feat(bioyond_studio): 添加项目API接口支持及优化物料管理功能

添加通用项目API接口方法(_post_project_api, _delete_project_api)用于与LIMS系统交互
实现compute_experiment_design方法用于实验设计计算
新增brief_step_parameters等订单相关接口方法
优化物料转移逻辑,增加异步任务处理
扩展BioyondV1RPC类,添加批量物料操作、订单状态管理等功能
This commit is contained in:
ZiWei
2025-11-18 18:57:47 +08:00
committed by Xuwznln
parent d39662f65f
commit 931614fe64
3 changed files with 1020 additions and 111 deletions

View File

@@ -192,6 +192,23 @@ class BioyondV1RPC(BaseRequest):
return []
return str(response.get("data", {}))
def material_type_list(self) -> list:
"""查询物料类型列表
返回值:
list: 物料类型数组,失败返回空列表
"""
response = self.post(
url=f'{self.host}/api/lims/storage/material-type-list',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": {},
})
if not response or response['code'] != 1:
return []
return response.get("data", [])
def material_inbound(self, material_id: str, location_id: str) -> dict:
"""
描述:指定库位入库一个物料
@@ -221,6 +238,26 @@ class BioyondV1RPC(BaseRequest):
# 入库成功时,即使没有 data 字段,也返回成功标识
return response.get("data") or {"success": True}
def batch_inbound(self, inbound_items: List[Dict[str, Any]]) -> int:
"""批量入库物料
参数:
inbound_items: 入库条目列表,每项包含 materialId/locationId/quantity 等
返回值:
int: 成功返回1失败返回0
"""
response = self.post(
url=f'{self.host}/api/lims/storage/batch-inbound',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": inbound_items,
})
if not response or response['code'] != 1:
return 0
return response.get("code", 0)
def delete_material(self, material_id: str) -> dict:
"""
描述:删除尚未入库的物料
@@ -289,6 +326,66 @@ class BioyondV1RPC(BaseRequest):
return None
return response
def batch_outbound(self, outbound_items: List[Dict[str, Any]]) -> int:
"""批量出库物料
参数:
outbound_items: 出库条目列表,每项包含 materialId/locationId/quantity 等
返回值:
int: 成功返回1失败返回0
"""
response = self.post(
url=f'{self.host}/api/lims/storage/batch-outbound',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": outbound_items,
})
if not response or response['code'] != 1:
return 0
return response.get("code", 0)
def material_info(self, material_id: str) -> dict:
"""查询物料详情
参数:
material_id: 物料ID
返回值:
dict: 物料信息字典,失败返回空字典
"""
response = self.post(
url=f'{self.host}/api/lims/storage/material-info',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": material_id,
})
if not response or response['code'] != 1:
return {}
return response.get("data", {})
def reset_location(self, location_id: str) -> int:
"""复位库位
参数:
location_id: 库位ID
返回值:
int: 成功返回1失败返回0
"""
response = self.post(
url=f'{self.host}/api/lims/storage/reset-location',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": location_id,
})
if not response or response['code'] != 1:
return 0
return response.get("code", 0)
# ==================== 工作流查询相关接口 ====================
def query_workflow(self, json_str: str) -> dict:
@@ -332,6 +429,66 @@ class BioyondV1RPC(BaseRequest):
return {}
return response.get("data", {})
def split_workflow_list(self, params: Dict[str, Any]) -> dict:
"""查询可拆分工作流列表
参数:
params: 查询条件参数
返回值:
dict: 返回数据字典,失败返回空字典
"""
response = self.post(
url=f'{self.host}/api/lims/workflow/split-workflow-list',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": params,
})
if not response or response['code'] != 1:
return {}
return response.get("data", {})
def merge_workflow(self, data: Dict[str, Any]) -> dict:
"""合并工作流(无参数版)
参数:
data: 合并请求体,包含待合并的子工作流信息
返回值:
dict: 合并结果,失败返回空字典
"""
response = self.post(
url=f'{self.host}/api/lims/workflow/merge-workflow',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": data,
})
if not response or response['code'] != 1:
return {}
return response.get("data", {})
def merge_workflow_with_parameters(self, data: Dict[str, Any]) -> dict:
"""合并工作流(携带参数)
参数:
data: 合并请求体,包含 name、workflows 以及 stepParameters 等
返回值:
dict: 合并结果,失败返回空字典
"""
response = self.post(
url=f'{self.host}/api/lims/workflow/merge-workflow-with-parameters',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": data,
})
if not response or response['code'] != 1:
return {}
return response.get("data", {})
def validate_workflow_parameters(self, workflows: List[Dict[str, Any]]) -> Dict[str, Any]:
