mirror of
https://github.com/dptech-corp/Uni-Lab-OS.git
synced 2025-12-14 13:14:39 +00:00
7c440d10ab
* Fix ResourceTreeSet load error * Raise error when using unsupported type to create ResourceTreeSet * Fix children key error * Fix children key error * Fix workstation resource not tracking * Fix workstation deck & children resource dupe * Fix workstation deck & children resource dupe * Fix multiple resource error * Fix resource tree update * Fix resource tree update * Force confirm uuid * Tip more error log * Refactor Bioyond workstation and experiment workflow (#105) Refactored the Bioyond workstation classes to improve parameter handling and workflow management. Updated experiment.py to use BioyondReactionStation with deck and material mappings, and enhanced workflow step parameter mapping and execution logic. Adjusted JSON experiment configs, improved workflow sequence handling, and added UUID assignment to PLR materials. Removed unused station_config and material cache logic, and added detailed docstrings and debug output for workflow methods. * Fix resource get. Fix resource parent not found. Mapping uuid for all resources. * mount parent uuid * Add logging configuration based on BasicConfig in main function * fix workstation node error * fix workstation node error * Update boot example * temp fix for resource get * temp fix for resource get * provide error info when cant find plr type * pack repo info * fix to plr type error * fix to plr type error * Update regular container method * support no size init * fix comprehensive_station.json * fix comprehensive_station.json * fix type conversion * fix state loading for regular container * Update deploy-docs.yml * Update deploy-docs.yml --------- Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>
401 lines
12 KiB
Python
401 lines
12 KiB
Python
"""
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实验流程主程序
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"""
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import json
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from reaction_station import BioyondReactionStation
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from config import API_CONFIG, WORKFLOW_MAPPINGS, DECK_CONFIG, MATERIAL_TYPE_MAPPINGS
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def run_experiment():
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"""运行实验流程"""
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# 初始化Bioyond客户端
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config = {
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**API_CONFIG,
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"workflow_mappings": WORKFLOW_MAPPINGS,
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"material_type_mappings": MATERIAL_TYPE_MAPPINGS
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}
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# 创建BioyondReactionStation实例，传入deck配置
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Bioyond = BioyondReactionStation(
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config=config,
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deck=DECK_CONFIG
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)
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print("\n============= 多工作流参数测试（简化接口+材料缓存）=============")
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# 显示可用的材料名称（前20个）
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available_materials = Bioyond.hardware_interface.get_available_materials()
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print(f"可用材料名称（前20个）: {available_materials[:20]}")
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print(f"总共有 {len(available_materials)} 个材料可用\n")
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# 1. 反应器放入
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print("1. 添加反应器放入工作流，带参数...")
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Bioyond.reactor_taken_in(
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assign_material_name="BTDA-DD",
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cutoff="10000",
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temperature="-10"
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)
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# 2. 液体投料-烧杯 (第一个)
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print("2. 添加液体投料-烧杯，带参数...")
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Bioyond.liquid_feeding_beaker(
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volume="34768.7",
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assign_material_name="ODA",
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time="0",
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torque_variation="1",
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titrationType="1",
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temperature=-10
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)
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# 3. 液体投料-烧杯 (第二个)
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print("3. 添加液体投料-烧杯，带参数...")
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Bioyond.liquid_feeding_beaker(
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volume="34080.9",
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assign_material_name="MPDA",
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time="5",
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torque_variation="2",
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titrationType="1",
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temperature=0
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)
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# 4. 液体投料-小瓶非滴定
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print("4. 添加液体投料-小瓶非滴定，带参数...")
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Bioyond.liquid_feeding_vials_non_titration(
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volumeFormula="639.5",
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assign_material_name="SIDA",
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titration_type="1",
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time="0",
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torque_variation="1",
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temperature=-10
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)
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# 5. 液体投料溶剂
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print("5. 添加液体投料溶剂，带参数...")
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Bioyond.liquid_feeding_solvents(
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assign_material_name="NMP",
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volume="19000",
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titration_type="1",
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time="5",
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torque_variation="2",
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temperature=-10
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)
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# 6-8. 固体进料小瓶 (三个)
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print("6. 添加固体进料小瓶，带参数...")
