mirror of
https://github.com/dptech-corp/Uni-Lab-OS.git
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Workbench example, adjust log level, and ci check (#220) * TestLatency Return Value Example & gitignore update * Adjust log level & Add workbench virtual example & Add not action decorator & Add check_mode & * Add CI Check Fix/workstation yb revision (#217) * Revert log change & update registry * Revert opcua client & move electrolyte node Workstation yb merge dev ready 260113 (#216) * feat(bioyond): 添加计算实验设计功能,支持化合物配比和滴定比例参数 * feat(bioyond): 添加测量小瓶功能,支持基本参数配置 * feat(bioyond): 添加测量小瓶配置,支持新设备参数 * feat(bioyond): 更新仓库布局和尺寸,支持竖向排列的测量小瓶和试剂存放堆栈 * feat(bioyond): 优化任务创建流程,确保无论成功与否都清理任务队列以避免重复累积 * feat(bioyond): 添加设置反应器温度功能,支持温度范围和异常处理 * feat(bioyond): 调整反应器位置配置,统一坐标格式 * feat(bioyond): 添加调度器启动功能,支持任务队列执行并处理异常 * feat(bioyond): 优化调度器启动功能,添加异常处理并更新相关配置 * feat(opcua): 增强节点ID解析兼容性和数据类型处理 改进节点ID解析逻辑以支持多种格式,包括字符串和数字标识符 添加数据类型转换处理,确保写入值时类型匹配 优化错误提示信息,便于调试节点连接问题 * feat(registry): 新增后处理站的设备配置文件 添加后处理站的YAML配置文件,包含动作映射、状态类型和设备描述 * 添加调度器启动功能,合并物料参数配置,优化物料参数处理逻辑 * 添加从 Bioyond 系统自动同步工作流序列的功能,并更新相关配置 * fix:兼容 BioyondReactionStation 中 workflow_sequence 被重写为 property * fix:同步工作流序列 * feat: remove commented workflow synchronization from `reaction_station.py`. * 添加时间约束功能及相关配置 * fix:自动更新物料缓存功能,添加物料时更新缓存并在删除时移除缓存项 * fix:在添加物料时处理字符串和字典返回值,确保正确更新缓存 * fix:更新奔曜错误处理报送为物料变更报送,调整日志记录和响应消息 * feat:添加实验报告简化功能,去除冗余信息并保留关键信息 * feat: 添加任务状态事件发布功能,监控并报告任务运行、超时、完成和错误状态 * fix: 修复添加物料时数据格式错误 * Refactor bioyond_dispensing_station and reaction_station_bioyond YAML configurations - Removed redundant action value mappings from bioyond_dispensing_station. - Updated goal properties in bioyond_dispensing_station to use enums for target_stack and other parameters. - Changed data types for end_point and start_point in reaction_station_bioyond to use string enums (Start, End). - Simplified descriptions and updated measurement units from μL to mL where applicable. - Removed unused commands from reaction_station_bioyond to streamline the configuration. * fix:Change the material unit from μL to mL * fix:refresh_material_cache * feat: 动态获取工作流步骤ID,优化工作流配置 * feat: 添加清空服务端所有非核心工作流功能 * fix:修复Bottle类的序列化和反序列化方法 * feat:增强材料缓存更新逻辑,支持处理返回数据中的详细信息 * Add debug log * feat(workstation): update bioyond config migration and coin cell material search logic - Migrate bioyond_cell config to JSON structure and remove global variable dependencies - Implement material search confirmation dialog auto-handling - Add documentation: 20260113_物料搜寻确认弹窗自动处理功能.md and 20260113_配置迁移修改总结.md * Refactor module paths for Bioyond devices in YAML configuration files - Updated the module path for BioyondDispensingStation in bioyond_dispensing_station.yaml to reflect the new directory structure. - Updated the module path for BioyondReactionStation and BioyondReactor in reaction_station_bioyond.yaml to align with the revised organization of the codebase. * fix: WareHouse 的不可哈希类型错误,优化父节点去重逻辑 * refactor: Move config from module to instance initialization * fix: 修正 reaction_station 目录名拼写错误 * feat: Integrate material search logic and cleanup deprecated files - Update coin_cell_assembly.py with material search dialog handling - Update YB_warehouses.py with latest warehouse configurations - Remove outdated documentation and test data files * Refactor: Use instance attributes for action names and workflow step IDs * refactor: Split tipbox storage into left and right warehouses * refactor: Merge tipbox storage left and right into single warehouse --------- Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com> Co-authored-by: Andy6M <xieqiming1132@qq.com> fix: WareHouse 的不可哈希类型错误,优化父节点去重逻辑 fix parent_uuid fetch when bind_parent_id == node_name 物料更新也是用父节点进行报送 Add None conversion for tube rack etc. Add set_liquid example. Add create_resource and test_resource example. Add restart. Temp allow action message. Add no_update_feedback option. Create session_id by edge. bump version to 0.10.15 temp cancel update req
211 lines
6.7 KiB
Python
211 lines
6.7 KiB
Python
# Configuration file for the Sphinx documentation builder.
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# Sphinx 文档生成器的配置文件
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# For the full list of built-in configuration values, see the documentation:
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# https://www.sphinx-doc.org/en/master/usage/configuration.html
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# -- Project information -----------------------------------------------------
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# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
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import os
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import sys
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# 将项目的根目录添加到 sys.path 中,以便 Sphinx 能够找到 unilabos 包
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sys.path.insert(0, os.path.abspath(".."))
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project = "Uni-Lab"
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copyright = "2025, Uni-Lab Community, DP Technology & Peking University"
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author = "Uni-Lab Community, DP Technology & Peking University"
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# -- General configuration ---------------------------------------------------
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# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
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extensions = [
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"myst_parser",
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"sphinx.ext.autodoc",
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"sphinx.ext.napoleon", # 如果您使用 Google 或 NumPy 风格的 docstrings
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"sphinx_rtd_theme",
