumps(result_json, ensure_ascii=False, cls=TypeEncoder)
# self.lab_logger().info(f"[Resource Tree Update] Completed processing {len(data)} operations") self.lab_logger().info(f"[Resource Tree Update] Completed processing {len(data)} operations")
except json.JSONDecodeError as e: except json.JSONDecodeError as e:
error_msg = f"Invalid JSON format: {str(e)}" error_msg = f"Invalid JSON format: {str(e)}"
self.lab_logger().error(f"[资源同步] {error_msg}") self.lab_logger().error(f"[Resource Tree Update] {error_msg}")
res.response = json.dumps({"success": False, "error": error_msg}, ensure_ascii=False) res.response = json.dumps({"success": False, "error": error_msg}, ensure_ascii=False)
except Exception as e: except Exception as e:
error_msg = f"Unexpected error: {str(e)}" error_msg = f"Unexpected error: {str(e)}"
self.lab_logger().error(f"[资源同步] {error_msg}") self.lab_logger().error(f"[Resource Tree Update] {error_msg}")
self.lab_logger().error(traceback.format_exc()) self.lab_logger().error(traceback.format_exc())
res.response = json.dumps({"success": False, "error": error_msg}, ensure_ascii=False) res.response = json.dumps({"success": False, "error": error_msg}, ensure_ascii=False)
@@ -1305,8 +1263,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
ACTION, action_paramtypes = self.get_real_function(self.driver_instance, action_name) ACTION, action_paramtypes = self.get_real_function(self.driver_instance, action_name)
action_kwargs = convert_from_ros_msg_with_mapping(goal, action_value_mapping["goal"]) action_kwargs = convert_from_ros_msg_with_mapping(goal, action_value_mapping["goal"])
self.lab_logger().debug(f"任务 {ACTION.__name__} 接收到原始目标: {str(action_kwargs)[:1000]}") self.lab_logger().debug(f"任务 {ACTION.__name__} 接收到原始目标: {action_kwargs}")
self.lab_logger().trace(f"任务 {ACTION.__name__} 接收到原始目标: {action_kwargs}")
error_skip = False error_skip = False
# 向Host查询物料当前状态如果是host本身的增加物料的请求则直接跳过 # 向Host查询物料当前状态如果是host本身的增加物料的请求则直接跳过
if action_name not in ["create_resource_detailed", "create_resource"]: if action_name not in ["create_resource_detailed", "create_resource"]:
@@ -1322,14 +1279,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
# 批量查询资源 # 批量查询资源
queried_resources = [] queried_resources = []
for resource_data in resource_inputs: for resource_data in resource_inputs:
unilabos_uuid = resource_data.get("data", {}).get("unilabos_uuid") plr_resource = await self.get_resource_with_dir(
if unilabos_uuid is None: resource_id=resource_data["id"], with_children=True
plr_resource = await self.get_resource_with_dir( )
resource_id=resource_data["id"], with_children=True
)
else:
resource_tree = await self.get_resource([unilabos_uuid])
plr_resource = resource_tree.to_plr_resources()[0]
if "sample_id" in resource_data: if "sample_id" in resource_data:
plr_resource.unilabos_extra["sample_uuid"] = resource_data["sample_id"] plr_resource.unilabos_extra["sample_uuid"] = resource_data["sample_id"]
queried_resources.append(plr_resource) queried_resources.append(plr_resource)
@@ -1378,8 +1330,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
execution_success = True execution_success = True
except Exception as _: except Exception as _:
execution_error = traceback.format_exc() execution_error = traceback.format_exc()
error(f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{str(action_kwargs)[:1000]}") error(
trace(f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}") f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}"
)
future = ROS2DeviceNode.run_async_func(ACTION, trace_error=False, **action_kwargs) future = ROS2DeviceNode.run_async_func(ACTION, trace_error=False, **action_kwargs)
future.add_done_callback(_handle_future_exception) future.add_done_callback(_handle_future_exception)
@@ -1399,9 +1352,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
except Exception as _: except Exception as _:
execution_error = traceback.format_exc() execution_error = traceback.format_exc()
error( error(
f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{str(action_kwargs)[:1000]}") f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}"
trace( )
f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}")
future.add_done_callback(_handle_future_exception) future.add_done_callback(_handle_future_exception)
@@ -1469,7 +1421,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
for r in rs: for r in rs:
res = self.resource_tracker.parent_resource(r) # 获取 resource 对象 res = self.resource_tracker.parent_resource(r) # 获取 resource 对象
else: else:
res = self.resource_tracker.parent_resource(rs) res = self.resource_tracker.parent_resource(r)
if id(res) not in seen: if id(res) not in seen:
seen.add(id(res)) seen.add(id(res))
unique_resources.append(res) unique_resources.append(res)
@@ -1545,7 +1497,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
resource_data = function_args[arg_name] resource_data = function_args[arg_name]
if isinstance(resource_data, dict) and "id" in resource_data: if isinstance(resource_data, dict) and "id" in resource_data:
try: try:
function_args[arg_name] = self._convert_resources_sync(resource_data["uuid"])[0] converted_resource = self._convert_resource_sync(resource_data)
function_args[arg_name] = converted_resource
except Exception as e: except Exception as e:
self.lab_logger().error( self.lab_logger().error(
f"转换ResourceSlot参数 {arg_name} 失败: {e}\n{traceback.format_exc()}" f"转换ResourceSlot参数 {arg_name} 失败: {e}\n{traceback.format_exc()}"
@@ -1559,8 +1512,12 @@ class BaseROS2DeviceNode(Node, Generic[T]):
resource_list = function_args[arg_name] resource_list = function_args[arg_name]
if isinstance(resource_list, list): if isinstance(resource_list, list):
try: try:
uuids = [r["uuid"] for r in resource_list if isinstance(r, dict) and "id" in r] converted_resources = []
function_args[arg_name] = self._convert_resources_sync(*uuids) if uuids else [] for resource_data in resource_list:
if isinstance(resource_data, dict) and "id" in resource_data:
converted_resource = self._convert_resource_sync(resource_data)
converted_resources.append(converted_resource)
function_args[arg_name] = converted_resources
except Exception as e: except Exception as e:
self.lab_logger().error( self.lab_logger().error(
f"转换ResourceSlot列表参数 {arg_name} 失败: {e}\n{traceback.format_exc()}" f"转换ResourceSlot列表参数 {arg_name} 失败: {e}\n{traceback.format_exc()}"
@@ -1573,27 +1530,20 @@ class BaseROS2DeviceNode(Node, Generic[T]):
f"执行动作时JSON缺少function_name或function_args: {ex}\n原JSON: {string}\n{traceback.format_exc()}" f"执行动作时JSON缺少function_name或function_args: {ex}\n原JSON: {string}\n{traceback.format_exc()}"
) )
def _convert_resources_sync(self, *uuids: str) -> List["ResourcePLR"]: def _convert_resource_sync(self, resource_data: Dict[str, Any]):
"""同步转换资源 UUID 为实例 """同步转换资源数据为实例"""
# 创建资源查询请求
r = SerialCommand.Request()
r.command = json.dumps(
{
"id": resource_data.get("id", None),
"uuid": resource_data.get("uuid", None),
"with_children": True,
}
)
Args: # 同步调用资源查询服务
*uuids: 一个或多个资源 UUID future = self._resource_clients["resource_get"].call_async(r)
Returns:
单个 UUID 时返回单个资源实例,多个 UUID 时返回资源实例列表
"""
if not uuids:
raise ValueError("至少需要提供一个 UUID")
uuids_list = list(uuids)
future = self._resource_clients["c2s_update_resource_tree"].call_async(SerialCommand.Request(
command=json.dumps(
{
"data": {"data": uuids_list, "with_children": True},
"action": "get",
}
)
))
# 等待结果使用while循环每次sleep 0.05秒最多等待30秒 # 等待结果使用while循环每次sleep 0.05秒最多等待30秒
timeout = 30.0 timeout = 30.0
@@ -1603,40 +1553,27 @@ class BaseROS2DeviceNode(Node, Generic[T]):
elapsed += 0.05 elapsed += 0.05
if not future.done(): if not future.done():
raise Exception(f"资源查询超时: {uuids_list}") raise Exception(f"资源查询超时: {resource_data}")
response = future.result() response = future.result()
if response is None: if response is None:
raise Exception(f"资源查询返回空结果: {uuids_list}") raise Exception(f"资源查询返回空结果: {resource_data}")
raw_data = json.loads(response.response) raw_data = json.loads(response.response)
# 转换为 PLR 资源 # 转换为 PLR 资源
tree_set = ResourceTreeSet.from_raw_dict_list(raw_data) tree_set = ResourceTreeSet.from_raw_dict_list(raw_data)
if not len(tree_set.trees): plr_resource = tree_set.to_plr_resources()[0]
raise Exception(f"资源查询返回空树: {raw_data}")
plr_resources = tree_set.to_plr_resources()
# 通过资源跟踪器获取本地实例 # 通过资源跟踪器获取本地实例
figured_resources: List[ResourcePLR] = [] res = self.resource_tracker.figure_resource(plr_resource, try_mode=True)
for plr_resource, tree in zip(plr_resources, tree_set.trees): if len(res) == 0:
res = self.resource_tracker.figure_resource(plr_resource, try_mode=True) self.lab_logger().warning(f"资源转换未能索引到实例: {resource_data},返回新建实例")
if len(res) == 0: return plr_resource
self.lab_logger().warning(f"资源转换未能索引到实例: {tree.root_node.res_content},返回新建实例") elif len(res) == 1:
figured_resources.append(plr_resource) return res[0]
elif len(res) == 1: else:
figured_resources.append(res[0]) raise ValueError(f"资源转换得到多个实例: {res}")
else:
raise ValueError(f"资源转换得到多个实例: {res}")
mapped_plr_resources = []
for uuid in uuids_list:
for plr_resource in figured_resources:
r = self.resource_tracker.loop_find_with_uuid(plr_resource, uuid)
mapped_plr_resources.append(r)
break
return mapped_plr_resources
async def _execute_driver_command_async(self, string: str): async def _execute_driver_command_async(self, string: str):
try: try:

View File

@@ -5,8 +5,7 @@ import threading
import time import time
import traceback import traceback
import uuid import uuid
from typing import TYPE_CHECKING, Optional, Dict, Any, List, ClassVar, Set, Union from typing import TYPE_CHECKING, Optional, Dict, Any, List, ClassVar, Set, TypedDict, Union
from typing_extensions import TypedDict
from action_msgs.msg import GoalStatus from action_msgs.msg import GoalStatus
from geometry_msgs.msg import Point from geometry_msgs.msg import Point
@@ -24,7 +23,6 @@ from unilabos_msgs.srv._serial_command import SerialCommand_Request, SerialComma
from unique_identifier_msgs.msg import UUID from unique_identifier_msgs.msg import UUID
from unilabos.registry.registry import lab_registry from unilabos.registry.registry import lab_registry
from unilabos.resources.container import RegularContainer
from unilabos.resources.graphio import initialize_resource from unilabos.resources.graphio import initialize_resource
from unilabos.resources.registry import add_schema from unilabos.resources.registry import add_schema
from unilabos.ros.initialize_device import initialize_device_from_dict from unilabos.ros.initialize_device import initialize_device_from_dict
@@ -63,18 +61,6 @@ class TestResourceReturn(TypedDict):
devices: List[DeviceSlot] devices: List[DeviceSlot]
class TestLatencyReturn(TypedDict):
"""test_latency方法的返回值类型"""
avg_rtt_ms: float
avg_time_diff_ms: float
max_time_error_ms: float
task_delay_ms: float
raw_delay_ms: float
test_count: int
status: str
class HostNode(BaseROS2DeviceNode): class HostNode(BaseROS2DeviceNode):
""" """
主机节点类,负责管理设备、资源和控制器 主机节点类,负责管理设备、资源和控制器
@@ -375,7 +361,8 @@ class HostNode(BaseROS2DeviceNode):
request.command = "" request.command = ""
future = sclient.call_async(request) future = sclient.call_async(request)
# Use timeout for result as well # Use timeout for result as well
future.result() future.result(timeout_sec=5.0)
self.lab_logger().debug(f"[Host Node] Re-register completed for {device_namespace}")
except Exception as e: except Exception as e:
# Gracefully handle destruction during shutdown # Gracefully handle destruction during shutdown
if "destruction was requested" in str(e) or self._shutting_down: if "destruction was requested" in str(e) or self._shutting_down:
@@ -599,10 +586,11 @@ class HostNode(BaseROS2DeviceNode):
) )
try: try:
assert len(response) == 1, "Create Resource应当只返回一个结果" new_li = []
for i in response: for i in response:
res = json.loads(i) res = json.loads(i)
return res new_li.append(res)
return {"resources": new_li, "liquid_input_resources": new_li}
except Exception as ex: except Exception as ex:
pass pass
_n = "\n" _n = "\n"
@@ -807,8 +795,7 @@ class HostNode(BaseROS2DeviceNode):
assign_sample_id(action_kwargs) assign_sample_id(action_kwargs)
goal_msg = convert_to_ros_msg(action_client._action_type.Goal(), action_kwargs) goal_msg = convert_to_ros_msg(action_client._action_type.Goal(), action_kwargs)
self.lab_logger().info(f"[Host Node] Sending goal for {action_id}: {str(goal_msg)[:1000]}") self.lab_logger().info(f"[Host Node] Sending goal for {action_id}: {goal_msg}")
self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {goal_msg}")
action_client.wait_for_server() action_client.wait_for_server()
goal_uuid_obj = UUID(uuid=list(u.bytes)) goal_uuid_obj = UUID(uuid=list(u.bytes))
@@ -866,13 +853,8 @@ class HostNode(BaseROS2DeviceNode):
# 适配后端的一些额外处理 # 适配后端的一些额外处理
return_value = return_info.get("return_value") return_value = return_info.get("return_value")
if isinstance(return_value, dict): if isinstance(return_value, dict):
unilabos_samples = return_value.pop("unilabos_samples", None) unilabos_samples = return_info.get("unilabos_samples")
if isinstance(unilabos_samples, list) and unilabos_samples: if isinstance(unilabos_samples, list):
self.lab_logger().info(
f"[Host Node] Job {job_id[:8]} returned {len(unilabos_samples)} sample(s): "
f"{[s.get('name', s.get('id', 'unknown')) if isinstance(s, dict) else str(s)[:20] for s in unilabos_samples[:5]]}"
f"{'...' if len(unilabos_samples) > 5 else ''}"
)
return_info["unilabos_samples"] = unilabos_samples return_info["unilabos_samples"] = unilabos_samples
suc = return_info.get("suc", False) suc = return_info.get("suc", False)
if not suc: if not suc:
