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* add biomek.py demo implementation * 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。 * Test * fix biomek success type * Convert LH action to biomek. * Update biomek.py * 注册表上报handle和schema (param input) * 修复biomek缺少的字段 * delete 's' * Remove warnings * Update biomek.py * Biomek test * Update biomek.py * 新增transfer_biomek的msg * New transfer_biomek * Updated transfer_biomek * 更新transfer_biomek的msg * 更新transfer_biomek的msg * 支持Biomek创建 * new action * fix key name typo * New parameter for biomek to run. * Refine * Update * new actions * new actions * 1 * registry * fix biomek startup add action handles * fix handles not as default entry * biomek_test.py biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json * Update biomek.py * biomek_test.py * fix liquid_handler.biomek handles * host node新增resource add时间统计 create_resource新增handle bump version to 0.9.2 * 修正物料上传时间 改用biomek_test 增加ResultInfoEncoder 支持返回结果上传 * 正确发送return_info结果 * 同步执行状态信息 * 取消raiseValueError提示 * Update biomek_test.py * 0608 DONE * 同步了Biomek.py 现在应可用 * biomek switch back to non-test * temp disable initialize resource * 37-biomek-i5i7 (#40) * add biomek.py demo implementation * 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。 * Test * fix biomek success type * Convert LH action to biomek. * Update biomek.py * 注册表上报handle和schema (param input) * 修复biomek缺少的字段 * delete 's' * Remove warnings * Update biomek.py * Biomek test * Update biomek.py * 新增transfer_biomek的msg * New transfer_biomek * Updated transfer_biomek * 更新transfer_biomek的msg * 更新transfer_biomek的msg * 支持Biomek创建 * new action * fix key name typo * New parameter for biomek to run. * Refine * Update * new actions * new actions * 1 * registry * fix biomek startup add action handles * fix handles not as default entry * biomek_test.py biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json * Update biomek.py * biomek_test.py * fix liquid_handler.biomek handles * host node新增resource add时间统计 create_resource新增handle bump version to 0.9.2 * 修正物料上传时间 改用biomek_test 增加ResultInfoEncoder 支持返回结果上传 * 正确发送return_info结果 * 同步执行状态信息 * 取消raiseValueError提示 * Update biomek_test.py * 0608 DONE * 同步了Biomek.py 现在应可用 * biomek switch back to non-test * temp disable initialize resource * Refine biomek * Refine copy issue * Refine --------- Co-authored-by: Junhan Chang <changjh@pku.edu.cn> Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com> Co-authored-by: qxw138 <qxw@stu.pku.edu.cn> * Device visualization (#39) * Update README and MQTTClient for installation instructions and code improvements * feat: 支持local_config启动 add: 增加对crt path的说明,为传入config.py的相对路径 move: web component * add: registry description * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * feat: node_info_update srv fix: OTDeck cant create * close #12 feat: slave node registry * feat: show machine name fix: host node registry not uploaded * feat: add hplc registry * feat: add hplc registry * fix: hplc status typo * fix: devices/ * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * fix: device.class possible null * fix: HPLC additions with online service * fix: slave mode spin not working * fix: slave mode spin not working * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * feat: 多ProtocolNode 允许子设备ID相同 feat: 上报发现的ActionClient feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报 * feat: 支持env设置config * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * Device visualization (#14) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: missing hostname in devices_names fix: upload_file for model file * fix: missing paho-mqtt package bump version to 0.9.0 * fix startup add ResourceCreateFromOuter.action * fix type hint * update actions * update actions * host node add_resource_from_outer fix cmake list * pass device config to device class * add: bind_parent_ids to resource create action fix: message convert string * fix: host node should not be re_discovered * feat: resource tracker support dict * feat: add more necessary params * feat: fix boolean null in registry action data * feat: add outer resource * 编写mesh添加action * feat: append resource * add action * feat: vis 2d for plr * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate * Device visualization (#22) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * 编写mesh添加action * add action * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: multi channel * fix: aspirate * fix: aspirate * fix: aspirate * fix: aspirate * 提交 * fix: jobadd * fix: jobadd * fix: msg converter * tijiao * add resource creat easy action * identify debug msg * mq client id * 提取lh的joint发布 * unify liquid_handler definition * 修改物料跟随与物料添加逻辑 修改物料跟随与物料添加逻辑 将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写 * Revert "修改物料跟随与物料添加逻辑" This reverts commit498c997ad7. * Reapply "修改物料跟随与物料添加逻辑" This reverts commit3a60d2ae81. * Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization" This reverts commitfa727220af, reversing changes made to498c997ad7. * 修改物料放下时的方法,如果选择 修改物料放下时的方法, 如果选择drop_trash,则删除物料显示 如果选择drop,则让其解除连接 * add biomek.py demo implementation * 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。 * Test * fix biomek success type * Convert LH action to biomek. * Update biomek.py * 注册表上报handle和schema (param input) * 修复biomek缺少的字段 * delete 's' * Remove warnings * Update biomek.py * Biomek test * Update biomek.py * 新增transfer_biomek的msg * New transfer_biomek * Updated transfer_biomek * 更新transfer_biomek的msg * 更新transfer_biomek的msg * 支持Biomek创建 * new action * fix key name typo * New parameter for biomek to run. * Refine * Update * new actions * new actions * 1 * registry * fix biomek startup add action handles * fix handles not as default entry * unilab添加moveit启动 1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活 2,添加pymoveit2的节点,使用json可直接启动 3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动 * biomek_test.py biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json * Update biomek.py * biomek_test.py * fix liquid_handler.biomek handles * 修改物体attach时,多次赋值当前时间导致卡顿问题, * Revert "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit56d45b94f5. * Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit07d9db20c3. * 添加缺少物料:"plate_well_G12", * host node新增resource add时间统计 create_resource新增handle bump version to 0.9.2 * 修正物料上传时间 改用biomek_test 增加ResultInfoEncoder 支持返回结果上传 * 正确发送return_info结果 * 同步执行状态信息 * 取消raiseValueError提示 * Update biomek_test.py * 0608 DONE * 同步了Biomek.py 现在应可用 * biomek switch back to non-test * temp disable initialize resource * add * fix tip resource data * liquid states * change to debug level * Revert "change to debug level" This reverts commit5d9953c3e5. * Reapply "change to debug level" This reverts commit2487bb6ffc. * fix tip resource data * add full device * add moveit yaml * 修复moveit 增加post_init阶段,给予ros_node反向 * remove necessary node * fix moveit action client * remove necessary imports * Update moveit_interface.py * fix handler_key uppercase * json add liquids * fix setup * add * change to "sources" and "targets" for lh * bump version * remove parent's parent link --------- Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: Junhan Chang <changjh@pku.edu.cn> Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com> Co-authored-by: qxw138 <qxw@stu.pku.edu.cn> * Device visualization (#41) * Update README and MQTTClient for installation instructions and code improvements * feat: 支持local_config启动 add: 增加对crt path的说明,为传入config.py的相对路径 move: web component * add: registry description * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * feat: node_info_update srv fix: OTDeck cant create * close #12 feat: slave node registry * feat: show machine name fix: host node registry not uploaded * feat: add hplc registry * feat: add hplc registry * fix: hplc status typo * fix: devices/ * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * fix: device.class possible null * fix: HPLC additions with online service * fix: slave mode spin not working * fix: slave mode spin not working * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * feat: 多ProtocolNode 允许子设备ID相同 feat: 上报发现的ActionClient feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报 * feat: 支持env设置config * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * Device visualization (#14) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: missing hostname in devices_names fix: upload_file for model file * fix: missing paho-mqtt package bump version to 0.9.0 * fix startup add ResourceCreateFromOuter.action * fix type hint * update actions * update actions * host node add_resource_from_outer fix cmake list * pass device config to device class * add: bind_parent_ids to resource create action fix: message convert string * fix: host node should not be re_discovered * feat: resource tracker support dict * feat: add more necessary params * feat: fix boolean null in registry action data * feat: add outer resource * 编写mesh添加action * feat: append resource * add action * feat: vis 2d for plr * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate * Device visualization (#22) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * 编写mesh添加action * add action * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: multi channel * fix: aspirate * fix: aspirate * fix: aspirate * fix: aspirate * 提交 * fix: jobadd * fix: jobadd * fix: msg converter * tijiao * add resource creat easy action * identify debug msg * mq client id * 提取lh的joint发布 * unify liquid_handler definition * 修改物料跟随与物料添加逻辑 修改物料跟随与物料添加逻辑 将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写 * Revert "修改物料跟随与物料添加逻辑" This reverts commit498c997ad7. * Reapply "修改物料跟随与物料添加逻辑" This reverts commit3a60d2ae81. * Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization" This reverts commitfa727220af, reversing changes made to498c997ad7. * 修改物料放下时的方法,如果选择 修改物料放下时的方法, 如果选择drop_trash,则删除物料显示 如果选择drop,则让其解除连接 * add biomek.py demo implementation * 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。 * Test * fix biomek success type * Convert LH action to biomek. * Update biomek.py * 注册表上报handle和schema (param input) * 修复biomek缺少的字段 * delete 's' * Remove warnings * Update biomek.py * Biomek test * Update biomek.py * 新增transfer_biomek的msg * New transfer_biomek * Updated transfer_biomek * 更新transfer_biomek的msg * 更新transfer_biomek的msg * 支持Biomek创建 * new action * fix key name typo * New parameter for biomek to run. * Refine * Update * new actions * new actions * 1 * registry * fix biomek startup add action handles * fix handles not as default entry * unilab添加moveit启动 1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活 2,添加pymoveit2的节点,使用json可直接启动 3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动 * biomek_test.py biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json * Update biomek.py * biomek_test.py * fix liquid_handler.biomek handles * 修改物体attach时,多次赋值当前时间导致卡顿问题, * Revert "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit56d45b94f5. * Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit07d9db20c3. * 添加缺少物料:"plate_well_G12", * host node新增resource add时间统计 create_resource新增handle bump version to 0.9.2 * 修正物料上传时间 改用biomek_test 增加ResultInfoEncoder 支持返回结果上传 * 正确发送return_info结果 * 同步执行状态信息 * 取消raiseValueError提示 * Update biomek_test.py * 0608 DONE * 同步了Biomek.py 现在应可用 * biomek switch back to non-test * temp disable initialize resource * add * fix tip resource data * liquid states * change to debug level * Revert "change to debug level" This reverts commit5d9953c3e5. * Reapply "change to debug level" This reverts commit2487bb6ffc. * fix tip resource data * add full device * add moveit yaml * 修复moveit 增加post_init阶段,给予ros_node反向 * remove necessary node * fix moveit action client * remove necessary imports * Update moveit_interface.py * fix handler_key uppercase * json add liquids * fix setup * add * change to "sources" and "targets" for lh * bump version * remove parent's parent link * change arm's name * change name --------- Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com> Co-authored-by: Junhan Chang <changjh@pku.edu.cn> Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com> Co-authored-by: qxw138 <qxw@stu.pku.edu.cn> * fix move it * fix move it * create_resource * bump ver modify slot type * 增加modbus支持 调整protocol node以更好支持多种类型的read和write * 调整protocol node以更好支持多种类型的read和write * 补充日志 * Device visualization (#42) * Update README and MQTTClient for installation instructions and code improvements * feat: 支持local_config启动 add: 增加对crt path的说明,为传入config.py的相对路径 move: web component * add: registry description * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * feat: node_info_update srv fix: OTDeck cant create * close #12 feat: slave node registry * feat: show machine name fix: host node registry not uploaded * feat: add hplc registry * feat: add hplc registry * fix: hplc status typo * fix: devices/ * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * fix: device.class possible null * fix: HPLC additions with online service * fix: slave mode spin not working * fix: slave mode spin not working * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * feat: 多ProtocolNode 允许子设备ID相同 feat: 上报发现的ActionClient feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报 * feat: 支持env设置config * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * Device visualization (#14) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: missing hostname in devices_names fix: upload_file for model file * fix: missing paho-mqtt package bump version to 0.9.0 * fix startup add ResourceCreateFromOuter.action * fix type hint * update actions * update actions * host node add_resource_from_outer fix cmake list * pass device config to device class * add: bind_parent_ids to resource create action fix: message convert string * fix: host node should not be re_discovered * feat: resource tracker support dict * feat: add more necessary params * feat: fix boolean null in registry action data * feat: add outer resource * 编写mesh添加action * feat: append resource * add action * feat: vis 2d for plr * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate * Device visualization (#22) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * 编写mesh添加action * add action * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: multi channel * fix: aspirate * fix: aspirate * fix: aspirate * fix: aspirate * 提交 * fix: jobadd * fix: jobadd * fix: msg converter * tijiao * add resource creat easy action * identify debug msg * mq client id * 提取lh的joint发布 * unify liquid_handler definition * 修改物料跟随与物料添加逻辑 修改物料跟随与物料添加逻辑 将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写 * Revert "修改物料跟随与物料添加逻辑" This reverts commit498c997ad7. * Reapply "修改物料跟随与物料添加逻辑" This reverts commit3a60d2ae81. * Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization" This reverts commitfa727220af, reversing changes made to498c997ad7. * 修改物料放下时的方法,如果选择 修改物料放下时的方法, 如果选择drop_trash,则删除物料显示 如果选择drop,则让其解除连接 * unilab添加moveit启动 1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活 2,添加pymoveit2的节点,使用json可直接启动 3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动 * 修改物体attach时,多次赋值当前时间导致卡顿问题, * Revert "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit56d45b94f5. * Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit07d9db20c3. * 添加缺少物料:"plate_well_G12", * add * fix tip resource data * liquid states * change to debug level * Revert "change to debug level" This reverts commit5d9953c3e5. * Reapply "change to debug level" This reverts commit2487bb6ffc. * fix tip resource data * add full device * add moveit yaml * 修复moveit 增加post_init阶段,给予ros_node反向 * remove necessary node * fix moveit action client * remove necessary imports * Update moveit_interface.py * fix handler_key uppercase * json add liquids * fix setup * add * change to "sources" and "targets" for lh * bump version * remove parent's parent link * change arm's name * change name * fix ik error --------- Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com> Co-authored-by: Junhan Chang <changjh@pku.edu.cn> * Add Mock Device for Organic Synthesis\添加有机合成的虚拟仪器和Protocol (#43) * Add Device MockChiller Add device MockChiller * Add Device MockFilter * Add Device MockPump * Add Device MockRotavap * Add Device MockSeparator * Add Device MockStirrer * Add Device MockHeater * Add Device MockVacuum * Add Device MockSolenoidValve * Add Device Mock \_init_.py * 规范模拟设备代码与注册表信息 * 更改Mock大写文件夹名 * 删除大写目录 * Edited Mock device json * Match mock device with action * Edit mock device yaml * Add new action * Add Virtual Device, Action, YAML, Protocol for Organic Syn * 单独分类测试的protocol文件夹 * 更名Action --------- Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com> * bump version & protocol fix * hotfix: Add macos_sdk_config (#46) Co-authored-by: quehh <scienceol@outlook.com> * include device_mesh when pip install * 测试自动构建 * try build fix * try build * test artifacts * hotfix: Add .certs in .gitignore * create container * container 添加和更新完成 * Device registry port (#49) * Update README and MQTTClient for installation instructions and code improvements * feat: 支持local_config启动 add: 增加对crt path的说明,为传入config.py的相对路径 move: web component * add: registry description * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * feat: node_info_update srv fix: OTDeck cant create * close #12 feat: slave node registry * feat: show machine name fix: host node registry not uploaded * feat: add hplc registry * feat: add hplc registry * fix: hplc status typo * fix: devices/ * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * fix: device.class possible null * fix: HPLC additions with online service * fix: slave mode spin not working * fix: slave mode spin not working * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * feat: 多ProtocolNode 允许子设备ID相同 feat: 上报发现的ActionClient feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报 * feat: 支持env设置config * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * Device visualization (#14) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: missing hostname in devices_names fix: upload_file for model file * fix: missing paho-mqtt package bump version to 0.9.0 * fix startup add ResourceCreateFromOuter.action * fix type hint * update actions * update actions * host node add_resource_from_outer fix cmake list * pass device config to device class * add: bind_parent_ids to resource create action fix: message convert string * fix: host node should not be re_discovered * feat: resource tracker support dict * feat: add more necessary params * feat: fix boolean null in registry action data * feat: add outer resource * 编写mesh添加action * feat: append resource * add action * feat: vis 2d for plr * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate * Device visualization (#22) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * 编写mesh添加action * add action * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: multi channel * fix: aspirate * fix: aspirate * fix: aspirate * fix: aspirate * 提交 * fix: jobadd * fix: jobadd * fix: msg converter * tijiao * add resource creat easy action * identify debug msg * mq client id * unify liquid_handler definition * Update virtual_device.yaml * 更正了stir和heater的连接方式 * 区分了虚拟仪器中的八通阀和电磁阀,添加了两个阀门的驱动 * 修改了add protocol * 修复了阀门更新版的bug * 修复了添加protocol前缀导致的不能启动的bug * Fix handles * bump version to 0.9.6 * add resource edge upload * update container registry and handles * add virtual_separator virtual_rotavap fix transfer_pump * fix container value add parent_name to edge device id * 大图的问题都修复好了,添加了gassource和vacuum pump的驱动以及注册表 * default resource upload mode is false * 添加了icon的文件名在注册表里面 * 修改了json图中link的格式 * fix resource and edge upload * fix device ports * Fix edge id * 移除device的父节点关联 * separate registry sync and resource_add * 默认不进行注册表报送,通过命令unilabos-register或者增加启动参数 * 完善tip * protocol node不再嵌套显示 * bump version to 0.9.7 新增一个测试PumpTransferProtocol的teststation,亲测可以运行,将八通阀们和转移泵与pump_protocol适配 * protocol node 执行action不应携带自身device id * 添加了一套简易双八通阀工作站JSON,亲测能跑 * 修复了很多protocol,亲测能跑 * 添加了run column和filter through的protocol,亲测能跑 * fix mock_reactor * 修改了大图和小图的json,但是在前端上没看到改变 --------- Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com> Co-authored-by: Junhan Chang <changjh@pku.edu.cn> * 更新workstation注册表 * 添加了两个protocol的检索功能 (#51) * 添加了两个protocol的检索liquid type功能 * fix workstation registry * 修复了没连接的几个仪器的link,添加了container的icon * 修改了json和注册表,现在大图全部的device都链接上了 * 修复了小图的json图,线全部连上了 * add work_station protocol handles (ports) * fix workstation action handle --------- Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com> Co-authored-by: Junhan Chang <changjh@dp.tech> * 新增注册表补全功能,修复Protocol执行失败 * 支持通过导入方式补全注册表,新增工作流unilabos_device_id字段 * 修复不启用注册表补充就无法启动的bug * 修复部分识别error * 修复静态方法识别get status,注册表支持python类型 * status types对于嵌套类型返回的对象,暂时处理成字符串,无法直接进行转换 * 支持通过list[int],list[float]进行Int64MultiArray,Float64MultiArray的替换 * 成功动态导入的不再需要使用静态导入 * Fix handle names (#55) * fix handle names * improve evacuateAndRefill gas source finding * add camera and dependency (#56) * 修复auto-的Action在protocol node下错误注册 * 匹配init param schema格式 * Add channel_sources config in conda_build_config.yaml (#58) * 修复任务执行传参 * Create 5 new protocols & bump version 0.9.8 (#59) * 添加了5个缺失的protocol,验证了可以运行 * bump version to 0.9.8 * 修复新增的Action的字段缺失 --------- Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com> * 转换到ros消息时,要进行基础类型转换 * Update work_station.yaml (#60) * Update work_station.yaml * Checklist里面有XDL跟protocol之间没对齐的问题,工作量有点大找时间写完 * Create prcxi.py * Update prcxi.py * Update Prcxi * 更新中析仪器,以及启动示例 * 修改moveit_interface,并在mqtt上报时发送一个时间戳,方便网页端对数据的筛选 (#62) * Update README and MQTTClient for installation instructions and code improvements * feat: 支持local_config启动 add: 增加对crt path的说明,为传入config.py的相对路径 move: web component * add: registry description * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * feat: node_info_update srv fix: OTDeck cant create * close #12 feat: slave node registry * feat: show machine name fix: host node registry not uploaded * feat: add hplc registry * feat: add hplc registry * fix: hplc status typo * fix: devices/ * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * fix: device.class possible null * fix: HPLC additions with online service * fix: slave mode spin not working * fix: slave mode spin not working * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * feat: 多ProtocolNode 允许子设备ID相同 feat: 上报发现的ActionClient feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报 * feat: 支持env设置config * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * Device visualization (#14) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: missing hostname in devices_names fix: upload_file for model file * fix: missing paho-mqtt package bump version to 0.9.0 * fix startup add ResourceCreateFromOuter.action * fix type hint * update actions * update actions * host node add_resource_from_outer fix cmake list * pass device config to device class * add: bind_parent_ids to resource create action fix: message convert string * fix: host node should not be re_discovered * feat: resource tracker support dict * feat: add more necessary params * feat: fix boolean null in registry action data * feat: add outer resource * 编写mesh添加action * feat: append resource * add action * feat: vis 2d for plr * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate * Device visualization (#22) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * 编写mesh添加action * add action * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: multi channel * fix: aspirate * fix: aspirate * fix: aspirate * fix: aspirate * 提交 * fix: jobadd * fix: jobadd * fix: msg converter * tijiao * add resource creat easy action * identify debug msg * mq client id * 提取lh的joint发布 * unify liquid_handler definition * 修改物料跟随与物料添加逻辑 修改物料跟随与物料添加逻辑 将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写 * Revert "修改物料跟随与物料添加逻辑" This reverts commit498c997ad7. * Reapply "修改物料跟随与物料添加逻辑" This reverts commit3a60d2ae81. * Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization" This reverts commitfa727220af, reversing changes made to498c997ad7. * 修改物料放下时的方法,如果选择 修改物料放下时的方法, 如果选择drop_trash,则删除物料显示 如果选择drop,则让其解除连接 * unilab添加moveit启动 1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活 2,添加pymoveit2的节点,使用json可直接启动 3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动 * 修改物体attach时,多次赋值当前时间导致卡顿问题, * Revert "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit56d45b94f5. * Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit07d9db20c3. * 添加缺少物料:"plate_well_G12", * add * fix tip resource data * liquid states * change to debug level * Revert "change to debug level" This reverts commit5d9953c3e5. * Reapply "change to debug level" This reverts commit2487bb6ffc. * fix tip resource data * add full device * add moveit yaml * 修复moveit 增加post_init阶段,给予ros_node反向 * remove necessary node * fix moveit action client * remove necessary imports * Update moveit_interface.py * fix handler_key uppercase * json add liquids * fix setup * add * change to "sources" and "targets" for lh * bump version * remove parent's parent link * change arm's name * change name * fix ik error * 修改moveit_interface,并在mqtt上报时发送一个时间戳 --------- Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: Junhan Chang <changjh@pku.edu.cn> * 更新实例 * 更新实例 * 更新实例 * 修正prcxi启动 * 更新PRCXI配置,修改主机地址和设置状态,并添加示例用法 * add pickup tips for prcxi * 任意执行错误都应该返回failed * 任意执行错误都应该返回failed * Add plateT6 to PRCXI configuration and enhance error handling in liquid handling * prcxi blending * assert blending_times > 0 * update prcxi * update prcxi registry * Update prcxi.py to fit the function in unilabos. * 不生成已配置action的动作,增加prcxi的debug模式 * 增加注册表版本参数,支持将auto-指令人工检查后非auto,不生成人工已检查的指令,取消不必要的description生成 * 增加注册表版本参数,支持将auto-指令人工检查后非auto,不生成人工已检查的指令,取消不必要的description生成 * Update prcxi.py * 修复了部分的protocol因为XDL更新导致的问题 (#61) * 修复了部分的protocol因为XDL更新导致的问题 但是pumptransfer,add,dissolve,separate还没修,后续还需要写virtual固体加料器 * 补充了四个action * 添加了固体加样器,丰富了json,修改了add protocol * bump version to 0.9.9 * fix bugs from new actions * protocol完整修复版本& bump version to 0.9.10 * 修补了一些单位处理,bump version to 0.9.11 * 优化了全protocol的运行时间,除了pumptransfer相关的还没 * 补充了剩下的几个protocol --------- Co-authored-by: Junhan Chang <changjh@dp.tech> Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com> * 修复action移除时的报错,更新注册表 * Update prcxi.py * Update prcxi.py * 新增simulator * Update prcxi.py * Update trash * Update prcxi.py * Update prcxi.py * Update for discard tips * Update prcxi.py * Update PRCXI * 更新axis等参数 * Update 9320 * get_well_container&get_tip_rack * update * Update 9320 * update * deck * 更新注册表&增加资源,parent应为resources字段 * Update 9320 * update * 新增set liquid方法 * 新增set liquid方法 * action to resource & 0.9.12 (#64) * action to resource & 0.9.12 * stir和adjustph的中的bug修不好 * modify prcxi * 0.9.12 update registry * update * update * registry upadte * Update * update * container_for_nothing * mix * registry fix * registry fix * registry fix * Update * Update prcxi.py * SET TIP RACK * bump version * update registry version & category * update set tip rack * yaml dump支持ordered dict,支持config_info * fix devices * fix resource check serialize * fix: Protocol node resource run (#65) * stir和adjustph的中的bug修不好 * fix sub-resource query in protocol node compiling * add resource placeholder to vessels * add the rest yaml * Update work_station.yaml --------- Co-authored-by: KCFeng425 <2100011801@stu.pku.edu.cn> * 采用http报送resource * 采用http报送resource * update * Update .gitignore * bump version to 0.10.0 * default param simulator * slim * Update * Update for prcxi * Update * Update * Refactor PRCXI9300Deck initialization and update plate configurations - Changed deck name from "PRCXI_Deck" to "PRCXI_Deck_9300". - Updated plate4 initialization to use get_well_container instead of get_tip_rack. - Modified plate4 material details with new UUID, code, and name. - Renamed output JSON file to "deck_9300_new.json". - Uncommented and adjusted liquid handling operations for clarity and future use. * test * update * Update prcxi_9300.json This one is good * update * fix protocol_node communication transfer * 修复注册表handles类型错误的问题 * 物料添加失败应该直接raise ValueError,不要等待 * 更正注册表中的数字类型 * Delete unnecessary files. * 