Files
Uni-Lab-OS/scripts/dev_install.py
Xuwznln 2a5ddd611d Upgrade to py 3.11.14; ROS2 Humble 0.7; unilabos 0.10.16
Workbench example, adjust log level, and ci check (#220)

* TestLatency Return Value Example & gitignore update

* Adjust log level & Add workbench virtual example & Add not action decorator & Add check_mode &

* Add CI Check

Fix/workstation yb revision (#217)

* Revert log change & update registry

* Revert opcua client & move electrolyte node

Workstation yb merge dev ready 260113 (#216)

* feat(bioyond): 添加计算实验设计功能,支持化合物配比和滴定比例参数

* feat(bioyond): 添加测量小瓶功能,支持基本参数配置

* feat(bioyond): 添加测量小瓶配置,支持新设备参数

* feat(bioyond): 更新仓库布局和尺寸,支持竖向排列的测量小瓶和试剂存放堆栈

* feat(bioyond): 优化任务创建流程,确保无论成功与否都清理任务队列以避免重复累积

* feat(bioyond): 添加设置反应器温度功能,支持温度范围和异常处理

* feat(bioyond): 调整反应器位置配置,统一坐标格式

* feat(bioyond): 添加调度器启动功能,支持任务队列执行并处理异常

* feat(bioyond): 优化调度器启动功能,添加异常处理并更新相关配置

* feat(opcua): 增强节点ID解析兼容性和数据类型处理

改进节点ID解析逻辑以支持多种格式,包括字符串和数字标识符
添加数据类型转换处理,确保写入值时类型匹配
优化错误提示信息,便于调试节点连接问题

* feat(registry): 新增后处理站的设备配置文件

添加后处理站的YAML配置文件,包含动作映射、状态类型和设备描述

* 添加调度器启动功能,合并物料参数配置,优化物料参数处理逻辑

* 添加从 Bioyond 系统自动同步工作流序列的功能,并更新相关配置

* fix:兼容 BioyondReactionStation 中 workflow_sequence 被重写为 property

* fix:同步工作流序列

* feat: remove commented workflow synchronization from `reaction_station.py`.

* 添加时间约束功能及相关配置

* fix:自动更新物料缓存功能,添加物料时更新缓存并在删除时移除缓存项

* fix:在添加物料时处理字符串和字典返回值,确保正确更新缓存

* fix:更新奔曜错误处理报送为物料变更报送,调整日志记录和响应消息

* feat:添加实验报告简化功能,去除冗余信息并保留关键信息

* feat: 添加任务状态事件发布功能,监控并报告任务运行、超时、完成和错误状态

* fix: 修复添加物料时数据格式错误

* Refactor bioyond_dispensing_station and reaction_station_bioyond YAML configurations

- Removed redundant action value mappings from bioyond_dispensing_station.
- Updated goal properties in bioyond_dispensing_station to use enums for target_stack and other parameters.
- Changed data types for end_point and start_point in reaction_station_bioyond to use string enums (Start, End).
- Simplified descriptions and updated measurement units from μL to mL where applicable.
- Removed unused commands from reaction_station_bioyond to streamline the configuration.

* fix:Change the material unit from μL to mL

* fix:refresh_material_cache

* feat: 动态获取工作流步骤ID,优化工作流配置

* feat: 添加清空服务端所有非核心工作流功能

* fix:修复Bottle类的序列化和反序列化方法

* feat:增强材料缓存更新逻辑,支持处理返回数据中的详细信息

* Add debug log

* feat(workstation): update bioyond config migration and coin cell material search logic

- Migrate bioyond_cell config to JSON structure and remove global variable dependencies
- Implement material search confirmation dialog auto-handling
- Add documentation: 20260113_物料搜寻确认弹窗自动处理功能.md and 20260113_配置迁移修改总结.md

* Refactor module paths for Bioyond devices in YAML configuration files

- Updated the module path for BioyondDispensingStation in bioyond_dispensing_station.yaml to reflect the new directory structure.
- Updated the module path for BioyondReactionStation and BioyondReactor in reaction_station_bioyond.yaml to align with the revised organization of the codebase.