@@ -899,7 +881,7 @@ class HostNode(BaseROS2DeviceNode):
# 清理 _goals 中的记录 # 清理 _goals 中的记录
if job_id in self._goals: if job_id in self._goals:
del self._goals[job_id] del self._goals[job_id]
self.lab_logger().trace(f"[Host Node] Removed goal {job_id[:8]} from _goals") self.lab_logger().debug(f"[Host Node] Removed goal {job_id[:8]} from _goals")
# 存储结果供 HTTP API 查询 # 存储结果供 HTTP API 查询
try: try:
@@ -1151,11 +1133,11 @@ class HostNode(BaseROS2DeviceNode):
接收序列化的 ResourceTreeSet 数据并进行处理 接收序列化的 ResourceTreeSet 数据并进行处理
""" """
self.lab_logger().info(f"[Host Node-Resource] Resource tree add request received")
try: try:
# 解析请求数据 # 解析请求数据
data = json.loads(request.command) data = json.loads(request.command)
action = data["action"] action = data["action"]
self.lab_logger().info(f"[Host Node-Resource] Resource tree {action} request received")
data = data["data"] data = data["data"]
if action == "add": if action == "add":
await self._resource_tree_action_add_callback(data, response) await self._resource_tree_action_add_callback(data, response)
@@ -1261,7 +1243,7 @@ class HostNode(BaseROS2DeviceNode):
data = json.loads(request.command) data = json.loads(request.command)
if "uuid" in data and data["uuid"] is not None: if "uuid" in data and data["uuid"] is not None:
http_req = http_client.resource_tree_get([data["uuid"]], data["with_children"]) http_req = http_client.resource_tree_get([data["uuid"]], data["with_children"])
elif "id" in data: elif "id" in data and data["id"].startswith("/"):
http_req = http_client.resource_get(data["id"], data["with_children"]) http_req = http_client.resource_get(data["id"], data["with_children"])
else: else:
raise ValueError("没有使用正确的物料 id 或 uuid") raise ValueError("没有使用正确的物料 id 或 uuid")
@@ -1344,20 +1326,10 @@ class HostNode(BaseROS2DeviceNode):
self.lab_logger().debug(f"[Host Node-Resource] List parameters: {request}") self.lab_logger().debug(f"[Host Node-Resource] List parameters: {request}")
return response return response
def test_latency(self) -> TestLatencyReturn: def test_latency(self):
""" """
测试网络延迟的action实现 测试网络延迟的action实现
通过5次ping-pong机制校对时间误差并计算实际延迟 通过5次ping-pong机制校对时间误差并计算实际延迟
Returns:
TestLatencyReturn: 包含延迟测试结果的字典,包括:
- avg_rtt_ms: 平均往返时间(毫秒)
- avg_time_diff_ms: 平均时间差(毫秒)
- max_time_error_ms: 最大时间误差(毫秒)
- task_delay_ms: 实际任务延迟(毫秒),-1表示无法计算
- raw_delay_ms: 原始时间差(毫秒),-1表示无法计算
- test_count: 有效测试次数
- status: 测试状态,"success"表示成功,"all_timeout"表示全部超时
""" """
import uuid as uuid_module import uuid as uuid_module
@@ -1420,15 +1392,7 @@ class HostNode(BaseROS2DeviceNode):
if not ping_results: if not ping_results:
self.lab_logger().error("❌ 所有ping-pong测试都失败了") self.lab_logger().error("❌ 所有ping-pong测试都失败了")
return { return {"status": "all_timeout"}
"avg_rtt_ms": -1.0,
"avg_time_diff_ms": -1.0,
"max_time_error_ms": -1.0,
"task_delay_ms": -1.0,
"raw_delay_ms": -1.0,
"test_count": 0,
"status": "all_timeout",
}
# 统计分析 # 统计分析
rtts = [r["rtt_ms"] for r in ping_results] rtts = [r["rtt_ms"] for r in ping_results]
@@ -1436,7 +1400,7 @@ class HostNode(BaseROS2DeviceNode):
avg_rtt_ms = sum(rtts) / len(rtts) avg_rtt_ms = sum(rtts) / len(rtts)
avg_time_diff_ms = sum(time_diffs) / len(time_diffs) avg_time_diff_ms = sum(time_diffs) / len(time_diffs)
max_time_diff_error_ms: float = max(abs(min(time_diffs)), abs(max(time_diffs))) max_time_diff_error_ms = max(abs(min(time_diffs)), abs(max(time_diffs)))
self.lab_logger().info("-" * 50) self.lab_logger().info("-" * 50)
self.lab_logger().info("[测试统计]") self.lab_logger().info("[测试统计]")
@@ -1476,7 +1440,7 @@ class HostNode(BaseROS2DeviceNode):
self.lab_logger().info("=" * 60) self.lab_logger().info("=" * 60)
res: TestLatencyReturn = { return {
"avg_rtt_ms": avg_rtt_ms, "avg_rtt_ms": avg_rtt_ms,
"avg_time_diff_ms": avg_time_diff_ms, "avg_time_diff_ms": avg_time_diff_ms,
"max_time_error_ms": max_time_diff_error_ms, "max_time_error_ms": max_time_diff_error_ms,
@@ -1487,23 +1451,12 @@ class HostNode(BaseROS2DeviceNode):
"test_count": len(ping_results), "test_count": len(ping_results),
"status": "success", "status": "success",
} }
return res
def test_resource( def test_resource(
self, self, resource: ResourceSlot, resources: List[ResourceSlot], device: DeviceSlot, devices: List[DeviceSlot]
resource: ResourceSlot = None,
resources: List[ResourceSlot] = None,
device: DeviceSlot = None,
devices: List[DeviceSlot] = None,
) -> TestResourceReturn: ) -> TestResourceReturn:
if resources is None:
resources = []
if devices is None:
devices = []
if resource is None:
resource = RegularContainer("test_resource传入None")
