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Refine biomek

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This commit is contained in:
Guangxin Zhang
2025-06-08 20:29:39 +08:00
parent 12c17ec26e
commit 3f4d247127
4 changed files with 36 additions and 3791 deletions
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2
unilabos/devices/liquid_handling/biomek.py
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@@ -9,7 +9,7 @@ from pylabrobot.resources import (
Container, Container,
Coordinate, Coordinate,
) )
import copy
from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker # type: ignore from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker # type: ignore
from .liquid_handler_abstract import LiquidHandlerAbstract from .liquid_handler_abstract import LiquidHandlerAbstract

9
unilabos/devices/liquid_handling/biomek_test.py
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@@ -15,6 +15,7 @@ from typing import List, Sequence, Optional, Union, Literal
import json import json
import pathlib import pathlib
from typing import Sequence, Optional, List, Union, Literal from typing import Sequence, Optional, List, Union, Literal
import copy
@@ -351,8 +352,9 @@ class LiquidHandlerBiomek:
""" """
items = [] items = []
asp_params = self.aspirate_techniques.get(aspirate_techniques, {}) asp_params = copy.deepcopy(self.aspirate_techniques[aspirate_techniques])
dis_params = self.dispense_techniques.get(dispense_techniques, {}) dis_params = copy.deepcopy(self.dispense_techniques[dispense_techniques])
asp_params['Position'] = source asp_params['Position'] = source
dis_params['Position'] = target dis_params['Position'] = target
@@ -403,8 +405,10 @@ class LiquidHandlerBiomek:
transfer_params["Solvent"] = 'Water' transfer_params["Solvent"] = 'Water'
transfer_params["TipLocation"] = tip_rack transfer_params["TipLocation"] = tip_rack
tmp={'transfer': transfer_params} tmp={'transfer': transfer_params}
self.temp_protocol["steps"].append(tmp) self.temp_protocol["steps"].append(tmp)
return return
def move_biomek( def move_biomek(
@@ -968,6 +972,7 @@ if __name__ == "__main__":
print(f"步骤 {step['step_number']}: {description}") print(f"步骤 {step['step_number']}: {description}")
if operation == 'transfer': if operation == 'transfer':
handler.transfer_biomek( handler.transfer_biomek(
source=parameters['source'], source=parameters['source'],
target=parameters['target'], target=parameters['target'],

3760
unilabos/devices/liquid_handling/complete_biomek_protocol.json
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File diff suppressed because it is too large Load Diff

54
unilabos/devices/liquid_handling/complete_biomek_protocol_0608.json
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@@ -1326,9 +1326,9 @@
"Pod": "Pod1", "Pod": "Pod1",
"items": [ "items": [
{ {
"Position": "P12", "Position": "P1",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "50",
"liquidtype": "Well Contents", "liquidtype": "Well Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -1451,9 +1451,9 @@
"UseExpression": false "UseExpression": false
}, },
{ {
"Position": "P14", "Position": "P11",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "50",
"liquidtype": "Tip Contents", "liquidtype": "Tip Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -1626,9 +1626,9 @@
"Pod": "Pod1", "Pod": "Pod1",
"items": [ "items": [
{ {
"Position": "P12", "Position": "P2",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "100",
"liquidtype": "Well Contents", "liquidtype": "Well Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -1751,9 +1751,9 @@
"UseExpression": false "UseExpression": false
}, },
{ {
"Position": "P14", "Position": "P11",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "100",
"liquidtype": "Tip Contents", "liquidtype": "Tip Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -1957,7 +1957,7 @@
{ {
"Position": "P12", "Position": "P12",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "150",
"liquidtype": "Well Contents", "liquidtype": "Well Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -2080,9 +2080,9 @@
"UseExpression": false "UseExpression": false
}, },
{ {
"Position": "P14", "Position": "P22",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "150",
"liquidtype": "Tip Contents", "liquidtype": "Tip Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -2255,9 +2255,9 @@
"Pod": "Pod1", "Pod": "Pod1",
"items": [ "items": [
{ {
"Position": "P12", "Position": "P3",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "400",
"liquidtype": "Well Contents", "liquidtype": "Well Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -2380,9 +2380,9 @@
"UseExpression": false "UseExpression": false
}, },
{ {
"Position": "P14", "Position": "P12",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "400",
"liquidtype": "Tip Contents", "liquidtype": "Tip Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -2595,7 +2595,7 @@
{ {
"Position": "P12", "Position": "P12",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "400",
"liquidtype": "Well Contents", "liquidtype": "Well Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -2718,9 +2718,9 @@
"UseExpression": false "UseExpression": false
}, },
{ {
"Position": "P14", "Position": "P22",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "400",
"liquidtype": "Tip Contents", "liquidtype": "Tip Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -2893,9 +2893,9 @@
"Pod": "Pod1", "Pod": "Pod1",
"items": [ "items": [
{ {
"Position": "P12", "Position": "P3",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "400",
"liquidtype": "Well Contents", "liquidtype": "Well Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -3018,9 +3018,9 @@
"UseExpression": false "UseExpression": false
}, },
{ {
"Position": "P14", "Position": "P12",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "400",
"liquidtype": "Tip Contents", "liquidtype": "Tip Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -3233,7 +3233,7 @@
{ {
"Position": "P12", "Position": "P12",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "400",
"liquidtype": "Well Contents", "liquidtype": "Well Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -3356,9 +3356,9 @@
"UseExpression": false "UseExpression": false
}, },
{ {
"Position": "P14", "Position": "P22",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "400",
"liquidtype": "Tip Contents", "liquidtype": "Tip Contents",
"WellsX": 12, "WellsX": 12,
"LabwareClass": "Matrix96_750uL", "LabwareClass": "Matrix96_750uL",
@@ -3548,7 +3548,7 @@
"Pod": "Pod1", "Pod": "Pod1",
"items": [ "items": [
{ {
"Position": "P12", "Position": "P4",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "40",
"liquidtype": "Well Contents", "liquidtype": "Well Contents",
@@ -3673,7 +3673,7 @@
"UseExpression": false "UseExpression": false
}, },
{ {
"Position": "P14", "Position": "P13",
"Height": -2.0, "Height": -2.0,
"Volume": "40", "Volume": "40",
"liquidtype": "Tip Contents", "liquidtype": "Tip Contents",