"""验证工作流参数格式"""
try:
@@ -494,35 +651,34 @@ class BioyondV1RPC(BaseRequest):
return {}
return response.get("data", {})
def order_report(self, json_str: str) -> dict:
"""
描述:查询某个任务明细
json_str 格式为JSON字符串:
'{"order_id": "order123"}'
"""
try:
data = json.loads(json_str)
order_id = data.get("order_id", "")
except json.JSONDecodeError:
return {}
def order_report(self, order_id: str) -> dict:
"""查询订单报告
参数:
order_id: 订单ID
返回值:
dict: 报告数据,失败返回空字典
"""
response = self.post(
url=f'{self.host}/api/lims/order/project-order-report',
url=f'{self.host}/api/lims/order/order-report',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": order_id,
})
if not response or response['code'] != 1:
return {}
return response.get("data", {})
def order_takeout(self, json_str: str) -> int:
"""
描述:取出任务产物
json_str 格式为JSON字符串:
'{"order_id": "order123", "preintake_id": "preintake123"}'
"""取出任务产物
参数:
json_str: JSON字符串包含 order_id 与 preintake_id
返回值:
int: 成功返回1失败返回0
"""
try:
data = json.loads(json_str)
@@ -545,14 +701,15 @@ class BioyondV1RPC(BaseRequest):
return 0
return response.get("code", 0)
def sample_waste_removal(self, order_id: str) -> dict:
"""
样品/废料取出接口
"""样品/废料取出
参数:
- order_id: 订单ID
order_id: 订单ID
返回: 取出结果
返回:
dict: 取出结果,失败返回空字典
"""
params = {"orderId": order_id}
@@ -574,10 +731,13 @@ class BioyondV1RPC(BaseRequest):
return response.get("data", {})
def cancel_order(self, json_str: str) -> bool:
"""
描述:取消指定任务
json_str 格式为JSON字符串:
'{"order_id": "order123"}'
"""取消指定任务
参数:
json_str: JSON字符串包含 order_id
返回值:
bool: 成功返回 True失败返回 False
"""
try:
data = json.loads(json_str)
@@ -597,6 +757,126 @@ class BioyondV1RPC(BaseRequest):
return False
return True
def cancel_experiment(self, order_id: str) -> int:
"""取消指定实验
参数:
order_id: 订单ID
返回值:
int: 成功返回1失败返回0
"""
response = self.post(
url=f'{self.host}/api/lims/order/cancel-experiment',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": order_id,
})
if not response or response['code'] != 1:
return 0
return response.get("code", 0)
def batch_cancel_experiment(self, order_ids: List[str]) -> int:
"""批量取消实验
参数:
order_ids: 订单ID列表
返回值:
int: 成功返回1失败返回0
"""
response = self.post(
url=f'{self.host}/api/lims/order/batch-cancel-experiment',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": order_ids,
})
if not response or response['code'] != 1:
return 0
return response.get("code", 0)
def gantts_by_order_id(self, order_id: str) -> dict:
"""查询订单甘特图数据
参数:
order_id: 订单ID
返回值:
dict: 甘特数据,失败返回空字典
"""
response = self.post(
url=f'{self.host}/api/lims/order/gantts-by-order-id',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": order_id,
})
if not response or response['code'] != 1:
return {}
return response.get("data", {})
def simulation_gantt_by_order_id(self, order_id: str) -> dict:
"""查询订单模拟甘特图数据
参数:
order_id: 订单ID
返回值:
dict: 模拟甘特数据,失败返回空字典
"""
response = self.post(
url=f'{self.host}/api/lims/order/simulation-gantt-by-order-id',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": order_id,
})
if not response or response['code'] != 1:
return {}
return response.get("data", {})
def reset_order_status(self, order_id: str) -> int:
"""复位订单状态
参数:
order_id: 订单ID
返回值:
int: 成功返回1失败返回0
"""
response = self.post(
url=f'{self.host}/api/lims/order/reset-order-status',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": order_id,
})
if not response or response['code'] != 1:
return 0
return response.get("code", 0)
def gantt_with_simulation_by_order_id(self, order_id: str) -> dict:
"""查询订单甘特与模拟联合数据
参数:
order_id: 订单ID
返回值:
dict: 联合数据,失败返回空字典
"""
response = self.post(
url=f'{self.host}/api/lims/order/gantt-with-simulation-by-order-id',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": order_id,
})
if not response or response['code'] != 1:
return {}
return response.get("data", {})
# ==================== 设备管理相关接口 ====================
def device_list(self, json_str: str = "") -> list:
@@ -628,9 +908,13 @@ class BioyondV1RPC(BaseRequest):
return response.get("data", [])
def device_operation(self, json_str: str) -> int:
"""
描述:操作设备
json_str 格式为JSON字符串
"""设备操作
参数:
json_str: JSON字符串包含 device_no/operationType/operationParams