新增lab_id直接传入 * fix vessel_id param passing in protocols * 新增dll预载,保证部分设备可正常使用unilabos_msgs * 修复可能的web template找不到的问题 新增联网获取json启动 删除非-g传入启动json的方式 兼容传参参数名短横线与下划线 * 修复可能的web template找不到的问题 新增联网获取json启动 删除非-g传入启动json的方式 兼容传参参数名短横线与下划线 更新版本到0.10.1 修复Upload Registry镜像不匹配 * 新增用户引导 * Device visualization (#67) * Update README and MQTTClient for installation instructions and code improvements * feat: 支持local_config启动 add: 增加对crt path的说明,为传入config.py的相对路径 move: web component * add: registry description * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * feat: node_info_update srv fix: OTDeck cant create * close #12 feat: slave node registry * feat: show machine name fix: host node registry not uploaded * feat: add hplc registry * feat: add hplc registry * fix: hplc status typo * fix: devices/ * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * fix: device.class possible null * fix: HPLC additions with online service * fix: slave mode spin not working * fix: slave mode spin not working * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * feat: 多ProtocolNode 允许子设备ID相同 feat: 上报发现的ActionClient feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报 * feat: 支持env设置config * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * Device visualization (#14) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: missing hostname in devices_names fix: upload_file for model file * fix: missing paho-mqtt package bump version to 0.9.0 * fix startup add ResourceCreateFromOuter.action * fix type hint * update actions * update actions * host node add_resource_from_outer fix cmake list * pass device config to device class * add: bind_parent_ids to resource create action fix: message convert string * fix: host node should not be re_discovered * feat: resource tracker support dict * feat: add more necessary params * feat: fix boolean null in registry action data * feat: add outer resource * 编写mesh添加action * feat: append resource * add action * feat: vis 2d for plr * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate * Device visualization (#22) * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * add 3d visualization * 完成在main中启动设备可视化 完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model 添加物料模型管理类,遍历物料与resource_model,完成TF数据收集 * 完成TF发布 * 修改模型方向,在yaml中添加变换属性 * 添加物料tf变化时,发送topic到前端 另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题 * 添加关节发布节点与物料可视化节点进入unilab * 使用json启动plr与3D模型仿真 * 完成启动OT并联动rviz * 修复rviz位置问题, 修复rviz位置问题, 在无tf变动时减缓发送频率 在backend中添加物料跟随方法 * fix: running logic * fix: running logic * fix: missing ot * 在main中直接初始化republisher和物料的mesh节点 * 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中 * 编写mesh添加action * add action * fix * fix: browser on rviz * fix: cloud bridge error fallback to local * fix: salve auto run rviz * 初始化两个plate --------- Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> * fix: multi channel * fix: aspirate * fix: aspirate * fix: aspirate * fix: aspirate * 提交 * fix: jobadd * fix: jobadd * fix: msg converter * tijiao * add resource creat easy action * identify debug msg * mq client id * 提取lh的joint发布 * unify liquid_handler definition * 修改物料跟随与物料添加逻辑 修改物料跟随与物料添加逻辑 将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写 * Revert "修改物料跟随与物料添加逻辑" This reverts commit498c997ad7. * Reapply "修改物料跟随与物料添加逻辑" This reverts commit3a60d2ae81. * Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization" This reverts commitfa727220af, reversing changes made to498c997ad7. * 修改物料放下时的方法,如果选择 修改物料放下时的方法, 如果选择drop_trash,则删除物料显示 如果选择drop,则让其解除连接 * unilab添加moveit启动 1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活 2,添加pymoveit2的节点,使用json可直接启动 3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动 * 修改物体attach时,多次赋值当前时间导致卡顿问题, * Revert "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit56d45b94f5. * Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题," This reverts commit07d9db20c3. * 添加缺少物料:"plate_well_G12", * add * fix tip resource data * liquid states * change to debug level * Revert "change to debug level" This reverts commit5d9953c3e5. * Reapply "change to debug level" This reverts commit2487bb6ffc. * fix tip resource data * add full device * add moveit yaml * 修复moveit 增加post_init阶段,给予ros_node反向 * remove necessary node * fix moveit action client * remove necessary imports * Update moveit_interface.py * fix handler_key uppercase * json add liquids * fix setup * add * change to "sources" and "targets" for lh * bump version * remove parent's parent link * change arm's name * change name * fix ik error * 修改moveit_interface,并在mqtt上报时发送一个时间戳 * 添加机械臂和移液站 * 添加 * 添加硬件 * update * 添加 --------- Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com> Co-authored-by: zhangshixiang <@zhangshixiang> Co-authored-by: Junhan Chang <changjh@pku.edu.cn> * 更新注册表 --------- Co-authored-by: Junhan Chang <changjh@pku.edu.cn> Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com> Co-authored-by: qxw138 <qxw@stu.pku.edu.cn> Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com> Co-authored-by: Harvey Que <Q-Query@outlook.com> Co-authored-by: Kongchang Feng <2100011801@stu.pku.edu.cn> Co-authored-by: hh. <103566763+Mile-Away@users.noreply.github.com> Co-authored-by: quehh <scienceol@outlook.com> Co-authored-by: Harvey Que <quehaohui@dp.tech> Co-authored-by: Junhan Chang <changjh@dp.tech> Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>
726 lines
28 KiB
Python
726 lines
28 KiB
Python
import networkx as nx
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import re
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import logging
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from typing import List, Dict, Any, Union
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from .pump_protocol import generate_pump_protocol_with_rinsing
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logger = logging.getLogger(__name__)
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def debug_print(message):
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"""调试输出"""
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print(f"[ADD] {message}", flush=True)
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logger.info(f"[ADD] {message}")
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def parse_volume_input(volume_input: Union[str, float]) -> float:
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"""
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解析体积输入,支持带单位的字符串
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Args:
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volume_input: 体积输入(如 "2.7 mL", "2.67 mL", "?", 10.0)
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Returns:
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float: 体积(毫升)
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"""
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if isinstance(volume_input, (int, float)):
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debug_print(f"📏 体积输入为数值: {volume_input}")
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return float(volume_input)
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if not volume_input or not str(volume_input).strip():
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debug_print(f"⚠️ 体积输入为空,返回0.0mL")
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return 0.0
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volume_str = str(volume_input).lower().strip()
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debug_print(f"🔍 解析体积输入: '{volume_str}'")
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# 处理未知体积
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if volume_str in ['?', 'unknown', 'tbd', 'to be determined']:
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default_volume = 10.0 # 默认10mL
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debug_print(f"❓ 检测到未知体积,使用默认值: {default_volume}mL 🎯")
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return default_volume
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# 移除空格并提取数字和单位
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volume_clean = re.sub(r'\s+', '', volume_str)
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# 匹配数字和单位的正则表达式
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match = re.match(r'([0-9]*\.?[0-9]+)\s*(ml|l|μl|ul|microliter|milliliter|liter)?', volume_clean)
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if not match:
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debug_print(f"❌ 无法解析体积: '{volume_str}',使用默认值10mL")
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return 10.0
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value = float(match.group(1))
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unit = match.group(2) or 'ml' # 默认单位为毫升
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# 转换为毫升
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if unit in ['l', 'liter']:
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volume = value * 1000.0 # L -> mL
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debug_print(f"🔄 体积转换: {value}L → {volume}mL")
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elif unit in ['μl', 'ul', 'microliter']:
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volume = value / 1000.0 # μL -> mL
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debug_print(f"🔄 体积转换: {value}μL → {volume}mL")
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else: # ml, milliliter 或默认
