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729a0fcf0c
* add biomek.py demo implementation * 更新LiquidHandlerBiomek类，添加资源创建功能，优化协议创建方法，修复部分代码格式问题，更新YAML配置以支持新功能。 * Test * fix biomek success type * Convert LH action to biomek. * Update biomek.py * 注册表上报handle和schema (param input) * 修复biomek缺少的字段 * delete 's' * Remove warnings * Update biomek.py * Biomek test * Update biomek.py * 新增transfer_biomek的msg * New transfer_biomek * Updated transfer_biomek * 更新transfer_biomek的msg * 更新transfer_biomek的msg * 支持Biomek创建 * new action * fix key name typo * New parameter for biomek to run. * Refine * Update * new actions * new actions * 1 * registry * fix biomek startup add action handles * fix handles not as default entry * biomek_test.py biomek_test.py是最新的版本，运行它会生成complete_biomek_protocol.json * Update biomek.py * biomek_test.py * fix liquid_handler.biomek handles * host node新增resource add时间统计 create_resource新增handle bump version to 0.9.2 * 修正物料上传时间 改用biomek_test 增加ResultInfoEncoder 支持返回结果上传 * 正确发送return_info结果 * 同步执行状态信息 * 取消raiseValueError提示 * Update biomek_test.py * 0608 DONE * 同步了Biomek.py 现在应可用 * biomek switch back to non-test * temp disable initialize resource * Refine biomek * Refine copy issue * Refine --------- Co-authored-by: Junhan Chang <changjh@pku.edu.cn> Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com> Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>
303 lines
14 KiB
Python
303 lines
14 KiB
Python
import io
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import os
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import sys
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from pathlib import Path
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from typing import Any
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import yaml
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from unilabos.ros.msgs.message_converter import msg_converter_manager, ros_action_to_json_schema
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from unilabos.utils import logger
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from unilabos.utils.decorator import singleton
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DEFAULT_PATHS = [Path(__file__).absolute().parent]
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@singleton
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class Registry:
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def __init__(self, registry_paths=None):
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self.registry_paths = DEFAULT_PATHS.copy() # 使用copy避免修改默认值
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if registry_paths:
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self.registry_paths.extend(registry_paths)
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self.ResourceCreateFromOuter = self._replace_type_with_class(
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"ResourceCreateFromOuter", "host_node", f"动作 create_resource_detailed"
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)
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self.ResourceCreateFromOuterEasy = self._replace_type_with_class(
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"ResourceCreateFromOuterEasy", "host_node", f"动作 create_resource"
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)
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self.EmptyIn = self._replace_type_with_class("EmptyIn", "host_node", f"")
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self.device_type_registry = {}
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self.resource_type_registry = {}
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self._setup_called = False # 跟踪setup是否已调用
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# 其他状态变量
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# self.is_host_mode = False # 移至BasicConfig中
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def setup(self):
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# 检查是否已调用过setup
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if self._setup_called:
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logger.critical("[UniLab Registry] setup方法已被调用过，不允许多次调用")
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return
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from unilabos.app.web.utils.action_utils import get_yaml_from_goal_type
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self.device_type_registry.update(
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{
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"host_node": {
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"description": "UniLabOS主机节点",
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"class": {
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"module": "unilabos.ros.nodes.presets.host_node",
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"type": "python",
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"status_types": {},
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"action_value_mappings": {
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"create_resource_detailed": {
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"type": self.ResourceCreateFromOuter,
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"goal": {
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"resources": "resources",
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"device_ids": "device_ids",
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"bind_parent_ids": "bind_parent_ids",
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"bind_locations": "bind_locations",
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"other_calling_params": "other_calling_params",
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},
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"feedback": {},
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"result": {"success": "success"},
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"schema": ros_action_to_json_schema(self.ResourceCreateFromOuter),
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"goal_default": yaml.safe_load(
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io.StringIO(get_yaml_from_goal_type(self.ResourceCreateFromOuter.Goal))
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),
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"handles": {},
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},
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"create_resource": {
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"type": self.ResourceCreateFromOuterEasy,
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"goal": {
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"res_id": "res_id",
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"class_name": "class_name",
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"parent": "parent",
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"device_id": "device_id",
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"bind_locations": "bind_locations",
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"liquid_input_slot": "liquid_input_slot[]",
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"liquid_type": "liquid_type[]",
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"liquid_volume": "liquid_volume[]",
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"slot_on_deck": "slot_on_deck",
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},
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"feedback": {},
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"result": {"success": "success"},
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"schema": ros_action_to_json_schema(self.ResourceCreateFromOuterEasy),
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"goal_default": yaml.safe_load(
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io.StringIO(get_yaml_from_goal_type(self.ResourceCreateFromOuterEasy.Goal))
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),
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"handles": {
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"output": [{
