Files
Uni-Lab-OS/unilabos/compile/heatchill_protocol.py
Xuwznln 9aeffebde1 0.10.7 Update (#101)
* Cleanup registry to be easy-understanding (#76)

* delete deprecated mock devices

* rename categories

* combine chromatographic devices

* rename rviz simulation nodes

* organic virtual devices

* parse vessel_id

* run registry completion before merge

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>

* fix: workstation handlers and vessel_id parsing

* fix: working dir error when input config path
feat: report publish topic when error

* modify default discovery_interval to 15s

* feat: add trace log level

* feat: 添加ChinWe设备控制类,支持串口通信和电机控制功能 (#79)

* fix: drop_tips not using auto resource select

* fix: discard_tips error

* fix: discard_tips

* fix: prcxi_res

* add: prcxi res
fix: startup slow

* feat: workstation example

* fix pumps and liquid_handler handle

* feat: 优化protocol node节点运行日志

* fix all protocol_compilers and remove deprecated devices

* feat: 新增use_remote_resource参数

* fix and remove redundant info

* bugfixes on organic protocols

* fix filter protocol

* fix protocol node

* 临时兼容错误的driver写法

* fix: prcxi import error

* use call_async in all service to avoid deadlock

* fix: figure_resource

* Update recipe.yaml

* add workstation template and battery example

* feat: add sk & ak

* update workstation base

* Create workstation_architecture.md

* refactor: workstation_base 重构为仅含业务逻辑,通信和子设备管理交给 ProtocolNode

* refactor: ProtocolNode→WorkstationNode

* Add:msgs.action (#83)

* update: Workstation dev 将版本号从 0.10.3 更新为 0.10.4 (#84)

* Add:msgs.action

* update: 将版本号从 0.10.3 更新为 0.10.4

* simplify resource system

* uncompleted refactor

* example for use WorkstationBase

* feat: websocket

* feat: websocket test

* feat: workstation example

* feat: action status

* fix: station自己的方法注册错误

* fix: 还原protocol node处理方法

* fix: build

* fix: missing job_id key

* ws test version 1

* ws test version 2

* ws protocol

* 增加物料关系上传日志

* 增加物料关系上传日志

* 修正物料关系上传

* 修复工站的tracker实例追踪失效问题

* 增加handle检测,增加material edge关系上传

* 修复event loop错误

* 修复edge上报错误

* 修复async错误

* 更新schema的title字段

* 主机节点信息等支持自动刷新

* 注册表编辑器

* 修复status密集发送时,消息出错

* 增加addr参数

* fix: addr param

* fix: addr param

* 取消labid 和 强制config输入

* Add action definitions for LiquidHandlerSetGroup and LiquidHandlerTransferGroup

- Created LiquidHandlerSetGroup.action with fields for group name, wells, and volumes.
- Created LiquidHandlerTransferGroup.action with fields for source and target group names and unit volume.
- Both actions include response fields for return information and success status.

* Add LiquidHandlerSetGroup and LiquidHandlerTransferGroup actions to CMakeLists

* Add set_group and transfer_group methods to PRCXI9300Handler and update liquid_handler.yaml

* result_info改为字典类型

* 新增uat的地址替换

* runze multiple pump support

(cherry picked from commit 49354fcf39)

* remove runze multiple software obtainer

(cherry picked from commit 8bcc92a394)

* support multiple backbone

(cherry picked from commit 4771ff2347)

* Update runze pump format

* Correct runze multiple backbone

* Update runze_multiple_backbone

* Correct runze pump multiple receive method.

* Correct runze pump multiple receive method.