* fix: WareHouse 的不可哈希类型错误,优化父节点去重逻辑

* refactor: Move config from module to instance initialization

* fix: 修正 reaction_station 目录名拼写错误

* feat: Integrate material search logic and cleanup deprecated files

- Update coin_cell_assembly.py with material search dialog handling
- Update YB_warehouses.py with latest warehouse configurations
- Remove outdated documentation and test data files

* Refactor: Use instance attributes for action names and workflow step IDs

* refactor: Split tipbox storage into left and right warehouses

* refactor: Merge tipbox storage left and right into single warehouse

---------

Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>
Co-authored-by: Andy6M <xieqiming1132@qq.com>

fix: WareHouse 的不可哈希类型错误,优化父节点去重逻辑

fix parent_uuid fetch when bind_parent_id == node_name

物料更新也是用父节点进行报送

Add None conversion for tube rack etc.

Add set_liquid example.

Add create_resource and test_resource example.

Add restart.
Temp allow action message.

Add no_update_feedback option.

Create session_id by edge.

bump version to 0.10.15

temp cancel update req
2026-01-27 15:21:55 +08:00

215 lines
7.7 KiB
Python

#!/usr/bin/env python3
"""
Development installation script for UniLabOS.
Auto-detects Chinese locale and uses appropriate mirror.
Usage:
python scripts/dev_install.py
python scripts/dev_install.py --no-mirror # Force no mirror
python scripts/dev_install.py --china # Force China mirror
python scripts/dev_install.py --skip-deps # Skip pip dependencies installation
Flow:
1. pip install -e . (install unilabos in editable mode)
2. Detect Chinese locale
3. Use uv to install pip dependencies from requirements.txt
4. Special packages (like pylabrobot) are handled by environment_check.py at runtime
"""
import locale
import subprocess
import sys
import argparse
from pathlib import Path
# Tsinghua mirror URL
TSINGHUA_MIRROR = "https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple"
def is_chinese_locale() -> bool:
"""
Detect if system is in Chinese locale.
Same logic as EnvironmentChecker._is_chinese_locale()
"""
try:
lang = locale.getdefaultlocale()[0]
if lang and ("zh" in lang.lower() or "chinese" in lang.lower()):
return True
except Exception:
pass
return False
def run_command(cmd: list, description: str, retry: int = 2) -> bool:
"""Run command with retry support."""
print(f"[INFO] {description}")
print(f"[CMD] {' '.join(cmd)}")
for attempt in range(retry + 1):
try:
result = subprocess.run(cmd, check=True, timeout=600)
print(f"[OK] {description}")
return True
except subprocess.CalledProcessError as e:
if attempt < retry:
print(f"[WARN] Attempt {attempt + 1} failed, retrying...")
else:
print(f"[ERROR] {description} failed: {e}")
return False
except subprocess.TimeoutExpired:
print(f"[ERROR] {description} timed out")
return False
return False
def install_editable(project_root: Path, use_mirror: bool) -> bool:
"""Install unilabos in editable mode using pip."""
cmd = [sys.executable, "-m", "pip", "install", "-e", str(project_root)]
if use_mirror:
cmd.extend(["-i", TSINGHUA_MIRROR])
return run_command(cmd, "Installing unilabos in editable mode")
def install_requirements_uv(requirements_file: Path, use_mirror: bool) -> bool:
"""Install pip dependencies using uv (installed via conda-forge::uv)."""
cmd = ["uv", "pip", "install", "-r", str(requirements_file)]
if use_mirror:
cmd.extend(["-i", TSINGHUA_MIRROR])
return run_command(cmd, "Installing pip dependencies with uv", retry=2)
def install_requirements_pip(requirements_file: Path, use_mirror: bool) -> bool:
"""Fallback: Install pip dependencies using pip."""
cmd = [sys.executable, "-m", "pip", "install", "-r", str(requirements_file)]
if use_mirror:
cmd.extend(["-i", TSINGHUA_MIRROR])
return run_command(cmd, "Installing pip dependencies with pip", retry=2)
def check_uv_available() -> bool:
"""Check if uv is available (installed via conda-forge::uv)."""
try:
subprocess.run(["uv", "--version"], capture_output=True, check=True)
return True
except (subprocess.CalledProcessError, FileNotFoundError):
return False
def main():
parser = argparse.ArgumentParser(description="Development installation script for UniLabOS")
parser.add_argument("--china", action="store_true", help="Force use China mirror (Tsinghua)")
parser.add_argument("--no-mirror", action="store_true", help="Force use default PyPI (no mirror)")
parser.add_argument(
"--skip-deps", action="store_true", help="Skip pip dependencies installation (only install unilabos)"
)
parser.add_argument("--use-pip", action="store_true", help="Use pip instead of uv for dependencies")
args = parser.parse_args()
# Determine project root
script_dir = Path(__file__).parent
project_root = script_dir.parent
requirements_file = project_root / "unilabos" / "utils" / "requirements.txt"
if not (project_root / "setup.py").exists():
print(f"[ERROR] setup.py not found in {project_root}")
sys.exit(1)
print("=" * 60)
print("UniLabOS Development Installation")
print("=" * 60)
print(f"Project root: {project_root}")
print()
# Determine mirror usage based on locale
if args.no_mirror:
use_mirror = False
print("[INFO] Mirror disabled by --no-mirror flag")
elif args.china:
use_mirror = True
print("[INFO] China mirror enabled by --china flag")
else:
use_mirror = is_chinese_locale()
if use_mirror:
print("[INFO] Chinese locale detected, using Tsinghua mirror")
else:
print("[INFO] Non-Chinese locale detected, using default PyPI")
print()
# Step 1: Install unilabos in editable mode
print("[STEP 1] Installing unilabos in editable mode...")
if not install_editable(project_root, use_mirror):
print("[ERROR] Failed to install unilabos")
print()
print("Manual fallback:")
if use_mirror:
print(f" pip install -e {project_root} -i {TSINGHUA_MIRROR}")
else:
print(f" pip install -e {project_root}")
sys.exit(1)
print()
# Step 2: Install pip dependencies
if args.skip_deps:
print("[INFO] Skipping pip dependencies installation (--skip-deps)")
else:
print("[STEP 2] Installing pip dependencies...")
if not requirements_file.exists():
print(f"[WARN] Requirements file not found: {requirements_file}")
print("[INFO] Skipping dependencies installation")
else:
# Try uv first (faster), fallback to pip
if args.use_pip:
print("[INFO] Using pip (--use-pip flag)")
success = install_requirements_pip(requirements_file, use_mirror)
elif check_uv_available():
print("[INFO] Using uv (installed via conda-forge::uv)")
success = install_requirements_uv(requirements_file, use_mirror)
if not success:
print("[WARN] uv failed, falling back to pip...")
success = install_requirements_pip(requirements_file, use_mirror)
else:
print("[WARN] uv not available (should be installed via: mamba install conda-forge::uv)")
print("[INFO] Falling back to pip...")
success = install_requirements_pip(requirements_file, use_mirror)
if not success:
print()
print("[WARN] Failed to install some dependencies automatically.")
print("You can manually install them:")
if use_mirror:
print(f" uv pip install -r {requirements_file} -i {TSINGHUA_MIRROR}")
print(" or:")
print(f" pip install -r {requirements_file} -i {TSINGHUA_MIRROR}")
else:
print(f" uv pip install -r {requirements_file}")
print(" or:")
print(f" pip install -r {requirements_file}")
print()
print("=" * 60)
print("Installation complete!")
print("=" * 60)
print()
print("Note: Some special packages (like pylabrobot) are installed")
print("automatically at runtime by unilabos if needed.")
print()
print("Verify installation:")
print(' python -c "import unilabos; print(unilabos.__version__)"')
print()
print("If you encounter issues, you can manually install dependencies:")
if use_mirror:
print(f" uv pip install -r unilabos/utils/requirements.txt -i {TSINGHUA_MIRROR}")
else:
print(" uv pip install -r unilabos/utils/requirements.txt")
print()
if __name__ == "__main__":
main()