mirror of
https://github.com/dptech-corp/Uni-Lab-OS.git
synced 2025-12-14 13:14:39 +00:00
7c440d10ab
* Fix ResourceTreeSet load error * Raise error when using unsupported type to create ResourceTreeSet * Fix children key error * Fix children key error * Fix workstation resource not tracking * Fix workstation deck & children resource dupe * Fix workstation deck & children resource dupe * Fix multiple resource error * Fix resource tree update * Fix resource tree update * Force confirm uuid * Tip more error log * Refactor Bioyond workstation and experiment workflow (#105) Refactored the Bioyond workstation classes to improve parameter handling and workflow management. Updated experiment.py to use BioyondReactionStation with deck and material mappings, and enhanced workflow step parameter mapping and execution logic. Adjusted JSON experiment configs, improved workflow sequence handling, and added UUID assignment to PLR materials. Removed unused station_config and material cache logic, and added detailed docstrings and debug output for workflow methods. * Fix resource get. Fix resource parent not found. Mapping uuid for all resources. * mount parent uuid * Add logging configuration based on BasicConfig in main function * fix workstation node error * fix workstation node error * Update boot example * temp fix for resource get * temp fix for resource get * provide error info when cant find plr type * pack repo info * fix to plr type error * fix to plr type error * Update regular container method * support no size init * fix comprehensive_station.json * fix comprehensive_station.json * fix type conversion * fix state loading for regular container * Update deploy-docs.yml * Update deploy-docs.yml --------- Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>
1171 lines
34 KiB
JSON
1171 lines
34 KiB
JSON
{
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"nodes": [
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{
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"id": "OrganicSynthesisStation",
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"name": "有机化学流程综合测试工作站",
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"children": [
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{
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{
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{
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{
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"parent": "OrganicSynthesisStation",
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}
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{
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"id": "solenoid_valve_1",
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"name": "电磁阀1",
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"children": [],
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"parent": "OrganicSynthesisStation",
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"type": "device",
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"class": "virtual_solenoid_valve",
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"position": {
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"x": 700,
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"y": 200,
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"z": 0
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},
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"config": {
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"voltage": 12.0,
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"response_time": 0.1
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},
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"data": {
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"valve_state": "Closed",
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"is_open": false
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}
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},
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{
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"id": "solenoid_valve_2",
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"name": "电磁阀2",
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"children": [],
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"parent": "OrganicSynthesisStation",
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"type": "device",
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"class": "virtual_solenoid_valve",
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"position": {
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"x": 700,
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"y": 150,
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"z": 0
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},
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"config": {
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"voltage": 12.0,
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"response_time": 0.1
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},
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"data": {
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"valve_state": "Closed",
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"is_open": false
|
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}
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},
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{
