Files
Uni-Lab-OS/unilabos/resources/warehouse.py
Xuwznln 4c8022ee95 Workstation yb merge dev ready 260113 (#216)
* feat(bioyond): 添加计算实验设计功能,支持化合物配比和滴定比例参数

* feat(bioyond): 添加测量小瓶功能,支持基本参数配置

* feat(bioyond): 添加测量小瓶配置,支持新设备参数

* feat(bioyond): 更新仓库布局和尺寸,支持竖向排列的测量小瓶和试剂存放堆栈

* feat(bioyond): 优化任务创建流程,确保无论成功与否都清理任务队列以避免重复累积

* feat(bioyond): 添加设置反应器温度功能,支持温度范围和异常处理

* feat(bioyond): 调整反应器位置配置,统一坐标格式

* feat(bioyond): 添加调度器启动功能,支持任务队列执行并处理异常

* feat(bioyond): 优化调度器启动功能,添加异常处理并更新相关配置

* feat(opcua): 增强节点ID解析兼容性和数据类型处理

改进节点ID解析逻辑以支持多种格式,包括字符串和数字标识符
添加数据类型转换处理,确保写入值时类型匹配
优化错误提示信息,便于调试节点连接问题

* feat(registry): 新增后处理站的设备配置文件

添加后处理站的YAML配置文件,包含动作映射、状态类型和设备描述

* 添加调度器启动功能,合并物料参数配置,优化物料参数处理逻辑

* 添加从 Bioyond 系统自动同步工作流序列的功能,并更新相关配置

* fix:兼容 BioyondReactionStation 中 workflow_sequence 被重写为 property

* fix:同步工作流序列

* feat: remove commented workflow synchronization from `reaction_station.py`.

* 添加时间约束功能及相关配置

* fix:自动更新物料缓存功能,添加物料时更新缓存并在删除时移除缓存项

* fix:在添加物料时处理字符串和字典返回值,确保正确更新缓存

* fix:更新奔曜错误处理报送为物料变更报送,调整日志记录和响应消息

* feat:添加实验报告简化功能,去除冗余信息并保留关键信息

* feat: 添加任务状态事件发布功能,监控并报告任务运行、超时、完成和错误状态

* fix: 修复添加物料时数据格式错误

* Refactor bioyond_dispensing_station and reaction_station_bioyond YAML configurations

- Removed redundant action value mappings from bioyond_dispensing_station.
- Updated goal properties in bioyond_dispensing_station to use enums for target_stack and other parameters.
- Changed data types for end_point and start_point in reaction_station_bioyond to use string enums (Start, End).
- Simplified descriptions and updated measurement units from μL to mL where applicable.
- Removed unused commands from reaction_station_bioyond to streamline the configuration.

* fix:Change the material unit from μL to mL

* fix:refresh_material_cache

* feat: 动态获取工作流步骤ID,优化工作流配置

* feat: 添加清空服务端所有非核心工作流功能

* fix:修复Bottle类的序列化和反序列化方法

* feat:增强材料缓存更新逻辑,支持处理返回数据中的详细信息

* Add debug log

* feat(workstation): update bioyond config migration and coin cell material search logic

- Migrate bioyond_cell config to JSON structure and remove global variable dependencies
- Implement material search confirmation dialog auto-handling
- Add documentation: 20260113_物料搜寻确认弹窗自动处理功能.md and 20260113_配置迁移修改总结.md

* Refactor module paths for Bioyond devices in YAML configuration files

- Updated the module path for BioyondDispensingStation in bioyond_dispensing_station.yaml to reflect the new directory structure.
- Updated the module path for BioyondReactionStation and BioyondReactor in reaction_station_bioyond.yaml to align with the revised organization of the codebase.

* fix: WareHouse 的不可哈希类型错误,优化父节点去重逻辑

* refactor: Move config from module to instance initialization

* fix: 修正 reaction_station 目录名拼写错误

* feat: Integrate material search logic and cleanup deprecated files

- Update coin_cell_assembly.py with material search dialog handling
- Update YB_warehouses.py with latest warehouse configurations
- Remove outdated documentation and test data files

* Refactor: Use instance attributes for action names and workflow step IDs

* refactor: Split tipbox storage into left and right warehouses

* refactor: Merge tipbox storage left and right into single warehouse

---------

Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>
Co-authored-by: Andy6M <xieqiming1132@qq.com>
2026-01-17 15:44:18 +08:00