* 对于PRCXI9320的transfer_group,一对多和多对多

* 移除MQTT,更新launch文档,提供注册表示例文件,更新到0.10.5

* fix import error

* fix dupe upload registry

* refactor ws client

* add server timeout

* Fix: run-column with correct vessel id (#86)

* fix run_column

* Update run_column_protocol.py

(cherry picked from commit e5aa4d940a)

* resource_update use resource_add

* 新增版位推荐功能

* 重新规定了版位推荐的入参

* update registry with nested obj

* fix protocol node log_message, added create_resource return value

* fix protocol node log_message, added create_resource return value

* try fix add protocol

* fix resource_add

* 修复移液站错误的aspirate注册表

* Feature/xprbalance-zhida (#80)

* feat(devices): add Zhida GC/MS pretreatment automation workstation

* feat(devices): add mettler_toledo xpr balance

* balance

* 重新补全zhida注册表

* PRCXI9320 json

* PRCXI9320 json

* PRCXI9320 json

* fix resource download

* remove class for resource

* bump version to 0.10.6

* 更新所有注册表

* 修复protocolnode的兼容性

* 修复protocolnode的兼容性

* Update install md

* Add Defaultlayout

* 更新物料接口

* fix dict to tree/nested-dict converter

* coin_cell_station draft

* refactor: rename "station_resource" to "deck"

* add standardized BIOYOND resources: bottle_carrier, bottle

* refactor and add BIOYOND resources tests

* add BIOYOND deck assignment and pass all tests

* fix: update resource with correct structure; remove deprecated liquid_handler set_group action

* feat: 将新威电池测试系统驱动与配置文件并入 workstation_dev_YB2 (#92)

* feat: 新威电池测试系统驱动与注册文件

* feat: bring neware driver & battery.json into workstation_dev_YB2

* add bioyond studio draft

* bioyond station with communication init and resource sync

* fix bioyond station and registry

* fix: update resource with correct structure; remove deprecated liquid_handler set_group action

* frontend_docs

* create/update resources with POST/PUT for big amount/ small amount data

* create/update resources with POST/PUT for big amount/ small amount data

* refactor: add itemized_carrier instead of carrier consists of ResourceHolder

* create warehouse by factory func

* update bioyond launch json

* add child_size for itemized_carrier

* fix bioyond resource io

* Workstation templates: Resources and its CRUD, and workstation tasks (#95)

* coin_cell_station draft

* refactor: rename "station_resource" to "deck"

* add standardized BIOYOND resources: bottle_carrier, bottle

* refactor and add BIOYOND resources tests

* add BIOYOND deck assignment and pass all tests

* fix: update resource with correct structure; remove deprecated liquid_handler set_group action

* feat: 将新威电池测试系统驱动与配置文件并入 workstation_dev_YB2 (#92)

* feat: 新威电池测试系统驱动与注册文件

* feat: bring neware driver & battery.json into workstation_dev_YB2

* add bioyond studio draft

* bioyond station with communication init and resource sync

* fix bioyond station and registry

* create/update resources with POST/PUT for big amount/ small amount data

* refactor: add itemized_carrier instead of carrier consists of ResourceHolder

* create warehouse by factory func

* update bioyond launch json

* add child_size for itemized_carrier

* fix bioyond resource io

---------

Co-authored-by: h840473807 <47357934+h840473807@users.noreply.github.com>
Co-authored-by: Xie Qiming <97236197+Andy6M@users.noreply.github.com>

* 更新物料接口

* Workstation dev yb2 (#100)

* Refactor and extend reaction station action messages

* Refactor dispensing station tasks to enhance parameter clarity and add batch processing capabilities

- Updated `create_90_10_vial_feeding_task` to include detailed parameters for 90%/10% vial feeding, improving clarity and usability.
- Introduced `create_batch_90_10_vial_feeding_task` for batch processing of 90%/10% vial feeding tasks with JSON formatted input.
- Added `create_batch_diamine_solution_task` for batch preparation of diamine solution, also utilizing JSON formatted input.
- Refined `create_diamine_solution_task` to include additional parameters for better task configuration.
- Enhanced schema descriptions and default values for improved user guidance.