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"id": "solenoid_valve_3",
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"name": "氢气电磁阀",
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"children": [],
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"parent": "OrganicSynthesisStation",
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"type": "device",
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"class": "virtual_solenoid_valve",
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"position": {
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"x": 450,
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"y": 400,
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"z": 0
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},
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"config": {
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"voltage": 12.0,
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"response_time": 0.1,
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"gas_compatible": true
|
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},
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"data": {
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"valve_state": "Closed",
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"is_open": false
|
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}
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},
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{
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"id": "vacuum_pump_1",
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"name": "真空泵",
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"children": [],
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"parent": "OrganicSynthesisStation",
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"type": "device",
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"class": "virtual_vacuum_pump",
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"position": {
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"x": 650,
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"y": 200,
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"z": 0
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},
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"config": {
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"max_vacuum": 0.1,
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"pump_rate": 50.0
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},
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"data": {
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"status": "Off",
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"current_vacuum": 1.0
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}
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},
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{
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"id": "gas_source_1",
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"name": "气源",
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"children": [],
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"parent": "OrganicSynthesisStation",
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"type": "device",
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"class": "virtual_gas_source",
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"position": {
|
|
"x": 650,
|
|
"y": 150,
|
|
"z": 0
|
|
},
|
|
"config": {},
|
|
"data": {
|
|
"gas_type": "nitrogen",
|
|
"max_pressure": 5.0
|
|
}
|
|
},
|
|
{
|
|
"id": "h2_gas_source",
|
|
"name": "氢气气源",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "device",
|
|
"class": "virtual_gas_source",
|
|
"position": {
|
|
"x": 500,
|
|
"y": 350,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"max_pressure": 10.0,
|
|
"gas_type": "hydrogen"
|
|
},
|
|
"data": {
|
|
"gas_type": "hydrogen",
|
|
"max_pressure": 10.0,
|
|
"current_pressure": 0.0,
|
|
"status": "OFF"
|
|
}
|
|
},
|
|
{
|
|
"id": "filter_1",
|
|
"name": "过滤器",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "device",
|
|
"class": "virtual_filter",
|
|
"position": {
|
|
"x": 900,
|
|
"y": 400,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"filter_type": "membrane",
|
|
"max_pressure": 5.0
|
|
},
|
|
"data": {
|
|
"status": "Ready",
|
|
"pressure": 0.0
|
|
}
|
|
},
|
|
{
|
|
"id": "column_1",
|
|
"name": "洗脱柱",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "device",
|
|
"class": "virtual_column",
|
|
"position": {
|
|
"x": 950,
|
|
"y": 400,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"column_type": "silica_gel",
|
|
"length": 30.0,
|
|
"diameter": 2.5
|
|
},
|
|
"data": {
|
|
"status": "Ready",
|
|
"loaded": false
|
|
}
|
|
},
|
|
{
|
|
"id": "separator_1",
|
|
"name": "分液器",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "device",
|
|
"class": "virtual_separator",
|
|
"position": {
|
|
"x": 1000,
|
|
"y": 450,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"volume": 250.0,
|
|
"has_phases": true
|
|
},
|
|
"data": {
|
|
"status": "Ready",
|
|
"phase_separation": false
|
|
}
|
|
},
|
|
{
|
|
"id": "collection_bottle_1",
|
|
"name": "接收瓶1",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "container",
|
|
"class": "container",
|
|
"position": {
|
|
"x": 900,
|
|
"y": 500,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"max_volume": 250.0,
|
|
"type": "RegularContainer",
|
|
"category": "container",
|
|
"size_x": 900,