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volume = value # 已经是mL
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debug_print(f"✅ 体积已为mL: {volume}mL")
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return volume
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def parse_mass_input(mass_input: Union[str, float]) -> float:
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"""
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解析质量输入,支持带单位的字符串
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Args:
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mass_input: 质量输入(如 "19.3 g", "4.5 g", 2.5)
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Returns:
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float: 质量(克)
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"""
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if isinstance(mass_input, (int, float)):
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debug_print(f"⚖️ 质量输入为数值: {mass_input}g")
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return float(mass_input)
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if not mass_input or not str(mass_input).strip():
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debug_print(f"⚠️ 质量输入为空,返回0.0g")
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return 0.0
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mass_str = str(mass_input).lower().strip()
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debug_print(f"🔍 解析质量输入: '{mass_str}'")
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# 移除空格并提取数字和单位
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mass_clean = re.sub(r'\s+', '', mass_str)
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# 匹配数字和单位的正则表达式
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match = re.match(r'([0-9]*\.?[0-9]+)\s*(g|mg|kg|gram|milligram|kilogram)?', mass_clean)
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if not match:
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debug_print(f"❌ 无法解析质量: '{mass_str}',返回0.0g")
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return 0.0
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value = float(match.group(1))
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unit = match.group(2) or 'g' # 默认单位为克
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# 转换为克
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if unit in ['mg', 'milligram']:
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mass = value / 1000.0 # mg -> g
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debug_print(f"🔄 质量转换: {value}mg → {mass}g")
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elif unit in ['kg', 'kilogram']:
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mass = value * 1000.0 # kg -> g
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debug_print(f"🔄 质量转换: {value}kg → {mass}g")
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else: # g, gram 或默认
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mass = value # 已经是g
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debug_print(f"✅ 质量已为g: {mass}g")
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return mass
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def parse_time_input(time_input: Union[str, float]) -> float:
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"""
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解析时间输入,支持带单位的字符串
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Args:
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time_input: 时间输入(如 "1 h", "20 min", "30 s", 60.0)
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Returns:
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float: 时间(秒)
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"""
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if isinstance(time_input, (int, float)):
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debug_print(f"⏱️ 时间输入为数值: {time_input}秒")
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return float(time_input)
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if not time_input or not str(time_input).strip():
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debug_print(f"⚠️ 时间输入为空,返回0秒")
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return 0.0
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time_str = str(time_input).lower().strip()
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debug_print(f"🔍 解析时间输入: '{time_str}'")
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# 处理未知时间
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if time_str in ['?', 'unknown', 'tbd']:
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default_time = 60.0 # 默认1分钟
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debug_print(f"❓ 检测到未知时间,使用默认值: {default_time}s (1分钟) ⏰")
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return default_time
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# 移除空格并提取数字和单位
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time_clean = re.sub(r'\s+', '', time_str)
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# 匹配数字和单位的正则表达式
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match = re.match(r'([0-9]*\.?[0-9]+)\s*(s|sec|second|min|minute|h|hr|hour|d|day)?', time_clean)
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if not match:
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debug_print(f"❌ 无法解析时间: '{time_str}',返回0s")
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return 0.0
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value = float(match.group(1))
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unit = match.group(2) or 's' # 默认单位为秒
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# 转换为秒
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if unit in ['min', 'minute']:
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time_sec = value * 60.0 # min -> s
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debug_print(f"🔄 时间转换: {value}分钟 → {time_sec}秒")
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elif unit in ['h', 'hr', 'hour']:
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time_sec = value * 3600.0 # h -> s
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debug_print(f"🔄 时间转换: {value}小时 → {time_sec}秒")
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elif unit in ['d', 'day']:
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time_sec = value * 86400.0 # d -> s
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debug_print(f"🔄 时间转换: {value}天 → {time_sec}秒")
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else: # s, sec, second 或默认
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time_sec = value # 已经是s
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debug_print(f"✅ 时间已为秒: {time_sec}秒")
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return time_sec
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def find_reagent_vessel(G: nx.DiGraph, reagent: str) -> str:
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"""增强版试剂容器查找,支持固体和液体"""
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debug_print(f"🔍 开始查找试剂 '{reagent}' 的容器...")
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# 🔧 方法1:直接搜索 data.reagent_name 和 config.reagent
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debug_print(f"📋 方法1: 搜索reagent字段...")
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for node in G.nodes():
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node_data = G.nodes[node].get('data', {})
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node_type = G.nodes[node].get('type', '')
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config_data = G.nodes[node].get('config', {})
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# 只搜索容器类型的节点
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if node_type == 'container':
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reagent_name = node_data.get('reagent_name', '').lower()
|
||
config_reagent = config_data.get('reagent', '').lower()
|
||
|
||
# 精确匹配
|
||
if reagent_name == reagent.lower() or config_reagent == reagent.lower():
|
||
debug_print(f"✅ 通过reagent字段精确匹配到容器: {node} 🎯")
|
||
return node
|
||
|
||
# 模糊匹配
|
||
if (reagent.lower() in reagent_name and reagent_name) or \
|
||
(reagent.lower() in config_reagent and config_reagent):
|
||
debug_print(f"✅ 通过reagent字段模糊匹配到容器: {node} 🔍")
|
||
return node
|
||
|
||
# 🔧 方法2:常见的容器命名规则
|
||
debug_print(f"📋 方法2: 使用命名规则查找...")
|
||
reagent_clean = reagent.lower().replace(' ', '_').replace('-', '_')
|
||
possible_names = [
|
||
reagent_clean,
|
||
f"flask_{reagent_clean}",
|
||
f"bottle_{reagent_clean}",
|
||
f"vessel_{reagent_clean}",
|
||
f"{reagent_clean}_flask",
|
||
f"{reagent_clean}_bottle",
|
||
f"reagent_{reagent_clean}",
|
||
f"reagent_bottle_{reagent_clean}",
|
||
f"solid_reagent_bottle_{reagent_clean}",
|
||
f"reagent_bottle_1", # 通用试剂瓶
|
||
f"reagent_bottle_2",
|
||
f"reagent_bottle_3"
|
||
]
|
||
|
||
debug_print(f"🔍 尝试的容器名称: {possible_names[:5]}... (共{len(possible_names)}个)")
|
||
|
||
for name in possible_names:
|
||
if name in G.nodes():
|
||
node_type = G.nodes[name].get('type', '')
|
||
if node_type == 'container':
|
||
debug_print(f"✅ 通过命名规则找到容器: {name} 📝")
|
||
return name
|
||
|
||
# 🔧 方法3:节点名称模糊匹配
|
||
debug_print(f"📋 方法3: 节点名称模糊匹配...")
