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* feat: Enhance Bioyond synchronization and resource management - Implemented synchronization for all material types (consumables, samples, reagents) from Bioyond, logging detailed information for each type. - Improved error handling and logging during synchronization processes. - Added functionality to save Bioyond material IDs in UniLab resources for future updates. - Enhanced the `sync_to_external` method to handle material movements correctly, including querying and creating materials in Bioyond. - Updated warehouse configurations to support new storage types and improved layout for better resource management. - Introduced new resource types such as reactors and tip boxes, with detailed specifications. - Modified warehouse factory to support column offsets for naming conventions (e.g., A05-D08). - Improved resource tracking by merging extra attributes instead of overwriting them. - Added a new method for updating resources in Bioyond, ensuring better synchronization of resource changes. * feat: 添加TipBox和Reactor的配置到bottles.yaml * fix: 修复液体投料方法中的volume参数处理逻辑
179 lines
4.5 KiB
Python
179 lines
4.5 KiB
Python
from unilabos.resources.itemized_carrier import Bottle, BottleCarrier
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# 工厂函数
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def BIOYOND_PolymerStation_Solid_Stock(
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name: str,
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diameter: float = 20.0,
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height: float = 100.0,
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max_volume: float = 30000.0, # 30mL
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barcode: str = None,
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) -> Bottle:
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"""创建粉末瓶"""
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return Bottle(
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name=name,
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diameter=diameter,
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height=height,
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max_volume=max_volume,
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barcode=barcode,
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model="BIOYOND_PolymerStation_Solid_Stock",
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)
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def BIOYOND_PolymerStation_Solid_Vial(
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name: str,
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diameter: float = 25.0,
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height: float = 60.0,
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max_volume: float = 30000.0, # 30mL
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barcode: str = None,
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) -> Bottle:
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"""创建粉末瓶"""
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return Bottle(
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name=name,
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diameter=diameter,
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height=height,
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max_volume=max_volume,
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barcode=barcode,
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model="BIOYOND_PolymerStation_Solid_Vial",
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)
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def BIOYOND_PolymerStation_Liquid_Vial(
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name: str,
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diameter: float = 25.0,
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height: float = 60.0,
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max_volume: float = 30000.0, # 30mL
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barcode: str = None,
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) -> Bottle:
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"""创建滴定液瓶"""
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return Bottle(
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name=name,
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diameter=diameter,
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height=height,
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max_volume=max_volume,
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barcode=barcode,
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model="BIOYOND_PolymerStation_Liquid_Vial",
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)
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def BIOYOND_PolymerStation_Solution_Beaker(
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name: str,
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diameter: float = 60.0,
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height: float = 70.0,
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max_volume: float = 200000.0, # 200mL
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barcode: str = None,
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) -> Bottle:
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"""创建溶液烧杯"""
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return Bottle(
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name=name,
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diameter=diameter,
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height=height,
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max_volume=max_volume,
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barcode=barcode,
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model="BIOYOND_PolymerStation_Solution_Beaker",
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)
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def BIOYOND_PolymerStation_Reagent_Bottle(
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name: str,
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diameter: float = 70.0,
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height: float = 120.0,
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max_volume: float = 500000.0, # 500mL
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barcode: str = None,
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) -> Bottle:
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"""创建试剂瓶"""
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return Bottle(
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name=name,
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diameter=diameter,
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height=height,
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max_volume=max_volume,
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barcode=barcode,
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model="BIOYOND_PolymerStation_Reagent_Bottle",
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)
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def BIOYOND_PolymerStation_Reactor(
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name: str,
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diameter: float = 30.0,
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height: float = 80.0,
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max_volume: float = 50000.0, # 50mL
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barcode: str = None,
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) -> Bottle:
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"""创建反应器"""
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return Bottle(
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name=name,
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diameter=diameter,
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height=height,
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max_volume=max_volume,
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barcode=barcode,
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model="BIOYOND_PolymerStation_Reactor",
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)
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def BIOYOND_PolymerStation_TipBox(
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name: str,
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size_x: float = 127.76, # 枪头盒宽度
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size_y: float = 85.48, # 枪头盒长度
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size_z: float = 100.0, # 枪头盒高度
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barcode: str = None,
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):
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"""创建4×6枪头盒 (24个枪头)
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Args:
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name: 枪头盒名称
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size_x: 枪头盒宽度 (mm)
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size_y: 枪头盒长度 (mm)
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size_z: 枪头盒高度 (mm)
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barcode: 条形码
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Returns:
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TipBoxCarrier: 包含24个枪头孔位的枪头盒
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"""
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from pylabrobot.resources import Container, Coordinate
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# 创建枪头盒容器
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tip_box = Container(
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name=name,
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size_x=size_x,
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size_y=size_y,
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size_z=size_z,
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category="tip_rack",
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model="BIOYOND_PolymerStation_TipBox_4x6",
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)
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# 设置自定义属性
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tip_box.barcode = barcode
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tip_box.tip_count = 24 # 4行×6列
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tip_box.num_items_x = 6 # 6列
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tip_box.num_items_y = 4 # 4行
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# 创建24个枪头孔位 (4行×6列)
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# 假设孔位间距为 9mm
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tip_spacing_x = 9.0 # 列间距
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tip_spacing_y = 9.0 # 行间距
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start_x = 14.38 # 第一个孔位的x偏移
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start_y = 11.24 # 第一个孔位的y偏移
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for row in range(4): # A, B, C, D
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for col in range(6): # 1-6
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spot_name = f"{chr(65 + row)}{col + 1}" # A1, A2, ..., D6
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x = start_x + col * tip_spacing_x
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y = start_y + row * tip_spacing_y
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# 创建枪头孔位容器
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tip_spot = Container(
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name=spot_name,
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size_x=8.0, # 单个枪头孔位大小
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size_y=8.0,
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size_z=size_z - 10.0, # 略低于盒子高度
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category="tip_spot",
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)
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# 添加到枪头盒
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tip_box.assign_child_resource(
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tip_spot,
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location=Coordinate(x=x, y=y, z=0)
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)
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return tip_box
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