返回值:
int: 成功返回1失败返回0
"""
try:
data = json.loads(json_str)
@@ -643,7 +927,7 @@ class BioyondV1RPC(BaseRequest):
return 0
response = self.post(
url=f'{self.host}/api/lims/device/device-operation',
url=f'{self.host}/api/lims/device/execute-operation',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
@@ -654,9 +938,30 @@ class BioyondV1RPC(BaseRequest):
return 0
return response.get("code", 0)
def reset_devices(self) -> int:
"""复位设备集合
返回值:
int: 成功返回1失败返回0
"""
response = self.post(
url=f'{self.host}/api/lims/device/reset-devices',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
})
if not response or response['code'] != 1:
return 0
return response.get("code", 0)
# ==================== 调度器相关接口 ====================
def scheduler_status(self) -> dict:
"""查询调度器状态
返回值:
dict: 包含 schedulerStatus/hasTask/creationTime 等
"""
response = self.post(
url=f'{self.host}/api/lims/scheduler/scheduler-status',
params={
@@ -669,7 +974,7 @@ class BioyondV1RPC(BaseRequest):
return response.get("data", {})
def scheduler_start(self) -> int:
"""描述:启动调度器"""
"""启动调度器"""
response = self.post(
url=f'{self.host}/api/lims/scheduler/start',
params={
@@ -682,7 +987,7 @@ class BioyondV1RPC(BaseRequest):
return response.get("code", 0)
def scheduler_pause(self) -> int:
"""描述:暂停调度器"""
"""暂停调度器"""
response = self.post(
url=f'{self.host}/api/lims/scheduler/pause',
params={
@@ -694,8 +999,21 @@ class BioyondV1RPC(BaseRequest):
return 0
return response.get("code", 0)
def scheduler_smart_pause(self) -> int:
"""智能暂停调度器"""
response = self.post(
url=f'{self.host}/api/lims/scheduler/smart-pause',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
})
if not response or response['code'] != 1:
return 0
return response.get("code", 0)
def scheduler_continue(self) -> int:
"""描述:继续调度器"""
"""继续调度器"""
response = self.post(
url=f'{self.host}/api/lims/scheduler/continue',
params={
@@ -708,7 +1026,7 @@ class BioyondV1RPC(BaseRequest):
return response.get("code", 0)
def scheduler_stop(self) -> int:
"""描述:停止调度器"""
"""停止调度器"""
response = self.post(
url=f'{self.host}/api/lims/scheduler/stop',
params={
@@ -721,7 +1039,7 @@ class BioyondV1RPC(BaseRequest):
return response.get("code", 0)
def scheduler_reset(self) -> int:
"""描述:复位调度器"""
"""复位调度器"""
response = self.post(
url=f'{self.host}/api/lims/scheduler/reset',
params={
@@ -733,6 +1051,26 @@ class BioyondV1RPC(BaseRequest):
return 0
return response.get("code", 0)
def scheduler_reply_error_handling(self, data: Dict[str, Any]) -> int:
"""调度错误处理回复
参数:
data: 错误处理参数
返回值:
int: 成功返回1失败返回0
"""
response = self.post(
url=f'{self.host}/api/lims/scheduler/reply-error-handling',
params={
"apiKey": self.api_key,
"requestTime": self.get_current_time_iso8601(),
"data": data,
})
if not response or response['code'] != 1:
return 0
return response.get("code", 0)
# ==================== 辅助方法 ====================
def _load_material_cache(self):
@@ -796,3 +1134,23 @@ class BioyondV1RPC(BaseRequest):
def get_available_materials(self):
"""获取所有可用的材料名称列表"""
return list(self.material_cache.keys())
def get_scheduler_state(self) -> Optional[MachineState]:
"""将调度状态字符串映射为枚举值
返回值:
Optional[MachineState]: 映射后的枚举,失败返回 None
"""
data = self.scheduler_status()
if not isinstance(data, dict):
return None
status = data.get("schedulerStatus")
mapping = {
"Init": MachineState.INITIAL,
"Stop": MachineState.STOPPED,
"Running": MachineState.RUNNING,
"Pause": MachineState.PAUSED,
"ErrorPause": MachineState.ERROR_PAUSED,
"ErrorStop": MachineState.ERROR_STOPPED,
}
return mapping.get(status)

View File

@@ -1,11 +1,17 @@
from datetime import datetime
import json
import time
from typing import Optional, Dict, Any
from typing import Optional, Dict, Any, List
import requests
from unilabos.devices.workstation.bioyond_studio.config import API_CONFIG
from unilabos.devices.workstation.bioyond_studio.bioyond_rpc import BioyondException
from unilabos.devices.workstation.bioyond_studio.station import BioyondWorkstation
from unilabos.ros.nodes.base_device_node import ROS2DeviceNode, BaseROS2DeviceNode
import json
import sys
from pathlib import Path
