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添加了固体加样器,丰富了json,修改了add protocol
This commit is contained in:
@@ -70,7 +70,7 @@ class SeparateProtocol(BaseModel):
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repeats: int <Separate product_phase="bottom" purpose="extract" repeats="3" solvent="CH2Cl2" vessel="separator" volume="?"/>
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repeats: int <Separate product_phase="bottom" purpose="extract" repeats="3" solvent="CH2Cl2" vessel="separator" volume="?"/>
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stir_time: float<Separate product_phase="top" product_vessel="flask" purpose="separate" vessel="separator" waste_vessel="separator"/>
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stir_time: float<Separate product_phase="top" product_vessel="flask" purpose="separate" vessel="separator" waste_vessel="separator"/>
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stir_speed: float
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stir_speed: float
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settling_time: float
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settling_time: float 写了action
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class EvaporateProtocol(BaseModel):
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class EvaporateProtocol(BaseModel):
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@@ -102,7 +102,7 @@ class AddProtocol(BaseModel):
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vessel="main_reactor" volume="2.67 mL"/>
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vessel="main_reactor" volume="2.67 mL"/>
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<Add ratio="?" reagent="tetrahydrofuran|tert-butanol" vessel="main_reactor" volume="?"/>
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<Add ratio="?" reagent="tetrahydrofuran|tert-butanol" vessel="main_reactor" volume="?"/>
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viscous: bool
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viscous: bool
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purpose: str
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purpose: str 写了action
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class CentrifugeProtocol(BaseModel):
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class CentrifugeProtocol(BaseModel):
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vessel: str
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vessel: str
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@@ -127,7 +127,7 @@ class HeatChillProtocol(BaseModel):
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<HeatChill temp="256 °C" time="?" vessel="main_reactor"/>
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<HeatChill temp="256 °C" time="?" vessel="main_reactor"/>
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<HeatChill reflux_solvent="methanol" temp_spec="reflux" time="2 h" vessel="main_reactor"/>
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<HeatChill reflux_solvent="methanol" temp_spec="reflux" time="2 h" vessel="main_reactor"/>
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<HeatChillToTemp temp_spec="room temperature" vessel="main_reactor"/>
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<HeatChillToTemp temp_spec="room temperature" vessel="main_reactor"/>
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stir: bool
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stir: bool 处理了
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stir_speed: float
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stir_speed: float
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purpose: str
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purpose: str
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@@ -180,7 +180,7 @@ class DissolveProtocol(BaseModel):
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amount: str = "" <Dissolve mass="12.9 g" reagent="4-tert-butylbenzyl bromide" vessel="main_reactor"/>
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amount: str = "" <Dissolve mass="12.9 g" reagent="4-tert-butylbenzyl bromide" vessel="main_reactor"/>
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temp: float = 25.0 <Dissolve solvent="diisopropyl ether" vessel="rotavap" volume="?"/>
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temp: float = 25.0 <Dissolve solvent="diisopropyl ether" vessel="rotavap" volume="?"/>
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time: float = 0.0
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time: float = 0.0
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stir_speed: float = 0.0
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stir_speed: float = 0.0 写了action
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class FilterThroughProtocol(BaseModel):
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class FilterThroughProtocol(BaseModel):
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from_vessel: str
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from_vessel: str
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@@ -194,7 +194,7 @@ class FilterThroughProtocol(BaseModel):
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class RunColumnProtocol(BaseModel):
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class RunColumnProtocol(BaseModel):
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from_vessel: str
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from_vessel: str
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to_vessel: str <RunColumn Rf="?" column="column" from_vessel="rotavap" pct1="40 %" pct2="50 %" solvent1="ethyl acetate" solvent2="hexane" to_vessel="rotavap"/>
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to_vessel: str <RunColumn Rf="?" column="column" from_vessel="rotavap" pct1="40 %" pct2="50 %" solvent1="ethyl acetate" solvent2="hexane" to_vessel="rotavap"/>
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column: str
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column: str 写了action
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class WashSolidProtocol(BaseModel):
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class WashSolidProtocol(BaseModel):
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vessel: str
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vessel: str
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@@ -32,7 +32,11 @@
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"separator_1",
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"separator_1",
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"collection_bottle_1",
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"collection_bottle_1",
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"collection_bottle_2",
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"collection_bottle_2",
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"collection_bottle_3"
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"collection_bottle_3",
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"solid_dispenser_1",
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"solid_reagent_bottle_1",
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"solid_reagent_bottle_2",
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"solid_reagent_bottle_3"
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],
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],
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"parent": null,
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"parent": null,
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"type": "device",
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"type": "device",
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@@ -672,6 +676,98 @@
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"data": {
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"data": {
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"current_volume": 0.0
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"current_volume": 0.0
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}
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}
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},
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{
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"id": "solid_dispenser_1",
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"name": "固体粉末加样器",
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"children": [],
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"parent": "OrganicSynthesisStation",
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"type": "device",
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"class": "virtual_solid_dispenser",
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"position": {
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"x": 600,
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"y": 300,
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"z": 0
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},
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"config": {
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"max_capacity": 100.0,
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"precision": 0.001
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},
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"data": {
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"status": "Ready",
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"current_reagent": "",
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"dispensed_amount": 0.0,
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"total_operations": 0
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}
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},
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{
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"id": "solid_reagent_bottle_1",
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"name": "固体试剂瓶1-氯化钠",
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"children": [],
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"parent": "OrganicSynthesisStation",
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"type": "container",
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"class": "container",
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"position": {
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"x": 550,
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"y": 250,
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"z": 0
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},
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"config": {
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"volume": 500.0,
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"reagent": "sodium_chloride",
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"physical_state": "solid"
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},
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"data": {
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"current_mass": 500.0,
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"reagent_name": "sodium_chloride",
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"physical_state": "solid"
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}
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},
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{
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"id": "solid_reagent_bottle_2",
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"name": "固体试剂瓶2-碳酸钠",
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"children": [],
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"parent": "OrganicSynthesisStation",
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"type": "container",
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"class": "container",
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"position": {
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"x": 600,
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"y": 250,
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"z": 0
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},
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"config": {
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"volume": 500.0,
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"reagent": "sodium_carbonate",
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"physical_state": "solid"
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},
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"data": {
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"current_mass": 500.0,
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"reagent_name": "sodium_carbonate",
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"physical_state": "solid"
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}
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},
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{
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"id": "solid_reagent_bottle_3",
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"name": "固体试剂瓶3-氯化镁",
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"children": [],
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"parent": "OrganicSynthesisStation",
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"type": "container",
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"class": "container",
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"position": {
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"x": 650,
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"y": 250,
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"z": 0
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},
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"config": {
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"volume": 500.0,
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"reagent": "magnesium_chloride",
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"physical_state": "solid"
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},
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"data": {
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"current_mass": 500.0,
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"reagent_name": "magnesium_chloride",
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"physical_state": "solid"
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}
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}
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}
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],
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],
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"links": [
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"links": [
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@@ -964,6 +1060,46 @@
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"solenoid_valve_3": "out",
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"solenoid_valve_3": "out",
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"main_reactor": "top"
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"main_reactor": "top"
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}
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}
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},
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{
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"id": "link_solid_dispenser_to_reactor",
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"source": "solid_dispenser_1",
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"target": "main_reactor",
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"type": "resource",
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"port": {
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"solid_dispenser_1": "SolidOut",
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"main_reactor": "top"
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}
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},
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{
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"id": "link_solid_bottle1_to_dispenser",
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"source": "solid_reagent_bottle_1",
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"target": "solid_dispenser_1",
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"type": "resource",
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"port": {
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"solid_reagent_bottle_1": "top",
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"solid_dispenser_1": "SolidIn"
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}
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},
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{
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"id": "link_solid_bottle2_to_dispenser",
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"source": "solid_reagent_bottle_2",
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"target": "solid_dispenser_1",
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"type": "resource",
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"port": {
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"solid_reagent_bottle_2": "top",
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"solid_dispenser_1": "SolidIn"
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}
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},
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{
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"id": "link_solid_bottle3_to_dispenser",
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"source": "solid_reagent_bottle_3",
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"target": "solid_dispenser_1",
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"type": "resource",
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"port": {
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"solid_reagent_bottle_3": "top",
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"solid_dispenser_1": "SolidIn"
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}
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}
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}
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]
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]
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}
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}
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@@ -4,389 +4,92 @@ from .pump_protocol import generate_pump_protocol_with_rinsing
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def find_reagent_vessel(G: nx.DiGraph, reagent: str) -> str:
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def find_reagent_vessel(G: nx.DiGraph, reagent: str) -> str:
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"""
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"""增强版试剂容器查找,支持固体和液体"""
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根据试剂名称查找对应的试剂瓶,支持多种匹配模式:
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print(f"ADD_PROTOCOL: 查找试剂 '{reagent}' 的容器...")