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"handler_key": "Labware",
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"label": "Labware",
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"data_type": "resource",
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"data_source": "handle",
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"data_key": "liquid"
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}]
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},
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},
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"test_latency": {
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"type": self.EmptyIn,
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"goal": {},
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"feedback": {},
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"result": {"latency_ms": "latency_ms", "time_diff_ms": "time_diff_ms"},
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"schema": ros_action_to_json_schema(self.EmptyIn),
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"goal_default": {},
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"handles": {},
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},
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},
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},
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"icon": "icon_device.webp",
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"registry_type": "device",
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"handles": [],
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"init_param_schema": {},
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"schema": {"properties": {}, "additionalProperties": False, "type": "object"},
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"file_path": "/",
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}
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}
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)
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logger.debug(f"[UniLab Registry] ----------Setup----------")
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self.registry_paths = [Path(path).absolute() for path in self.registry_paths]
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for i, path in enumerate(self.registry_paths):
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sys_path = path.parent
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logger.debug(f"[UniLab Registry] Path {i+1}/{len(self.registry_paths)}: {sys_path}")
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sys.path.append(str(sys_path))
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self.load_device_types(path)
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self.load_resource_types(path)
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logger.info("[UniLab Registry] 注册表设置完成")
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# 标记setup已被调用
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self._setup_called = True
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def load_resource_types(self, path: os.PathLike):
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abs_path = Path(path).absolute()
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resource_path = abs_path / "resources"
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files = list(resource_path.glob("*/*.yaml"))
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logger.debug(f"[UniLab Registry] resources: {resource_path.exists()}, total: {len(files)}")
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current_resource_number = len(self.resource_type_registry) + 1
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for i, file in enumerate(files):
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data = yaml.safe_load(open(file, encoding="utf-8"))
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if data:
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# 为每个资源添加文件路径信息
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for resource_id, resource_info in data.items():
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resource_info["file_path"] = str(file.absolute()).replace("\\", "/")
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if "description" not in resource_info:
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resource_info["description"] = ""
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if "icon" not in resource_info:
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resource_info["icon"] = ""
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if "handles" not in resource_info:
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resource_info["handles"] = []
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if "init_param_schema" not in resource_info:
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resource_info["init_param_schema"] = {}
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resource_info["registry_type"] = "resource"
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self.resource_type_registry.update(data)
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logger.debug(
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f"[UniLab Registry] Resource-{current_resource_number} File-{i+1}/{len(files)} "
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+ f"Add {list(data.keys())}"
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)
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current_resource_number += 1
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else:
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logger.debug(f"[UniLab Registry] Res File-{i+1}/{len(files)} Not Valid YAML File: {file.absolute()}")
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def _replace_type_with_class(self, type_name: str, device_id: str, field_name: str) -> Any:
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"""
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将类型名称替换为实际的类对象
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Args:
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type_name: 类型名称
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device_id: 设备ID，用于错误信息
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field_name: 字段名称，用于错误信息
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Returns:
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找到的类对象或原始字符串
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Raises:
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SystemExit: 如果找不到类型则终止程序
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"""
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# 如果类型名为空，跳过替换
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if not type_name or type_name == "":
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logger.warning(f"[UniLab Registry] 设备 {device_id} 的 {field_name} 类型为空，跳过替换")
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return type_name
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if "." in type_name:
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type_class = msg_converter_manager.get_class(type_name)
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else:
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type_class = msg_converter_manager.search_class(type_name)
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if type_class:
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return type_class
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else:
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logger.error(f"[UniLab Registry] 无法找到类型 '{type_name}' 用于设备 {device_id} 的 {field_name}")
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sys.exit(1)
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def load_device_types(self, path: os.PathLike):
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abs_path = Path(path).absolute()
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devices_path = abs_path / "devices"
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device_comms_path = abs_path / "device_comms"