return { return {
"resources": ResourceTreeSet.from_plr_resources([resource, *resources], known_newly_created=True).dump(), "resources": ResourceTreeSet.from_plr_resources([resource, *resources]).dump(),
"devices": [device, *devices], "devices": [device, *devices],
} }
@@ -1555,9 +1508,7 @@ class HostNode(BaseROS2DeviceNode):
# 构建服务地址 # 构建服务地址
srv_address = f"/srv{namespace}/s2c_resource_tree" srv_address = f"/srv{namespace}/s2c_resource_tree"
self.lab_logger().trace( self.lab_logger().info(f"[Host Node-Resource] Notifying {device_id} for resource tree {action} operation")
f"[Host Node-Resource] Host -> {device_id} ResourceTree {action} operation started -------"
)
# 创建服务客户端 # 创建服务客户端
sclient = self.create_client(SerialCommand, srv_address) sclient = self.create_client(SerialCommand, srv_address)
@@ -1592,8 +1543,8 @@ class HostNode(BaseROS2DeviceNode):
time.sleep(0.05) time.sleep(0.05)
response = future.result() response = future.result()
self.lab_logger().trace( self.lab_logger().info(
f"[Host Node-Resource] Host -> {device_id} ResourceTree {action} operation completed -------" f"[Host Node-Resource] Resource tree {action} notification completed for {device_id}"
) )
return True return True

View File

@@ -9,125 +9,49 @@
"parent": null, "parent": null,
"type": "device", "type": "device",
"class": "bioyond_dispensing_station", "class": "bioyond_dispensing_station",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": { "config": {
"api_key": "YOUR_API_KEY", "config": {
"api_host": "http://your-api-host:port", "api_key": "DE9BDDA0",
"material_type_mappings": { "api_host": "http://192.168.1.200:44388",
"BIOYOND_PolymerStation_1FlaskCarrier": [ "material_type_mappings": {
"烧杯", "BIOYOND_PolymerStation_1FlaskCarrier": [
"uuid-placeholder-flask" "烧杯",
], "3a14196b-24f2-ca49-9081-0cab8021bf1a"
"BIOYOND_PolymerStation_1BottleCarrier": [ ],
"试剂瓶", "BIOYOND_PolymerStation_1BottleCarrier": [
"uuid-placeholder-bottle" "试剂瓶",
], "3a14196b-8bcf-a460-4f74-23f21ca79e72"
"BIOYOND_PolymerStation_6StockCarrier": [ ],
"分装板", "BIOYOND_PolymerStation_6StockCarrier": [
"uuid-placeholder-stock-6" "分装板",
], "3a14196e-5dfe-6e21-0c79-fe2036d052c4"
"BIOYOND_PolymerStation_Liquid_Vial": [ ],
"10%分装小瓶", "BIOYOND_PolymerStation_Liquid_Vial": [
"uuid-placeholder-liquid-vial" "10%分装小瓶",
], "3a14196c-76be-2279-4e22-7310d69aed68"
"BIOYOND_PolymerStation_Solid_Vial": [ ],
"90%分装小瓶", "BIOYOND_PolymerStation_Solid_Vial": [
"uuid-placeholder-solid-vial" "90%分装小瓶",
], "3a14196c-cdcf-088d-dc7d-5cf38f0ad9ea"
"BIOYOND_PolymerStation_8StockCarrier": [ ],
"样品板", "BIOYOND_PolymerStation_8StockCarrier": [
"uuid-placeholder-stock-8" "样品板",
], "3a14196e-b7a0-a5da-1931-35f3000281e9"
"BIOYOND_PolymerStation_Solid_Stock": [ ],
"样品瓶", "BIOYOND_PolymerStation_Solid_Stock": [
"uuid-placeholder-solid-stock" "样品瓶",
] "3a14196a-cf7d-8aea-48d8-b9662c7dba94"
}, ]
"warehouse_mapping": {
"粉末堆栈": {
"uuid": "uuid-placeholder-powder-stack",
"site_uuids": {
"A01": "uuid-placeholder-powder-A01",
"A02": "uuid-placeholder-powder-A02",
"A03": "uuid-placeholder-powder-A03",
"A04": "uuid-placeholder-powder-A04",
"B01": "uuid-placeholder-powder-B01",
"B02": "uuid-placeholder-powder-B02",
"B03": "uuid-placeholder-powder-B03",
"B04": "uuid-placeholder-powder-B04",
"C01": "uuid-placeholder-powder-C01",
"C02": "uuid-placeholder-powder-C02",
"C03": "uuid-placeholder-powder-C03",
"C04": "uuid-placeholder-powder-C04",
"D01": "uuid-placeholder-powder-D01",
"D02": "uuid-placeholder-powder-D02",
"D03": "uuid-placeholder-powder-D03",
"D04": "uuid-placeholder-powder-D04"
}
},
"溶液堆栈": {
"uuid": "uuid-placeholder-liquid-stack",
"site_uuids": {
"A01": "uuid-placeholder-liquid-A01",
"A02": "uuid-placeholder-liquid-A02",
"A03": "uuid-placeholder-liquid-A03",
"A04": "uuid-placeholder-liquid-A04",
"B01": "uuid-placeholder-liquid-B01",
"B02": "uuid-placeholder-liquid-B02",
"B03": "uuid-placeholder-liquid-B03",
"B04": "uuid-placeholder-liquid-B04",
"C01": "uuid-placeholder-liquid-C01",
"C02": "uuid-placeholder-liquid-C02",
"C03": "uuid-placeholder-liquid-C03",
"C04": "uuid-placeholder-liquid-C04",
"D01": "uuid-placeholder-liquid-D01",
"D02": "uuid-placeholder-liquid-D02",
"D03": "uuid-placeholder-liquid-D03",
"D04": "uuid-placeholder-liquid-D04"
}
},
"试剂堆栈": {
"uuid": "uuid-placeholder-reagent-stack",
"site_uuids": {
"A01": "uuid-placeholder-reagent-A01",
"A02": "uuid-placeholder-reagent-A02",
"A03": "uuid-placeholder-reagent-A03",
"A04": "uuid-placeholder-reagent-A04",
"B01": "uuid-placeholder-reagent-B01",
"B02": "uuid-placeholder-reagent-B02",