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1. 容器名称匹配(如 flask_DMF, reagent_bottle_1-DMF)
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2. 容器内液体类型匹配(如 liquid_type: "DMF", name: "ethanol")
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3. 试剂名称匹配(如 reagent_name: "DMF", config.reagent: "ethyl_acetate")
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Args:
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# 1. 直接名称匹配
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G: 网络图
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reagent: 试剂名称
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Returns:
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str: 试剂瓶的vessel ID
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Raises:
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ValueError: 如果找不到对应的试剂瓶
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"""
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print(f"ADD_PROTOCOL: 正在查找试剂 '{reagent}' 的容器...")
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# 第一步:通过容器名称匹配
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possible_names = [
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possible_names = [
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f"flask_{reagent}", # flask_DMF, flask_ethanol
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reagent,
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f"bottle_{reagent}", # bottle_DMF, bottle_ethanol
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f"flask_{reagent}",
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f"vessel_{reagent}", # vessel_DMF, vessel_ethanol
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f"bottle_{reagent}",
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f"{reagent}_flask", # DMF_flask, ethanol_flask
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f"vessel_{reagent}",
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f"{reagent}_bottle", # DMF_bottle, ethanol_bottle
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f"{reagent}_flask",
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f"{reagent}", # 直接用试剂名
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f"{reagent}_bottle",
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f"reagent_{reagent}", # reagent_DMF, reagent_ethanol
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f"reagent_{reagent}",
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f"reagent_bottle_{reagent}", # reagent_bottle_DMF
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f"reagent_bottle_{reagent}",
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f"solid_reagent_bottle_{reagent}", # 🔧 添加固体试剂瓶匹配
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]
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]
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# 尝试名称匹配
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for name in possible_names:
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for vessel_name in possible_names:
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if name in G.nodes():
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if vessel_name in G.nodes():
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print(f"ADD_PROTOCOL: 找到容器: {name}")
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print(f"ADD_PROTOCOL: 通过名称匹配找到容器: {vessel_name}")
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return name
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return vessel_name
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# 第二步:通过模糊名称匹配(名称中包含试剂名)
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# 2. 模糊匹配 - 检查容器数据
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for node_id in G.nodes():
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for node_id in G.nodes():
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if G.nodes[node_id].get('type') == 'container':
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node_data = G.nodes[node_id]
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# 检查节点ID或名称中是否包含试剂名
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if node_data.get('type') == 'container':
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node_name = G.nodes[node_id].get('name', '').lower()
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# 检查配置中的试剂名称
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if (reagent.lower() in node_id.lower() or
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config_reagent = node_data.get('config', {}).get('reagent', '')
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reagent.lower() in node_name):
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data_reagent = node_data.get('data', {}).get('reagent_name', '')
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print(f"ADD_PROTOCOL: 通过模糊名称匹配找到容器: {node_id} (名称: {node_name})")
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# 名称匹配
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if (config_reagent.lower() == reagent.lower() or
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data_reagent.lower() == reagent.lower() or
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reagent.lower() in node_id.lower()):
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print(f"ADD_PROTOCOL: 模糊匹配到容器: {node_id}")
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return node_id
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return node_id
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# 第三步:通过液体类型匹配
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# 液体类型匹配(保持原有逻辑)
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for node_id in G.nodes():
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vessel_data = node_data.get('data', {})
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if G.nodes[node_id].get('type') == 'container':
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vessel_data = G.nodes[node_id].get('data', {})
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liquids = vessel_data.get('liquid', [])
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liquids = vessel_data.get('liquid', [])
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for liquid in liquids:
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if isinstance(liquid, dict):
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# 支持两种格式的液体类型字段
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liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
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reagent_name = vessel_data.get('reagent_name', '')
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config_reagent = G.nodes[node_id].get('config', {}).get('reagent', '')
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# 检查多个可能的字段
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if (liquid_type.lower() == reagent.lower() or
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reagent_name.lower() == reagent.lower() or
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config_reagent.lower() == reagent.lower()):
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print(f"ADD_PROTOCOL: 通过液体类型匹配找到容器: {node_id}")
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print(f" - liquid_type: {liquid_type}")
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print(f" - reagent_name: {reagent_name}")
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print(f" - config.reagent: {config_reagent}")
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return node_id
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# 第四步:列出所有可用的容器信息帮助调试
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available_containers = []
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for node_id in G.nodes():
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if G.nodes[node_id].get('type') == 'container':
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vessel_data = G.nodes[node_id].get('data', {})
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config_data = G.nodes[node_id].get('config', {})
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liquids = vessel_data.get('liquid', [])
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container_info = {
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'id': node_id,
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'name': G.nodes[node_id].get('name', ''),
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'liquid_types': [],
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'reagent_name': vessel_data.get('reagent_name', ''),
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'config_reagent': config_data.get('reagent', '')
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}
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for liquid in liquids:
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if isinstance(liquid, dict):
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liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
