mirror of
https://github.com/dptech-corp/Uni-Lab-OS.git
synced 2025-12-17 13:01:12 +00:00
Merge branch 'main' into dev
# Conflicts: # .conda/recipe.yaml # .github/workflows/conda-pack-build.yml # recipes/msgs/recipe.yaml # recipes/unilabos/recipe.yaml # scripts/verify_installation.py # setup.py # unilabos/app/main.py # unilabos/app/mq.py # unilabos/app/register.py # unilabos/compile/heatchill_protocol.py # unilabos/compile/separate_protocol.py # unilabos/config/config.py # unilabos/devices/pump_and_valve/runze_backbone.py # unilabos/devices/pump_and_valve/runze_multiple_backbone.py # unilabos/registry/devices/characterization_chromatic.yaml # unilabos/registry/devices/liquid_handler.yaml # unilabos/registry/devices/pump_and_valve.yaml # unilabos/registry/devices/robot_arm.yaml # unilabos/registry/devices/robot_linear_motion.yaml # unilabos/registry/devices/work_station.yaml # unilabos/registry/registry.py # unilabos/registry/resources/organic/workstation.yaml # unilabos/resources/plr_additional_res_reg.py # unilabos/ros/nodes/base_device_node.py # unilabos/ros/nodes/presets/host_node.py # unilabos/ros/nodes/presets/workstation.py # unilabos/ros/nodes/resource_tracker.py # unilabos/utils/environment_check.py # unilabos_msgs/package.xml
This commit is contained in:
98
.github/workflows/deploy-docs.yml
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98
.github/workflows/deploy-docs.yml
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name: Deploy Docs
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on:
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push:
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branches: [main]
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pull_request:
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branches: [main]
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workflow_dispatch:
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inputs:
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branch:
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description: '要部署文档的分支'
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required: false
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default: 'main'
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type: string
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deploy_to_pages:
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description: '是否部署到 GitHub Pages'
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required: false
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default: true
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type: boolean
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# 设置 GITHUB_TOKEN 权限以部署到 GitHub Pages
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permissions:
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contents: read
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pages: write
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id-token: write
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# 只允许一个并发部署,跳过正在进行和最新排队之间的运行
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# 但是不取消正在进行的运行,因为我们希望允许这些生产部署完成
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concurrency:
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group: 'pages'
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cancel-in-progress: false
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jobs:
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# Build documentation
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build:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout code
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uses: actions/checkout@v4
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with:
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ref: ${{ github.event.inputs.branch || github.ref }}
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- name: Setup Python environment
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uses: actions/setup-python@v5
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with:
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python-version: '3.10'
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- name: Install system dependencies
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run: |
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sudo apt-get update
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sudo apt-get install -y pandoc
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- name: Install Python dependencies
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run: |
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python -m pip install --upgrade pip
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# Install package in development mode to get version info
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pip install -e .
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# Install documentation dependencies
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pip install -r docs/requirements.txt
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- name: Setup Pages
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id: pages
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uses: actions/configure-pages@v4
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if: github.ref == 'refs/heads/main' || (github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
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- name: Build Sphinx documentation
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run: |
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cd docs
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# Clean previous builds
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rm -rf _build
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# Build HTML documentation
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python -m sphinx -b html . _build/html -v
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- name: Check build results
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run: |
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echo "Documentation build completed, checking output directory:"
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ls -la docs/_build/html/
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echo "Checking for index.html:"
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test -f docs/_build/html/index.html && echo "✓ index.html exists" || echo "✗ index.html missing"
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- name: Upload build artifacts
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uses: actions/upload-pages-artifact@v3
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if: github.ref == 'refs/heads/main' || (github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
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with:
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path: docs/_build/html
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# Deploy to GitHub Pages
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deploy:
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if: github.ref == 'refs/heads/main' || (github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
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environment:
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name: github-pages
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url: ${{ steps.deployment.outputs.page_url }}
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runs-on: ubuntu-latest
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needs: build
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steps:
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- name: Deploy to GitHub Pages
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id: deployment
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uses: actions/deploy-pages@v4
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@@ -31,7 +31,7 @@ Join the [Intelligent Organic Chemistry Synthesis Competition](https://bohrium.d
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Detailed documentation can be found at:
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- [Online Documentation](https://readthedocs.dp.tech/Uni-Lab/v0.8.0/)
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- [Online Documentation](https://dptech-corp.github.io/Uni-Lab-OS/)
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## Quick Start
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@@ -55,7 +55,7 @@ pip install .
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3. Start Uni-Lab System:
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Please refer to [Documentation - Boot Examples](https://readthedocs.dp.tech/Uni-Lab/v0.8.0/boot_examples/index.html)
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Please refer to [Documentation - Boot Examples](https://dptech-corp.github.io/Uni-Lab-OS/boot_examples/index.html)
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## Message Format
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@@ -31,7 +31,7 @@ Uni-Lab-OS 是一个用于实验室自动化的综合平台,旨在连接和控
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详细文档可在以下位置找到:
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- [在线文档](https://readthedocs.dp.tech/Uni-Lab/v0.8.0/)
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- [在线文档](https://dptech-corp.github.io/Uni-Lab-OS/)
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## 快速开始
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@@ -57,7 +57,7 @@ pip install .