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"sphinxcontrib.mermaid",
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]
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source_suffix = {
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".rst": "restructuredtext",
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".txt": "markdown",
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".md": "markdown",
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}
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myst_enable_extensions = [
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"colon_fence",
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"deflist",
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"dollarmath",
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"html_image",
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"replacements",
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"smartquotes",
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"substitution",
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]
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myst_fence_as_directive = ["mermaid"]
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templates_path = ["_templates"]
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exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
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language = "zh"
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# -- Options for HTML output -------------------------------------------------
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# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
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# 设置 HTML 主题为 sphinx-book-theme
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html_theme = "sphinx_rtd_theme"
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# sphinx-book-theme 主题选项
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html_theme_options = {
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"repository_url": "https://github.com/deepmodeling/Uni-Lab-OS",
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"use_repository_button": True,
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"use_issues_button": True,
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"use_edit_page_button": True,
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"use_download_button": True,
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"path_to_docs": "docs",
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"show_navbar_depth": 2,
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"show_toc_level": 2,
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"home_page_in_toc": True,
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"logo_only": False,
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}
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# 设置 HTML 文档的静态文件路径
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html_static_path = ["_static"] # 如果有自定义 CSS,可以放在 _static 目录中
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section_titles = {
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"Simple": "## 简单单变量动作函数",
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"Organic": """## 常量有机化学操作
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Uni-Lab 常量有机化学指令集多数来自 [XDL](https://croningroup.gitlab.io/chemputer/xdl/standard/full_steps_specification.html#),包含有机合成实验中常见的操作,如加热、搅拌、冷却等。
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""",
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"Bio": """## 移液工作站及相关生物自动化设备操作
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Uni-Lab 生物操作指令集多数来自 [PyLabRobot](https://docs.pylabrobot.org/user_guide/index.html),包含生物实验中常见的操作,如移液、混匀、离心等。
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""",
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"MobileRobot": "## 多工作站及小车运行、物料转移",
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"Robot": """## 机械臂、夹爪等机器人设备
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Uni-Lab 机械臂、机器人、夹爪和导航指令集沿用 ROS2 的 `control_msgs` 和 `nav2_msgs`:
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""",
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}
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import os
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from pathlib import Path
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def get_conda_share_dir(package_name=None):
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"""获取 Conda 环境的 share 目录路径
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:param package_name: 可选参数,指定具体包的 share 子目录
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:return: Path 对象或 None
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"""
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# 获取当前 Conda 环境根目录
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conda_prefix = os.getenv("CONDA_PREFIX")
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if not conda_prefix:
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raise EnvironmentError("未检测到激活的 Conda 环境")
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# 构建基础 share 目录路径
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share_dir = Path(conda_prefix) / "share"
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# 如果指定了包名,追加包子目录
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if package_name:
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share_dir = share_dir / package_name
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# 验证路径是否存在
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if not share_dir.exists():
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print(f"警告: 路径 {share_dir} 不存在")
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return None
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return share_dir