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Bioyond.solid_feeding_vials(
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material_id="3",
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time="180",
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torque_variation="2",
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assign_material_name="BTDA1",
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temperature=-10.00
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)
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#二杆，样品版90
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print("7. 添加固体进料小瓶，带参数...")
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Bioyond.solid_feeding_vials(
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material_id="3",
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time="180",
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torque_variation="2",
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assign_material_name="BTDA2",
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temperature=25.00
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)
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#二杆，样品版90
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print("8. 添加固体进料小瓶，带参数...")
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Bioyond.solid_feeding_vials(
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material_id="3",
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time="480",
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torque_variation="2",
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assign_material_name="BTDA3",
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temperature=25.00
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)
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# 液体投料滴定（第一个）
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print("9. 添加液体投料滴定，带参数...") # ODPA
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Bioyond.liquid_feeding_titration(
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volume_formula="{{6-0-5}}+{{7-0-5}}+{{8-0-5}}",
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assign_material_name="BTDA-DD",
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titration_type="1",
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time="360",
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torque_variation="2",
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temperature="25.00"
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)
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# 液体投料滴定（第二个）
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print("10. 添加液体投料滴定，带参数...") # ODPA
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Bioyond.liquid_feeding_titration(
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volume_formula="500",
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assign_material_name="BTDA-DD",
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titration_type="1",
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time="360",
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torque_variation="2",
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temperature="25.00"
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)
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# 液体投料滴定（第三个）
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print("11. 添加液体投料滴定，带参数...") # ODPA
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Bioyond.liquid_feeding_titration(
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volume_formula="500",
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assign_material_name="BTDA-DD",
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titration_type="1",
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time="360",
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torque_variation="2",
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temperature="25.00"
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)
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print("12. 添加液体投料滴定，带参数...") # ODPA
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Bioyond.liquid_feeding_titration(
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volume_formula="500",
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assign_material_name="BTDA-DD",
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titration_type="1",
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time="360",
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torque_variation="2",
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temperature="25.00"
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)
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print("13. 添加液体投料滴定，带参数...") # ODPA
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Bioyond.liquid_feeding_titration(
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volume_formula="500",
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assign_material_name="BTDA-DD",
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titration_type="1",
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time="360",
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torque_variation="2",
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temperature="25.00"
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)
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print("14. 添加液体投料滴定，带参数...") # ODPA
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Bioyond.liquid_feeding_titration(
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volume_formula="500",
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assign_material_name="BTDA-DD",
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titration_type="1",
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time="360",
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torque_variation="2",
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temperature="25.00"
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)
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print("15. 添加液体投料溶剂，带参数...")
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Bioyond.liquid_feeding_solvents(
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assign_material_name="PGME",
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volume="16894.6",
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titration_type="1",
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time="360",
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torque_variation="2",
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temperature=25.00
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)
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# 16. 反应器取出
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print("16. 添加反应器取出工作流...")
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Bioyond.reactor_taken_out()
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# 显示当前工作流序列
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sequence = Bioyond.get_workflow_sequence()
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print("\n当前工作流执行顺序:")
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print(sequence)
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# 执行process_and_execute_workflow，合并工作流并创建任务
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print("\n4. 执行process_and_execute_workflow...")
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result = Bioyond.process_and_execute_workflow(
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workflow_name="test3_8",
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task_name="实验3_8"
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)
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# 显示执行结果
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print("\n5. 执行结果:")
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if isinstance(result, str):
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try:
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result_dict = json.loads(result)
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if result_dict.get("success"):
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print("任务创建成功!")
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print(f"- 工作流: {result_dict.get('workflow', {}).get('name')}")
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print(f"- 工作流ID: {result_dict.get('workflow', {}).get('id')}")
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print(f"- 任务结果: {result_dict.get('task')}")
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else:
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print(f"任务创建失败: {result_dict.get('error')}")
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except:
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print(f"结果解析失败: {result}")
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else:
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if result.get("success"):
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print("任务创建成功!")