|
|
"size_y": 500,
|
|
"size_z": 0
|
|
},
|
|
"data": {
|
|
"liquids": [],
|
|
"pending_liquids": []
|
|
}
|
|
},
|
|
{
|
|
"id": "collection_bottle_2",
|
|
"name": "接收瓶2",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "container",
|
|
"class": "container",
|
|
"position": {
|
|
"x": 950,
|
|
"y": 500,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"max_volume": 250.0,
|
|
"type": "RegularContainer",
|
|
"category": "container",
|
|
"size_x": 950,
|
|
"size_y": 500,
|
|
"size_z": 0
|
|
},
|
|
"data": {
|
|
"liquids": [],
|
|
"pending_liquids": []
|
|
}
|
|
},
|
|
{
|
|
"id": "collection_bottle_3",
|
|
"name": "接收瓶3",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "container",
|
|
"class": "container",
|
|
"position": {
|
|
"x": 1050,
|
|
"y": 500,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"max_volume": 250.0,
|
|
"type": "RegularContainer",
|
|
"category": "container",
|
|
"size_x": 1050,
|
|
"size_y": 500,
|
|
"size_z": 0
|
|
},
|
|
"data": {
|
|
"liquids": [],
|
|
"pending_liquids": []
|
|
}
|
|
},
|
|
{
|
|
"id": "solid_dispenser_1",
|
|
"name": "固体粉末加样器",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "device",
|
|
"class": "virtual_solid_dispenser",
|
|
"position": {
|
|
"x": 600,
|
|
"y": 300,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"max_capacity": 100.0,
|
|
"precision": 0.001
|
|
},
|
|
"data": {
|
|
"status": "Ready",
|
|
"current_reagent": "",
|
|
"dispensed_amount": 0.0,
|
|
"total_operations": 0
|
|
}
|
|
},
|
|
{
|
|
"id": "solid_reagent_bottle_1",
|
|
"name": "固体试剂瓶1-氯化钠",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "container",
|
|
"class": "container",
|
|
"position": {
|
|
"x": 550,
|
|
"y": 250,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"max_volume": 500.0,
|
|
"size_x": 550,
|
|
"size_y": 250,
|
|
"size_z": 0,
|
|
"type": "RegularContainer",
|
|
"category": "container",
|
|
"reagent": "sodium_chloride",
|
|
"physical_state": "solid"
|
|
},
|
|
"data": {
|
|
"current_mass": 500.0,
|
|
"reagent_name": "sodium_chloride",
|
|
"physical_state": "solid"
|
|
}
|
|
},
|
|
{
|
|
"id": "solid_reagent_bottle_2",
|
|
"name": "固体试剂瓶2-碳酸钠",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "container",
|
|
"class": "container",
|
|
"position": {
|
|
"x": 600,
|
|
"y": 250,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"volume": 500.0,
|
|
"size_x": 600,
|
|
"size_y": 250,
|
|
"size_z": 0,
|
|
"type": "RegularContainer",
|
|
"category": "container",
|
|
"reagent": "sodium_carbonate",
|
|
"physical_state": "solid"
|
|
},
|
|
"data": {
|
|
"current_mass": 500.0,
|
|
"reagent_name": "sodium_carbonate",
|
|
"physical_state": "solid"
|
|
}
|
|
},
|
|
{
|
|
"id": "solid_reagent_bottle_3",
|
|
"name": "固体试剂瓶3-氯化镁",
|
|
"children": [],
|
|
"parent": "OrganicSynthesisStation",
|
|
"type": "container",
|
|
"class": "container",
|
|
"position": {
|
|
"x": 650,
|
|
"y": 250,
|
|
"z": 0
|
|
},
|
|
"config": {
|
|
"volume": 500.0,
|
|
"size_x": 650,
|
|
"size_y": 250,
|
|
"size_z": 0,
|
|
"type": "RegularContainer",
|
|
"category": "container",
|
|
"reagent": "magnesium_chloride",
|
|
"physical_state": "solid"
|
|
},
|
|
"data": {
|
|
"current_mass": 500.0,
|
|
"reagent_name": "magnesium_chloride",
|
|
"physical_state": "solid"
|
|
}
|
|
}
|
|
],
|
|
"links": [
|
|
{
|
|
"id": "link_pump1_valve1",
|
|
"source": "transfer_pump_1",
|
|
"target": "multiway_valve_1",
|
|
"type": "fluid",
|
|
"port": {
|
|
"transfer_pump_1": "transferpump",
|
|
"multiway_valve_1": "transferpump"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve1_reagent1",
|
|
"source": "multiway_valve_1",
|
|
"target": "reagent_bottle_1",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_1": "1",
|
|
"reagent_bottle_1": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve1_reagent2",
|
|
"source": "multiway_valve_1",
|
|
"target": "reagent_bottle_2",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_1": "2",
|
|
"reagent_bottle_2": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve1_reagent3",
|
|
"source": "multiway_valve_1",
|
|
"target": "reagent_bottle_3",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_1": "3",
|
|
"reagent_bottle_3": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve1_centrifuge",
|
|
"source": "multiway_valve_1",
|
|
"target": "centrifuge_1",
|
|
"type": "transport",
|
|
"port": {
|
|
"multiway_valve_1": "4",
|
|
"centrifuge_1": "centrifuge"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve1_rotavap",
|
|
"source": "multiway_valve_1",
|
|
"target": "rotavap_1",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_1": "5",
|
|
"rotavap_1": "samplein"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve1_reactor",
|
|
"source": "multiway_valve_1",
|
|
"target": "main_reactor",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_1": "6",
|
|
"main_reactor": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve1_waste1",
|
|
"source": "multiway_valve_1",
|
|
"target": "waste_bottle_1",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_1": "7",
|
|
"waste_bottle_1": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve1_valve2",
|
|
"source": "multiway_valve_1",
|
|
"target": "multiway_valve_2",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_1": "8",
|
|
"multiway_valve_2": "1"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_pump2_valve2",
|
|
"source": "transfer_pump_2",
|
|
"target": "multiway_valve_2",
|
|
"type": "fluid",
|
|
"port": {
|
|