"B03": "uuid-placeholder-reagent-B03",
"B04": "uuid-placeholder-reagent-B04"
}
} }
}, },
"http_service_config": { "deck": {
"http_service_host": "127.0.0.1", "data": {
"http_service_port": 8080 "_resource_child_name": "Bioyond_Dispensing_Deck",
}, "_resource_type": "unilabos.resources.bioyond.decks:BIOYOND_PolymerPreparationStation_Deck"
"material_default_parameters": {
"NMP": {
"unit": "毫升",
"density": "1.03",
"densityUnit": "g/mL",
"description": "N-甲基吡咯烷酮 (N-Methyl-2-pyrrolidone)"
} }
}, },
"material_type_parameters": {} "protocol_type": []
}, },
"deck": {
"data": {
"_resource_child_name": "Bioyond_Dispensing_Deck",
"_resource_type": "unilabos.resources.bioyond.decks:BIOYOND_PolymerPreparationStation_Deck"
}
},
"size_x": 2700.0,
"size_y": 1080.0,
"size_z": 1500.0,
"protocol_type": [],
"data": {} "data": {}
}, },
{ {
@@ -156,4 +80,4 @@
"data": {} "data": {}
} }
] ]
} }

View File

@@ -14,200 +14,60 @@
], ],
"type": "device", "type": "device",
"class": "reaction_station.bioyond", "class": "reaction_station.bioyond",
"position": { "position": {"x": 0, "y": 3800, "z": 0},
"x": 0,
"y": 1100,
"z": 0
},
"config": { "config": {
"api_key": "YOUR_API_KEY", "config": {
"api_host": "http://your-api-host:port", "api_key": "DE9BDDA0",
"workflow_mappings": { "api_host": "http://192.168.1.200:44402",
"reactor_taken_out": "workflow-uuid-reactor-out", "workflow_mappings": {
"reactor_taken_in": "workflow-uuid-reactor-in", "reactor_taken_out": "3a16081e-4788-ca37-eff4-ceed8d7019d1",
"Solid_feeding_vials": "workflow-uuid-solid-vials", "reactor_taken_in": "3a160df6-76b3-0957-9eb0-cb496d5721c6",
"Liquid_feeding_vials(non-titration)": "workflow-uuid-liquid-vials", "Solid_feeding_vials": "3a160877-87e7-7699-7bc6-ec72b05eb5e6",
"Liquid_feeding_solvents": "workflow-uuid-solvents", "Liquid_feeding_vials(non-titration)": "3a167d99-6158-c6f0-15b5-eb030f7d8e47",
"Liquid_feeding(titration)": "workflow-uuid-titration", "Liquid_feeding_solvents": "3a160824-0665-01ed-285a-51ef817a9046",
"liquid_feeding_beaker": "workflow-uuid-beaker", "Liquid_feeding(titration)": "3a16082a-96ac-0449-446a-4ed39f3365b6",
"Drip_back": "workflow-uuid-drip-back" "liquid_feeding_beaker": "3a16087e-124f-8ddb-8ec1-c2dff09ca784",
}, "Drip_back": "3a162cf9-6aac-565a-ddd7-682ba1796a4a"
"material_type_mappings": {
"BIOYOND_PolymerStation_Reactor": [
"反应器",
"uuid-placeholder-reactor"
],
"BIOYOND_PolymerStation_1BottleCarrier": [
"试剂瓶",
"uuid-placeholder-bottle"
],
"BIOYOND_PolymerStation_1FlaskCarrier": [
"烧杯",
"uuid-placeholder-beaker"
],
"BIOYOND_PolymerStation_6StockCarrier": [
"样品板",
"uuid-placeholder-sample-plate"
],
"BIOYOND_PolymerStation_Solid_Vial": [
"90%分装小瓶",
"uuid-placeholder-solid-vial"
],
"BIOYOND_PolymerStation_Liquid_Vial": [
"10%分装小瓶",
"uuid-placeholder-liquid-vial"
],
"BIOYOND_PolymerStation_TipBox": [
"枪头盒",
"uuid-placeholder-tipbox"
],
"BIOYOND_PolymerStation_Measurement_Vial": [
"测量小瓶",
"uuid-placeholder-measure-vial"
]
},
"warehouse_mapping": {
"堆栈1左": {
"uuid": "uuid-placeholder-stack1-left",
"site_uuids": {
"A01": "uuid-placeholder-site-A01",
"A02": "uuid-placeholder-site-A02",
"A03": "uuid-placeholder-site-A03",
"A04": "uuid-placeholder-site-A04",
"B01": "uuid-placeholder-site-B01",
"B02": "uuid-placeholder-site-B02",
"B03": "uuid-placeholder-site-B03",
"B04": "uuid-placeholder-site-B04",
"C01": "uuid-placeholder-site-C01",
"C02": "uuid-placeholder-site-C02",
"C03": "uuid-placeholder-site-C03",
"C04": "uuid-placeholder-site-C04",
"D01": "uuid-placeholder-site-D01",
"D02": "uuid-placeholder-site-D02",
"D03": "uuid-placeholder-site-D03",
"D04": "uuid-placeholder-site-D04"
}
}, },
"堆栈1右": { "material_type_mappings": {
"uuid": "uuid-placeholder-stack1-right", "BIOYOND_PolymerStation_Reactor": [
"site_uuids": { "反应器",
"A05": "uuid-placeholder-site-A05", "3a14233b-902d-0d7b-4533-3f60f1c41c1b"
"A06": "uuid-placeholder-site-A06", ],
"A07": "uuid-placeholder-site-A07", "BIOYOND_PolymerStation_1BottleCarrier": [
"A08": "uuid-placeholder-site-A08", "试剂瓶",
"B05": "uuid-placeholder-site-B05", "3a14233b-56e3-6c53-a8ab-fcaac163a9ba"
"B06": "uuid-placeholder-site-B06", ],
"B07": "uuid-placeholder-site-B07", "BIOYOND_PolymerStation_1FlaskCarrier": [
"B08": "uuid-placeholder-site-B08", "烧杯",
"C05": "uuid-placeholder-site-C05", "3a14233b-f0a9-ba84-eaa9-0d4718b361b6"
"C06": "uuid-placeholder-site-C06", ],
"C07": "uuid-placeholder-site-C07", "BIOYOND_PolymerStation_6StockCarrier": [
"C08": "uuid-placeholder-site-C08", "样品板",
"D05": "uuid-placeholder-site-D05", "3a142339-80de-8f25-6093-1b1b1b6c322e"