* 修复to_plr_resources

* add update remove

* 支持选择器注册表自动生成
支持转运物料

* 修复资源添加

* 修复transfer_resource_to_another生成

* 更新transfer_resource_to_another参数,支持spot入参

* 新增test_resource动作

* fix host_node error

* fix host_node test_resource error

* fix host_node test_resource error

* 过滤本地动作

* 移动内部action以兼容host node

* 修复同步任务报错不显示的bug

* feat: 允许返回非本节点物料,后面可以通过decoration进行区分,就不进行warning了

* update todo

* modify bioyond/plr converter, bioyond resource registry, and tests

* pass the tests

* update todo

* add conda-pack-build.yml

* add auto install script for conda-pack-build.yml

(cherry picked from commit 172599adcf)

* update conda-pack-build.yml

* update conda-pack-build.yml

* update conda-pack-build.yml

* update conda-pack-build.yml

* update conda-pack-build.yml

* Add version in __init__.py
Update conda-pack-build.yml
Add create_zip_archive.py

* Update conda-pack-build.yml

* Update conda-pack-build.yml (with mamba)

* Update conda-pack-build.yml

* Fix FileNotFoundError

* Try fix 'charmap' codec can't encode characters in position 16-23: character maps to <undefined>

* Fix unilabos msgs search error

* Fix environment_check.py

* Update recipe.yaml

* Update registry. Update uuid loop figure method. Update install docs.

* Fix nested conda pack

* Fix one-key installation path error

* Bump version to 0.10.7

* Workshop bj (#99)

* Add LaiYu Liquid device integration and tests

Introduce LaiYu Liquid device implementation, including backend, controllers, drivers, configuration, and resource files. Add hardware connection, tip pickup, and simplified test scripts, as well as experiment and registry configuration for LaiYu Liquid. Documentation and .gitignore for the device are also included.

* feat(LaiYu_Liquid): 重构设备模块结构并添加硬件文档

refactor: 重新组织LaiYu_Liquid模块目录结构
docs: 添加SOPA移液器和步进电机控制指令文档
fix: 修正设备配置中的最大体积默认值
test: 新增工作台配置测试用例
chore: 删除过时的测试脚本和配置文件

* add

* 重构: 将 LaiYu_Liquid.py 重命名为 laiyu_liquid_main.py 并更新所有导入引用

- 使用 git mv 将 LaiYu_Liquid.py 重命名为 laiyu_liquid_main.py
- 更新所有相关文件中的导入引用
- 保持代码功能不变,仅改善命名一致性
- 测试确认所有导入正常工作

* 修复: 在 core/__init__.py 中添加 LaiYuLiquidBackend 导出

- 添加 LaiYuLiquidBackend 到导入列表
- 添加 LaiYuLiquidBackend 到 __all__ 导出列表
- 确保所有主要类都可以正确导入

* 修复大小写文件夹名字

* 电池装配工站二次开发教程(带目录)上传至dev (#94)

* 电池装配工站二次开发教程

* Update intro.md

* 物料教程

* 更新物料教程,json格式注释

* Update prcxi driver & fix transfer_liquid mix_times (#90)

* Update prcxi driver & fix transfer_liquid mix_times

* fix: correct mix_times type

* Update liquid_handler registry

* test: prcxi.py

* Update registry from pr

* fix ony-key script not exist

* clean files

---------

Co-authored-by: Junhan Chang <changjh@dp.tech>
Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: Xie Qiming <97236197+Andy6M@users.noreply.github.com>
Co-authored-by: h840473807 <47357934+h840473807@users.noreply.github.com>
Co-authored-by: LccLink <1951855008@qq.com>
Co-authored-by: lixinyu1011 <61094742+lixinyu1011@users.noreply.github.com>
Co-authored-by: shiyubo0410 <shiyubo@dp.tech>
2025-10-12 23:34:26 +08:00