"transfer_pump_2": "transferpump",
|
|
"multiway_valve_2": "transferpump"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve2_solenoid1",
|
|
"source": "multiway_valve_2",
|
|
"target": "solenoid_valve_1",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_2": "2",
|
|
"solenoid_valve_1": "in"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_vacuum_solenoid1",
|
|
"source": "vacuum_pump_1",
|
|
"target": "solenoid_valve_1",
|
|
"type": "fluid",
|
|
"port": {
|
|
"vacuum_pump_1": "vacuumpump",
|
|
"solenoid_valve_1": "out"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve2_solenoid2",
|
|
"source": "multiway_valve_2",
|
|
"target": "solenoid_valve_2",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_2": "3",
|
|
"solenoid_valve_2": "out"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_gas_solenoid2",
|
|
"source": "gas_source_1",
|
|
"target": "solenoid_valve_2",
|
|
"type": "fluid",
|
|
"port": {
|
|
"gas_source_1": "gassource",
|
|
"solenoid_valve_2": "in"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve2_filter",
|
|
"source": "multiway_valve_2",
|
|
"target": "filter_1",
|
|
"type": "transport",
|
|
"port": {
|
|
"multiway_valve_2": "4",
|
|
"filter_1": "filterin"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve2_column",
|
|
"source": "multiway_valve_2",
|
|
"target": "column_1",
|
|
"type": "transport",
|
|
"port": {
|
|
"multiway_valve_2": "5",
|
|
"column_1": "columnin"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_column_collection2",
|
|
"source": "column_1",
|
|
"target": "collection_bottle_2",
|
|
"type": "transport",
|
|
"port": {
|
|
"column_1": "columnout",
|
|
"collection_bottle_2": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve2_separator",
|
|
"source": "multiway_valve_2",
|
|
"target": "separator_1",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_2": "6",
|
|
"separator_1": "separatorin"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_separator_collection3",
|
|
"source": "separator_1",
|
|
"target": "collection_bottle_3",
|
|
"type": "fluid",
|
|
"port": {
|
|
"separator_1": "bottomphaseout",
|
|
"collection_bottle_3": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve2_reagent4",
|
|
"source": "multiway_valve_2",
|
|
"target": "reagent_bottle_4",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_2": "7",
|
|
"reagent_bottle_4": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve2_reagent5",
|
|
"source": "multiway_valve_2",
|
|
"target": "reagent_bottle_5",
|
|
"type": "fluid",
|
|
"port": {
|
|
"multiway_valve_2": "8",
|
|
"reagent_bottle_5": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "mech_stirrer_reactor",
|
|
"source": "stirrer_1",
|
|
"target": "main_reactor",
|
|
"type": "mechanical",
|
|
"port": {
|
|
"stirrer_1": "stirrer",
|
|
"main_reactor": "bind"
|
|
}
|
|
},
|
|
{
|
|
"id": "thermal_heater_reactor",
|
|
"source": "heater_1",
|
|
"target": "main_reactor",
|
|
"type": "mechanical",
|
|
"port": {
|
|
"heater_1": "heatchill",
|
|
"main_reactor": "bind"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_separator_waste2",
|
|
"source": "separator_1",
|
|
"target": "waste_bottle_2",
|
|
"type": "fluid",
|
|
"port": {
|
|
"separator_1": "topphaseout",
|
|
"waste_bottle_2": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "mech_stirrer2_separator",
|
|
"source": "stirrer_2",
|
|
"target": "separator_1",
|
|
"type": "mechanical",
|
|
"port": {
|
|
"stirrer_2": "stirrer",
|
|
"separator_1": "bind"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_filter_filtrate_to_collection1",
|
|
"source": "filter_1",
|
|
"target": "collection_bottle_1",
|
|
"type": "transport",
|
|
"port": {
|
|
"filter_1": "filtrateout",
|
|
"collection_bottle_1": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_filter_retentate_to_waste1",
|
|
"source": "filter_1",
|
|
"target": "waste_bottle_1",
|
|
"type": "transport",
|
|
"port": {
|
|
"filter_1": "retentateout",
|
|
"waste_bottle_1": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_h2_gas_to_valve3",
|
|
"source": "h2_gas_source",
|
|
"target": "solenoid_valve_3",
|
|
"type": "fluid",
|
|
"port": {
|
|
"h2_gas_source": "gassource",
|
|
"solenoid_valve_3": "in"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_valve3_to_reactor",
|
|
"source": "solenoid_valve_3",
|
|
"target": "main_reactor",
|
|
"type": "fluid",
|
|
"port": {
|
|
"solenoid_valve_3": "out",
|
|
"main_reactor": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_solid_dispenser_to_reactor",
|
|
"source": "solid_dispenser_1",
|
|
"target": "main_reactor",
|
|
"type": "resource",
|
|
"port": {
|
|
"solid_dispenser_1": "SolidOut",
|
|
"main_reactor": "top"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_solid_bottle1_to_dispenser",
|
|
"source": "solid_reagent_bottle_1",
|
|
"target": "solid_dispenser_1",
|
|
"type": "resource",
|
|
"port": {
|
|
"solid_reagent_bottle_1": "bottom",
|
|
"solid_dispenser_1": "SolidIn"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_solid_bottle2_to_dispenser",
|
|
"source": "solid_reagent_bottle_2",
|
|
"target": "solid_dispenser_1",
|
|
"type": "resource",
|
|
"port": {
|
|
"solid_reagent_bottle_2": "bottom",
|
|
"solid_dispenser_1": "SolidIn"
|
|
}
|
|
},
|
|
{
|
|
"id": "link_solid_bottle3_to_dispenser",
|
|
"source": "solid_reagent_bottle_3",
|
|
"target": "solid_dispenser_1",
|
|
"type": "resource",
|
|
"port": {
|
|
"solid_reagent_bottle_3": "bottom",
|
|
"solid_dispenser_1": "SolidIn"
|
|
}
|
|
}
|
|
]
|
|
} |