Add workflow upload func.

test/workflow/example_bio.json

@@ -0,0 +1,186 @@
+{
+  "workflow": [
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_1",
+        "targets": "Liquid_2",
+        "asp_vol": 66.0,
+        "dis_vol": 66.0,
+        "asp_flow_rate": 94.0,
+        "dis_flow_rate": 94.0
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_2",
+        "targets": "Liquid_3",
+        "asp_vol": 58.0,
+        "dis_vol": 96.0,
+        "asp_flow_rate": 94.0,
+        "dis_flow_rate": 94.0
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_4",
+        "targets": "Liquid_2",
+        "asp_vol": 85.0,
+        "dis_vol": 170.0,
+        "asp_flow_rate": 94.0,
+        "dis_flow_rate": 94.0
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_4",
+        "targets": "Liquid_2",
+        "asp_vol": 63.333333333333336,
+        "dis_vol": 170.0,
+        "asp_flow_rate": 94.0,
+        "dis_flow_rate": 94.0
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_2",
+        "targets": "Liquid_3",
+        "asp_vol": 72.0,
+        "dis_vol": 150.0,
+        "asp_flow_rate": 94.0,
+        "dis_flow_rate": 94.0
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_4",
+        "targets": "Liquid_2",
+        "asp_vol": 85.0,
+        "dis_vol": 170.0,
+        "asp_flow_rate": 94.0,
+        "dis_flow_rate": 94.0
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_4",
+        "targets": "Liquid_2",
+        "asp_vol": 63.333333333333336,
+        "dis_vol": 170.0,
+        "asp_flow_rate": 94.0,
+        "dis_flow_rate": 94.0
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_2",
+        "targets": "Liquid_3",
+        "asp_vol": 72.0,
+        "dis_vol": 150.0,
+        "asp_flow_rate": 94.0,
+        "dis_flow_rate": 94.0
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_2",
+        "targets": "Liquid_3",
+        "asp_vol": 20.0,
+        "dis_vol": 20.0,
+        "asp_flow_rate": 7.6,
+        "dis_flow_rate": 7.6
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_5",
+        "targets": "Liquid_2",
+        "asp_vol": 6.0,
+        "dis_vol": 12.0,
+        "asp_flow_rate": 7.6,
+        "dis_flow_rate": 7.6
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_5",
+        "targets": "Liquid_2",
+        "asp_vol": 10.666666666666666,
+        "dis_vol": 12.0,
+        "asp_flow_rate": 7.599999999999999,
+        "dis_flow_rate": 7.6
+      }
+    },
+    {
+      "action": "transfer_liquid",
+      "action_args": {
+        "sources": "Liquid_2",
+        "targets": "Liquid_6",
+        "asp_vol": 12.0,
+        "dis_vol": 10.0,
+        "asp_flow_rate": 7.6,
+        "dis_flow_rate": 7.6
+      }
+    }
+  ],
+  "reagent": {
+    "Liquid_6": {
+      "slot": 1,
+      "well": [
+        "A2"
+      ],
+      "labware": "elution plate"
+    },
+    "Liquid_1": {
+      "slot": 2,
+      "well": [
+        "A1",
+        "A2",
+        "A4"
+      ],
+      "labware": "reagent reservoir"
+    },
+    "Liquid_4": {
+      "slot": 2,
+      "well": [
+        "A1",
+        "A2",
+        "A4"
+      ],
+      "labware": "reagent reservoir"
+    },
+    "Liquid_5": {
+      "slot": 2,
+      "well": [
+        "A1",
+        "A2",
+        "A4"
+      ],
+      "labware": "reagent reservoir"
+    },
+    "Liquid_2": {
+      "slot": 4,
+      "well": [
+        "A2"
+      ],
+      "labware": "TAG1 plate on Magnetic Module GEN2"
+    },
+    "Liquid_3": {
+      "slot": 12,
+      "well": [
+        "A1"
+      ],
+      "labware": "Opentrons Fixed Trash"
+    }
+  }
+}

test/workflow/example_prcxi.json

@@ -0,0 +1,63 @@
+{
+    "steps_info": [
+        {
+            "step_number": 1,
+            "action": "transfer_liquid",
+            "parameters": {
+                "source": "sample supernatant",
+                "target": "antibody-coated well",
+                "volume": 100
+            }
+        },
+        {
+            "step_number": 2,
+            "action": "transfer_liquid",
+            "parameters": {
+                "source": "washing buffer",
+                "target": "antibody-coated well",
+                "volume": 200
+            }
+        },
+        {
+            "step_number": 3,
+            "action": "transfer_liquid",
+            "parameters": {
+                "source": "washing buffer",
+                "target": "antibody-coated well",
+                "volume": 200
+            }
+        },
+        {
+            "step_number": 4,
+            "action": "transfer_liquid",
+            "parameters": {
+                "source": "washing buffer",
+                "target": "antibody-coated well",
+                "volume": 200
+            }
+        },
+        {
+            "step_number": 5,
+            "action": "transfer_liquid",
+            "parameters": {
+                "source": "TMB substrate",
+                "target": "antibody-coated well",
+                "volume": 100
+            }
+        }
+    ],
+    "labware_info": [
+        {"reagent_name": "sample supernatant", "material_name": "96深孔板", "positions": 1},
+        {"reagent_name": "washing buffer", "material_name": "储液槽", "positions": 2},
+        {"reagent_name": "TMB substrate", "material_name": "储液槽", "positions": 3},
+        {"reagent_name": "antibody-coated well", "material_name": "96 细胞培养皿", "positions": 4},
+        {"reagent_name": "", "material_name": "300μL Tip头", "positions": 5},
+        {"reagent_name": "", "material_name": "300μL Tip头", "positions": 6},
+        {"reagent_name": "", "material_name": "300μL Tip头", "positions": 7},
+        {"reagent_name": "", "material_name": "300μL Tip头", "positions": 8},
+        {"reagent_name": "", "material_name": "300μL Tip头", "positions": 9},
+        {"reagent_name": "", "material_name": "300μL Tip头", "positions": 10},
+        {"reagent_name": "", "material_name": "300μL Tip头", "positions": 11},
+        {"reagent_name": "", "material_name": "300μL Tip头", "positions": 13}
+    ]
+}

test/workflow/merge_workflow.py

@@ -0,0 +1,35 @@
+import sys
+from datetime import datetime
+from pathlib import Path
+
+ROOT_DIR = Path(__file__).resolve().parents[2]
+if str(ROOT_DIR) not in sys.path:
+    sys.path.insert(0, str(ROOT_DIR))
+
+import pytest
+
+from unilabos.workflow.convert_from_json import (
+    convert_from_json,
+    normalize_steps as _normalize_steps,
+    normalize_labware as _normalize_labware,
+)
+from unilabos.workflow.common import draw_protocol_graph_with_ports
+
+
+@pytest.mark.parametrize(
+    "protocol_name",
+    [
+        "example_bio",
+        # "bioyond_materials_liquidhandling_1",
+        "example_prcxi",
+    ],
+)
+def test_build_protocol_graph(protocol_name):
+    data_path = Path(__file__).with_name(f"{protocol_name}.json")
+
+    graph = convert_from_json(data_path, workstation_name="PRCXi")
+
+    timestamp = datetime.now().strftime("%Y%m%d_%H%M")
+    output_path = data_path.with_name(f"{protocol_name}_graph_{timestamp}.png")
+    draw_protocol_graph_with_ports(graph, str(output_path))
+    print(graph)