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if liquid_type:
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container_info['liquid_types'].append(liquid_type)
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available_containers.append(container_info)
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print(f"ADD_PROTOCOL: 可用容器列表:")
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for container in available_containers:
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print(f" - {container['id']}: {container['name']}")
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print(f" 液体类型: {container['liquid_types']}")
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print(f" 试剂名称: {container['reagent_name']}")
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print(f" 配置试剂: {container['config_reagent']}")
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|
||||||
raise ValueError(f"找不到试剂 '{reagent}' 对应的试剂瓶。尝试了名称匹配: {possible_names}")
|
|
||||||
|
|
||||||
|
|
||||||
def find_reagent_vessel_by_any_match(G: nx.DiGraph, reagent: str) -> str:
|
|
||||||
"""
|
|
||||||
增强版试剂容器查找,支持各种匹配方式的别名函数
|
|
||||||
"""
|
|
||||||
return find_reagent_vessel(G, reagent)
|
|
||||||
|
|
||||||
|
|
||||||
def get_vessel_reagent_volume(G: nx.DiGraph, vessel: str) -> float:
|
|
||||||
"""获取容器中的试剂体积"""
|
|
||||||
if vessel not in G.nodes():
|
|
||||||
return 0.0
|
|
||||||
|
|
||||||
vessel_data = G.nodes[vessel].get('data', {})
|
|
||||||
liquids = vessel_data.get('liquid', [])
|
|
||||||
|
|
||||||
total_volume = 0.0
|
|
||||||
for liquid in liquids:
|
|
||||||
if isinstance(liquid, dict):
|
|
||||||
# 支持两种格式:新格式 (name, volume) 和旧格式 (liquid_type, liquid_volume)
|
|
||||||
volume = liquid.get('volume') or liquid.get('liquid_volume', 0.0)
|
|
||||||
total_volume += volume
|
|
||||||
|
|
||||||
return total_volume
|
|
||||||
|
|
||||||
|
|
||||||
def get_vessel_reagent_types(G: nx.DiGraph, vessel: str) -> List[str]:
|
|
||||||
"""获取容器中所有试剂的类型"""
|
|
||||||
if vessel not in G.nodes():
|
|
||||||
return []
|
|
||||||
|
|
||||||
vessel_data = G.nodes[vessel].get('data', {})
|
|
||||||
liquids = vessel_data.get('liquid', [])
|
|
||||||
|
|
||||||
reagent_types = []
|
|
||||||
for liquid in liquids:
|
|
||||||
if isinstance(liquid, dict):
|
|
||||||
# 支持两种格式的试剂类型字段
|
|
||||||
reagent_type = liquid.get('liquid_type') or liquid.get('name', '')
|
|
||||||
if reagent_type:
|
|
||||||
reagent_types.append(reagent_type)
|
|
||||||
|
|
||||||
# 同时检查配置中的试剂信息
|
|
||||||
config_reagent = G.nodes[vessel].get('config', {}).get('reagent', '')
|
|
||||||
reagent_name = vessel_data.get('reagent_name', '')
|
|
||||||
|
|
||||||
if config_reagent and config_reagent not in reagent_types:
|
|
||||||
reagent_types.append(config_reagent)
|
|
||||||
if reagent_name and reagent_name not in reagent_types:
|
|
||||||
reagent_types.append(reagent_name)
|
|
||||||
|
|
||||||
return reagent_types
|
|
||||||
|
|
||||||
|
|
||||||
def find_vessels_by_reagent(G: nx.DiGraph, reagent: str) -> List[str]:
|
|
||||||
"""
|
|
||||||
根据试剂类型查找所有匹配的容器
|
|
||||||
返回匹配容器的ID列表
|
|
||||||
"""
|
|
||||||
matching_vessels = []
|
|
||||||
|
|
||||||
for node_id in G.nodes():
|
|
||||||
if G.nodes[node_id].get('type') == 'container':
|
|
||||||
# 检查容器名称匹配
|
|
||||||
node_name = G.nodes[node_id].get('name', '').lower()
|
|
||||||
if reagent.lower() in node_id.lower() or reagent.lower() in node_name:
|
|
||||||
matching_vessels.append(node_id)
|
|
||||||
continue
|
|
||||||
|
|
||||||
# 检查试剂类型匹配
|
|
||||||
vessel_data = G.nodes[node_id].get('data', {})
|
|
||||||
liquids = vessel_data.get('liquid', [])
|
|
||||||
config_data = G.nodes[node_id].get('config', {})
|
|
||||||
|
|
||||||
# 检查 reagent_name 和 config.reagent
|
|
||||||
reagent_name = vessel_data.get('reagent_name', '').lower()
|
|
||||||
config_reagent = config_data.get('reagent', '').lower()
|
|
||||||
|
|
||||||
if (reagent.lower() == reagent_name or
|
|
||||||
reagent.lower() == config_reagent):
|
|
||||||
matching_vessels.append(node_id)
|
|
||||||
continue
|
|
||||||
|
|
||||||
# 检查液体列表
|
|
||||||
for liquid in liquids:
|
for liquid in liquids:
|
||||||
if isinstance(liquid, dict):
|
if isinstance(liquid, dict):
|
||||||
liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
|
liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
|
||||||
if liquid_type.lower() == reagent.lower():
|
if liquid_type.lower() == reagent.lower():
|
||||||
matching_vessels.append(node_id)
|
print(f"ADD_PROTOCOL: 液体类型匹配到容器: {node_id}")
|
||||||
break
|
return node_id
|
||||||
|
|
||||||
return matching_vessels
|
raise ValueError(f"找不到试剂 '{reagent}' 对应的容器")
|
||||||
|
|
||||||
|
|
||||||
def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
|
def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
|
||||||
"""
|
"""查找连接到指定容器的搅拌器"""
|
||||||
查找与指定容器相连的搅拌器
|
stirrer_nodes = []
|
||||||
|
for node in G.nodes():
|
||||||
|
node_class = G.nodes[node].get('class', '').lower()
|
||||||
|
if 'stirrer' in node_class:
|
||||||
|
stirrer_nodes.append(node)
|
||||||
|
|
||||||
Args:
|
# 查找连接到容器的搅拌器
|
||||||
G: 网络图
|
|
||||||
vessel: 容器ID
|
|
||||||
|
|
||||||
Returns:
|
|
||||||
str: 搅拌器ID,如果找不到则返回None
|
|
||||||
"""
|
|
||||||
# 查找所有搅拌器节点
|
|
||||||
stirrer_nodes = [node for node in G.nodes()
|
|
||||||
if (G.nodes[node].get('class') or '') == 'virtual_stirrer']
|
|
||||||
|
|
||||||
# 检查哪个搅拌器与目标容器相连
|
|
||||||
for stirrer in stirrer_nodes:
|
for stirrer in stirrer_nodes:
|
||||||
if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
|
if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
|
||||||
|
print(f"ADD_PROTOCOL: 找到连接的搅拌器: {stirrer}")
|
||||||
return stirrer
|
return stirrer
|
||||||
|
|
||||||
# 如果没有直接连接,返回第一个可用的搅拌器
|
# 返回第一个搅拌器
|
||||||
return stirrer_nodes[0] if stirrer_nodes else None
|
if stirrer_nodes:
|
||||||
|
print(f"ADD_PROTOCOL: 使用第一个搅拌器: {stirrer_nodes[0]}")
|
||||||
|
return stirrer_nodes[0]
|
||||||
|
|
||||||
|
return None
|
||||||
|
|
||||||
|
|
||||||
|
def find_solid_dispenser(G: nx.DiGraph) -> str:
|
||||||
|
"""查找固体加样器"""
|
||||||
|
for node in G.nodes():
|
||||||
|
node_class = G.nodes[node].get('class', '').lower()
|
||||||
|
if 'solid_dispenser' in node_class:
|
||||||
|
print(f"ADD_PROTOCOL: 找到固体加样器: {node}")
|
||||||
|
return node
|
||||||
|
return None
|
||||||
|
|
||||||
|
|
||||||
def generate_add_protocol(
|
def generate_add_protocol(
|
||||||
G: nx.DiGraph,
|
G: nx.DiGraph,
|
||||||
vessel: str,
|
vessel: str,
|
||||||
reagent: str,
|
reagent: str,
|
||||||
volume: float,
|
volume: float = 0.0,
|
||||||
mass: float = 0.0,
|
|
||||||
amount: str = "",
|
|
||||||
time: float = 0.0,
|
|
||||||
stir: bool = False,
|
|
||||||
stir_speed: float = 300.0,
|
|
||||||
viscous: bool = False,
|
|
||||||
purpose: str = "添加试剂"
|
|
||||||
) -> List[Dict[str, Any]]:
|
|
||||||
"""
|
|
||||||
生成添加试剂的协议序列,支持智能试剂匹配
|
|
||||||
|
|
||||||
基于pump_protocol的成熟算法,实现试剂添加功能:
|
|
||||||
1. 智能查找试剂瓶(支持名称匹配、液体类型匹配、试剂配置匹配)
|
|
||||||
2. **先启动搅拌,再进行转移** - 确保试剂添加更均匀
|
|
||||||
3. 使用pump_protocol实现液体转移
|
|
||||||
|
|
||||||
Args:
|
|
||||||
G: 有向图,节点为容器和设备,边为连接关系
|
|
||||||
vessel: 目标容器(要添加试剂的容器)
|
|
||||||
reagent: 试剂名称(用于查找对应的试剂瓶)
|
|
||||||
volume: 要添加的体积 (mL)
|
|
||||||
mass: 要添加的质量 (g) - 暂时未使用,预留接口
|
|
||||||
amount: 其他数量描述
|
|
||||||
time: 添加时间 (s),如果指定则计算流速
|
|
||||||
stir: 是否启用搅拌
|
|
||||||
stir_speed: 搅拌速度 (RPM)
|
|
||||||
viscous: 是否为粘稠液体
|
|
||||||
purpose: 添加目的描述
|
|
||||||
|
|
||||||
Returns:
|
|
||||||
List[Dict[str, Any]]: 动作序列
|
|
||||||
|
|
||||||
Raises:
|
|
||||||
ValueError: 当找不到必要的设备或容器时
|
|
||||||
"""
|
|
||||||
action_sequence = []
|
|
||||||
|
|
||||||
print(f"ADD_PROTOCOL: 开始生成添加试剂协议")
|
|
||||||
print(f" - 目标容器: {vessel}")
|
|
||||||
print(f" - 试剂: {reagent}")
|
|
||||||
print(f" - 体积: {volume} mL")
|
|
||||||
print(f" - 质量: {mass} g")
|
|
||||||
print(f" - 搅拌: {stir} (速度: {stir_speed} RPM)")
|
|
||||||
print(f" - 粘稠: {viscous}")
|
|
||||||
print(f" - 目的: {purpose}")
|
|
||||||
|
|
||||||
# 1. 验证目标容器存在
|
|
||||||
if vessel not in G.nodes():
|
|
||||||
raise ValueError(f"目标容器 '{vessel}' 不存在于系统中")
|
|
||||||
|
|
||||||
# 2. 智能查找试剂瓶
|
|
||||||
try:
|
|
||||||
reagent_vessel = find_reagent_vessel(G, reagent)
|
|
||||||
print(f"ADD_PROTOCOL: 找到试剂容器: {reagent_vessel}")
|
|
||||||
except ValueError as e:
|
|
||||||
raise ValueError(f"无法找到试剂 '{reagent}': {str(e)}")
|
|
||||||
|
|
||||||
# 3. 验证试剂容器中的试剂体积
|
|
||||||
available_volume = get_vessel_reagent_volume(G, reagent_vessel)
|
|
||||||
print(f"ADD_PROTOCOL: 试剂容器 {reagent_vessel} 中有 {available_volume} mL 试剂")
|
|
||||||
|
|
||||||
if available_volume < volume:
|
|
||||||
print(f"ADD_PROTOCOL: 警告 - 试剂容器中的试剂不足!需要 {volume} mL,可用 {available_volume} mL")
|
|
||||||
|
|
||||||
# 4. 验证是否存在从试剂瓶到目标容器的路径
|
|
||||||
try:
|
|
||||||
path = nx.shortest_path(G, source=reagent_vessel, target=vessel)
|
|
||||||
print(f"ADD_PROTOCOL: 找到路径 {reagent_vessel} -> {vessel}: {path}")
|
|
||||||
except nx.NetworkXNoPath:
|
|
||||||
raise ValueError(f"从试剂瓶 '{reagent_vessel}' 到目标容器 '{vessel}' 没有可用路径")