|
||
for node_id in G.nodes():
|
||
node_data = G.nodes[node_id]
|
||
if node_data.get('type') == 'container':
|
||
# 检查节点名称是否包含试剂名称
|
||
if reagent_clean in node_id.lower():
|
||
debug_print(f"✅ 通过节点名称模糊匹配到容器: {node_id} 🔍")
|
||
return node_id
|
||
|
||
# 检查液体类型匹配
|
||
vessel_data = node_data.get('data', {})
|
||
liquids = vessel_data.get('liquid', [])
|
||
for liquid in liquids:
|
||
if isinstance(liquid, dict):
|
||
liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
|
||
if liquid_type.lower() == reagent.lower():
|
||
debug_print(f"✅ 通过液体类型匹配到容器: {node_id} 💧")
|
||
return node_id
|
||
|
||
# 🔧 方法4:使用第一个试剂瓶作为备选
|
||
debug_print(f"📋 方法4: 查找备选试剂瓶...")
|
||
for node_id in G.nodes():
|
||
node_data = G.nodes[node_id]
|
||
if (node_data.get('type') == 'container' and
|
||
('reagent' in node_id.lower() or 'bottle' in node_id.lower())):
|
||
debug_print(f"⚠️ 未找到专用容器,使用备选试剂瓶: {node_id} 🔄")
|
||
return node_id
|
||
|
||
debug_print(f"❌ 所有方法都失败了,无法找到容器!")
|
||
raise ValueError(f"找不到试剂 '{reagent}' 对应的容器")
|
||
|
||
def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
|
||
"""查找连接到指定容器的搅拌器"""
|
||
debug_print(f"🔍 查找连接到容器 '{vessel}' 的搅拌器...")
|
||
|
||
stirrer_nodes = []
|
||
for node in G.nodes():
|
||
node_class = G.nodes[node].get('class', '').lower()
|
||
if 'stirrer' in node_class:
|
||
stirrer_nodes.append(node)
|
||
debug_print(f"📋 发现搅拌器: {node}")
|
||
|
||
debug_print(f"📊 共找到 {len(stirrer_nodes)} 个搅拌器")
|
||
|
||
# 查找连接到容器的搅拌器
|
||
for stirrer in stirrer_nodes:
|
||
if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
|
||
debug_print(f"✅ 找到连接的搅拌器: {stirrer} 🔗")
|
||
return stirrer
|
||
|
||
# 返回第一个搅拌器
|
||
if stirrer_nodes:
|
||
debug_print(f"⚠️ 未找到直接连接的搅拌器,使用第一个: {stirrer_nodes[0]} 🔄")
|
||
return stirrer_nodes[0]
|
||
|
||
debug_print(f"❌ 未找到任何搅拌器")
|
||
return ""
|
||
|
||
def find_solid_dispenser(G: nx.DiGraph) -> str:
|
||
"""查找固体加样器"""
|
||
debug_print(f"🔍 查找固体加样器...")
|
||
|
||
for node in G.nodes():
|
||
node_class = G.nodes[node].get('class', '').lower()
|
||
if 'solid_dispenser' in node_class or 'dispenser' in node_class:
|
||
debug_print(f"✅ 找到固体加样器: {node} 🥄")
|
||
return node
|
||
|
||
debug_print(f"❌ 未找到固体加样器")
|
||
return ""
|
||
|
||
# 🆕 创建进度日志动作
|
||
def create_action_log(message: str, emoji: str = "📝") -> Dict[str, Any]:
|
||
"""创建一个动作日志"""
|
||
full_message = f"{emoji} {message}"
|
||
debug_print(full_message)
|
||
logger.info(full_message)
|
||
print(f"[ACTION] {full_message}", flush=True)
|
||
|
||
return {
|
||
"action_name": "wait",
|
||
"action_kwargs": {
|
||
"time": 0.1,
|
||
"log_message": full_message
|
||
}
|
||
}
|
||
|
||
def generate_add_protocol(
|
||
G: nx.DiGraph,
|
||
vessel: dict, # 🔧 修改:现在接收字典类型的 vessel
|
||
reagent: str,
|
||
# 🔧 修复:所有参数都用 Union 类型,支持字符串和数值
|
||
volume: Union[str, float] = 0.0,
|
||
mass: Union[str, float] = 0.0,
|
||
amount: str = "",
|
||
time: Union[str, float] = 0.0,
|
||
stir: bool = False,
|
||
stir_speed: float = 300.0,
|
||
viscous: bool = False,
|
||
purpose: str = "添加试剂",
|
||
# XDL扩展参数
|
||
mol: str = "",
|
||
event: str = "",
|
||
rate_spec: str = "",
|
||
equiv: str = "",
|
||
ratio: str = "",
|
||
**kwargs
|
||
) -> List[Dict[str, Any]]:
|
||
"""
|
||
生成添加试剂协议 - 修复版
|
||
|
||
支持所有XDL参数和单位:
|
||
- vessel: Resource类型字典,包含id字段
|
||
- volume: "2.7 mL", "2.67 mL", "?" 或数值
|
||
- mass: "19.3 g", "4.5 g" 或数值
|
||
- time: "1 h", "20 min" 或数值(秒)
|
||
- mol: "0.28 mol", "16.2 mmol", "25.2 mmol"
|
||
- rate_spec: "portionwise", "dropwise"
|
||
- event: "A", "B"
|
||
- equiv: "1.1"
|
||
- ratio: "?", "1:1"
|
||
"""
|
||
|
||
# 🔧 核心修改:从字典中提取容器ID
|
||
# 统一处理vessel参数
|
||
if isinstance(vessel, dict):
|
||
if "id" not in vessel:
|
||
vessel_id = list(vessel.values())[0].get("id", "")
|
||
else:
|
||
vessel_id = vessel.get("id", "")
|
||
vessel_data = vessel.get("data", {})
|
||
else:
|
||
vessel_id = str(vessel)
|
||
vessel_data = G.nodes[vessel_id].get("data", {}) if vessel_id in G.nodes() else {}
|
||
|
||
# 🔧 修改:更新容器的液体体积(假设有 liquid_volume 字段)
|
||
if "data" in vessel and "liquid_volume" in vessel["data"]:
|
||
if isinstance(vessel["data"]["liquid_volume"], list) and len(vessel["data"]["liquid_volume"]) > 0:
|
||
vessel["data"]["liquid_volume"][0] -= parse_volume_input(volume)
|
||
|
||
debug_print("=" * 60)
|
||
debug_print("🚀 开始生成添加试剂协议")
|
||
debug_print(f"📋 原始参数:")
|
||
debug_print(f" 🥼 vessel: {vessel} (ID: {vessel_id})")
|
||
debug_print(f" 🧪 reagent: '{reagent}'")
|
||
debug_print(f" 📏 volume: {volume} (类型: {type(volume)})")
|
||
debug_print(f" ⚖️ mass: {mass} (类型: {type(mass)})")
|
||
debug_print(f" ⏱️ time: {time} (类型: {type(time)})")
|
||
debug_print(f" 🧬 mol: '{mol}'")
|
||
debug_print(f" 🎯 event: '{event}'")
|
||
debug_print(f" ⚡ rate_spec: '{rate_spec}'")
|
||
debug_print(f" 🌪️ stir: {stir}")
|
||
debug_print(f" 🔄 stir_speed: {stir_speed} rpm")
|
||
debug_print("=" * 60)
|
||
|
||
action_sequence = []
|
||
|
||
# === 参数验证 ===
|
||
debug_print("🔍 步骤1: 参数验证...")