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files = list(devices_path.glob("*.yaml")) + list(device_comms_path.glob("*.yaml"))
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logger.debug(
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f"[UniLab Registry] devices: {devices_path.exists()}, device_comms: {device_comms_path.exists()}, "
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+ f"total: {len(files)}"
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)
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current_device_number = len(self.device_type_registry) + 1
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from unilabos.app.web.utils.action_utils import get_yaml_from_goal_type
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for i, file in enumerate(files):
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data = yaml.safe_load(open(file, encoding="utf-8"))
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if data:
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# 在添加到注册表前处理类型替换
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for device_id, device_config in data.items():
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# 添加文件路径信息 - 使用规范化的完整文件路径
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device_config["file_path"] = str(file.absolute()).replace("\\", "/")
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if "description" not in device_config:
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device_config["description"] = ""
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if "icon" not in device_config:
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device_config["icon"] = ""
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if "handles" not in device_config:
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device_config["handles"] = []
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if "init_param_schema" not in device_config:
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device_config["init_param_schema"] = {}
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device_config["registry_type"] = "device"
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if "class" in device_config:
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# 处理状态类型
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if "status_types" in device_config["class"]:
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for status_name, status_type in device_config["class"]["status_types"].items():
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device_config["class"]["status_types"][status_name] = self._replace_type_with_class(
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status_type, device_id, f"状态 {status_name}"
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)
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# 处理动作值映射
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if "action_value_mappings" in device_config["class"]:
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for action_name, action_config in device_config["class"]["action_value_mappings"].items():
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if "handles" not in action_config:
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action_config["handles"] = []
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if "type" in action_config:
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action_config["type"] = self._replace_type_with_class(
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action_config["type"], device_id, f"动作 {action_name}"
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)
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if action_config["type"] is not None:
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action_config["goal_default"] = yaml.safe_load(
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io.StringIO(get_yaml_from_goal_type(action_config["type"].Goal))
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)
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action_config["schema"] = ros_action_to_json_schema(action_config["type"])
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else:
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logger.warning(
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f"[UniLab Registry] 设备 {device_id} 的动作 {action_name} 类型为空，跳过替换"
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)
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self.device_type_registry.update(data)
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for device_id in data.keys():
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logger.debug(
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f"[UniLab Registry] Device-{current_device_number} File-{i+1}/{len(files)} Add {device_id} "
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+ f"[{data[device_id].get('name', '未命名设备')}]"
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)
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current_device_number += 1
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else:
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logger.debug(
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f"[UniLab Registry] Device File-{i+1}/{len(files)} Not Valid YAML File: {file.absolute()}"
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)
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def obtain_registry_device_info(self):
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devices = []
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for device_id, device_info in self.device_type_registry.items():
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msg = {"id": device_id, **device_info}
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devices.append(msg)
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return devices
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def obtain_registry_resource_info(self):
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resources = []
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for resource_id, resource_info in self.resource_type_registry.items():
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msg = {"id": resource_id, **resource_info}
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resources.append(msg)
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return resources
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# 全局单例实例
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lab_registry = Registry()
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def build_registry(registry_paths=None):
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"""
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构建或获取Registry单例实例
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Args:
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registry_paths: 额外的注册表路径列表
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Returns:
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Registry实例
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"""
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logger.info("[UniLab Registry] 构建注册表实例")
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# 由于使用了单例，这里不需要重新创建实例
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global lab_registry
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# 如果有额外路径，添加到registry_paths
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if registry_paths:
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current_paths = lab_registry.registry_paths.copy()
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# 检查是否有新路径需要添加
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for path in registry_paths:
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if path not in current_paths:
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lab_registry.registry_paths.append(path)
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# 初始化注册表
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lab_registry.setup()
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return lab_registry
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