329 lines
12 KiB
Python
Raw Blame History

This file contains ambiguous Unicode characters

This file contains Unicode characters that might be confused with other characters. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

from typing import List, Dict, Any, Union
import networkx as nx
import logging
import re
from .utils.vessel_parser import get_vessel
from .utils.unit_parser import parse_time_input
logger = logging.getLogger(__name__)
def debug_print(message):
"""调试输出"""
logger.info(f"[HEATCHILL] {message}")
def parse_temp_input(temp_input: Union[str, float], default_temp: float = 25.0) -> float:
"""
解析温度输入(统一函数)
Args:
temp_input: 温度输入
default_temp: 默认温度
Returns:
float: 温度°C
"""
if not temp_input:
return default_temp
# 🔢 数值输入
if isinstance(temp_input, (int, float)):
result = float(temp_input)
debug_print(f"🌡️ 数值温度: {temp_input}{result}°C")
return result
# 📝 字符串输入
temp_str = str(temp_input).lower().strip()
debug_print(f"🔍 解析温度: '{temp_str}'")
# 🎯 特殊温度
special_temps = {
"room temperature": 25.0, "reflux": 78.0, "ice bath": 0.0,
"boiling": 100.0, "hot": 60.0, "warm": 40.0, "cold": 10.0
}
if temp_str in special_temps:
result = special_temps[temp_str]
debug_print(f"🎯 特殊温度: '{temp_str}'{result}°C")
return result
# 📐 正则解析(如 "256 °C"
temp_pattern = r'(\d+(?:\.\d+)?)\s*°?[cf]?'
match = re.search(temp_pattern, temp_str)
if match:
result = float(match.group(1))
debug_print(f"✅ 温度解析: '{temp_str}'{result}°C")
return result
debug_print(f"⚠️ 无法解析温度: '{temp_str}',使用默认值: {default_temp}°C")
return default_temp
def find_connected_heatchill(G: nx.DiGraph, vessel: str) -> str:
"""查找与指定容器相连的加热/冷却设备"""
debug_print(f"🔍 查找加热设备,目标容器: {vessel}")
# 🔧 查找所有加热设备
heatchill_nodes = []
for node in G.nodes():
node_data = G.nodes[node]
node_class = node_data.get('class', '') or ''
if 'heatchill' in node_class.lower() or 'virtual_heatchill' in node_class:
heatchill_nodes.append(node)
debug_print(f"🎉 找到加热设备: {node}")
# 🔗 检查连接
if vessel and heatchill_nodes:
for heatchill in heatchill_nodes:
if G.has_edge(heatchill, vessel) or G.has_edge(vessel, heatchill):
debug_print(f"✅ 加热设备 '{heatchill}' 与容器 '{vessel}' 相连")
return heatchill
# 🎯 使用第一个可用设备
if heatchill_nodes:
selected = heatchill_nodes[0]
debug_print(f"🔧 使用第一个加热设备: {selected}")
return selected
# 🆘 默认设备
debug_print("⚠️ 未找到加热设备,使用默认设备")
return "heatchill_1"
def validate_and_fix_params(temp: float, time: float, stir_speed: float) -> tuple:
"""验证和修正参数"""
# 🌡️ 温度范围验证
if temp < -50.0 or temp > 300.0:
debug_print(f"⚠️ 温度 {temp}°C 超出范围,修正为 25°C")
temp = 25.0
else:
debug_print(f"✅ 温度 {temp}°C 在正常范围内")
# ⏰ 时间验证
if time < 0:
debug_print(f"⚠️ 时间 {time}s 无效,修正为 300s")
time = 300.0
else:
debug_print(f"✅ 时间 {time}s ({time/60:.1f}分钟) 有效")