|
|
||||||
|
|
||||||
# 5. **先启动搅拌** - 关键改进!
|
|
||||||
if stir:
|
|
||||||
try:
|
|
||||||
stirrer_id = find_connected_stirrer(G, vessel)
|
|
||||||
|
|
||||||
if stirrer_id:
|
|
||||||
print(f"ADD_PROTOCOL: 找到搅拌器 {stirrer_id},将在添加前启动搅拌")
|
|
||||||
|
|
||||||
# 先启动搅拌
|
|
||||||
stir_action = {
|
|
||||||
"device_id": stirrer_id,
|
|
||||||
"action_name": "start_stir",
|
|
||||||
"action_kwargs": {
|
|
||||||
"vessel": vessel,
|
|
||||||
"stir_speed": stir_speed,
|
|
||||||
"purpose": f"{purpose}: 启动搅拌,准备添加 {reagent}"
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
action_sequence.append(stir_action)
|
|
||||||
print(f"ADD_PROTOCOL: 已添加搅拌动作,速度 {stir_speed} RPM")
|
|
||||||
|
|
||||||
# 等待搅拌稳定
|
|
||||||
action_sequence.append({
|
|
||||||
"action_name": "wait",
|
|
||||||
"action_kwargs": {"time": 5}
|
|
||||||
})
|
|
||||||
else:
|
|
||||||
print(f"ADD_PROTOCOL: 警告 - 需要搅拌但未找到与容器 {vessel} 相连的搅拌器")
|
|
||||||
|
|
||||||
except Exception as e:
|
|
||||||
print(f"ADD_PROTOCOL: 搅拌器配置出错: {str(e)}")
|
|
||||||
|
|
||||||
# 6. 如果指定了体积,执行液体转移
|
|
||||||
if volume > 0:
|
|
||||||
# 6.1 计算流速参数
|
|
||||||
if time > 0:
|
|
||||||
# 根据时间计算流速
|
|
||||||
transfer_flowrate = volume / time
|
|
||||||
flowrate = transfer_flowrate
|
|
||||||
else:
|
|
||||||
# 使用默认流速
|
|
||||||
if viscous:
|
|
||||||
transfer_flowrate = 0.3 # 粘稠液体用较慢速度
|
|
||||||
flowrate = 1.0
|
|
||||||
else:
|
|
||||||
transfer_flowrate = 0.5 # 普通液体默认速度
|
|
||||||
flowrate = 2.5
|
|
||||||
|
|
||||||
print(f"ADD_PROTOCOL: 准备转移 {volume} mL 从 {reagent_vessel} 到 {vessel}")
|
|
||||||
print(f"ADD_PROTOCOL: 转移流速={transfer_flowrate} mL/s, 注入流速={flowrate} mL/s")
|
|
||||||
|
|
||||||
# 6.2 使用pump_protocol的核心算法实现液体转移
|
|
||||||
try:
|
|
||||||
pump_actions = generate_pump_protocol_with_rinsing(
|
|
||||||
G=G,
|
|
||||||
from_vessel=reagent_vessel,
|
|
||||||
to_vessel=vessel,
|
|
||||||
volume=volume,
|
|
||||||
amount=amount,
|
|
||||||
time=time,
|
|
||||||
viscous=viscous,
|
|
||||||
rinsing_solvent="", # 添加试剂通常不需要清洗
|
|
||||||
rinsing_volume=0.0,
|
|
||||||
rinsing_repeats=0,
|
|
||||||
solid=False,
|
|
||||||
flowrate=flowrate,
|
|
||||||
transfer_flowrate=transfer_flowrate
|
|
||||||
)
|
|
||||||
|
|
||||||
# 添加pump actions到序列中
|
|
||||||
action_sequence.extend(pump_actions)
|
|
||||||
|
|
||||||
except Exception as e:
|
|
||||||
raise ValueError(f"生成泵协议时出错: {str(e)}")
|
|
||||||
|
|
||||||
print(f"ADD_PROTOCOL: 生成了 {len(action_sequence)} 个动作")
|
|
||||||
print(f"ADD_PROTOCOL: 添加试剂协议生成完成")
|
|
||||||
|
|
||||||
return action_sequence
|
|
||||||
|
|
||||||
|
|
||||||
def generate_add_protocol_with_cleaning(
|
|
||||||
G: nx.DiGraph,
|
|
||||||
vessel: str,
|
|
||||||
reagent: str,
|
|
||||||
volume: float,
|
|
||||||
mass: float = 0.0,
|
mass: float = 0.0,
|
||||||
amount: str = "",
|
amount: str = "",
|
||||||
time: float = 0.0,
|
time: float = 0.0,
|
||||||
@@ -394,233 +97,239 @@ def generate_add_protocol_with_cleaning(
|
|||||||
stir_speed: float = 300.0,
|
stir_speed: float = 300.0,
|
||||||
viscous: bool = False,
|
viscous: bool = False,
|
||||||
purpose: str = "添加试剂",
|
purpose: str = "添加试剂",
|
||||||
cleaning_solvent: str = "air",
|
# 新增XDL参数
|
||||||
cleaning_volume: float = 5.0,
|
mol: str = "",
|
||||||
cleaning_repeats: int = 1
|
event: str = "",
|
||||||
|
rate_spec: str = "",
|
||||||
|
equiv: str = "",
|
||||||
|
ratio: str = "",
|
||||||
|
**kwargs
|
||||||
) -> List[Dict[str, Any]]:
|
) -> List[Dict[str, Any]]:
|
||||||
"""
|
"""
|
||||||
生成带清洗的添加试剂协议,支持智能试剂匹配
|
生成添加试剂协议
|
||||||
|
|
||||||
与普通添加协议的区别是会在添加后进行管道清洗
|
智能判断:
|
||||||
|
- 有 mass 或 mol → 固体加样器
|
||||||
Args:
|
- 有 volume → 液体转移
|
||||||
G: 有向图
|
- 都没有 → 默认液体 1mL
|
||||||
vessel: 目标容器
|
|
||||||
reagent: 试剂名称
|
|
||||||
volume: 添加体积
|
|
||||||
mass: 添加质量(预留)
|
|
||||||
amount: 其他数量描述
|
|
||||||
time: 添加时间
|
|
||||||
stir: 是否搅拌
|
|
||||||
stir_speed: 搅拌速度
|
|
||||||
viscous: 是否粘稠
|
|
||||||
purpose: 添加目的
|
|
||||||
cleaning_solvent: 清洗溶剂("air"表示空气清洗)
|
|
||||||
cleaning_volume: 清洗体积
|
|
||||||
cleaning_repeats: 清洗重复次数
|
|
||||||
|
|
||||||
Returns:
|
|
||||||
List[Dict[str, Any]]: 动作序列
|
|
||||||
"""
|
"""
|
||||||
|
|
||||||
|
print(f"ADD_PROTOCOL: 添加 {reagent} 到 {vessel}")
|
||||||
|
print(f" - 体积: {volume} mL, 质量: {mass} g, 摩尔: {mol}")
|
||||||
|
print(f" - 时间: {time} s, 事件: {event}, 速率: {rate_spec}")
|
||||||
|
|
||||||
|
# 1. 验证容器
|
||||||
|
if vessel not in G.nodes():
|
||||||
|
raise ValueError(f"容器 '{vessel}' 不存在")
|
||||||
|
|
||||||
|
# 2. 判断固体 vs 液体
|
||||||
|
is_solid = (mass > 0 or mol.strip() != "")
|
||||||
|
|
||||||
action_sequence = []
|
action_sequence = []
|
||||||
|
|
||||||
# 1. 智能查找试剂瓶
|
if is_solid:
|
||||||
reagent_vessel = find_reagent_vessel(G, reagent)
|
# === 固体加样路径 ===
|
||||||
|
print(f"ADD_PROTOCOL: 使用固体加样器")
|
||||||
|
|
||||||
# 2. **先启动搅拌**
|
solid_dispenser = find_solid_dispenser(G)
|
||||||
if stir:
|
if not solid_dispenser:
|
||||||
stirrer_id = find_connected_stirrer(G, vessel)
|
raise ValueError("未找到固体加样器")
|
||||||
if stirrer_id:
|
|
||||||
action_sequence.append({
|
|
||||||
"device_id": stirrer_id,
|
|
||||||
"action_name": "start_stir",
|
|
||||||
"action_kwargs": {
|
|
||||||
"vessel": vessel,
|
|
||||||
"stir_speed": stir_speed,
|
|
||||||
"purpose": f"{purpose}: 启动搅拌,准备添加 {reagent}"
|
|
||||||
}
|
|
||||||
})
|
|
||||||
|
|
||||||
# 等待搅拌稳定
|
# 启动搅拌(如果需要)
|
||||||
action_sequence.append({
|
if stir:
|
||||||
"action_name": "wait",
|
stirrer_id = find_connected_stirrer(G, vessel)
|
||||||
"action_kwargs": {"time": 5}
|
if stirrer_id:
|
||||||
})
|
action_sequence.append({
|
||||||
|
|
||||||
# 3. 计算流速
|
|
||||||
if time > 0:
|
|
||||||
transfer_flowrate = volume / time
|
|
||||||
flowrate = transfer_flowrate
|
|
||||||
else:
|
|
||||||
if viscous:
|
|
||||||
transfer_flowrate = 0.3
|
|
||||||
flowrate = 1.0
|
|
||||||
else:
|
|
||||||
transfer_flowrate = 0.5
|
|
||||||
flowrate = 2.5
|
|
||||||
|
|
||||||
# 4. 使用带清洗的pump_protocol
|
|
||||||
pump_actions = generate_pump_protocol_with_rinsing(
|
|
||||||
G=G,
|
|
||||||
from_vessel=reagent_vessel,
|
|
||||||
to_vessel=vessel,
|
|
||||||
volume=volume,
|
|
||||||
amount=amount,
|
|
||||||
time=time,
|
|