import importlib
class BioyondDispensingStation(BioyondWorkstation):
def __init__(
@@ -28,6 +34,108 @@ class BioyondDispensingStation(BioyondWorkstation):
# 用于跟踪任务完成状态的字典: {orderCode: {status, order_id, timestamp}}
self.order_completion_status = {}
def _post_project_api(self, endpoint: str, data: Any) -> Dict[str, Any]:
"""项目接口通用POST调用
参数:
endpoint: 接口路径(例如 /api/lims/order/brief-step-paramerers
data: 请求体中的 data 字段内容
返回:
dict: 服务端响应,失败时返回 {code:0,message,...}
"""
request_data = {
"apiKey": API_CONFIG["api_key"],
"requestTime": self.hardware_interface.get_current_time_iso8601(),
"data": data
}
try:
response = requests.post(
f"{self.hardware_interface.host}{endpoint}",
json=request_data,
headers={"Content-Type": "application/json"},
timeout=30
)
result = response.json()
return result if isinstance(result, dict) else {"code": 0, "message": "非JSON响应"}
except json.JSONDecodeError:
return {"code": 0, "message": "非JSON响应"}
except requests.exceptions.Timeout:
return {"code": 0, "message": "请求超时"}
except requests.exceptions.RequestException as e:
return {"code": 0, "message": str(e)}
def _delete_project_api(self, endpoint: str, data: Any) -> Dict[str, Any]:
"""项目接口通用DELETE调用
参数:
endpoint: 接口路径(例如 /api/lims/order/workflows
data: 请求体中的 data 字段内容
返回:
dict: 服务端响应,失败时返回 {code:0,message,...}
"""
request_data = {
"apiKey": API_CONFIG["api_key"],
"requestTime": self.hardware_interface.get_current_time_iso8601(),
"data": data
}
try:
response = requests.delete(
f"{self.hardware_interface.host}{endpoint}",
json=request_data,
headers={"Content-Type": "application/json"},
timeout=30
)
result = response.json()
return result if isinstance(result, dict) else {"code": 0, "message": "非JSON响应"}
except json.JSONDecodeError:
return {"code": 0, "message": "非JSON响应"}
except requests.exceptions.Timeout:
return {"code": 0, "message": "请求超时"}
except requests.exceptions.RequestException as e:
return {"code": 0, "message": str(e)}
def compute_experiment_design(
self,
ratio: dict,
wt_percent: str = "0.25",
m_tot: str = "70",
titration_percent: str = "0.03",
) -> dict:
try:
if isinstance(ratio, str):
try:
ratio = json.loads(ratio)
except Exception:
ratio = {}
root = str(Path(__file__).resolve().parents[3])
if root not in sys.path:
sys.path.append(root)
try:
mod = importlib.import_module("tem.compute")
except Exception as e:
raise BioyondException(f"无法导入计算模块: {e}")
try:
wp = float(wt_percent) if isinstance(wt_percent, str) else wt_percent
mt = float(m_tot) if isinstance(m_tot, str) else m_tot
tp = float(titration_percent) if isinstance(titration_percent, str) else titration_percent
except Exception as e:
raise BioyondException(f"参数解析失败: {e}")
res = mod.generate_experiment_design(ratio=ratio, wt_percent=wp, m_tot=mt, titration_percent=tp)
out = {
"solutions": res.get("solutions", []),
"titration": res.get("titration", {}),
"solvents": res.get("solvents", {}),
"feeding_order": res.get("feeding_order", []),
"return_info": json.dumps(res, ensure_ascii=False)
}
return out
except BioyondException:
raise
except Exception as e:
raise BioyondException(str(e))
# 90%10%小瓶投料任务创建方法
def create_90_10_vial_feeding_task(self,
order_name: str = None,
@@ -649,6 +757,40 @@ class BioyondDispensingStation(BioyondWorkstation):
self.hardware_interface._logger.error(error_msg)
raise BioyondException(error_msg)
def brief_step_parameters(self, data: Dict[str, Any]) -> Dict[str, Any]:
"""获取简要步骤参数(站点项目接口)
参数:
data: 查询参数字典
返回值:
dict: 接口返回数据
"""
return self._post_project_api("/api/lims/order/brief-step-paramerers", data)
def project_order_report(self, order_id: str) -> Dict[str, Any]:
"""查询项目端订单报告(兼容旧路径)
参数:
order_id: 订单ID
返回值:
dict: 报告数据
"""
return self._post_project_api("/api/lims/order/project-order-report", order_id)
def workflow_sample_locations(self, workflow_id: str) -> Dict[str, Any]:
"""查询工作流样品库位(站点项目接口)
参数:
workflow_id: 工作流ID
返回值:
dict: 位置信息数据
"""
return self._post_project_api("/api/lims/storage/workflow-sample-locations", workflow_id)
# 批量创建90%10%小瓶投料任务
def batch_create_90_10_vial_feeding_tasks(self,
titration,
@@ -779,8 +921,38 @@ class BioyondDispensingStation(BioyondWorkstation):