"D06": "uuid-placeholder-site-D06", ],
"D07": "uuid-placeholder-site-D07", "BIOYOND_PolymerStation_Solid_Vial": [
"D08": "uuid-placeholder-site-D08" "90%分装小瓶",
} "3a14233a-26e1-28f8-af6a-60ca06ba0165"
}, ],
"站内试剂存放堆栈": { "BIOYOND_PolymerStation_Liquid_Vial": [
"uuid": "uuid-placeholder-reagent-stack", "10%分装小瓶",
"site_uuids": { "3a14233a-84a3-088d-6676-7cb4acd57c64"
"A01": "uuid-placeholder-reagent-A01", ],
"A02": "uuid-placeholder-reagent-A02" "BIOYOND_PolymerStation_TipBox": [
} "枪头盒",
}, "3a143890-9d51-60ac-6d6f-6edb43c12041"
"测量小瓶仓库(测密度)": { ]
"uuid": "uuid-placeholder-density-stack",
"site_uuids": {
"A01": "uuid-placeholder-density-A01",
"A02": "uuid-placeholder-density-A02",
"A03": "uuid-placeholder-density-A03",
"B01": "uuid-placeholder-density-B01",
"B02": "uuid-placeholder-density-B02",
"B03": "uuid-placeholder-density-B03"
}
},
"站内Tip盒堆栈(左)": {
"uuid": "uuid-placeholder-tipstack-left",
"site_uuids": {
"A02": "uuid-placeholder-tip-A02",
"A03": "uuid-placeholder-tip-A03",
"B02": "uuid-placeholder-tip-B02",
"B03": "uuid-placeholder-tip-B03"
}
},
"站内Tip盒堆栈(右)": {
"uuid": "uuid-placeholder-tipstack-right",
"site_uuids": {
"A01": "uuid-placeholder-tip-A01",
"B01": "uuid-placeholder-tip-B01"
}
} }
}, },
"workflow_to_section_map": { "deck": {
"reactor_taken_in": "反应器放入", "data": {
"reactor_taken_out": "反应器取出", "_resource_child_name": "Bioyond_Deck",
"Solid_feeding_vials": "固体投料-小瓶", "_resource_type": "unilabos.resources.bioyond.decks:BIOYOND_PolymerReactionStation_Deck"
"Liquid_feeding_vials(non-titration)": "液体投料-小瓶(非滴定)",
"Liquid_feeding_solvents": "液体投料-溶剂",
"Liquid_feeding(titration)": "液体投料-滴定",
"liquid_feeding_beaker": "液体投料-烧杯",
"Drip_back": "液体回滴"
},
"action_names": {
"reactor_taken_in": {
"config": "通量-配置",
"stirring": "反应模块-开始搅拌"
},
"solid_feeding_vials": {
"feeding": "粉末加样模块-投料",
"observe": "反应模块-观察搅拌结果"
},
"liquid_feeding_vials_non_titration": {
"liquid": "稀释液瓶加液位-液体投料",
"observe": "反应模块-滴定结果观察"
},
"liquid_feeding_solvents": {
"liquid": "试剂AB放置位-试剂吸液分液",
"observe": "反应模块-观察搅拌结果"
},
"liquid_feeding_titration": {
"liquid": "稀释液瓶加液位-稀释液吸液分液",
"observe": "反应模块-滴定结果观察"
},
"liquid_feeding_beaker": {
"liquid": "烧杯溶液放置位-烧杯吸液分液",
"observe": "反应模块-观察搅拌结果"
},
"drip_back": {
"liquid": "试剂AB放置位-试剂吸液分液",
"observe": "反应模块-向下滴定结果观察"
} }
}, },
"http_service_config": { "protocol_type": []
"http_service_host": "127.0.0.1",
"http_service_port": 8080
},
"material_default_parameters": {
"NMP": {
"unit": "毫升",
"density": "1.03",
"densityUnit": "g/mL",
"description": "N-甲基吡咯烷酮 (N-Methyl-2-pyrrolidone)"
}
},
"material_type_parameters": {}
}, },
"deck": {
"data": {
"_resource_child_name": "Bioyond_Deck",
"_resource_type": "unilabos.resources.bioyond.decks:BIOYOND_PolymerReactionStation_Deck"
}
},
"size_x": 2700.0,
"size_y": 1080.0,
"size_z": 2500.0,
"protocol_type": [],
"data": {} "data": {}
}, },
{ {
@@ -217,11 +77,7 @@
"parent": "reaction_station_bioyond", "parent": "reaction_station_bioyond",
"type": "device", "type": "device",
"class": "reaction_station.reactor", "class": "reaction_station.reactor",
"position": { "position": {"x": 1150, "y": 380, "z": 0},
"x": 1150,
"y": 300,
"z": 0
},
"config": {}, "config": {},
"data": {} "data": {}
}, },
@@ -232,11 +88,7 @@
"parent": "reaction_station_bioyond", "parent": "reaction_station_bioyond",
"type": "device", "type": "device",
"class": "reaction_station.reactor", "class": "reaction_station.reactor",
"position": { "position": {"x": 1365, "y": 380, "z": 0},
"x": 1365,
"y": 300,
"z": 0
},
"config": {}, "config": {},
"data": {} "data": {}
}, },
@@ -247,11 +99,7 @@
"parent": "reaction_station_bioyond", "parent": "reaction_station_bioyond",
"type": "device", "type": "device",
"class": "reaction_station.reactor", "class": "reaction_station.reactor",
"position": { "position": {"x": 1580, "y": 380, "z": 0},
"x": 1580,
"y": 300,
"z": 0
},
"config": {}, "config": {},
"data": {} "data": {}
}, },
@@ -262,11 +110,7 @@
"parent": "reaction_station_bioyond", "parent": "reaction_station_bioyond",
"type": "device", "type": "device",
"class": "reaction_station.reactor", "class": "reaction_station.reactor",
"position": { "position": {"x": 1790, "y": 380, "z": 0},
"x": 1790,
"y": 300,
"z": 0
},
"config": {}, "config": {},
"data": {} "data": {}
}, },
@@ -277,11 +121,7 @@
"parent": "reaction_station_bioyond", "parent": "reaction_station_bioyond",
"type": "device", "type": "device",
"class": "reaction_station.reactor", "class": "reaction_station.reactor",
"position": { "position": {"x": 2010, "y": 380, "z": 0},