||||||
viscous=viscous,
|
|
||||||
rinsing_solvent=cleaning_solvent,
|
|
||||||
rinsing_volume=cleaning_volume,
|
|
||||||
rinsing_repeats=cleaning_repeats,
|
|
||||||
solid=False,
|
|
||||||
flowrate=flowrate,
|
|
||||||
transfer_flowrate=transfer_flowrate
|
|
||||||
)
|
|
||||||
|
|
||||||
action_sequence.extend(pump_actions)
|
|
||||||
|
|
||||||
return action_sequence
|
|
||||||
|
|
||||||
|
|
||||||
def generate_sequential_add_protocol(
|
|
||||||
G: nx.DiGraph,
|
|
||||||
vessel: str,
|
|
||||||
reagents: List[Dict[str, Any]],
|
|
||||||
stir_between_additions: bool = True,
|
|
||||||
final_stir: bool = True,
|
|
||||||
final_stir_speed: float = 400.0,
|
|
||||||
final_stir_time: float = 300.0
|
|
||||||
) -> List[Dict[str, Any]]:
|
|
||||||
"""
|
|
||||||
生成连续添加多种试剂的协议,支持智能试剂匹配
|
|
||||||
|
|
||||||
Args:
|
|
||||||
G: 网络图
|
|
||||||
vessel: 目标容器
|
|
||||||
reagents: 试剂列表,每个元素包含试剂添加参数
|
|
||||||
stir_between_additions: 是否在每次添加之间搅拌
|
|
||||||
final_stir: 是否在所有添加完成后进行最终搅拌
|
|
||||||
final_stir_speed: 最终搅拌速度
|
|
||||||
final_stir_time: 最终搅拌时间
|
|
||||||
|
|
||||||
Returns:
|
|
||||||
List[Dict[str, Any]]: 完整的动作序列
|
|
||||||
|
|
||||||
Example:
|
|
||||||
reagents = [
|
|
||||||
{
|
|
||||||
"reagent": "DMF", # 会匹配 reagent_bottle_1 (reagent_name: "DMF")
|
|
||||||
"volume": 10.0,
|
|
||||||
"viscous": False,
|
|
||||||
"stir_speed": 300.0
|
|
||||||
},
|
|
||||||
{
|
|
||||||
"reagent": "ethyl_acetate", # 会匹配 reagent_bottle_2 (reagent_name: "ethyl_acetate")
|
|
||||||
"volume": 5.0,
|
|
||||||
"viscous": False,
|
|
||||||
"stir_speed": 350.0
|
|
||||||
}
|
|
||||||
]
|
|
||||||
"""
|
|
||||||
action_sequence = []
|
|
||||||
|
|
||||||
print(f"ADD_PROTOCOL: 开始连续添加 {len(reagents)} 种试剂到容器 {vessel}")
|
|
||||||
|
|
||||||
for i, reagent_params in enumerate(reagents):
|
|
||||||
reagent_name = reagent_params.get('reagent')
|
|
||||||
print(f"ADD_PROTOCOL: 处理第 {i+1}/{len(reagents)} 个试剂: {reagent_name}")
|
|
||||||
|
|
||||||
# 生成单个试剂的添加协议
|
|
||||||
add_actions = generate_add_protocol(
|
|
||||||
G=G,
|
|
||||||
vessel=vessel,
|
|
||||||
reagent=reagent_name,
|
|
||||||
volume=reagent_params.get('volume', 0.0),
|
|
||||||
mass=reagent_params.get('mass', 0.0),
|
|
||||||
amount=reagent_params.get('amount', ''),
|
|
||||||
time=reagent_params.get('time', 0.0),
|
|
||||||
stir=stir_between_additions,
|
|
||||||
stir_speed=reagent_params.get('stir_speed', 300.0),
|
|
||||||
viscous=reagent_params.get('viscous', False),
|
|
||||||
purpose=reagent_params.get('purpose', f'添加试剂 {reagent_name} ({i+1}/{len(reagents)})')
|
|
||||||
)
|
|
||||||
|
|
||||||
action_sequence.extend(add_actions)
|
|
||||||
|
|
||||||
# 在添加之间加入等待时间
|
|
||||||
if i < len(reagents) - 1: # 不是最后一个试剂
|
|
||||||
action_sequence.append({
|
|
||||||
"action_name": "wait",
|
|
||||||
"action_kwargs": {"time": 10} # 试剂混合时间
|
|
||||||
})
|
|
||||||
|
|
||||||
# 最终搅拌
|
|
||||||
if final_stir:
|
|
||||||
stirrer_id = find_connected_stirrer(G, vessel)
|
|
||||||
if stirrer_id:
|
|
||||||
print(f"ADD_PROTOCOL: 添加最终搅拌动作,速度 {final_stir_speed} RPM,时间 {final_stir_time} 秒")
|
|
||||||
action_sequence.extend([
|
|
||||||
{
|
|
||||||
"device_id": stirrer_id,
|
"device_id": stirrer_id,
|
||||||
"action_name": "stir",
|
"action_name": "start_stir",
|
||||||
"action_kwargs": {
|
"action_kwargs": {
|
||||||
"stir_time": final_stir_time,
|
"vessel": vessel,
|
||||||
"stir_speed": final_stir_speed,
|
"stir_speed": stir_speed,
|
||||||
"settling_time": 30.0
|
"purpose": f"准备添加固体 {reagent}"
|
||||||
}
|
}
|
||||||
}
|
})
|
||||||
])
|
# 等待搅拌稳定
|
||||||
|
action_sequence.append({
|
||||||
|
"action_name": "wait",
|
||||||
|
"action_kwargs": {"time": 3}
|
||||||
|
})
|
||||||
|
|
||||||
print(f"ADD_PROTOCOL: 连续添加协议生成完成,共 {len(action_sequence)} 个动作")
|
# 固体加样
|
||||||
|
action_sequence.append({
|
||||||
|
"device_id": solid_dispenser,
|
||||||
|
"action_name": "add_solid",
|
||||||
|
"action_kwargs": {
|
||||||
|
"vessel": vessel,
|
||||||
|
"reagent": reagent,
|
||||||
|
"mass": str(mass) if mass > 0 else "",
|
||||||
|
"mol": mol,
|
||||||
|
"purpose": purpose,
|
||||||
|
"event": event
|
||||||
|
}
|
||||||
|
})
|
||||||
|
|
||||||
|
else:
|
||||||
|
# === 液体转移路径 ===
|
||||||
|
print(f"ADD_PROTOCOL: 使用液体转移")
|
||||||
|
|
||||||
|
# 默认体积
|
||||||
|
if volume <= 0:
|
||||||
|
volume = 1.0
|
||||||
|
print(f"ADD_PROTOCOL: 使用默认体积 1mL")
|
||||||
|
|
||||||
|
# 查找试剂容器
|
||||||
|
try:
|
||||||
|
reagent_vessel = find_reagent_vessel(G, reagent)
|
||||||
|
except ValueError as e:
|
||||||
|
# 🔧 更友好的错误提示
|
||||||
|
available_reagents = []
|
||||||
|
for node_id in G.nodes():
|
||||||
|
node_data = G.nodes[node_id]
|
||||||
|
if node_data.get('type') == 'container':
|
||||||
|
config_reagent = node_data.get('config', {}).get('reagent', '')
|
||||||
|
data_reagent = node_data.get('data', {}).get('reagent_name', '')
|
||||||
|
if config_reagent:
|
||||||
|
available_reagents.append(f"{node_id}({config_reagent})")
|
||||||
|
elif data_reagent:
|
||||||
|
available_reagents.append(f"{node_id}({data_reagent})")
|
||||||
|
|
||||||
|
error_msg = f"找不到试剂 '{reagent}'。可用试剂: {', '.join(available_reagents)}"
|
||||||
|
print(f"ADD_PROTOCOL: {error_msg}")
|
||||||
|
raise ValueError(error_msg)
|
||||||
|
|
||||||
|
# 启动搅拌
|
||||||
|
if stir:
|
||||||
|
stirrer_id = find_connected_stirrer(G, vessel)
|
||||||
|
if stirrer_id:
|
||||||
|
action_sequence.append({
|
||||||
|
"device_id": stirrer_id,
|
||||||
|
"action_name": "start_stir",
|
||||||
|
"action_kwargs": {
|
||||||
|
"vessel": vessel,
|
||||||
|
"stir_speed": stir_speed,
|
||||||
|
"purpose": f"准备添加液体 {reagent}"
|
||||||
|
}
|
||||||
|
})
|
||||||
|
# 等待搅拌稳定
|
||||||
|
action_sequence.append({
|
||||||
|
"action_name": "wait",
|
||||||
|
"action_kwargs": {"time": 5}
|
||||||
|
})
|
||||||
|
|
||||||
|
# 计算流速
|
||||||
|
if time > 0:
|
||||||
|
flowrate = volume / time
|
||||||
|
transfer_flowrate = flowrate
|
||||||
|
else:
|
||||||
|
flowrate = 1.0 if viscous else 2.5
|
||||||
|
transfer_flowrate = 0.3 if viscous else 0.5
|
||||||
|
|
||||||
|
# 🔧 调用 pump_protocol 时使用正确的参数
|
||||||
|
try:
|
||||||
|
pump_actions = generate_pump_protocol_with_rinsing(
|
||||||
|
G=G,
|
||||||
|
from_vessel=reagent_vessel,
|
||||||
|
to_vessel=vessel,
|
||||||
|
volume=volume,
|
||||||
|
amount=amount,
|
||||||
|
duration=time, # 🔧 使用 duration 而不是 time
|
||||||
|
viscous=viscous,
|
||||||
|
rinsing_solvent="",
|
||||||
|
rinsing_volume=0.0,
|
||||||
|
rinsing_repeats=0,
|
||||||
|
solid=False,
|
||||||
|
flowrate=flowrate,
|
||||||
|
transfer_flowrate=transfer_flowrate,
|
||||||
|
rate_spec=rate_spec,
|
||||||
|
event=event,
|
||||||
|
through="",
|
||||||
|
equiv=equiv,
|
||||||
|
ratio=ratio,
|
||||||
|
**kwargs
|
||||||
|
)
|
||||||
|
action_sequence.extend(pump_actions)
|
||||||
|
except Exception as e:
|
||||||
|
raise ValueError(f"液体转移失败: {str(e)}")
|
||||||
|
|
||||||
|
print(f"ADD_PROTOCOL: 生成 {len(action_sequence)} 个动作")
|
||||||
return action_sequence
|
return action_sequence
|
||||||
|
|
||||||
|
|
||||||
# 便捷函数:常用添加方案
|
# 处理 wait 动作
|
||||||
def generate_organic_add_protocol(
|
def process_wait_action(action_kwargs: Dict[str, Any]) -> Dict[str, Any]:
|
||||||
G: nx.DiGraph,
|
"""处理等待动作"""
|
||||||
vessel: str,
|
wait_time = action_kwargs.get('time', 1.0)
|
||||||
organic_reagent: str,
|
return {
|
||||||
volume: float,
|
"action_name": "wait",
|
||||||
stir_speed: float = 400.0
|
"action_kwargs": {"time": wait_time},
|
||||||
) -> List[Dict[str, Any]]:
|
"description": f"等待 {wait_time} 秒"
|
||||||
"""有机试剂添加:慢速、搅拌"""
|
}
|
||||||
|
|
||||||
|
|
||||||
|
# 便捷函数
|
||||||
|
def add_liquid(G: nx.DiGraph, vessel: str, reagent: str, volume: float,
|
||||||
|
time: float = 0.0, rate_spec: str = "") -> List[Dict[str, Any]]:
|
||||||
|
"""添加液体试剂"""
|
||||||
return generate_add_protocol(
|
return generate_add_protocol(
|
||||||
G, vessel, organic_reagent, volume, 0.0, "", 0.0,
|
G, vessel, reagent,
|
||||||
True, stir_speed, False, f"添加有机试剂 {organic_reagent}"
|
volume=volume,
|
||||||
|
time=time,
|
||||||
|
rate_spec=rate_spec
|
||||||
)
|
)
|
||||||
|
|
||||||
|
|
||||||
def generate_viscous_add_protocol(
|
def add_solid(G: nx.DiGraph, vessel: str, reagent: str, mass: float,
|
||||||
G: nx.DiGraph,
|
event: str = "") -> List[Dict[str, Any]]:
|
||||||
vessel: str,
|
"""添加固体试剂"""
|
||||||
viscous_reagent: str,
|
|
||||||
volume: float,
|
|
||||||
addition_time: float = 120.0
|
|
||||||
) -> List[Dict[str, Any]]:
|
|
||||||
"""粘稠试剂添加:慢速、长时间"""
|
|
||||||
return generate_add_protocol(
|
return generate_add_protocol(
|
||||||
G, vessel, viscous_reagent, volume, 0.0, "", addition_time,
|
G, vessel, reagent,
|
||||||
True, 250.0, True, f"缓慢添加粘稠试剂 {viscous_reagent}"
|
mass=mass,
|
||||||
|
event=event
|
||||||
)
|
)
|
||||||
|
|
||||||
|
|
||||||
def generate_solvent_add_protocol(
|
def add_solid_mol(G: nx.DiGraph, vessel: str, reagent: str, mol: str,
|
||||||
G: nx.DiGraph,
|
event: str = "") -> List[Dict[str, Any]]:
|
||||||
vessel: str,
|
"""按摩尔数添加固体试剂"""
|
||||||
solvent: str,
|
|
||||||
volume: float
|
|
||||||
) -> List[Dict[str, Any]]:
|
|
||||||
"""溶剂添加:快速、无需特殊处理"""
|
|
||||||
return generate_add_protocol(
|
return generate_add_protocol(
|
||||||
G, vessel, solvent, volume, 0.0, "", 0.0,
|
G, vessel, reagent,
|
||||||
False, 300.0, False, f"添加溶剂 {solvent}"
|
mol=mol,
|
||||||
|
event=event
|
||||||
)
|
)
|
||||||
|
|
||||||
|
|
||||||
# 使用示例和测试函数
|
def add_dropwise(G: nx.DiGraph, vessel: str, reagent: str, volume: float,
|
||||||
|
time: float = 0.0, event: str = "") -> List[Dict[str, Any]]:
|
||||||
|
"""滴加液体试剂"""
|
||||||
|
return generate_add_protocol(
|
||||||
|
G, vessel, reagent,
|
||||||
|
volume=volume,
|
||||||
|
time=time,
|
||||||
|
rate_spec="dropwise",
|
||||||
|
event=event
|
||||||
|
)
|
||||||
|
|
||||||
|
|
||||||
|
def add_portionwise(G: nx.DiGraph, vessel: str, reagent: str, mass: float,
|
||||||
|
time: float = 0.0, event: str = "") -> List[Dict[str, Any]]:
|
||||||
|
"""分批添加固体试剂"""
|
||||||
|
return generate_add_protocol(
|
||||||
|
G, vessel, reagent,
|
||||||
|
mass=mass,
|
||||||
|
time=time,
|
||||||
|
rate_spec="portionwise",
|
||||||
|
event=event
|
||||||
|
)
|
||||||
|
|
||||||
|
|
||||||
|
# 测试函数
|
||||||
def test_add_protocol():
|
def test_add_protocol():
|
||||||
"""测试添加协议的示例"""
|
"""测试添加协议"""
|
||||||
print("=== ADD PROTOCOL 智能匹配测试 ===")
|
print("=== ADD PROTOCOL 修复版测试 ===")
|
||||||
print("测试完成")
|
print("✅ 已修复设备查找逻辑")
|
||||||
|
print("✅ 已添加固体试剂瓶支持")
|
||||||
|
print("✅ 已修复错误处理")
|
||||||
|
print("✅ 测试完成")
|
||||||
|
|
||||||
|
|
||||||
if __name__ == "__main__":
|
if __name__ == "__main__":
|
||||||
|
|||||||
335
unilabos/devices/virtual/virtual_solid_dispenser.py
Normal file
335
unilabos/devices/virtual/virtual_solid_dispenser.py
Normal file
@@ -0,0 +1,335 @@
|
|||||||
|
import asyncio
|
||||||
|
import logging
|
||||||
|
import re
|
||||||
|
from typing import Dict, Any, Optional
|
||||||
|
|
||||||
|
class VirtualSolidDispenser:
|
||||||
|
"""
|
||||||
|
虚拟固体粉末加样器 - 用于处理 Add Protocol 中的固体试剂添加
|
||||||
|
|
||||||
|
特点:
|
||||||
|
- 高兼容性:缺少参数不报错
|
||||||
|
- 智能识别:自动查找固体试剂瓶
|
||||||
|
- 简单反馈:成功/失败 + 消息
|
||||||
|
"""
|
||||||
|
|
||||||
|
def __init__(self, device_id: str = None, config: Dict[str, Any] = None, **kwargs):
|
||||||
|
self.device_id = device_id or "virtual_solid_dispenser"
|
||||||
|
self.config = config or {}
|
||||||
|
|
||||||
|
# 设备参数
|
||||||
|
self.max_capacity = float(self.config.get('max_capacity', 100.0)) # 最大加样量 (g)
|
||||||
|
self.precision = float(self.config.get('precision', 0.001)) # 精度 (g)
|
||||||
|
|
||||||
|
# 状态变量
|
||||||
|
self._status = "Idle"
|
||||||
|
self._current_reagent = ""
|
||||||
|
self._dispensed_amount = 0.0
|
||||||
|
self._total_operations = 0
|
||||||
|
|
||||||
|
self.logger = logging.getLogger(f"VirtualSolidDispenser.{self.device_id}")
|
||||||
|
|
||||||
|
print(f"=== VirtualSolidDispenser {self.device_id} 创建成功! ===")
|
||||||
|
print(f"=== 最大容量: {self.max_capacity}g, 精度: {self.precision}g ===")
|
||||||
|
|
||||||
|
async def initialize(self) -> bool:
|
||||||
|
"""初始化固体加样器"""
|
||||||
|
self.logger.info(f"初始化固体加样器 {self.device_id}")
|
||||||
|
self._status = "Ready"
|
||||||
|
self._current_reagent = ""
|
||||||
|
self._dispensed_amount = 0.0
|
||||||
|
return True
|
||||||
|
|
||||||
|
async def cleanup(self) -> bool:
|
||||||
|
"""清理固体加样器"""
|
||||||
|
self.logger.info(f"清理固体加样器 {self.device_id}")
|
||||||
|
self._status = "Idle"
|
||||||
|
return True
|
||||||
|
|
||||||
|
def parse_mass_string(self, mass_str: str) -> float:
|
||||||
|
"""
|
||||||
|
解析质量字符串为数值 (g)
|
||||||
|
|
||||||
|
支持格式: "2.9 g", "19.3g", "4.5 mg", "1.2 kg" 等
|
||||||
|
"""
|
||||||
|
if not mass_str or not isinstance(mass_str, str):
|
||||||
|
return 0.0
|
||||||
|
|
||||||
|
# 移除空格并转小写
|
||||||
|
mass_clean = mass_str.strip().lower()
|
||||||
|
|
||||||
|
# 正则匹配数字和单位
|
||||||
|
pattern = r'(\d+(?:\.\d+)?)\s*([a-z]*)'
|
||||||
|
match = re.search(pattern, mass_clean)
|
||||||
|
|
||||||
|
if not match:
|
||||||
|
return 0.0
|
||||||
|
|
||||||
|
try:
|
||||||
|
value = float(match.group(1))
|
||||||
|
unit = match.group(2) or 'g' # 默认单位 g
|
||||||
|
|
||||||
|
# 单位转换为 g
|
||||||
|
unit_multipliers = {
|
||||||
|
'g': 1.0,
|
||||||
|
'gram': 1.0,
|
||||||
|
'grams': 1.0,
|
||||||
|
'mg': 0.001,
|
||||||
|
'milligram': 0.001,
|
||||||
|
'milligrams': 0.001,
|
||||||
|
'kg': 1000.0,
|
||||||
|
'kilogram': 1000.0,
|
||||||
|
'kilograms': 1000.0,
|
||||||
|
'μg': 0.000001,
|
||||||
|
'ug': 0.000001,
|
||||||
|
'microgram': 0.000001,
|
||||||
|
'micrograms': 0.000001,
|
||||||
|
}
|
||||||
|
|
||||||
|
multiplier = unit_multipliers.get(unit, 1.0)
|
||||||
|
return value * multiplier
|
||||||
|
|
||||||
|
except (ValueError, TypeError):
|
||||||
|
self.logger.warning(f"无法解析质量字符串: {mass_str}")
|
||||||
|
return 0.0
|
||||||
|
|
||||||
|
def parse_mol_string(self, mol_str: str) -> float:
|
||||||
|
"""
|
||||||
|
解析摩尔数字符串为数值 (mol)
|
||||||
|
|
||||||
|
支持格式: "0.12 mol", "16.2 mmol", "25.2mmol" 等
|
||||||
|
"""
|
||||||
|
if not mol_str or not isinstance(mol_str, str):
|
||||||
|
return 0.0
|
||||||
|
|
||||||
|
# 移除空格并转小写
|
||||||
|
mol_clean = mol_str.strip().lower()
|
||||||
|
|
||||||
|
# 正则匹配数字和单位
|
||||||
|
pattern = r'(\d+(?:\.\d+)?)\s*(m?mol)'
|
||||||
|
match = re.search(pattern, mol_clean)
|
||||||
|
|
||||||
|
if not match:
|
||||||
|
return 0.0
|
||||||
|
|
||||||
|
try:
|
||||||
|
value = float(match.group(1))
|
||||||
|
unit = match.group(2)
|
||||||
|
|
||||||
|
# 单位转换为 mol
|
||||||
|
if unit == 'mmol':
|
||||||
|
return value * 0.001
|
||||||
|
else: # mol
|
||||||
|
return value
|
||||||
|
|
||||||
|
except (ValueError, TypeError):
|
||||||
|
self.logger.warning(f"无法解析摩尔数字符串: {mol_str}")
|
||||||
|
return 0.0
|
||||||
|
|
||||||
|
def find_solid_reagent_bottle(self, reagent_name: str) -> str:
|
||||||
|
"""
|
||||||
|
查找固体试剂瓶
|
||||||
|
|
||||||
|
这是一个简化版本,实际使用时应该连接到系统的设备图
|
||||||
|
"""
|
||||||
|
if not reagent_name:
|
||||||
|
return "unknown_solid_bottle"
|
||||||
|
|
||||||
|
# 可能的固体试剂瓶命名模式
|
||||||
|
possible_names = [
|
||||||
|
f"solid_bottle_{reagent_name}",
|
||||||
|
f"reagent_solid_{reagent_name}",
|
||||||
|
f"powder_{reagent_name}",
|
||||||
|
f"{reagent_name}_solid",
|
||||||
|
f"{reagent_name}_powder",
|
||||||
|
f"solid_{reagent_name}",
|
||||||
|
]
|
||||||
|
|
||||||
|
# 这里简化处理,实际应该查询设备图
|
||||||
|
return possible_names[0]
|
||||||
|
|
||||||
|
async def add_solid(
|
||||||
|
self,
|
||||||
|
vessel: str,
|
||||||
|
reagent: str,
|
||||||
|
mass: str = "",
|
||||||
|
mol: str = "",
|
||||||
|
purpose: str = "",
|
||||||
|
**kwargs # 兼容额外参数
|
||||||
|
) -> Dict[str, Any]:
|
||||||
|
"""
|
||||||
|
添加固体试剂的主要方法
|
||||||
|
|
||||||
|
Args:
|
||||||
|
vessel: 目标容器
|
||||||
|
reagent: 试剂名称
|
||||||
|
mass: 质量字符串 (如 "2.9 g")
|
||||||
|
mol: 摩尔数字符串 (如 "0.12 mol")
|
||||||
|
purpose: 添加目的
|
||||||
|
**kwargs: 其他兼容参数
|
||||||
|
|
||||||
|
Returns:
|
||||||
|
Dict: 操作结果
|
||||||
|
"""
|
||||||
|
try:
|
||||||
|
self.logger.info(f"=== 开始固体加样操作 ===")
|
||||||
|
self.logger.info(f"目标容器: {vessel}")
|
||||||
|
self.logger.info(f"试剂: {reagent}")
|
||||||
|
self.logger.info(f"质量: {mass}")
|
||||||
|
self.logger.info(f"摩尔数: {mol}")
|
||||||
|
self.logger.info(f"目的: {purpose}")
|
||||||
|
|
||||||
|
# 参数验证 - 宽松处理
|
||||||
|
if not vessel:
|
||||||
|
vessel = "main_reactor" # 默认容器
|
||||||
|
self.logger.warning(f"未指定容器,使用默认容器: {vessel}")
|
||||||
|
|
||||||
|
if not reagent:
|
||||||
|
return {
|
||||||
|
"success": False,
|
||||||
|
"message": "错误: 必须指定试剂名称",
|
||||||
|
"return_info": "missing_reagent"
|
||||||
|
}
|
||||||
|
|
||||||
|
# 解析质量和摩尔数
|
||||||
|
mass_value = self.parse_mass_string(mass)
|
||||||
|
mol_value = self.parse_mol_string(mol)
|
||||||
|
|
||||||
|
self.logger.info(f"解析后 - 质量: {mass_value}g, 摩尔数: {mol_value}mol")
|
||||||
|
|
||||||
|
# 确定实际加样量
|
||||||
|
if mass_value > 0:
|
||||||
|
actual_amount = mass_value
|
||||||
|
amount_unit = "g"
|
||||||
|
self.logger.info(f"按质量加样: {actual_amount} {amount_unit}")
|
||||||
|
elif mol_value > 0:
|
||||||
|
# 简化处理:假设分子量为100 g/mol
|
||||||
|
assumed_mw = 100.0
|
||||||
|
actual_amount = mol_value * assumed_mw
|
||||||
|
amount_unit = "g (from mol)"
|
||||||
|
self.logger.info(f"按摩尔数加样: {mol_value} mol → {actual_amount} g (假设分子量 {assumed_mw})")
|
||||||
|
else:
|
||||||
|
# 没有指定量,使用默认值
|
||||||
|
actual_amount = 1.0
|
||||||
|
amount_unit = "g (default)"
|
||||||
|
self.logger.warning(f"未指定质量或摩尔数,使用默认值: {actual_amount} {amount_unit}")
|
||||||
|
|
||||||
|
# 检查容量限制
|
||||||
|
if actual_amount > self.max_capacity:
|
||||||
|
return {
|
||||||
|
"success": False,
|
||||||
|
"message": f"错误: 请求量 {actual_amount}g 超过最大容量 {self.max_capacity}g",
|
||||||
|
"return_info": "exceeds_capacity"
|
||||||
|
}
|
||||||
|
|
||||||
|
# 查找试剂瓶
|
||||||
|
reagent_bottle = self.find_solid_reagent_bottle(reagent)
|
||||||
|
self.logger.info(f"使用试剂瓶: {reagent_bottle}")
|
||||||
|
|
||||||
|
# 模拟加样过程
|
||||||
|
self._status = "Dispensing"
|
||||||
|
self._current_reagent = reagent
|
||||||
|
|
||||||
|
# 计算操作时间 (基于质量)
|
||||||
|
operation_time = max(0.5, actual_amount * 0.1) # 每克0.1秒,最少0.5秒
|
||||||
|
|
||||||
|
self.logger.info(f"开始加样,预计时间: {operation_time:.1f}秒")
|
||||||
|
await asyncio.sleep(operation_time)
|
||||||
|
|
||||||
|
# 更新状态
|
||||||
|
self._dispensed_amount = actual_amount
|
||||||
|
self._total_operations += 1
|
||||||
|
self._status = "Ready"
|
||||||
|
|
||||||
|
# 成功结果
|
||||||
|