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print(f"- 工作流: {result.get('workflow', {}).get('name')}")
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print(f"- 工作流ID: {result.get('workflow', {}).get('id')}")
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print(f"- 任务结果: {result.get('task')}")
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else:
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print(f"任务创建失败: {result.get('error')}")
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# 可选：启动调度器
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# Bioyond.scheduler_start()
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return Bioyond
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def prepare_materials(bioyond):
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"""准备实验材料（可选）"""
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# 样品板材料数据定义
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material_data_yp_1 = {
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"typeId": "3a142339-80de-8f25-6093-1b1b1b6c322e",
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"name": "样品板-1",
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"unit": "个",
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"quantity": 1,
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"details": [
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "BPDA-DD-1",
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"quantity": 1,
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"x": 1,
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"y": 1,
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"Parameters": "{\"molecular\": 1}"
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},
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "PEPA",
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"quantity": 1,
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"x": 1,
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"y": 2,
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"Parameters": "{\"molecular\": 1}"
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},
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "BPDA-DD-2",
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"quantity": 1,
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"x": 1,
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"y": 3,
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"Parameters": "{\"molecular\": 1}"
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},
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "BPDA-1",
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"quantity": 1,
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"x": 2,
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"y": 1,
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"Parameters": "{\"molecular\": 1}"
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},
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "PMDA",
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"quantity": 1,
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"x": 2,
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"y": 2,
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"Parameters": "{\"molecular\": 1}"
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},
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "BPDA-2",
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"quantity": 1,
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"x": 2,
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"y": 3,
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"Parameters": "{\"molecular\": 1}"
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}
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],
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"Parameters": "{}"
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}
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material_data_yp_2 = {
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"typeId": "3a142339-80de-8f25-6093-1b1b1b6c322e",
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"name": "样品板-2",
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"unit": "个",
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"quantity": 1,
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"details": [
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "BPDA-DD",
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"quantity": 1,
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"x": 1,
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"y": 1,
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"Parameters": "{\"molecular\": 1}"
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},
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "SIDA",
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"quantity": 1,
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"x": 1,
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"y": 2,
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"Parameters": "{\"molecular\": 1}"
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},
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "BTDA-1",
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"quantity": 1,
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"x": 2,
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"y": 1,
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"Parameters": "{\"molecular\": 1}"
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},
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "BTDA-2",
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"quantity": 1,
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"x": 2,
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"y": 2,
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"Parameters": "{\"molecular\": 1}"
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},
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{
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"typeId": "3a14233a-84a3-088d-6676-7cb4acd57c64",
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"name": "BTDA-3",
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"quantity": 1,
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"x": 2,
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"y": 3,
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"Parameters": "{\"molecular\": 1}"
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}
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],
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"Parameters": "{}"
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}
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# 烧杯材料数据定义
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beaker_materials = [
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{
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"typeId": "3a14233b-f0a9-ba84-eaa9-0d4718b361b6",
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"name": "PDA-1",
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"unit": "微升",
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"quantity": 1,
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"parameters": "{\"DeviceMaterialType\":\"NMP\"}"
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},
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{
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"typeId": "3a14233b-f0a9-ba84-eaa9-0d4718b361b6",
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"name": "TFDB",
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"unit": "微升",
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"quantity": 1,
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"parameters": "{\"DeviceMaterialType\":\"NMP\"}"
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},
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{
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"typeId": "3a14233b-f0a9-ba84-eaa9-0d4718b361b6",
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"name": "ODA",
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"unit": "微升",
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"quantity": 1,
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"parameters": "{\"DeviceMaterialType\":\"NMP\"}"
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},
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{
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"typeId": "3a14233b-f0a9-ba84-eaa9-0d4718b361b6",
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"name": "MPDA",
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"unit": "微升",
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"quantity": 1,
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"parameters": "{\"DeviceMaterialType\":\"NMP\"}"
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},
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{
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"typeId": "3a14233b-f0a9-ba84-eaa9-0d4718b361b6",
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"name": "PDA-2",
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"unit": "微升",
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"quantity": 1,
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"parameters": "{\"DeviceMaterialType\":\"NMP\"}"
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}
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]
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# 如果需要，可以在这里调用add_material方法添加材料
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# 例如:
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# result = bioyond.add_material(json.dumps(material_data_yp_1))
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# print(f"添加材料结果: {result}")
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return {
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"sample_plates": [material_data_yp_1, material_data_yp_2],
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"beakers": beaker_materials
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}
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if __name__ == "__main__":
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# 运行主实验流程
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bioyond_client = run_experiment()
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# 可选：准备材料数据
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# materials = prepare_materials(bioyond_client)
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# print(f"\n准备的材料数据: {materials}")
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