"x": 2010,
"y": 300,
"z": 0
},
"config": {}, "config": {},
"data": {} "data": {}
}, },
@@ -294,7 +134,7 @@
"class": "BIOYOND_PolymerReactionStation_Deck", "class": "BIOYOND_PolymerReactionStation_Deck",
"position": { "position": {
"x": 0, "x": 0,
"y": 1100, "y": 0,
"z": 0 "z": 0
}, },
"config": { "config": {
@@ -310,4 +150,4 @@
"data": {} "data": {}
} }
] ]
} }

View File

@@ -1,28 +0,0 @@
{
"nodes": [
{
"id": "workbench_1",
"name": "虚拟工作台",
"children": [],
"parent": null,
"type": "device",
"class": "virtual_workbench",
"position": {
"x": 400,
"y": 300,
"z": 0
},
"config": {
"arm_operation_time": 3.0,
"heating_time": 10.0,
"num_heating_stations": 3
},
"data": {
"status": "Ready",
"arm_state": "idle",
"message": "工作台就绪"
}
}
],
"links": []
}

View File

@@ -182,49 +182,3 @@ def get_all_subscriptions(instance) -> list:
except Exception: except Exception:
pass pass
return subscriptions return subscriptions
def not_action(func: F) -> F:
"""
标记方法为非动作的装饰器
用于装饰 driver 类中的方法,使其在 complete_registry 时不被识别为动作。
适用于辅助方法、内部工具方法等不应暴露为设备动作的公共方法。
Example:
class MyDriver:
@not_action
def helper_method(self):
# 这个方法不会被注册为动作
pass
def actual_action(self, param: str):
# 这个方法会被注册为动作
self.helper_method()
Note:
- 可以与其他装饰器组合使用,@not_action 应放在最外层
- 仅影响 complete_registry 的动作识别,不影响方法的正常调用
"""
@wraps(func)
def wrapper(*args, **kwargs):
return func(*args, **kwargs)
# 在函数上附加标记
wrapper._is_not_action = True # type: ignore[attr-defined]
return wrapper # type: ignore[return-value]
def is_not_action(func) -> bool:
"""
检查函数是否被标记为非动作
Args:
func: 被检查的函数
Returns:
如果函数被 @not_action 装饰则返回 True否则返回 False
"""
return getattr(func, "_is_not_action", False)

View File

@@ -28,7 +28,6 @@ __all__ = [
from ast import Constant from ast import Constant
from unilabos.utils import logger from unilabos.utils import logger
from unilabos.utils.decorator import is_not_action
class ImportManager: class ImportManager:
@@ -276,9 +275,6 @@ class ImportManager:
method_info = self._analyze_method_signature(method) method_info = self._analyze_method_signature(method)
result["status_methods"][actual_name] = method_info result["status_methods"][actual_name] = method_info
elif not name.startswith("_"): elif not name.startswith("_"):
# 检查是否被 @not_action 装饰器标记
if is_not_action(method):
continue
# 其他非_开头的方法归类为action # 其他非_开头的方法归类为action
method_info = self._analyze_method_signature(method) method_info = self._analyze_method_signature(method)
result["action_methods"][name] = method_info result["action_methods"][name] = method_info
@@ -334,9 +330,6 @@ class ImportManager:
if actual_name not in result["status_methods"]: if actual_name not in result["status_methods"]:
result["status_methods"][actual_name] = method_info result["status_methods"][actual_name] = method_info
else: else:
# 检查是否被 @not_action 装饰器标记
if self._is_not_action_method(node):
continue
# 其他非_开头的方法归类为action # 其他非_开头的方法归类为action
result["action_methods"][method_name] = method_info result["action_methods"][method_name] = method_info
return result return result
@@ -457,13 +450,6 @@ class ImportManager:
return True return True
return False return False
def _is_not_action_method(self, node: ast.FunctionDef) -> bool:
"""检查是否是@not_action装饰的方法"""
for decorator in node.decorator_list:
if isinstance(decorator, ast.Name) and decorator.id == "not_action":
return True
return False
def _get_property_name_from_setter(self, node: ast.FunctionDef) -> str: def _get_property_name_from_setter(self, node: ast.FunctionDef) -> str:
"""从setter装饰器中获取属性名""" """从setter装饰器中获取属性名"""
for decorator in node.decorator_list: for decorator in node.decorator_list:

View File

@@ -191,6 +191,21 @@ def configure_logger(loglevel=None, working_dir=None):
# 添加处理器到根日志记录器 # 添加处理器到根日志记录器
root_logger.addHandler(console_handler) root_logger.addHandler(console_handler)
# 降低第三方库的日志级别,避免过多输出
# pymodbus 库的日志太详细,设置为 WARNING
logging.getLogger('pymodbus').setLevel(logging.WARNING)
logging.getLogger('pymodbus.logging').setLevel(logging.WARNING)
logging.getLogger('pymodbus.logging.base').setLevel(logging.WARNING)
logging.getLogger('pymodbus.logging.decoders').setLevel(logging.WARNING)
# websockets 库的日志输出较多,设置为 WARNING
logging.getLogger('websockets').setLevel(logging.WARNING)
logging.getLogger('websockets.client').setLevel(logging.WARNING)
logging.getLogger('websockets.server').setLevel(logging.WARNING)
# ROS 节点的状态更新日志过于频繁,设置为 INFO
logging.getLogger('unilabos.ros.nodes.presets.host_node').setLevel(logging.INFO)
# 如果指定了工作目录,添加文件处理器 # 如果指定了工作目录,添加文件处理器
if working_dir is not None: if working_dir is not None: