Auto dump logs, fix workstation input schema

* change 9320 desk row number to 4

* Updated 9320 host address

* Updated 9320 host address

* Add **kwargs in classes: PRCXI9300Deck and PRCXI9300Container

* Removed all sample_id in prcxi_9320.json to avoid KeyError

* 9320 machine testing settings

* Typo

* Typo in base_device_node.py

* Enhance liquid handling functionality by adding support for multiple transfer modes (one-to-many, one-to-one, many-to-one) and improving parameter validation. Default channel usage is set when not specified. Adjusted mixing logic to ensure it only occurs when valid conditions are met. Updated documentation for clarity.

unilabos/app/main.py

@@ -218,7 +218,7 @@ def main():
 
     if hasattr(BasicConfig, "log_level"):
         logger.info(f"Log level set to '{BasicConfig.log_level}' from config file.")
-        configure_logger(loglevel=BasicConfig.log_level)
+        configure_logger(loglevel=BasicConfig.log_level, working_dir=working_dir)
 
     if args_dict["addr"] == "test":
         print_status("使用测试环境地址", "info")

unilabos/devices/liquid_handling/liquid_handler_abstract.py

@@ -147,6 +147,9 @@ class LiquidHandlerMiddleware(LiquidHandler):
         offsets: Optional[List[Coordinate]] = None,
         **backend_kwargs,
     ):
+        # 如果 use_channels 为 None，使用默认值（所有通道）
+        if use_channels is None:
+            use_channels = list(range(self.channel_num))
         if not offsets or (isinstance(offsets, list) and len(offsets) != len(use_channels)):
             offsets = [Coordinate.zero()] * len(use_channels)
         if self._simulator:
@@ -759,7 +762,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
                             blow_out_air_volume=current_dis_blow_out_air_volume,
                             spread=spread,
                         )
-                        if delays is not None:
+                        if delays is not None and len(delays) > 1:
                             await self.custom_delay(seconds=delays[1])
                         await self.touch_tip(current_targets)
                         await self.discard_tips()        
@@ -833,17 +836,19 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
                             spread=spread,
                         )
 
-                        if delays is not None:
+                        if delays is not None and len(delays) > 1:
                             await self.custom_delay(seconds=delays[1])
-                        await self.mix(
-                            targets=[targets[_]],
-                            mix_time=mix_time,
-                            mix_vol=mix_vol,
-                            offsets=offsets if offsets else None,
-                            height_to_bottom=mix_liquid_height if mix_liquid_height else None,
-                            mix_rate=mix_rate if mix_rate else None,
-                        )
-                        if delays is not None:
+                        # 只有在 mix_time 有效时才调用 mix
+                        if mix_time is not None and mix_time > 0:
+                            await self.mix(
+                                targets=[targets[_]],
+                                mix_time=mix_time,
+                                mix_vol=mix_vol,
+                                offsets=offsets if offsets else None,
+                                height_to_bottom=mix_liquid_height if mix_liquid_height else None,
+                                mix_rate=mix_rate if mix_rate else None,
+                            )
+                        if delays is not None and len(delays) > 1:
                             await self.custom_delay(seconds=delays[1])
                         await self.touch_tip(targets[_])
                         await self.discard_tips()
@@ -893,18 +898,20 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
                             blow_out_air_volume=current_dis_blow_out_air_volume,
                             spread=spread,
                         )
-                        if delays is not None:
+                        if delays is not None and len(delays) > 1:
                             await self.custom_delay(seconds=delays[1])
 
-                        await self.mix(
-                            targets=current_targets,
-                            mix_time=mix_time,
-                            mix_vol=mix_vol,
-                            offsets=offsets if offsets else None,
-                            height_to_bottom=mix_liquid_height if mix_liquid_height else None,
-                            mix_rate=mix_rate if mix_rate else None,
-                        )
-                        if delays is not None:
+                        # 只有在 mix_time 有效时才调用 mix
+                        if mix_time is not None and mix_time > 0:
+                            await self.mix(
+                                targets=current_targets,
+                                mix_time=mix_time,
+                                mix_vol=mix_vol,
+                                offsets=offsets if offsets else None,
+                                height_to_bottom=mix_liquid_height if mix_liquid_height else None,
+                                mix_rate=mix_rate if mix_rate else None,
+                            )
+                        if delays is not None and len(delays) > 1:
                             await self.custom_delay(seconds=delays[1])
                         await self.touch_tip(current_targets)
                         await self.discard_tips()
@@ -942,60 +949,146 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
         delays: Optional[List[int]] = None,
         none_keys: List[str] = [],
     ):
-        """Transfer liquid from each *source* well/plate to the corresponding *target*.
+        """Transfer liquid with automatic mode detection.
+
+        Supports three transfer modes:
+        1. One-to-many (1 source -> N targets): Distribute from one source to multiple targets
+        2. One-to-one (N sources -> N targets): Standard transfer, each source to corresponding target
+        3. Many-to-one (N sources -> 1 target): Combine multiple sources into one target
 
         Parameters
         ----------
         asp_vols, dis_vols
-            Single volume (µL) or list matching the number of transfers.
+            Single volume (µL) or list. Automatically expanded based on transfer mode.
         sources, targets
-            Same‑length sequences of containers (wells or plates). In 96‑well mode
-            each must contain exactly one plate.
+            Containers (wells or plates). Length determines transfer mode:
+            - len(sources) == 1, len(targets) > 1: One-to-many mode
+            - len(sources) == len(targets): One-to-one mode
+            - len(sources) > 1, len(targets) == 1: Many-to-one mode
         tip_racks
             One or more TipRacks providing fresh tips.
         is_96_well
             Set *True* to use the 96‑channel head.
         """
-
-
+        
+        # 确保 use_channels 有默认值
+        if use_channels is None:
+            use_channels = [0] if self.channel_num >= 1 else list(range(self.channel_num))
+        
         if is_96_well:
             pass  # This mode is not verified.
         else:
-            if len(asp_vols) != len(targets):
-                raise ValueError(f"Length of `asp_vols` {len(asp_vols)} must match `targets` {len(targets)}.")
+            # 转换体积参数为列表
+            if isinstance(asp_vols, (int, float)):
+                asp_vols = [float(asp_vols)]
+            else:
+                asp_vols = [float(v) for v in asp_vols]
+            
+            if isinstance(dis_vols, (int, float)):
+                dis_vols = [float(dis_vols)]
+            else:
+                dis_vols = [float(v) for v in dis_vols]
+            
+            # 识别传输模式
+            num_sources = len(sources)
+            num_targets = len(targets)
+            
+            if num_sources == 1 and num_targets > 1:
+                # 模式1: 一对多 (1 source -> N targets)
+                await self._transfer_one_to_many(
+                    sources[0], targets, tip_racks, use_channels,
+                    asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
+                    offsets, touch_tip, liquid_height, blow_out_air_volume,
+                    spread, mix_stage, mix_times, mix_vol, mix_rate,
+                    mix_liquid_height, delays
+                )
+            elif num_sources > 1 and num_targets == 1:
+                # 模式2: 多对一 (N sources -> 1 target)
+                await self._transfer_many_to_one(
+                    sources, targets[0], tip_racks, use_channels,
+                    asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
+                    offsets, touch_tip, liquid_height, blow_out_air_volume,
+                    spread, mix_stage, mix_times, mix_vol, mix_rate,
+                    mix_liquid_height, delays
+                )
+            elif num_sources == num_targets:
+                # 模式3: 一对一 (N sources -> N targets) - 原有逻辑
+                await self._transfer_one_to_one(
+                    sources, targets, tip_racks, use_channels,
+                    asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
+                    offsets, touch_tip, liquid_height, blow_out_air_volume,
+                    spread, mix_stage, mix_times, mix_vol, mix_rate,
+                    mix_liquid_height, delays
+                )
+            else:
+                raise ValueError(
+                    f"Unsupported transfer mode: {num_sources} sources -> {num_targets} targets. "
+                    "Supported modes: 1->N, N->1, or N->N."
+                )
 
-            # 首先应该对任务分组，然后每次1个/8个进行操作处理
-            if len(use_channels) == 1:
-                for _ in range(len(targets)):
-                    tip = []
-                    for ___ in range(len(use_channels)):
-                        tip.extend(next(self.current_tip))
-                    await self.pick_up_tips(tip)
+    async def _transfer_one_to_one(
+        self,
+        sources: Sequence[Container],
+        targets: Sequence[Container],
+        tip_racks: Sequence[TipRack],
+        use_channels: List[int],
+        asp_vols: List[float],
+        dis_vols: List[float],
+        asp_flow_rates: Optional[List[Optional[float]]],
+        dis_flow_rates: Optional[List[Optional[float]]],
+        offsets: Optional[List[Coordinate]],
+        touch_tip: bool,
+        liquid_height: Optional[List[Optional[float]]],
+        blow_out_air_volume: Optional[List[Optional[float]]],
+        spread: Literal["wide", "tight", "custom"],
+        mix_stage: Optional[Literal["none", "before", "after", "both"]],
+        mix_times: Optional[int],
+        mix_vol: Optional[int],
+        mix_rate: Optional[int],
+        mix_liquid_height: Optional[float],
+        delays: Optional[List[int]],
+    ):
+        """一对一传输模式：N sources -> N targets"""
+        # 验证参数长度
+        if len(asp_vols) != len(targets):
+            raise ValueError(f"Length of `asp_vols` {len(asp_vols)} must match `targets` {len(targets)}.")
+        if len(dis_vols) != len(targets):
+            raise ValueError(f"Length of `dis_vols` {len(dis_vols)} must match `targets` {len(targets)}.")
+        if len(sources) != len(targets):
+            raise ValueError(f"Length of `sources` {len(sources)} must match `targets` {len(targets)}.")
 