# 🌪️ 搅拌速度验证
if stir_speed < 0 or stir_speed > 1500.0:
debug_print(f"⚠️ 搅拌速度 {stir_speed} RPM 超出范围,修正为 300 RPM")
stir_speed = 300.0
else:
debug_print(f"✅ 搅拌速度 {stir_speed} RPM 在正常范围内")
return temp, time, stir_speed
def generate_heat_chill_protocol(
G: nx.DiGraph,
vessel: dict, # 🔧 修改:从字符串改为字典类型
temp: float = 25.0,
time: Union[str, float] = "300",
temp_spec: str = "",
time_spec: str = "",
pressure: str = "",
reflux_solvent: str = "",
stir: bool = False,
stir_speed: float = 300.0,
purpose: str = "",
**kwargs
) -> List[Dict[str, Any]]:
"""
生成加热/冷却操作的协议序列 - 支持vessel字典
Args:
G: 设备图
vessel: 容器字典从XDL传入
temp: 目标温度 (°C)
time: 加热时间(支持字符串如 "30 min"
temp_spec: 温度规格说明优先级高于temp
time_spec: 时间规格说明优先级高于time
pressure: 压力设置
reflux_solvent: 回流溶剂
stir: 是否搅拌
stir_speed: 搅拌速度 (RPM)
purpose: 操作目的说明
**kwargs: 其他参数(兼容性)
Returns:
List[Dict[str, Any]]: 加热/冷却操作的动作序列
"""
# 🔧 核心修改从字典中提取容器ID
vessel_id, vessel_data = get_vessel(vessel)
debug_print("🌡️" * 20)
debug_print("🚀 开始生成加热冷却协议支持vessel字典")
debug_print(f"📝 输入参数:")
debug_print(f" 🥽 vessel: {vessel} (ID: {vessel_id})")
debug_print(f" 🌡️ temp: {temp}°C")
debug_print(f" ⏰ time: {time}")
debug_print(f" 🎯 temp_spec: {temp_spec}")
debug_print(f" ⏱️ time_spec: {time_spec}")
debug_print(f" 🌪️ stir: {stir} ({stir_speed} RPM)")
debug_print(f" 🎭 purpose: '{purpose}'")
debug_print("🌡️" * 20)
# 📋 参数验证
debug_print("📍 步骤1: 参数验证... 🔧")
if not vessel_id: # 🔧 使用 vessel_id
debug_print("❌ vessel 参数不能为空! 😱")
raise ValueError("vessel 参数不能为空")
if vessel_id not in G.nodes(): # 🔧 使用 vessel_id
debug_print(f"❌ 容器 '{vessel_id}' 不存在于系统中! 😞")
raise ValueError(f"容器 '{vessel_id}' 不存在于系统中")
debug_print("✅ 基础参数验证通过 🎯")
# 🔄 参数解析
debug_print("📍 步骤2: 参数解析... ⚡")
#温度解析:优先使用 temp_spec
final_temp = parse_temp_input(temp_spec, temp) if temp_spec else temp
# 时间解析:优先使用 time_spec
final_time = parse_time_input(time_spec) if time_spec else parse_time_input(time)
# 参数修正
final_temp, final_time, stir_speed = validate_and_fix_params(final_temp, final_time, stir_speed)
debug_print(f"🎯 最终参数: temp={final_temp}°C, time={final_time}s, stir_speed={stir_speed} RPM")
# 🔍 查找设备
debug_print("📍 步骤3: 查找加热设备... 🔍")
try:
heatchill_id = find_connected_heatchill(G, vessel_id) # 🔧 使用 vessel_id
debug_print(f"🎉 使用加热设备: {heatchill_id}")
except Exception as e:
debug_print(f"❌ 设备查找失败: {str(e)} 😭")
raise ValueError(f"无法找到加热设备: {str(e)}")
# 🚀 生成动作
debug_print("📍 步骤4: 生成加热动作... 🔥")
# 🕐 模拟运行时间优化
debug_print(" ⏱️ 检查模拟运行时间限制...")
original_time = final_time
simulation_time_limit = 100.0 # 模拟运行时间限制100秒
if final_time > simulation_time_limit:
final_time = simulation_time_limit
debug_print(f" 🎮 模拟运行优化: {original_time}s → {final_time}s (限制为{simulation_time_limit}s) ⚡")
debug_print(f" 📊 时间缩短: {original_time/60:.1f}分钟 → {final_time/60:.1f}分钟 🚀")
else:
debug_print(f" ✅ 时间在限制内: {final_time}s ({final_time/60:.1f}分钟) 保持不变 🎯")
action_sequence = []
heatchill_action = {
"device_id": heatchill_id,
"action_name": "heat_chill",
"action_kwargs": {
"vessel": {"id": vessel},
"temp": float(final_temp),
"time": float(final_time),
"stir": bool(stir),
"stir_speed": float(stir_speed),
"purpose": str(purpose or f"加热到 {final_temp}°C") + (f" (模拟时间: {final_time}s)" if original_time != final_time else "")
}
}
action_sequence.append(heatchill_action)
debug_print("✅ 加热动作已添加 🔥✨")
# 显示时间调整信息
if original_time != final_time:
debug_print(f" 🎭 模拟优化说明: 原计划 {original_time/60:.1f}分钟,实际模拟 {final_time/60:.1f}分钟 ⚡")
# 🎊 总结
debug_print("🎊" * 20)
debug_print(f"🎉 加热冷却协议生成完成! ✨")
debug_print(f"📊 总动作数: {len(action_sequence)}")
debug_print(f"🥽 加热容器: {vessel_id}")
debug_print(f"🌡️ 目标温度: {final_temp}°C")
debug_print(f"⏰ 加热时间: {final_time}s ({final_time/60:.1f}分钟)")
debug_print("🎊" * 20)
return action_sequence
def generate_heat_chill_to_temp_protocol(
G: nx.DiGraph,
vessel: dict, # 🔧 修改参数类型
temp: float = 25.0,
time: Union[str, float] = 100.0,
**kwargs
) -> List[Dict[str, Any]]:
"""生成加热到指定温度的协议(简化版)"""
vessel_id, _ = get_vessel(vessel)
debug_print(f"🌡️ 生成加热到温度协议: {vessel_id}{temp}°C")
return generate_heat_chill_protocol(G, vessel, temp, time, **kwargs)
def generate_heat_chill_start_protocol(
G: nx.DiGraph,
vessel: dict, # 🔧 修改参数类型
temp: float = 25.0,
purpose: str = "",
**kwargs
) -> List[Dict[str, Any]]:
"""生成开始加热操作的协议序列"""
# 🔧 核心修改从字典中提取容器ID
vessel_id, _ = get_vessel(vessel)
debug_print("🔥 开始生成启动加热协议 ✨")
debug_print(f"🥽 vessel: {vessel} (ID: {vessel_id}), 🌡️ temp: {temp}°C")
# 基础验证
if not vessel_id or vessel_id not in G.nodes(): # 🔧 使用 vessel_id
debug_print("❌ 容器验证失败!")
raise ValueError("vessel 参数无效")
# 查找设备
heatchill_id = find_connected_heatchill(G, vessel_id) # 🔧 使用 vessel_id
# 生成动作
action_sequence = [{
"device_id": heatchill_id,
"action_name": "heat_chill_start",
"action_kwargs": {
"temp": temp,
"purpose": purpose or f"开始加热到 {temp}°C",
"vessel": {"id": vessel_id},
}
}]
debug_print(f"✅ 启动加热协议生成完成 🎯")
return action_sequence
def generate_heat_chill_stop_protocol(
G: nx.DiGraph,
vessel: dict, # 🔧 修改参数类型
**kwargs
) -> List[Dict[str, Any]]:
"""生成停止加热操作的协议序列"""
# 🔧 核心修改从字典中提取容器ID
vessel_id, _ = get_vessel(vessel)
debug_print("🛑 开始生成停止加热协议 ✨")
debug_print(f"🥽 vessel: {vessel} (ID: {vessel_id})")
# 基础验证
if not vessel_id or vessel_id not in G.nodes(): # 🔧 使用 vessel_id
debug_print("❌ 容器验证失败!")
raise ValueError("vessel 参数无效")
# 查找设备
heatchill_id = find_connected_heatchill(G, vessel_id) # 🔧 使用 vessel_id
# 生成动作
action_sequence = [{
"device_id": heatchill_id,
"action_name": "heat_chill_stop",
"action_kwargs": {
}
}]
debug_print(f"✅ 停止加热协议生成完成 🎯")
return action_sequence