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def generate_action_includes(app):
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src_dir = Path(app.srcdir)
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print(f"Generating action includes for {src_dir}")
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action_dir = src_dir.parent / "unilabos_msgs" / "action" # 修改为你的实际路径
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output_file = src_dir / "developer_guide" / "action_includes.md"
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# 确保输出目录存在
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output_file.parent.mkdir(exist_ok=True)
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# 初始化各部分内容
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sections = {}
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# 仅处理本地消息文件
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if action_dir.exists():
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for action_file in sorted(action_dir.glob("*.action")):
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# 获取相对路径
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rel_path = f"../../unilabos_msgs/action/{action_file.name}"
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# 读取首行注释
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try:
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with open(action_file, "r", encoding="utf-8") as af:
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first_line = af.readline().strip()
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# 提取注释内容(去除#和空格)
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section = first_line.lstrip("#").strip()
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text = f"""
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### `{action_file.stem}`
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```{{literalinclude}} {rel_path}
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:language: yaml
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```
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----
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"""
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if sections.get(section) is None:
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sections[section] = text
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else:
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sections[section] += text
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except Exception as e:
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print(f"处理文件 {action_file} 时出错: {e}")
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else:
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print(f"警告: 动作消息目录 {action_dir} 不存在")
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ros_action_dirs = []
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control_msgs_dir = get_conda_share_dir("control_msgs")
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nav2_msgs_dir = get_conda_share_dir("nav2_msgs")
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if control_msgs_dir is not None:
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ros_action_dirs.append(control_msgs_dir / "action")
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if nav2_msgs_dir is not None:
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ros_action_dirs.append(nav2_msgs_dir / "action")
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for action_dir in ros_action_dirs:
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for action_file in sorted(action_dir.glob("*.action")):
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# 获取相对路径
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rel_path = f"{action_file.absolute()}"
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# 读取首行注释
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with open(action_file, "r", encoding="utf-8") as af:
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# 提取注释内容(去除#和空格)
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section = "Robot"
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text = f"""### `{action_file.stem}`
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```yaml
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{open(rel_path, 'r').read()}
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```
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----
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"""
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if sections.get(section) is None:
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sections[section] = text
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else:
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sections[section] += text
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# 写入内容到输出文件
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with open(output_file, "w", encoding="utf-8") as f:
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# 按 Section 生成总文档
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for section, title in section_titles.items():
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content = sections.get(section, "")
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if content: # 只有有内容时才写入标题和内容
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f.write(f"{title}\n\n")
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f.write(content)
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def setup(app):
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app.connect("builder-inited", generate_action_includes)
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app.add_js_file("https://cdn.jsdelivr.net/npm/mermaid/dist/mermaid.min.js")
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app.add_js_file(None, body="mermaid.initialize({startOnLoad:true});")
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