-                    await self.aspirate(
-                        resources=[sources[_]],
-                        vols=[asp_vols[_]],
-                        use_channels=use_channels,
-                        flow_rates=[asp_flow_rates[0]] if asp_flow_rates else None,
-                        offsets=[offsets[0]] if offsets else None,
-                        liquid_height=[liquid_height[0]] if liquid_height else None,
-                        blow_out_air_volume=[blow_out_air_volume[0]] if blow_out_air_volume else None,
-                        spread=spread,
-                    )
-                    if delays is not None:
-                        await self.custom_delay(seconds=delays[0])
-                    await self.dispense(
-                        resources=[targets[_]],
-                        vols=[dis_vols[_]],
-                        use_channels=use_channels,
-                        flow_rates=[dis_flow_rates[1]] if dis_flow_rates else None,
-                        offsets=[offsets[1]] if offsets else None,
-                        blow_out_air_volume=[blow_out_air_volume[1]] if blow_out_air_volume else None,
-                        liquid_height=[liquid_height[1]] if liquid_height else None,
-                        spread=spread,
-                    )
-                    if delays is not None:
-                        await self.custom_delay(seconds=delays[1])
+        if len(use_channels) == 1:
+            for _ in range(len(targets)):
+                tip = []
+                for ___ in range(len(use_channels)):
+                    tip.extend(next(self.current_tip))
+                await self.pick_up_tips(tip)
+
+                await self.aspirate(
+                    resources=[sources[_]],
+                    vols=[asp_vols[_]],
+                    use_channels=use_channels,
+                    flow_rates=[asp_flow_rates[_]] if asp_flow_rates and len(asp_flow_rates) > _ else None,
+                    offsets=[offsets[_]] if offsets and len(offsets) > _ else None,
+                    liquid_height=[liquid_height[_]] if liquid_height and len(liquid_height) > _ else None,
+                    blow_out_air_volume=[blow_out_air_volume[_]] if blow_out_air_volume and len(blow_out_air_volume) > _ else None,
+                    spread=spread,
+                )
+                if delays is not None:
+                    await self.custom_delay(seconds=delays[0])
+                await self.dispense(
+                    resources=[targets[_]],
+                    vols=[dis_vols[_]],
+                    use_channels=use_channels,
+                    flow_rates=[dis_flow_rates[_]] if dis_flow_rates and len(dis_flow_rates) > _ else None,
+                    offsets=[offsets[_]] if offsets and len(offsets) > _ else None,
+                    blow_out_air_volume=[blow_out_air_volume[_]] if blow_out_air_volume and len(blow_out_air_volume) > _ else None,
+                    liquid_height=[liquid_height[_]] if liquid_height and len(liquid_height) > _ else None,
+                    spread=spread,
+                )
+                if delays is not None and len(delays) > 1:
+                    await self.custom_delay(seconds=delays[1])
+                if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
                     await self.mix(
                         targets=[targets[_]],
                         mix_time=mix_times,
@@ -1004,63 +1097,60 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
                         height_to_bottom=mix_liquid_height if mix_liquid_height else None,
                         mix_rate=mix_rate if mix_rate else None,
                     )
-                    if delays is not None:
-                        await self.custom_delay(seconds=delays[1])
-                    await self.touch_tip(targets[_])
-                    await self.discard_tips()
+                if delays is not None and len(delays) > 1:
+                    await self.custom_delay(seconds=delays[1])
+                await self.touch_tip(targets[_])
+                await self.discard_tips(use_channels=use_channels)
 
-            elif len(use_channels) == 8:
-                # 对于8个的情况，需要判断此时任务是不是能被8通道移液站来成功处理
-                if len(targets) % 8 != 0:
-                    raise ValueError(f"Length of `targets` {len(targets)} must be a multiple of 8 for 8-channel mode.")
+        elif len(use_channels) == 8:
+            if len(targets) % 8 != 0:
+                raise ValueError(f"Length of `targets` {len(targets)} must be a multiple of 8 for 8-channel mode.")
 
-                # 8个8个来取任务序列
+            for i in range(0, len(targets), 8):
+                tip = []
+                for _ in range(len(use_channels)):
+                    tip.extend(next(self.current_tip))
+                await self.pick_up_tips(tip)
+                current_targets = targets[i:i + 8]
+                current_reagent_sources = sources[i:i + 8]
+                current_asp_vols = asp_vols[i:i + 8]
+                current_dis_vols = dis_vols[i:i + 8]
+                current_asp_flow_rates = asp_flow_rates[i:i + 8] if asp_flow_rates else None
+                current_asp_offset = offsets[i:i + 8] if offsets else [None] * 8
+                current_dis_offset = offsets[i:i + 8] if offsets else [None] * 8
+                current_asp_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
+                current_dis_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
+                current_asp_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
+                current_dis_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
+                current_dis_flow_rates = dis_flow_rates[i:i + 8] if dis_flow_rates else None
 