|
||
action_sequence.append(create_action_log(f"开始添加试剂 '{reagent}' 到容器 '{vessel_id}'", "🎬"))
|
||
|
||
if not vessel or not vessel_id:
|
||
debug_print("❌ vessel 参数不能为空")
|
||
raise ValueError("vessel 参数不能为空")
|
||
if not reagent:
|
||
debug_print("❌ reagent 参数不能为空")
|
||
raise ValueError("reagent 参数不能为空")
|
||
|
||
if vessel_id not in G.nodes():
|
||
debug_print(f"❌ 容器 '{vessel_id}' 不存在于系统中")
|
||
raise ValueError(f"容器 '{vessel_id}' 不存在于系统中")
|
||
|
||
debug_print("✅ 基本参数验证通过")
|
||
|
||
# === 🔧 关键修复:参数解析 ===
|
||
debug_print("🔍 步骤2: 参数解析...")
|
||
action_sequence.append(create_action_log("正在解析添加参数...", "🔍"))
|
||
|
||
# 解析各种参数为数值
|
||
final_volume = parse_volume_input(volume)
|
||
final_mass = parse_mass_input(mass)
|
||
final_time = parse_time_input(time)
|
||
|
||
debug_print(f"📊 解析结果:")
|
||
debug_print(f" 📏 体积: {final_volume}mL")
|
||
debug_print(f" ⚖️ 质量: {final_mass}g")
|
||
debug_print(f" ⏱️ 时间: {final_time}s")
|
||
debug_print(f" 🧬 摩尔: '{mol}'")
|
||
debug_print(f" 🎯 事件: '{event}'")
|
||
debug_print(f" ⚡ 速率: '{rate_spec}'")
|
||
|
||
# === 判断添加类型 ===
|
||
debug_print("🔍 步骤3: 判断添加类型...")
|
||
|
||
# 🔧 修复:现在使用解析后的数值进行比较
|
||
is_solid = (final_mass > 0 or (mol and mol.strip() != ""))
|
||
is_liquid = (final_volume > 0)
|
||
|
||
if not is_solid and not is_liquid:
|
||
# 默认为液体,10mL
|
||
is_liquid = True
|
||
final_volume = 10.0
|
||
debug_print("⚠️ 未指定体积或质量,默认为10mL液体")
|
||
|
||
add_type = "固体" if is_solid else "液体"
|
||
add_emoji = "🧂" if is_solid else "💧"
|
||
debug_print(f"📋 添加类型: {add_type} {add_emoji}")
|
||
|
||
action_sequence.append(create_action_log(f"确定添加类型: {add_type} {add_emoji}", "📋"))
|
||
|
||
# === 执行添加流程 ===
|
||
debug_print("🔍 步骤4: 执行添加流程...")
|
||
|
||
try:
|
||
if is_solid:
|
||
# === 固体添加路径 ===
|
||
debug_print(f"🧂 使用固体添加路径")
|
||
action_sequence.append(create_action_log("开始固体试剂添加流程", "🧂"))
|
||
|
||
solid_dispenser = find_solid_dispenser(G)
|
||
if solid_dispenser:
|
||
action_sequence.append(create_action_log(f"找到固体加样器: {solid_dispenser}", "🥄"))
|
||
|
||
# 启动搅拌
|
||
if stir:
|
||
debug_print("🌪️ 准备启动搅拌...")
|
||
action_sequence.append(create_action_log("准备启动搅拌器", "🌪️"))
|
||
|
||
stirrer_id = find_connected_stirrer(G, vessel_id) # 🔧 使用 vessel_id
|
||
if stirrer_id:
|
||
action_sequence.append(create_action_log(f"启动搅拌器 {stirrer_id} (速度: {stir_speed} rpm)", "🔄"))
|
||
|
||
action_sequence.append({
|
||
"device_id": stirrer_id,
|
||
"action_name": "start_stir",
|
||
"action_kwargs": {
|
||
"vessel": vessel_id, # 🔧 使用 vessel_id
|
||
"stir_speed": stir_speed,
|
||
"purpose": f"准备添加固体 {reagent}"
|
||
}
|
||
})
|
||
# 等待搅拌稳定
|
||
action_sequence.append(create_action_log("等待搅拌稳定...", "⏳"))
|
||
action_sequence.append({
|
||
"action_name": "wait",
|
||
"action_kwargs": {"time": 3}
|
||
})
|
||
|
||
# 固体加样
|
||
add_kwargs = {
|
||
"vessel": vessel_id, # 🔧 使用 vessel_id
|
||
"reagent": reagent,
|
||
"purpose": purpose,
|
||
"event": event,
|
||
"rate_spec": rate_spec
|
||
}
|
||
|
||
if final_mass > 0:
|
||
add_kwargs["mass"] = str(final_mass)
|
||
action_sequence.append(create_action_log(f"准备添加固体: {final_mass}g", "⚖️"))
|
||
if mol and mol.strip():
|
||
add_kwargs["mol"] = mol
|
||
action_sequence.append(create_action_log(f"按摩尔数添加: {mol}", "🧬"))
|
||
if equiv and equiv.strip():
|
||
add_kwargs["equiv"] = equiv
|
||
action_sequence.append(create_action_log(f"当量: {equiv}", "🔢"))
|
||
|
||
action_sequence.append(create_action_log("开始固体加样操作", "🥄"))
|
||
action_sequence.append({
|
||
"device_id": solid_dispenser,
|
||
"action_name": "add_solid",
|
||
"action_kwargs": add_kwargs
|
||
})
|
||
|
||
action_sequence.append(create_action_log("固体加样完成", "✅"))
|
||
|
||
# 添加后等待
|
||
if final_time > 0:
|
||
wait_minutes = final_time / 60
|
||
action_sequence.append(create_action_log(f"等待反应进行 ({wait_minutes:.1f}分钟)", "⏰"))
|
||
action_sequence.append({
|
||
"action_name": "wait",
|
||
"action_kwargs": {"time": final_time}
|
||
})
|
||
|
||
debug_print(f"✅ 固体添加完成")
|
||
else:
|
||
debug_print("❌ 未找到固体加样器,跳过固体添加")
|
||
action_sequence.append(create_action_log("未找到固体加样器,无法添加固体", "❌"))
|
||
|
||
else:
|
||
# === 液体添加路径 ===
|
||
debug_print(f"💧 使用液体添加路径")
|
||
action_sequence.append(create_action_log("开始液体试剂添加流程", "💧"))
|
||
|
||
# 查找试剂容器
|
||
action_sequence.append(create_action_log("正在查找试剂容器...", "🔍"))
|
||
reagent_vessel = find_reagent_vessel(G, reagent)
|
||
action_sequence.append(create_action_log(f"找到试剂容器: {reagent_vessel}", "🧪"))
|
||
|
||
# 启动搅拌
|
||
if stir:
|
||
debug_print("🌪️ 准备启动搅拌...")
