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Refine biomek

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This commit is contained in:
Guangxin Zhang
2025-06-08 20:29:39 +08:00
parent 12c17ec26e
commit 3f4d247127
4 changed files with 36 additions and 3791 deletions
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4
unilabos/devices/liquid_handling/biomek.py
View File

@@ -9,7 +9,7 @@ from pylabrobot.resources import (
Container,
Coordinate,
)
import copy
from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker # type: ignore
from .liquid_handler_abstract import LiquidHandlerAbstract
@@ -570,7 +570,7 @@ class LiquidHandlerBiomek:
if __name__ == "__main__":
print("=== Biomek完整流程测试 ===")
print("包含: 仪器设置 + 完整实验步骤")

9
unilabos/devices/liquid_handling/biomek_test.py
View File

@@ -15,6 +15,7 @@ from typing import List, Sequence, Optional, Union, Literal
import json
import pathlib
from typing import Sequence, Optional, List, Union, Literal
import copy
@@ -351,8 +352,9 @@ class LiquidHandlerBiomek:
"""
items = []
asp_params = self.aspirate_techniques.get(aspirate_techniques, {})
dis_params = self.dispense_techniques.get(dispense_techniques, {})
asp_params = copy.deepcopy(self.aspirate_techniques[aspirate_techniques])
dis_params = copy.deepcopy(self.dispense_techniques[dispense_techniques])
asp_params['Position'] = source
dis_params['Position'] = target
@@ -403,7 +405,9 @@ class LiquidHandlerBiomek:
transfer_params["Solvent"] = 'Water'
transfer_params["TipLocation"] = tip_rack
tmp={'transfer': transfer_params}
self.temp_protocol["steps"].append(tmp)
return
@@ -968,6 +972,7 @@ if __name__ == "__main__":
print(f"步骤 {step['step_number']}: {description}")
if operation == 'transfer':
handler.transfer_biomek(
source=parameters['source'],
target=parameters['target'],

3760
unilabos/devices/liquid_handling/complete_biomek_protocol.json
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File diff suppressed because it is too large Load Diff

54
unilabos/devices/liquid_handling/complete_biomek_protocol_0608.json
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@@ -1326,9 +1326,9 @@
"Pod": "Pod1",
"items": [
{
"Position": "P12",
"Position": "P1",
"Height": -2.0,
"Volume": "40",
"Volume": "50",
"liquidtype": "Well Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -1451,9 +1451,9 @@
"UseExpression": false
},
{
"Position": "P14",
"Position": "P11",
"Height": -2.0,
"Volume": "40",
"Volume": "50",
"liquidtype": "Tip Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -1626,9 +1626,9 @@
"Pod": "Pod1",
"items": [
{
"Position": "P12",
"Position": "P2",
"Height": -2.0,
"Volume": "40",
"Volume": "100",
"liquidtype": "Well Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -1751,9 +1751,9 @@
"UseExpression": false
},
{
"Position": "P14",
"Position": "P11",
"Height": -2.0,
"Volume": "40",
"Volume": "100",
"liquidtype": "Tip Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -1957,7 +1957,7 @@
{
"Position": "P12",
"Height": -2.0,
"Volume": "40",
"Volume": "150",
"liquidtype": "Well Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -2080,9 +2080,9 @@
"UseExpression": false
},
{
"Position": "P14",
"Position": "P22",
"Height": -2.0,
"Volume": "40",
"Volume": "150",
"liquidtype": "Tip Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -2255,9 +2255,9 @@
"Pod": "Pod1",
"items": [
{
"Position": "P12",
"Position": "P3",
"Height": -2.0,
"Volume": "40",
"Volume": "400",
"liquidtype": "Well Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -2380,9 +2380,9 @@
"UseExpression": false
},
{
"Position": "P14",
"Position": "P12",
"Height": -2.0,
"Volume": "40",
"Volume": "400",
"liquidtype": "Tip Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -2595,7 +2595,7 @@
{
"Position": "P12",
"Height": -2.0,
"Volume": "40",
"Volume": "400",
"liquidtype": "Well Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -2718,9 +2718,9 @@
"UseExpression": false
},
{
"Position": "P14",
"Position": "P22",
"Height": -2.0,
"Volume": "40",
"Volume": "400",
"liquidtype": "Tip Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -2893,9 +2893,9 @@
"Pod": "Pod1",
"items": [
{
"Position": "P12",
"Position": "P3",
"Height": -2.0,
"Volume": "40",
"Volume": "400",
"liquidtype": "Well Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -3018,9 +3018,9 @@
"UseExpression": false
},
{
"Position": "P14",
"Position": "P12",
"Height": -2.0,
"Volume": "40",
"Volume": "400",
"liquidtype": "Tip Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -3233,7 +3233,7 @@
{
"Position": "P12",
"Height": -2.0,
"Volume": "40",
"Volume": "400",
"liquidtype": "Well Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -3356,9 +3356,9 @@
"UseExpression": false
},
{
"Position": "P14",
"Position": "P22",
"Height": -2.0,
"Volume": "40",
"Volume": "400",
"liquidtype": "Tip Contents",
"WellsX": 12,
"LabwareClass": "Matrix96_750uL",
@@ -3548,7 +3548,7 @@
"Pod": "Pod1",
"items": [
{
"Position": "P12",
"Position": "P4",
"Height": -2.0,
"Volume": "40",
"liquidtype": "Well Contents",
@@ -3673,7 +3673,7 @@
"UseExpression": false
},
{
"Position": "P14",
"Position": "P13",
"Height": -2.0,
"Volume": "40",
"liquidtype": "Tip Contents",