-                for i in range(0, len(targets), 8):
-                    # 取出8个任务
-                    tip = []
-                    for _ in range(len(use_channels)):
-                        tip.extend(next(self.current_tip))
-                    await self.pick_up_tips(tip)
-                    current_targets = targets[i:i + 8]
-                    current_reagent_sources = sources[i:i + 8]
-                    current_asp_vols = asp_vols[i:i + 8]
-                    current_dis_vols = dis_vols[i:i + 8]
-                    current_asp_flow_rates = asp_flow_rates[i:i + 8]
-                    current_asp_offset = offsets[i:i + 8] if offsets else [None] * 8
-                    current_dis_offset = offsets[-i*8-8:len(offsets)-i*8] if offsets else [None] * 8
-                    current_asp_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
-                    current_dis_liquid_height = liquid_height[-i*8-8:len(liquid_height)-i*8] if liquid_height else [None] * 8
-                    current_asp_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
-                    current_dis_blow_out_air_volume = blow_out_air_volume[-i*8-8:len(blow_out_air_volume)-i*8] if blow_out_air_volume else [None] * 8
-                    current_dis_flow_rates = dis_flow_rates[i:i + 8] if dis_flow_rates else [None] * 8
+                await self.aspirate(
+                    resources=current_reagent_sources,
+                    vols=current_asp_vols,
+                    use_channels=use_channels,
+                    flow_rates=current_asp_flow_rates,
+                    offsets=current_asp_offset,
+                    blow_out_air_volume=current_asp_blow_out_air_volume,
+                    liquid_height=current_asp_liquid_height,
+                    spread=spread,
+                )
 
-                    await self.aspirate(
-                        resources=current_reagent_sources,
-                        vols=current_asp_vols,
-                        use_channels=use_channels,
-                        flow_rates=current_asp_flow_rates,
-                        offsets=current_asp_offset,
-                        blow_out_air_volume=current_asp_blow_out_air_volume,
-                        liquid_height=current_asp_liquid_height,
-                        spread=spread,
-                    )
-
-                    if delays is not None:
-                        await self.custom_delay(seconds=delays[0])
-                    await self.dispense(
-                        resources=current_targets,
-                        vols=current_dis_vols,
-                        use_channels=use_channels,
-                        flow_rates=current_dis_flow_rates,
-                        offsets=current_dis_offset,
-                        blow_out_air_volume=current_dis_blow_out_air_volume,
-                        liquid_height=current_dis_liquid_height,
-                        spread=spread,
-                    )
-                    if delays is not None:
-                        await self.custom_delay(seconds=delays[1])
+                if delays is not None:
+                    await self.custom_delay(seconds=delays[0])
+                await self.dispense(
+                    resources=current_targets,
+                    vols=current_dis_vols,
+                    use_channels=use_channels,
+                    flow_rates=current_dis_flow_rates,
+                    offsets=current_dis_offset,
+                    blow_out_air_volume=current_dis_blow_out_air_volume,
+                    liquid_height=current_dis_liquid_height,
+                    spread=spread,
+                )
+                if delays is not None and len(delays) > 1:
+                    await self.custom_delay(seconds=delays[1])
 