|
||
action_sequence.append(create_action_log("准备启动搅拌器", "🌪️"))
|
||
|
||
stirrer_id = find_connected_stirrer(G, vessel_id) # 🔧 使用 vessel_id
|
||
if stirrer_id:
|
||
action_sequence.append(create_action_log(f"启动搅拌器 {stirrer_id} (速度: {stir_speed} rpm)", "🔄"))
|
||
|
||
action_sequence.append({
|
||
"device_id": stirrer_id,
|
||
"action_name": "start_stir",
|
||
"action_kwargs": {
|
||
"vessel": vessel_id, # 🔧 使用 vessel_id
|
||
"stir_speed": stir_speed,
|
||
"purpose": f"准备添加液体 {reagent}"
|
||
}
|
||
})
|
||
# 等待搅拌稳定
|
||
action_sequence.append(create_action_log("等待搅拌稳定...", "⏳"))
|
||
action_sequence.append({
|
||
"action_name": "wait",
|
||
"action_kwargs": {"time": 5}
|
||
})
|
||
|
||
# 计算流速
|
||
if final_time > 0:
|
||
flowrate = final_volume / final_time * 60 # mL/min
|
||
transfer_flowrate = flowrate
|
||
debug_print(f"⚡ 根据时间计算流速: {flowrate:.2f} mL/min")
|
||
else:
|
||
if rate_spec == "dropwise":
|
||
flowrate = 0.5 # 滴加,很慢
|
||
transfer_flowrate = 0.2
|
||
debug_print(f"💧 滴加模式,流速: {flowrate} mL/min")
|
||
elif viscous:
|
||
flowrate = 1.0 # 粘性液体
|
||
transfer_flowrate = 0.3
|
||
debug_print(f"🍯 粘性液体,流速: {flowrate} mL/min")
|
||
else:
|
||
flowrate = 2.5 # 正常流速
|
||
transfer_flowrate = 0.5
|
||
debug_print(f"⚡ 正常流速: {flowrate} mL/min")
|
||
|
||
action_sequence.append(create_action_log(f"设置流速: {flowrate:.2f} mL/min", "⚡"))
|
||
action_sequence.append(create_action_log(f"开始转移 {final_volume}mL 液体", "🚰"))
|
||
|
||
# 调用pump protocol
|
||
pump_actions = generate_pump_protocol_with_rinsing(
|
||
G=G,
|
||
from_vessel=reagent_vessel,
|
||
to_vessel=vessel_id, # 🔧 使用 vessel_id
|
||
volume=final_volume,
|
||
amount=amount,
|
||
time=final_time,
|
||
viscous=viscous,
|
||
rinsing_solvent="",
|
||
rinsing_volume=0.0,
|
||
rinsing_repeats=0,
|
||
solid=False,
|
||
flowrate=flowrate,
|
||
transfer_flowrate=transfer_flowrate,
|
||
rate_spec=rate_spec,
|
||
event=event,
|
||
through="",
|
||
**kwargs
|
||
)
|
||
action_sequence.extend(pump_actions)
|
||
debug_print(f"✅ 液体转移完成,添加了 {len(pump_actions)} 个动作")
|
||
action_sequence.append(create_action_log(f"液体转移完成 ({len(pump_actions)} 个操作)", "✅"))
|
||
|
||
except Exception as e:
|
||
debug_print(f"❌ 试剂添加失败: {str(e)}")
|
||
action_sequence.append(create_action_log(f"试剂添加失败: {str(e)}", "❌"))
|
||
# 添加错误日志
|
||
action_sequence.append({
|
||
"device_id": "system",
|
||
"action_name": "log_message",
|
||
"action_kwargs": {
|
||
"message": f"试剂 '{reagent}' 添加失败: {str(e)}"
|
||
}
|
||
})
|
||
|
||
# === 最终结果 ===
|
||
debug_print("=" * 60)
|
||
debug_print(f"🎉 添加试剂协议生成完成")
|
||
debug_print(f"📊 总动作数: {len(action_sequence)}")
|
||
debug_print(f"📋 处理总结:")
|
||
debug_print(f" 🧪 试剂: {reagent}")
|
||
debug_print(f" {add_emoji} 添加类型: {add_type}")
|
||
debug_print(f" 🥼 目标容器: {vessel_id}")
|
||
if is_liquid:
|
||
debug_print(f" 📏 体积: {final_volume}mL")
|
||
if is_solid:
|
||
debug_print(f" ⚖️ 质量: {final_mass}g")
|
||
debug_print(f" 🧬 摩尔: {mol}")
|
||
debug_print("=" * 60)
|
||
|
||
# 添加完成日志
|
||
summary_msg = f"试剂添加协议完成: {reagent} → {vessel_id}"
|
||
if is_liquid:
|
||
summary_msg += f" ({final_volume}mL)"
|
||
if is_solid:
|
||
summary_msg += f" ({final_mass}g)"
|
||
|
||
action_sequence.append(create_action_log(summary_msg, "🎉"))
|
||
|
||
return action_sequence
|
||
|
||
# === 便捷函数 ===
|
||
# 🔧 修改便捷函数的参数类型
|
||
|
||
def add_liquid_volume(G: nx.DiGraph, vessel: dict, reagent: str, volume: Union[str, float],
|
||
time: Union[str, float] = 0.0, rate_spec: str = "") -> List[Dict[str, Any]]:
|
||
"""添加指定体积的液体试剂"""
|
||
vessel_id = vessel["id"]
|
||
debug_print(f"💧 快速添加液体: {reagent} ({volume}) → {vessel_id}")
|
||
return generate_add_protocol(
|
||
G, vessel, reagent,
|
||
volume=volume,
|
||
time=time,
|
||
rate_spec=rate_spec
|
||
)
|
||
|
||
def add_solid_mass(G: nx.DiGraph, vessel: dict, reagent: str, mass: Union[str, float],
|
||
event: str = "") -> List[Dict[str, Any]]:
|
||
"""添加指定质量的固体试剂"""
|
||
vessel_id = vessel["id"]
|
||
debug_print(f"🧂 快速添加固体: {reagent} ({mass}) → {vessel_id}")
|
||
return generate_add_protocol(
|
||
G, vessel, reagent,
|
||
mass=mass,
|
||
event=event
|
||
)
|
||
|
||
def add_solid_moles(G: nx.DiGraph, vessel: dict, reagent: str, mol: str,
|
||
event: str = "") -> List[Dict[str, Any]]:
|
||
"""按摩尔数添加固体试剂"""
|
||
vessel_id = vessel["id"]
|
||
debug_print(f"🧬 按摩尔数添加固体: {reagent} ({mol}) → {vessel_id}")
|
||
return generate_add_protocol(
|
||
G, vessel, reagent,
|
||
mol=mol,
|
||
event=event
|
||
)
|
||
|
||
def add_dropwise_liquid(G: nx.DiGraph, vessel: dict, reagent: str, volume: Union[str, float],
|
||
time: Union[str, float] = "20 min", event: str = "") -> List[Dict[str, Any]]:
|
||
"""滴加液体试剂"""
|
||
vessel_id = vessel["id"]
|
||
debug_print(f"💧 滴加液体: {reagent} ({volume}) → {vessel_id} (用时: {time})")
|
||
return generate_add_protocol(
|
||
G, vessel, reagent,
|
||
volume=volume,
|
||
time=time,
|
||
rate_spec="dropwise",
|
||
event=event
|
||
)
|
||
|
||
def add_portionwise_solid(G: nx.DiGraph, vessel: dict, reagent: str, mass: Union[str, float],
|
||
time: Union[str, float] = "1 h", event: str = "") -> List[Dict[str, Any]]:
|
||
"""分批添加固体试剂"""
|
||
vessel_id = vessel["id"]
|
||
debug_print(f"🧂 分批添加固体: {reagent} ({mass}) → {vessel_id} (用时: {time})")
|
||
return generate_add_protocol(
|
||
G, vessel, reagent,
|
||
mass=mass,
|
||
time=time,
|
||
rate_spec="portionwise",
|
||
event=event
|
||
)
|
||
|
||
# 测试函数
|
||
def test_add_protocol():
|
||
"""测试添加协议的各种参数解析"""
|
||
print("=== ADD PROTOCOL 增强版测试 ===")
|
||
|
||
# 测试体积解析
|
||
debug_print("🧪 测试体积解析...")
|
||
volumes = ["2.7 mL", "2.67 mL", "?", 10.0, "1 L", "500 μL"]
|
||
for vol in volumes:
|
||
result = parse_volume_input(vol)
|
||
print(f"📏 体积解析: {vol} → {result}mL")
|
||
|
||
# 测试质量解析
|
||
debug_print("⚖️ 测试质量解析...")
|
||
masses = ["19.3 g", "4.5 g", 2.5, "500 mg", "1 kg"]
|
||
for mass in masses:
|
||
result = parse_mass_input(mass)
|
||
print(f"⚖️ 质量解析: {mass} → {result}g")
|
||
|
||
# 测试时间解析
|
||
debug_print("⏱️ 测试时间解析...")
|
||
times = ["1 h", "20 min", "30 s", 60.0, "?"]
|
||
for time in times:
|
||
result = parse_time_input(time)
|
||
print(f"⏱️ 时间解析: {time} → {result}s")
|
||
|
||
print("✅ 测试完成")
|
||
|
||
if __name__ == "__main__":
|
||
test_add_protocol() |