self.hardware_interface._logger.error(error_msg)
raise BioyondException(error_msg)
def _extract_actuals_from_report(self, report) -> Dict[str, Any]:
data = report.get('data') if isinstance(report, dict) else None
actual_target_weigh = None
actual_volume = None
if data:
extra = data.get('extraProperties') or {}
if isinstance(extra, dict):
for v in extra.values():
obj = None
try:
obj = json.loads(v) if isinstance(v, str) else v
except Exception:
obj = None
if isinstance(obj, dict):
tw = obj.get('targetWeigh')
vol = obj.get('volume')
if tw is not None:
try:
actual_target_weigh = float(tw)
except Exception:
pass
if vol is not None:
try:
actual_volume = float(vol)
except Exception:
pass
return {
'actualTargetWeigh': actual_target_weigh,
'actualVolume': actual_volume
}
# 等待多个任务完成并获取实验报告
def wait_for_multiple_orders_and_get_reports(self,
batch_create_result: str = None,
timeout: int = 7200,
@@ -902,6 +1074,7 @@ class BioyondDispensingStation(BioyondWorkstation):
"status": "timeout",
"completion_status": None,
"report": None,
"extracted": None,
"elapsed_time": elapsed_time
})
@@ -921,8 +1094,7 @@ class BioyondDispensingStation(BioyondWorkstation):
# 获取实验报告
try:
report_query = json.dumps({"order_id": order_id})
report = self.hardware_interface.order_report(report_query)
report = self.project_order_report(order_id)
if not report:
self.hardware_interface._logger.warning(
@@ -940,6 +1112,7 @@ class BioyondDispensingStation(BioyondWorkstation):
"status": "completed",
"completion_status": completion_info.get('status'),
"report": report,
"extracted": self._extract_actuals_from_report(report),
"elapsed_time": elapsed_time
})
@@ -959,6 +1132,7 @@ class BioyondDispensingStation(BioyondWorkstation):
"status": "error",
"completion_status": completion_info.get('status'),
"report": None,
"extracted": None,
"error": str(e),
"elapsed_time": elapsed_time
})
@@ -1052,6 +1226,266 @@ class BioyondDispensingStation(BioyondWorkstation):
self.hardware_interface._logger.error(f"处理任务完成报送失败: {e}")
return {"processed": False, "error": str(e)}
def transfer_materials_to_reaction_station(
self,
target_device_id: str,
transfer_groups: list
) -> dict:
"""
将配液站完成的物料转移到指定反应站的堆栈库位
支持多组转移任务,每组包含物料名称、目标堆栈和目标库位
Args:
target_device_id: 目标反应站设备ID(所有转移组使用同一个设备)
transfer_groups: 转移任务组列表,每组包含:
- materials: 物料名称(字符串,将通过RPC查询)
- target_stack: 目标堆栈名称(如"堆栈1左")
- target_sites: 目标库位(如"A01")
Returns:
dict: 转移结果
{
"success": bool,
"total_groups": int,
"successful_groups": int,
"failed_groups": int,
"target_device_id": str,
"details": [...]
}
"""
try:
# 验证参数
if not target_device_id:
raise ValueError("目标设备ID不能为空")
if not transfer_groups:
raise ValueError("转移任务组列表不能为空")
if not isinstance(transfer_groups, list):
raise ValueError("transfer_groups必须是列表类型")
# 标准化设备ID格式: 确保以 /devices/ 开头
if not target_device_id.startswith("/devices/"):
if target_device_id.startswith("/"):
target_device_id = f"/devices{target_device_id}"
else:
target_device_id = f"/devices/{target_device_id}"
self.hardware_interface._logger.info(
f"目标设备ID标准化为: {target_device_id}"
)
self.hardware_interface._logger.info(
f"开始执行批量物料转移: {len(transfer_groups)}组任务 -> {target_device_id}"
)
from .config import WAREHOUSE_MAPPING
results = []
successful_count = 0
failed_count = 0
for idx, group in enumerate(transfer_groups, 1):
try:
# 提取参数
material_name = group.get("materials", "")
target_stack = group.get("target_stack", "")
target_sites = group.get("target_sites", "")
# 验证必填参数
if not material_name:
raise ValueError(f"{idx}组: 物料名称不能为空")
if not target_stack:
raise ValueError(f"{idx}组: 目标堆栈不能为空")
if not target_sites:
raise ValueError(f"{idx}组: 目标库位不能为空")
self.hardware_interface._logger.info(
f"处理第{idx}组转移: {material_name} -> "
f"{target_device_id}/{target_stack}/{target_sites}"
)
# 通过物料名称从deck获取ResourcePLR对象
try:
material_resource = self.deck.get_resource(material_name)
if not material_resource:
raise ValueError(f"在deck中未找到物料: {material_name}")
self.hardware_interface._logger.info(
f"从deck获取到物料 {material_name}: {material_resource}"
)
except Exception as e:
raise ValueError(
f"获取物料 {material_name} 失败: {str(e)}请确认物料已正确加载到deck中"
)
# 验证目标堆栈是否存在
if target_stack not in WAREHOUSE_MAPPING:
raise ValueError(
f"未知的堆栈名称: {target_stack}"
f"可选值: {list(WAREHOUSE_MAPPING.keys())}"
)
# 验证库位是否有效
stack_sites = WAREHOUSE_MAPPING[target_stack].get("site_uuids", {})
if target_sites not in stack_sites:
raise ValueError(
f"库位 {target_sites} 不存在于堆栈 {target_stack} 中,"
f"可选库位: {list(stack_sites.keys())}"
)
# 获取目标库位的UUID
target_site_uuid = stack_sites[target_sites]
if not target_site_uuid:
raise ValueError(
f"库位 {target_sites} 的 UUID 未配置,请在 WAREHOUSE_MAPPING 中完善"
)
# 目标位点包含UUID
future = ROS2DeviceNode.run_async_func(
self._ros_node.get_resource_with_dir,
True,
**{
"resource_id": f"/reaction_station_bioyond/Bioyond_Deck/{target_stack}",
"with_children": True,
},
)
# 等待异步完成后再获取结果
if not future:
raise ValueError(f"获取目标堆栈资源future无效: {target_stack}")
while not future.done():
time.sleep(0.1)
target_site_resource = future.result()
# 调用父类的 transfer_resource_to_another 方法
# 传入ResourcePLR对象和目标位点资源
future = self.transfer_resource_to_another(
resource=[material_resource],
mount_resource=[target_site_resource],
sites=[target_sites],
mount_device_id=target_device_id
)
# 等待异步任务完成(轮询直到完成,再取结果)
if future:
try:
while not future.done():
time.sleep(0.1)
future.result()
self.hardware_interface._logger.info(
f"异步转移任务已完成: {material_name}"
)
except Exception as e:
raise ValueError(f"转移任务执行失败: {str(e)}")
self.hardware_interface._logger.info(
f"{idx}组转移成功: {material_name} -> "
f"{target_device_id}/{target_stack}/{target_sites}"
)
successful_count += 1
results.append({
"group_index": idx,
"success": True,
"material_name": material_name,
"target_stack": target_stack,
"target_site": target_sites,
"message": "转移成功"
})
except Exception as e:
error_msg = f"{idx}组转移失败: {str(e)}"
self.hardware_interface._logger.error(error_msg)
failed_count += 1
results.append({
"group_index": idx,
"success": False,
"material_name": group.get("materials", ""),
"error": str(e)
})
# 返回汇总结果
return {
"success": failed_count == 0,
"total_groups": len(transfer_groups),
"successful_groups": successful_count,
"failed_groups": failed_count,
"target_device_id": target_device_id,
"details": results,
"message": f"完成 {len(transfer_groups)} 组转移任务到 {target_device_id}: "
f"{successful_count} 成功, {failed_count} 失败"
}
except Exception as e:
error_msg = f"批量转移物料失败: {str(e)}"
self.hardware_interface._logger.error(error_msg)
return {
"success": False,
"total_groups": len(transfer_groups) if transfer_groups else 0,
"successful_groups": 0,
"failed_groups": len(transfer_groups) if transfer_groups else 0,
"target_device_id": target_device_id if target_device_id else "",
"error": error_msg
}
def query_resource_by_name(self, material_name: str):
"""
通过物料名称查询资源对象(适用于Bioyond系统)
Args:
material_name: 物料名称
Returns:
物料ID或None
"""
try:
# Bioyond系统使用material_cache存储物料信息
if not hasattr(self.hardware_interface, 'material_cache'):
self.hardware_interface._logger.error(
"hardware_interface没有material_cache属性"
)
return None
material_cache = self.hardware_interface.material_cache
self.hardware_interface._logger.info(
f"查询物料 '{material_name}', 缓存中共有 {len(material_cache)} 个物料"
)
# 调试: 打印前几个物料信息
if material_cache:
cache_items = list(material_cache.items())[:5]
for name, material_id in cache_items:
self.hardware_interface._logger.debug(
f"缓存物料: name={name}, id={material_id}"
)
# 直接从缓存中查找
if material_name in material_cache:
material_id = material_cache[material_name]
self.hardware_interface._logger.info(
f"找到物料: {material_name} -> ID: {material_id}"
)
return material_id
self.hardware_interface._logger.warning(
f"未找到物料: {material_name} (缓存中无此物料)"
)
# 打印所有可用物料名称供参考
available_materials = list(material_cache.keys())
if available_materials:
self.hardware_interface._logger.info(
f"可用物料列表(前10个): {available_materials[:10]}"
)
return None
except Exception as e:
self.hardware_interface._logger.error(
f"查询物料失败 {material_name}: {str(e)}"
)
return None
if __name__ == "__main__":
bioyond = BioyondDispensingStation(config={

View File

@@ -5,6 +5,7 @@ from typing import List, Dict, Any
from pathlib import Path
from datetime import datetime
from unilabos.devices.workstation.bioyond_studio.station import BioyondWorkstation
from unilabos.devices.workstation.bioyond_studio.bioyond_rpc import MachineState
from unilabos.ros.msgs.message_converter import convert_to_ros_msg, Float64, String
from unilabos.devices.workstation.bioyond_studio.config import (
WORKFLOW_STEP_IDS,
@@ -717,8 +718,7 @@ class BioyondReactionStation(BioyondWorkstation):
if oc in self.order_completion_status:
info = self.order_completion_status[oc]
try:
rq = json.dumps({"order_id": oid})
rep = self.hardware_interface.order_report(rq)
rep = self.hardware_interface.order_report(oid)
if not rep:
rep = {"error": "无法获取报告"}
reports.append({
@@ -912,6 +912,106 @@ class BioyondReactionStation(BioyondWorkstation):
"""
return self.hardware_interface.create_order(json_str)
def hard_delete_merged_workflows(self, workflow_ids: List[str]) -> Dict[str, Any]:
"""
调用新接口:硬删除合并后的工作流
Args:
workflow_ids: 要删除的工作流ID数组
Returns:
删除结果
"""
try:
if not isinstance(workflow_ids, list):
raise ValueError("workflow_ids必须是字符串数组")
return self._delete_project_api("/api/lims/order/workflows", workflow_ids)
except Exception as e:
print(f"❌ 硬删除异常: {str(e)}")
return {"code": 0, "message": str(e), "timestamp": int(time.time())}
# ==================== 项目接口通用方法 ====================
def _post_project_api(self, endpoint: str, data: Any) -> Dict[str, Any]:
"""项目接口通用POST调用
参数:
endpoint: 接口路径(例如 /api/lims/order/skip-titration-steps
data: 请求体中的 data 字段内容
返回:
dict: 服务端响应,失败时返回 {code:0,message,...}
"""
request_data = {
"apiKey": API_CONFIG["api_key"],
"requestTime": self.hardware_interface.get_current_time_iso8601(),
"data": data
}
print(f"\n📤 项目POST请求: {self.hardware_interface.host}{endpoint}")
print(json.dumps(request_data, indent=4, ensure_ascii=False))
try:
response = requests.post(
f"{self.hardware_interface.host}{endpoint}",
json=request_data,
headers={"Content-Type": "application/json"},
timeout=30
)
result = response.json()
if result.get("code") == 1:
print("✅ 请求成功")
else:
print(f"❌ 请求失败: {result.get('message','未知错误')}")
return result
except json.JSONDecodeError:
print("❌ 非JSON响应")
return {"code": 0, "message": "非JSON响应", "timestamp": int(time.time())}
except requests.exceptions.Timeout:
print("❌ 请求超时")
return {"code": 0, "message": "请求超时", "timestamp": int(time.time())}
except requests.exceptions.RequestException as e:
print(f"❌ 网络异常: {str(e)}")
return {"code": 0, "message": str(e), "timestamp": int(time.time())}
def _delete_project_api(self, endpoint: str, data: Any) -> Dict[str, Any]:
"""项目接口通用DELETE调用
参数:
endpoint: 接口路径(例如 /api/lims/order/workflows
data: 请求体中的 data 字段内容
返回:
dict: 服务端响应,失败时返回 {code:0,message,...}
"""
request_data = {
"apiKey": API_CONFIG["api_key"],
"requestTime": self.hardware_interface.get_current_time_iso8601(),
"data": data
}
print(f"\n📤 项目DELETE请求: {self.hardware_interface.host}{endpoint}")
print(json.dumps(request_data, indent=4, ensure_ascii=False))
try:
response = requests.delete(
f"{self.hardware_interface.host}{endpoint}",
json=request_data,
headers={"Content-Type": "application/json"},
timeout=30
)
result = response.json()
if result.get("code") == 1:
print("✅ 请求成功")
else:
print(f"❌ 请求失败: {result.get('message','未知错误')}")
return result
except json.JSONDecodeError:
print("❌ 非JSON响应")
return {"code": 0, "message": "非JSON响应", "timestamp": int(time.time())}
except requests.exceptions.Timeout:
print("❌ 请求超时")
return {"code": 0, "message": "请求超时", "timestamp": int(time.time())}
except requests.exceptions.RequestException as e:
print(f"❌ 网络异常: {str(e)}")
return {"code": 0, "message": str(e), "timestamp": int(time.time())}
# ==================== 工作流执行核心方法 ====================
def process_web_workflows(self, web_workflow_json: str) -> List[Dict[str, str]]:
@@ -942,76 +1042,6 @@ class BioyondReactionStation(BioyondWorkstation):
print(f"错误:处理工作流失败: {e}")
return []
def process_and_execute_workflow(self, workflow_name: str, task_name: str) -> dict:
"""
一站式处理工作流程:解析网页工作流列表,合并工作流(带参数),然后发布任务
Args:
workflow_name: 合并后的工作流名称
task_name: 任务名称
Returns:
任务创建结果
"""
web_workflow_list = self.get_workflow_sequence()
print(f"\n{'='*60}")
print(f"📋 处理网页工作流列表: {web_workflow_list}")
print(f"{'='*60}")
web_workflow_json = json.dumps({"web_workflow_list": web_workflow_list})
workflows_result = self.process_web_workflows(web_workflow_json)
if not workflows_result:
return self._create_error_result("处理网页工作流列表失败", "process_web_workflows")
print(f"workflows_result 类型: {type(workflows_result)}")
print(f"workflows_result 内容: {workflows_result}")
workflows_with_params = self._build_workflows_with_parameters(workflows_result)
merge_data = {
"name": workflow_name,
"workflows": workflows_with_params
}
# print(f"\n🔄 合并工作流(带参数),名称: {workflow_name}")
merged_workflow = self.merge_workflow_with_parameters(json.dumps(merge_data))
if not merged_workflow:
return self._create_error_result("合并工作流失败", "merge_workflow_with_parameters")
workflow_id = merged_workflow.get("subWorkflows", [{}])[0].get("id", "")
# print(f"\n📤 使用工作流创建任务: {workflow_name} (ID: {workflow_id})")
order_params = [{
"orderCode": f"task_{self.hardware_interface.get_current_time_iso8601()}",
"orderName": task_name,
"workFlowId": workflow_id,
"borderNumber": 1,
"paramValues": {}
}]
result = self.create_order(json.dumps(order_params))
if not result:
return self._create_error_result("创建任务失败", "create_order")
# 清空工作流序列和参数,防止下次执行时累积重复
self.pending_task_params = []
self.clear_workflows() # 清空工作流序列,避免重复累积
# print(f"\n✅ 任务创建成功: {result}")
# print(f"\n✅ 任务创建成功")
print(f"{'='*60}\n")
# 返回结果,包含合并后的工作流数据和订单参数
return json.dumps({
"success": True,
"result": result,
"merged_workflow": merged_workflow,
"order_params": order_params
})
def _build_workflows_with_parameters(self, workflows_result: list) -> list:
"""
构建带参数的工作流列表
@@ -1211,3 +1241,90 @@ class BioyondReactionStation(BioyondWorkstation):
print(f" ❌ 工作流ID验证失败: {e}")
print(f" 💡 将重新合并工作流")
return False
def process_and_execute_workflow(self, workflow_name: str, task_name: str) -> dict:
"""
一站式处理工作流程:解析网页工作流列表,合并工作流(带参数),然后发布任务
Args:
workflow_name: 合并后的工作流名称
task_name: 任务名称
Returns:
任务创建结果
"""
web_workflow_list = self.get_workflow_sequence()
print(f"\n{'='*60}")
print(f"📋 处理网页工作流列表: {web_workflow_list}")
print(f"{'='*60}")
web_workflow_json = json.dumps({"web_workflow_list": web_workflow_list})
workflows_result = self.process_web_workflows(web_workflow_json)
if not workflows_result:
return self._create_error_result("处理网页工作流列表失败", "process_web_workflows")
print(f"workflows_result 类型: {type(workflows_result)}")
print(f"workflows_result 内容: {workflows_result}")
workflows_with_params = self._build_workflows_with_parameters(workflows_result)
merge_data = {
"name": workflow_name,
"workflows": workflows_with_params
}
# print(f"\n🔄 合并工作流(带参数),名称: {workflow_name}")
merged_workflow = self.merge_workflow_with_parameters(json.dumps(merge_data))
if not merged_workflow:
return self._create_error_result("合并工作流失败", "merge_workflow_with_parameters")
workflow_id = merged_workflow.get("subWorkflows", [{}])[0].get("id", "")
# print(f"\n📤 使用工作流创建任务: {workflow_name} (ID: {workflow_id})")
order_params = [{
"orderCode": f"task_{self.hardware_interface.get_current_time_iso8601()}",
"orderName": task_name,
"workFlowId": workflow_id,
"borderNumber": 1,
"paramValues": {}
}]
result = self.create_order(json.dumps(order_params))
if not result:
return self._create_error_result("创建任务失败", "create_order")
# 清空工作流序列和参数,防止下次执行时累积重复
self.pending_task_params = []
self.clear_workflows() # 清空工作流序列,避免重复累积
# print(f"\n✅ 任务创建成功: {result}")
# print(f"\n✅ 任务创建成功")
print(f"{'='*60}\n")
# 返回结果,包含合并后的工作流数据和订单参数
return json.dumps({
"success": True,
"result": result,
"merged_workflow": merged_workflow,
"order_params": order_params
})
# ==================== 反应器操作接口 ====================
def skip_titration_steps(self, preintake_id: str) -> Dict[str, Any]:
"""跳过当前正在进行的滴定步骤
Args:
preintake_id: 通量ID
Returns:
Dict[str, Any]: 服务器响应,包含状态码、消息和时间戳
"""
try:
return self._post_project_api("/api/lims/order/skip-titration-steps", preintake_id)
except Exception as e:
print(f"❌ 跳过滴定异常: {str(e)}")
return {"code": 0, "message": str(e), "timestamp": int(time.time())}