+                if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
                     await self.mix(
                         targets=current_targets,
                         mix_time=mix_times,
@@ -1069,10 +1159,363 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
                         height_to_bottom=mix_liquid_height if mix_liquid_height else None,
                         mix_rate=mix_rate if mix_rate else None,
                     )
-                    if delays is not None:
-                        await self.custom_delay(seconds=delays[1])
+                if delays is not None and len(delays) > 1:
+                    await self.custom_delay(seconds=delays[1])
+                await self.touch_tip(current_targets)
+                await self.discard_tips([0,1,2,3,4,5,6,7])
+
+    async def _transfer_one_to_many(
+        self,
+        source: Container,
+        targets: Sequence[Container],
+        tip_racks: Sequence[TipRack],
+        use_channels: List[int],
+        asp_vols: List[float],
+        dis_vols: List[float],
+        asp_flow_rates: Optional[List[Optional[float]]],
+        dis_flow_rates: Optional[List[Optional[float]]],
+        offsets: Optional[List[Coordinate]],
+        touch_tip: bool,
+        liquid_height: Optional[List[Optional[float]]],
+        blow_out_air_volume: Optional[List[Optional[float]]],
+        spread: Literal["wide", "tight", "custom"],
+        mix_stage: Optional[Literal["none", "before", "after", "both"]],
+        mix_times: Optional[int],
+        mix_vol: Optional[int],
+        mix_rate: Optional[int],
+        mix_liquid_height: Optional[float],
+        delays: Optional[List[int]],
+    ):
+        """一对多传输模式：1 source -> N targets"""
+        # 验证和扩展体积参数
+        if len(asp_vols) == 1:
+            # 如果只提供一个吸液体积，计算总吸液体积（所有分液体积之和）
+            total_asp_vol = sum(dis_vols)
+            asp_vol = asp_vols[0] if asp_vols[0] >= total_asp_vol else total_asp_vol
+        else:
+            raise ValueError("For one-to-many mode, `asp_vols` should be a single value or list with one element.")
+        
+        if len(dis_vols) != len(targets):
+            raise ValueError(f"Length of `dis_vols` {len(dis_vols)} must match `targets` {len(targets)}.")
+
+        if len(use_channels) == 1:
+            # 单通道模式：一次吸液，多次分液
+            tip = []
+            for _ in range(len(use_channels)):
+                tip.extend(next(self.current_tip))
+            await self.pick_up_tips(tip)
+
+            # 从源容器吸液（总体积）
+            await self.aspirate(
+                resources=[source],
+                vols=[asp_vol],
+                use_channels=use_channels,
+                flow_rates=[asp_flow_rates[0]] if asp_flow_rates and len(asp_flow_rates) > 0 else None,
+                offsets=[offsets[0]] if offsets and len(offsets) > 0 else None,
+                liquid_height=[liquid_height[0]] if liquid_height and len(liquid_height) > 0 else None,
+                blow_out_air_volume=[blow_out_air_volume[0]] if blow_out_air_volume and len(blow_out_air_volume) > 0 else None,
+                spread=spread,
+            )
+            
+            if delays is not None:
+                await self.custom_delay(seconds=delays[0])
+            
+            # 分多次分液到不同的目标容器
+            for idx, target in enumerate(targets):
+                await self.dispense(
+                    resources=[target],
+                    vols=[dis_vols[idx]],
+                    use_channels=use_channels,
+                    flow_rates=[dis_flow_rates[idx]] if dis_flow_rates and len(dis_flow_rates) > idx else None,
+                    offsets=[offsets[idx]] if offsets and len(offsets) > idx else None,
+                    blow_out_air_volume=[blow_out_air_volume[idx]] if blow_out_air_volume and len(blow_out_air_volume) > idx else None,
+                    liquid_height=[liquid_height[idx]] if liquid_height and len(liquid_height) > idx else None,
+                    spread=spread,
+                )
+                if delays is not None and len(delays) > 1:
+                    await self.custom_delay(seconds=delays[1])
+                if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
+                    await self.mix(
+                        targets=[target],
+                        mix_time=mix_times,
+                        mix_vol=mix_vol,
+                        offsets=offsets[idx:idx+1] if offsets else None,
+                        height_to_bottom=mix_liquid_height if mix_liquid_height else None,
+                        mix_rate=mix_rate if mix_rate else None,
+                    )
+                if touch_tip:
+                    await self.touch_tip([target])
+            
+            await self.discard_tips(use_channels=use_channels)
+        
+        elif len(use_channels) == 8:
+            # 8通道模式：需要确保目标数量是8的倍数
+            if len(targets) % 8 != 0:
+                raise ValueError(f"For 8-channel mode, number of targets {len(targets)} must be a multiple of 8.")
+            
+            # 每次处理8个目标
+            for i in range(0, len(targets), 8):
+                tip = []
+                for _ in range(len(use_channels)):
+                    tip.extend(next(self.current_tip))
+                await self.pick_up_tips(tip)
+                
+                current_targets = targets[i:i + 8]
+                current_dis_vols = dis_vols[i:i + 8]
+                
+                # 8个通道都从同一个源容器吸液，每个通道的吸液体积等于对应的分液体积
+                current_asp_flow_rates = asp_flow_rates[0:1] * 8 if asp_flow_rates and len(asp_flow_rates) > 0 else None
+                current_asp_offset = offsets[0:1] * 8 if offsets and len(offsets) > 0 else [None] * 8
+                current_asp_liquid_height = liquid_height[0:1] * 8 if liquid_height and len(liquid_height) > 0 else [None] * 8
+                current_asp_blow_out_air_volume = blow_out_air_volume[0:1] * 8 if blow_out_air_volume and len(blow_out_air_volume) > 0 else [None] * 8
+                
+                # 从源容器吸液（8个通道都从同一个源，但每个通道的吸液体积不同）
+                await self.aspirate(
+                    resources=[source] * 8,  # 8个通道都从同一个源
+                    vols=current_dis_vols,  # 每个通道的吸液体积等于对应的分液体积
+                    use_channels=use_channels,
+                    flow_rates=current_asp_flow_rates,
+                    offsets=current_asp_offset,
+                    liquid_height=current_asp_liquid_height,
+                    blow_out_air_volume=current_asp_blow_out_air_volume,
+                    spread=spread,
+                )
+                
+                if delays is not None:
+                    await self.custom_delay(seconds=delays[0])
+                
+                # 分液到8个目标
+                current_dis_flow_rates = dis_flow_rates[i:i + 8] if dis_flow_rates else None
+                current_dis_offset = offsets[i:i + 8] if offsets else [None] * 8
+                current_dis_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
+                current_dis_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
+                
+                await self.dispense(
+                    resources=current_targets,
+                    vols=current_dis_vols,
+                    use_channels=use_channels,
+                    flow_rates=current_dis_flow_rates,
+                    offsets=current_dis_offset,
+                    blow_out_air_volume=current_dis_blow_out_air_volume,
+                    liquid_height=current_dis_liquid_height,
+                    spread=spread,
+                )
+                
+                if delays is not None and len(delays) > 1:
+                    await self.custom_delay(seconds=delays[1])
+                
+                if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
+                    await self.mix(
+                        targets=current_targets,
+                        mix_time=mix_times,
+                        mix_vol=mix_vol,
+                        offsets=offsets if offsets else None,
+                        height_to_bottom=mix_liquid_height if mix_liquid_height else None,
+                        mix_rate=mix_rate if mix_rate else None,
+                    )
+                
+                if touch_tip:
                     await self.touch_tip(current_targets)
-                    await self.discard_tips([0,1,2,3,4,5,6,7])
+                
+                await self.discard_tips([0,1,2,3,4,5,6,7])
+
+    async def _transfer_many_to_one(
+        self,
+        sources: Sequence[Container],
+        target: Container,
+        tip_racks: Sequence[TipRack],
+        use_channels: List[int],
+        asp_vols: List[float],
+        dis_vols: List[float],
+        asp_flow_rates: Optional[List[Optional[float]]],
+        dis_flow_rates: Optional[List[Optional[float]]],
+        offsets: Optional[List[Coordinate]],
+        touch_tip: bool,
+        liquid_height: Optional[List[Optional[float]]],
+        blow_out_air_volume: Optional[List[Optional[float]]],
+        spread: Literal["wide", "tight", "custom"],
+        mix_stage: Optional[Literal["none", "before", "after", "both"]],
+        mix_times: Optional[int],
+        mix_vol: Optional[int],
+        mix_rate: Optional[int],
+        mix_liquid_height: Optional[float],
+        delays: Optional[List[int]],
+    ):
+        """多对一传输模式：N sources -> 1 target（汇总/混合）"""
+        # 验证和扩展体积参数
+        if len(asp_vols) != len(sources):
+            raise ValueError(f"Length of `asp_vols` {len(asp_vols)} must match `sources` {len(sources)}.")
+        
+        # 支持两种模式：
+        # 1. dis_vols 为单个值：所有源汇总，使用总吸液体积或指定分液体积
+        # 2. dis_vols 长度等于 asp_vols：每个源按不同比例分液（按比例混合）
+        if len(dis_vols) == 1:
+            # 模式1：使用单个分液体积
+            total_dis_vol = sum(asp_vols)
+            dis_vol = dis_vols[0] if dis_vols[0] >= total_dis_vol else total_dis_vol
+            use_proportional_mixing = False
+        elif len(dis_vols) == len(asp_vols):
+            # 模式2：按不同比例混合
+            use_proportional_mixing = True
+        else:
+            raise ValueError(
+                f"For many-to-one mode, `dis_vols` should be a single value or list with length {len(asp_vols)} "
+                f"(matching `asp_vols`). Got length {len(dis_vols)}."
+            )
+
+        if len(use_channels) == 1:
+            # 单通道模式：多次吸液，一次分液
+            # 先混合前（如果需要）
+            if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
+                # 注意：在吸液前混合源容器通常不常见，这里跳过
+                pass
+            
+            # 从每个源容器吸液并分液到目标容器
+            for idx, source in enumerate(sources):
+                tip = []
+                for _ in range(len(use_channels)):
+                    tip.extend(next(self.current_tip))
+                await self.pick_up_tips(tip)
+
+                await self.aspirate(
+                    resources=[source],
+                    vols=[asp_vols[idx]],
+                    use_channels=use_channels,
+                    flow_rates=[asp_flow_rates[idx]] if asp_flow_rates and len(asp_flow_rates) > idx else None,
+                    offsets=[offsets[idx]] if offsets and len(offsets) > idx else None,
+                    liquid_height=[liquid_height[idx]] if liquid_height and len(liquid_height) > idx else None,
+                    blow_out_air_volume=[blow_out_air_volume[idx]] if blow_out_air_volume and len(blow_out_air_volume) > idx else None,
+                    spread=spread,
+                )
+                
+                if delays is not None:
+                    await self.custom_delay(seconds=delays[0])
+                
+                # 分液到目标容器
+                if use_proportional_mixing:
+                    # 按不同比例混合：使用对应的 dis_vols
+                    dis_vol = dis_vols[idx]
+                    dis_flow_rate = dis_flow_rates[idx] if dis_flow_rates and len(dis_flow_rates) > idx else None
+                    dis_offset = offsets[idx] if offsets and len(offsets) > idx else None
+                    dis_liquid_height = liquid_height[idx] if liquid_height and len(liquid_height) > idx else None