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3. 启动 Uni-Lab 系统:
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请见[文档-启动样例](https://readthedocs.dp.tech/Uni-Lab/v0.8.0/boot_examples/index.html)
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请见[文档-启动样例](https://dptech-corp.github.io/Uni-Lab-OS/boot_examples/index.html)
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## 消息格式
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13
docs/requirements.txt
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13
docs/requirements.txt
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# Sphinx文档构建依赖
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sphinx>=7.0.0
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sphinx-rtd-theme>=2.0.0
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myst-parser>=2.0.0
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# 用于支持Jupyter notebook文档
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myst-nb>=1.0.0
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# 用于代码复制按钮
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sphinx-copybutton>=0.5.0
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# 用于自动摘要生成
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sphinx-autobuild>=2024.2.4
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@@ -4741,7 +4741,6 @@ virtual_stirrer:
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status_types:
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current_speed: float
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current_vessel: str
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device_info: dict
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is_stirring: bool
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max_speed: float
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min_speed: float
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@@ -4776,8 +4775,6 @@ virtual_stirrer:
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type: number
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current_vessel:
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type: string
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device_info:
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type: object
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is_stirring:
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type: boolean
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max_speed:
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@@ -4799,7 +4796,6 @@ virtual_stirrer:
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- remaining_time
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- max_speed
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- min_speed
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- device_info
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type: object
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version: 1.0.0
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virtual_transfer_pump:
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@@ -1,8 +1,13 @@
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import json
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import time
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import traceback
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<<<<<<<< HEAD:unilabos/ros/nodes/presets/workstation.py
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from pprint import pformat
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from typing import List, Dict, Any, Optional, TYPE_CHECKING
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========
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from pprint import pprint, saferepr, pformat
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from typing import Union
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>>>>>>>> main:unilabos/ros/nodes/presets/protocol_node.py
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import rclpy
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from rosidl_runtime_py import message_to_ordereddict
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@@ -193,8 +198,13 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
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execute_callback=self._create_protocol_execute_callback(action_name, protocol_steps_generator),
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callback_group=ReentrantCallbackGroup(),
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)
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<<<<<<<< HEAD:unilabos/ros/nodes/presets/workstation.py
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self.lab_logger().trace(f"发布动作: {action_name}, 类型: {str_action_type}")
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return
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========
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self.lab_logger().trace(f"发布动作: {action_name}, 类型: {str_action_type}")
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>>>>>>>> main:unilabos/ros/nodes/presets/protocol_node.py
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def _create_protocol_execute_callback(self, protocol_name, protocol_steps_generator):
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async def execute_protocol(goal_handle: ServerGoalHandle):
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@@ -245,10 +255,15 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
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logs.append(step)
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elif isinstance(step, list):
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logs.append(step)
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<<<<<<<< HEAD:unilabos/ros/nodes/presets/workstation.py
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self.lab_logger().info(
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f"Goal received: {protocol_kwargs}, running steps: "
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f"{json.dumps(logs, indent=4, ensure_ascii=False)}"
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)
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========
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self.lab_logger().info(f"Goal received: {protocol_kwargs}, running steps: "
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f"{json.dumps(logs, indent=4, ensure_ascii=False)}")
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>>>>>>>> main:unilabos/ros/nodes/presets/protocol_node.py
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time_start = time.time()
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time_overall = 100
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@@ -263,6 +278,7 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
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time.sleep(action["action_kwargs"]["time"])
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step_results.append({"step": i + 1, "action": "wait", "result": "completed"})
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else:
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<<<<<<<< HEAD:unilabos/ros/nodes/presets/workstation.py
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try:
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result = await self.execute_single_action(**action)
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step_results.append({"step": i + 1, "action": action["action_name"], "result": result})
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@@ -273,6 +289,13 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
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step_results.append(
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{"step": i + 1, "action": action["action_name"], "result": ex.args[0]}
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)
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========
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result = await self.execute_single_action(**action)
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step_results.append({"step": i + 1, "action": action["action_name"], "result": result})
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ret_info = json.loads(getattr(result, "return_info", "{}"))
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if not ret_info.get("suc", False):
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raise RuntimeError(f"Step {i + 1} failed.")
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>>>>>>>> main:unilabos/ros/nodes/presets/protocol_node.py
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elif isinstance(action, list):
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# 如果是并行动作,同时执行
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actions = action
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@@ -310,6 +333,7 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
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except Exception as e:
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# 捕获并记录错误信息
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<<<<<<<< HEAD:unilabos/ros/nodes/presets/workstation.py
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str_step_results = [
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{
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k: dict(message_to_ordereddict(v)) if k == "result" and hasattr(v, "SLOT_TYPES") else v
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@@ -317,6 +341,9 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
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}
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for i in step_results
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]
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========
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str_step_results = [{k: dict(message_to_ordereddict(v)) if k == "result" and hasattr(v, "SLOT_TYPES") else v for k, v in i.items()} for i in step_results]
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>>>>>>>> main:unilabos/ros/nodes/presets/protocol_node.py
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execution_error = f"{traceback.format_exc()}\n\nStep Result: {pformat(str_step_results)}"
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execution_success = False
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self.lab_logger().error(f"协议 {protocol_name} 执行出错: {str(e)} \n{traceback.format_exc()}")
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