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from typing import Dict, Optional, List, Union
from pylabrobot.resources import Coordinate
from pylabrobot.resources.carrier import ResourceHolder, create_homogeneous_resources
from unilabos.resources.itemized_carrier import ItemizedCarrier, ResourcePLR
LETTERS = "ABCDEFGHIJKLMNOPQRSTUVWXYZ"
def warehouse_factory(
name: str,
num_items_x: int = 1,
num_items_y: int = 4,
num_items_z: int = 4,
dx: float = 137.0,
dy: float = 96.0,
dz: float = 120.0,
item_dx: float = 10.0,
item_dy: float = 10.0,
item_dz: float = 10.0,
resource_size_x: float = 127.0,
resource_size_y: float = 86.0,
resource_size_z: float = 25.0,
removed_positions: Optional[List[int]] = None,
empty: bool = False,
category: str = "warehouse",
model: Optional[str] = None,
col_offset: int = 0, # 列起始偏移量用于生成A05-D08等命名
row_offset: int = 0, # 行起始偏移量用于生成F01-J03等命名
layout: str = "col-major", # 新增:排序方式,"col-major"=列优先,"row-major"=行优先
):
# 创建位置坐标
locations = []
for layer in range(num_items_z): # 层
for row in range(num_items_y): # 行
for col in range(num_items_x): # 列
# 计算位置
x = dx + col * item_dx
# 根据 layout 决定 y 坐标计算
if layout == "row-major":
# 行优先row=0(A行) 应该显示在上方,需要较小的 y 值
y = dy + row * item_dy
elif layout == "vertical-col-major":
# 竖向warehouse: row=0 对应顶部y小row=n-1 对应底部y大
# 但标签 01 应该在底部,所以使用反向映射
y = dy + (num_items_y - row - 1) * item_dy
else:
# 列优先保持原逻辑row=0 对应较大的 y
y = dy + (num_items_y - row - 1) * item_dy
z = dz + (num_items_z - layer - 1) * item_dz
locations.append(Coordinate(x, y, z))
if removed_positions:
locations = [loc for i, loc in enumerate(locations) if i not in removed_positions]
_sites = create_homogeneous_resources(
klass=ResourceHolder,
locations=locations,
resource_size_x=resource_size_x,
resource_size_y=resource_size_y,
resource_size_z=resource_size_z,
name_prefix=name,
)
len_x, len_y = (num_items_x, num_items_y) if num_items_z == 1 else (num_items_y, num_items_z) if num_items_x == 1 else (num_items_x, num_items_z)
# 根据 layout 参数生成不同的排序方式
# 注意:物理位置的 y 坐标是倒序的 (row=0 时 y 最大,对应前端显示的顶部)
if layout == "row-major":
# 行优先顺序: A01,A02,A03,A04, B01,B02,B03,B04
# locations[0] 对应 row=0, y最大前端顶部→ 应该是 A01
keys = [f"{LETTERS[j + row_offset]}{i + 1 + col_offset:02d}" for j in range(len_y) for i in range(len_x)]
else:
# 列优先顺序: A01,B01,C01,D01, A02,B02,C02,D02
keys = [f"{LETTERS[j + row_offset]}{i + 1 + col_offset:02d}" for i in range(len_x) for j in range(len_y)]
sites = {i: site for i, site in zip(keys, _sites.values())}
return WareHouse(
name=name,
size_x=dx + item_dx * num_items_x,
size_y=dy + item_dy * num_items_y,
size_z=dz + item_dz * num_items_z,
num_items_x = num_items_x,
num_items_y = num_items_y,
num_items_z = num_items_z,
ordering_layout=layout, # 传递排序方式到 ordering_layout
# ordered_items=ordered_items,
# ordering=ordering,
sites=sites,
category=category,
model=model,
)
class WareHouse(ItemizedCarrier):
"""堆栈载体类 - 可容纳16个板位的载体4层x4行x1列"""
def __init__(
self,
name: str,
size_x: float,
size_y: float,
size_z: float,
num_items_x: int,
num_items_y: int,
num_items_z: int,
layout: str = "x-y",
sites: Optional[Dict[Union[int, str], Optional[ResourcePLR]]] = None,
category: str = "warehouse",
model: Optional[str] = None,
ordering_layout: str = "col-major",
**kwargs
):
super().__init__(
name=name,
size_x=size_x,
size_y=size_y,
size_z=size_z,
# ordered_items=ordered_items,
# ordering=ordering,
num_items_x=num_items_x,
num_items_y=num_items_y,
num_items_z=num_items_z,
layout=layout,
sites=sites,
category=category,
model=model,
)
# 保存排序方式供graphio.py的坐标映射使用
# 使用独立属性避免与父类的layout冲突
self.ordering_layout = ordering_layout
def serialize(self) -> dict:
"""序列化时保存 ordering_layout 属性"""
data = super().serialize()
data['ordering_layout'] = self.ordering_layout
return data
def get_site_by_layer_position(self, row: int, col: int, layer: int) -> ResourceHolder:
if not (0 <= layer < 4 and 0 <= row < 4 and 0 <= col < 1):
raise ValueError("无效的位置: layer={}, row={}, col={}".format(layer, row, col))
site_index = layer * 4 + row * 1 + col
return self.sites[site_index]
def add_rack_to_position(self, row: int, col: int, layer: int, rack) -> None:
site = self.get_site_by_layer_position(row, col, layer)
site.assign_child_resource(rack)
def get_rack_at_position(self, row: int, col: int, layer: int):
site = self.get_site_by_layer_position(row, col, layer)
return site.resource