+                    dis_blow_out = blow_out_air_volume[idx] if blow_out_air_volume and len(blow_out_air_volume) > idx else None
+                else:
+                    # 标准模式：分液体积等于吸液体积
+                    dis_vol = asp_vols[idx]
+                    dis_flow_rate = dis_flow_rates[0] if dis_flow_rates and len(dis_flow_rates) > 0 else None
+                    dis_offset = offsets[0] if offsets and len(offsets) > 0 else None
+                    dis_liquid_height = liquid_height[0] if liquid_height and len(liquid_height) > 0 else None
+                    dis_blow_out = blow_out_air_volume[0] if blow_out_air_volume and len(blow_out_air_volume) > 0 else None
+                
+                await self.dispense(
+                    resources=[target],
+                    vols=[dis_vol],
+                    use_channels=use_channels,
+                    flow_rates=[dis_flow_rate] if dis_flow_rate is not None else None,
+                    offsets=[dis_offset] if dis_offset is not None else None,
+                    blow_out_air_volume=[dis_blow_out] if dis_blow_out is not None else None,
+                    liquid_height=[dis_liquid_height] if dis_liquid_height is not None else None,
+                    spread=spread,
+                )
+                
+                if delays is not None and len(delays) > 1:
+                    await self.custom_delay(seconds=delays[1])
+                
+                await self.discard_tips(use_channels=use_channels)
+            
+            # 最后在目标容器中混合（如果需要）
+            if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
+                await self.mix(
+                    targets=[target],
+                    mix_time=mix_times,
+                    mix_vol=mix_vol,
+                    offsets=offsets[0:1] if offsets else None,
+                    height_to_bottom=mix_liquid_height if mix_liquid_height else None,
+                    mix_rate=mix_rate if mix_rate else None,
+                )
+            
+            if touch_tip:
+                await self.touch_tip([target])
+        
+        elif len(use_channels) == 8:
+            # 8通道模式：需要确保源数量是8的倍数
+            if len(sources) % 8 != 0:
+                raise ValueError(f"For 8-channel mode, number of sources {len(sources)} must be a multiple of 8.")
+            
+            # 每次处理8个源
+            for i in range(0, len(sources), 8):
+                tip = []
+                for _ in range(len(use_channels)):
+                    tip.extend(next(self.current_tip))
+                await self.pick_up_tips(tip)
+                
+                current_sources = sources[i:i + 8]
+                current_asp_vols = asp_vols[i:i + 8]
+                current_asp_flow_rates = asp_flow_rates[i:i + 8] if asp_flow_rates else None
+                current_asp_offset = offsets[i:i + 8] if offsets else [None] * 8
+                current_asp_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
+                current_asp_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
+                
+                # 从8个源容器吸液
+                await self.aspirate(
+                    resources=current_sources,
+                    vols=current_asp_vols,
+                    use_channels=use_channels,
+                    flow_rates=current_asp_flow_rates,
+                    offsets=current_asp_offset,
+                    blow_out_air_volume=current_asp_blow_out_air_volume,
+                    liquid_height=current_asp_liquid_height,
+                    spread=spread,
+                )
+                
+                if delays is not None:
+                    await self.custom_delay(seconds=delays[0])
+                
+                # 分液到目标容器（每个通道分液到同一个目标）
+                if use_proportional_mixing:
+                    # 按比例混合：使用对应的 dis_vols
+                    current_dis_vols = dis_vols[i:i + 8]
+                    current_dis_flow_rates = dis_flow_rates[i:i + 8] if dis_flow_rates else None
+                    current_dis_offset = offsets[i:i + 8] if offsets else [None] * 8
+                    current_dis_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
+                    current_dis_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
+                else:
+                    # 标准模式：每个通道分液体积等于其吸液体积
+                    current_dis_vols = current_asp_vols
+                    current_dis_flow_rates = dis_flow_rates[0:1] * 8 if dis_flow_rates else None
+                    current_dis_offset = offsets[0:1] * 8 if offsets else [None] * 8
+                    current_dis_liquid_height = liquid_height[0:1] * 8 if liquid_height else [None] * 8
+                    current_dis_blow_out_air_volume = blow_out_air_volume[0:1] * 8 if blow_out_air_volume else [None] * 8
+                
+                await self.dispense(
+                    resources=[target] * 8,  # 8个通道都分到同一个目标
+                    vols=current_dis_vols,
+                    use_channels=use_channels,
+                    flow_rates=current_dis_flow_rates,
+                    offsets=current_dis_offset,
+                    blow_out_air_volume=current_dis_blow_out_air_volume,
+                    liquid_height=current_dis_liquid_height,
+                    spread=spread,
+                )
+                
+                if delays is not None and len(delays) > 1:
+                    await self.custom_delay(seconds=delays[1])
+                
+                await self.discard_tips([0,1,2,3,4,5,6,7])
+            
+            # 最后在目标容器中混合（如果需要）
+            if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
+                await self.mix(
+                    targets=[target],
+                    mix_time=mix_times,
+                    mix_vol=mix_vol,
+                    offsets=offsets[0:1] if offsets else None,
+                    height_to_bottom=mix_liquid_height if mix_liquid_height else None,
+                    mix_rate=mix_rate if mix_rate else None,
+                )
+            
+            if touch_tip:
+                await self.touch_tip([target])
 
     # except Exception as e:
     #     traceback.print_exc()

unilabos/devices/virtual/virtual_multiway_valve.py

@@ -7,7 +7,7 @@ class VirtualMultiwayValve:
     """
     虚拟九通阀门 - 0号位连接transfer pump，1-8号位连接其他设备 🔄
     """
-    def __init__(self, port: str = "VIRTUAL", positions: int = 8):
+    def __init__(self, port: str = "VIRTUAL", positions: int = 8, **kwargs):
         self.port = port
         self.max_positions = positions  # 1-8号位
         self.total_positions = positions + 1  # 0-8号位，共9个位置

unilabos/devices/workstation/workstation_base.py

@@ -147,7 +147,7 @@ class WorkstationBase(ABC):
 
     def __init__(
         self,
-        deck: Deck,
+        deck: Optional[Deck],
         *args,
         **kwargs,  # 必须有kwargs
     ):
@@ -349,5 +349,5 @@ class WorkstationBase(ABC):
 
 
 class ProtocolNode(WorkstationBase):
-    def __init__(self, deck: Optional[PLRResource], *args, **kwargs):
+    def __init__(self, protocol_type: List[str], deck: Optional[PLRResource], *args, **kwargs):
         super().__init__(deck, *args, **kwargs)

unilabos/registry/devices/work_station.yaml

@@ -6036,7 +6036,12 @@ workstation:
       properties:
         deck:
           type: string
+        protocol_type:
+          items:
+            type: string
+          type: array
       required:
+      - protocol_type
       - deck
       type: object
     data:

unilabos/registry/resources/organic/container.yaml

@@ -2,7 +2,7 @@ container:
   category:
   - container
   class:
-    module: unilabos.resources.container:RegularContainer
+    module: unilabos.resources.container:get_regular_container
     type: pylabrobot
   description: regular organic container
   handles:

unilabos/resources/container.py

@@ -22,6 +22,13 @@ class RegularContainer(Container):
 
     def load_state(self, state: Dict[str, Any]):
         self.state = state
+
+
+def get_regular_container(name="container"):
+    r = RegularContainer(name=name)
+    r.category = "container"
+    return RegularContainer(name=name)
+
 #
 # class RegularContainer(object):
 #     # 第一个参数必须是id传入

unilabos/ros/nodes/base_device_node.py

@@ -1144,7 +1144,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                             queried_resources = []
                             for resource_data in resource_inputs:
                                 plr_resource = await self.get_resource_with_dir(
-                                    resource_ids=resource_data["id"], with_children=True
+                                    resource_id=resource_data["id"], with_children=True
                                 )
                                 queried_resources.append(plr_resource)
 

unilabos/utils/log.py

@@ -124,11 +124,14 @@ class ColoredFormatter(logging.Formatter):
     def _format_basic(self, record):
         """基本格式化，不包含颜色"""
         datetime_str = datetime.fromtimestamp(record.created).strftime("%y-%m-%d [%H:%M:%S,%f")[:-3] + "]"
-        filename = os.path.basename(record.filename).rsplit(".", 1)[0]  # 提取文件名（不含路径和扩展名）
+        filename = record.filename.replace(".py", "").split("\\")[-1]  # 提取文件名（不含路径和扩展名）
+        if "/" in filename:
+            filename = filename.split("/")[-1]
         module_path = f"{record.name}.{filename}"
         func_line = f"{record.funcName}:{record.lineno}"
+        right_info = f" [{func_line}] [{module_path}]"
 
-        formatted_message = f"{datetime_str} [{record.levelname}] [{module_path}] [{func_line}]: {record.getMessage()}"
+        formatted_message = f"{datetime_str} [{record.levelname}] {record.getMessage()}{right_info}"
 
         if record.exc_info:
             exc_text = self.formatException(record.exc_info)
@@ -150,7 +153,7 @@ class ColoredFormatter(logging.Formatter):
 
 
 # 配置日志处理器
-def configure_logger(loglevel=None):
+def configure_logger(loglevel=None, working_dir=None):
     """配置日志记录器
 
     Args:
@@ -191,9 +194,30 @@ def configure_logger(loglevel=None):
 
     # 添加处理器到根日志记录器
     root_logger.addHandler(console_handler)
+
+    # 如果指定了工作目录，添加文件处理器
+    if working_dir is not None:
+        logs_dir = os.path.join(working_dir, "logs")
+        os.makedirs(logs_dir, exist_ok=True)
+
+        # 生成日志文件名：日期 时间.log
+        log_filename = datetime.now().strftime("%Y-%m-%d %H-%M-%S") + ".log"
+        log_filepath = os.path.join(logs_dir, log_filename)
+
+        # 创建文件处理器
+        file_handler = logging.FileHandler(log_filepath, encoding="utf-8")
+        file_handler.setLevel(root_logger.level)
+
+        # 使用不带颜色的格式化器
+        file_formatter = ColoredFormatter(use_colors=False)
+        file_handler.setFormatter(file_formatter)
+
+        root_logger.addHandler(file_handler)
+
     logging.getLogger("asyncio").setLevel(logging.INFO)
     logging.getLogger("urllib3").setLevel(logging.INFO)
 
+
 # 配置日志系统
 configure_logger()