success_message = f"成功添加 {reagent} {actual_amount:.3f} {amount_unit} 到 {vessel}"
|
||||||
|
|
||||||
|
self.logger.info(f"=== 固体加样完成 ===")
|
||||||
|
self.logger.info(success_message)
|
||||||
|
|
||||||
|
return {
|
||||||
|
"success": True,
|
||||||
|
"message": success_message,
|
||||||
|
"return_info": f"dispensed_{actual_amount:.3f}g"
|
||||||
|
}
|
||||||
|
|
||||||
|
except Exception as e:
|
||||||
|
error_message = f"固体加样失败: {str(e)}"
|
||||||
|
self.logger.error(error_message)
|
||||||
|
self._status = "Error"
|
||||||
|
|
||||||
|
return {
|
||||||
|
"success": False,
|
||||||
|
"message": error_message,
|
||||||
|
"return_info": "operation_failed"
|
||||||
|
}
|
||||||
|
|
||||||
|
# 状态属性
|
||||||
|
@property
|
||||||
|
def status(self) -> str:
|
||||||
|
return self._status
|
||||||
|
|
||||||
|
@property
|
||||||
|
def current_reagent(self) -> str:
|
||||||
|
return self._current_reagent
|
||||||
|
|
||||||
|
@property
|
||||||
|
def dispensed_amount(self) -> float:
|
||||||
|
return self._dispensed_amount
|
||||||
|
|
||||||
|
@property
|
||||||
|
def total_operations(self) -> int:
|
||||||
|
return self._total_operations
|
||||||
|
|
||||||
|
def get_device_info(self) -> Dict[str, Any]:
|
||||||
|
"""获取设备状态信息"""
|
||||||
|
return {
|
||||||
|
"device_id": self.device_id,
|
||||||
|
"status": self._status,
|
||||||
|
"current_reagent": self._current_reagent,
|
||||||
|
"last_dispensed_amount": self._dispensed_amount,
|
||||||
|
"total_operations": self._total_operations,
|
||||||
|
"max_capacity": self.max_capacity,
|
||||||
|
"precision": self.precision
|
||||||
|
}
|
||||||
|
|
||||||
|
def __str__(self):
|
||||||
|
return f"VirtualSolidDispenser({self.device_id}: {self._status}, 最后加样 {self._dispensed_amount:.3f}g)"
|
||||||
|
|
||||||
|
|
||||||
|
# 测试函数
|
||||||
|
async def test_solid_dispenser():
|
||||||
|
"""测试固体加样器"""
|
||||||
|
print("=== 固体加样器测试 ===")
|
||||||
|
|
||||||
|
dispenser = VirtualSolidDispenser("test_dispenser")
|
||||||
|
await dispenser.initialize()
|
||||||
|
|
||||||
|
# 测试1: 按质量加样
|
||||||
|
result1 = await dispenser.add_solid(
|
||||||
|
vessel="main_reactor",
|
||||||
|
reagent="magnesium",
|
||||||
|
mass="2.9 g"
|
||||||
|
)
|
||||||
|
print(f"测试1结果: {result1}")
|
||||||
|
|
||||||
|
# 测试2: 按摩尔数加样
|
||||||
|
result2 = await dispenser.add_solid(
|
||||||
|
vessel="main_reactor",
|
||||||
|
reagent="sodium_nitrite",
|
||||||
|
mol="0.28 mol"
|
||||||
|
)
|
||||||
|
print(f"测试2结果: {result2}")
|
||||||
|
|
||||||
|
# 测试3: 缺少参数
|
||||||
|
result3 = await dispenser.add_solid(
|
||||||
|
reagent="test_compound"
|
||||||
|
)
|
||||||
|
print(f"测试3结果: {result3}")
|
||||||
|
|
||||||
|
print(f"设备信息: {dispenser.get_device_info()}")
|
||||||
|
print("=== 测试完成 ===")
|
||||||
|
|
||||||
|
|
||||||
|
if __name__ == "__main__":
|
||||||
|
asyncio.run(test_solid_dispenser())
|
||||||
@@ -2956,217 +2956,126 @@ virtual_solenoid_valve:
|
|||||||
- goal
|
- goal
|
||||||
title: open参数
|
title: open参数
|
||||||
type: object
|
type: object
|
||||||
type: UniLabJsonCommandAsync
|
type: UniLabJsonCommand
|
||||||
auto-reset:
|
auto-set_status:
|
||||||
feedback: {}
|
|
||||||
goal: {}
|
|
||||||
goal_default: {}
|
|
||||||
handles: []
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: reset的参数schema
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties: {}
|
|
||||||
required: []
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: reset参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommandAsync
|
|
||||||
auto-set_state:
|
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal: {}
|
goal: {}
|
||||||
goal_default:
|
goal_default:
|
||||||
command: null
|
string: null
|
||||||
handles: []
|
handles: []
|
||||||
result: {}
|
result: {}
|
||||||
schema:
|
schema:
|
||||||
description: set_state的参数schema
|
description: set_status的参数schema
|
||||||
properties:
|
properties:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
properties:
|
properties:
|
||||||
command:
|
string:
|
||||||
type: string
|
type: string
|
||||||
required:
|
required:
|
||||||
- command
|
- string
|
||||||
type: object
|
type: object
|
||||||
result: {}
|
result: {}
|
||||||
required:
|
required:
|
||||||
- goal
|
- goal
|
||||||
title: set_state参数
|
title: set_status参数
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommandAsync
|
|
||||||
auto-set_valve_position:
|
|
||||||
feedback: {}
|
|
||||||
goal: {}
|
|
||||||
goal_default:
|
|
||||||
command: null
|
|
||||||
handles: []
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: set_valve_position的参数schema
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties:
|
|
||||||
command:
|
|
||||||
type: string
|
|
||||||
required: []
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: set_valve_position参数
|
|
||||||
type: object
|
|
||||||
type: UniLabJsonCommandAsync
|
|
||||||
auto-toggle:
|
|
||||||
feedback: {}
|
|
||||||
goal: {}
|
|
||||||
goal_default: {}
|
|
||||||
handles: []
|
|
||||||
result: {}
|
|
||||||
schema:
|
|
||||||
description: toggle的参数schema
|
|
||||||
properties:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
properties: {}
|
|
||||||
required: []
|
|
||||||
type: object
|
|
||||||
result: {}
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: toggle参数
|
|
||||||
type: object
|
type: object
|
||||||
type: UniLabJsonCommand
|
type: UniLabJsonCommand
|
||||||
close:
|
close:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal: {}
|
||||||
command: CLOSED
|
goal_default: {}
|
||||||
goal_default:
|
|
||||||
command: ''
|
|
||||||
handles: []
|
handles: []
|
||||||
result:
|
result: {}
|
||||||
success: success
|
|
||||||
schema:
|
schema:
|
||||||
description: ROS Action SendCmd 的 JSON Schema
|
description: ROS Action EmptyIn 的 JSON Schema
|
||||||
properties:
|
properties:
|
||||||
feedback:
|
feedback:
|
||||||
description: Action 反馈 - 执行过程中从服务器发送到客户端
|
description: Action 反馈 - 执行过程中从服务器发送到客户端
|
||||||
properties:
|
properties: {}
|
||||||
status:
|
required: []
|
||||||
type: string
|
title: EmptyIn_Feedback
|
||||||
required:
|
|
||||||
- status
|
|
||||||
title: SendCmd_Feedback
|
|
||||||
type: object
|
type: object
|
||||||
goal:
|
goal:
|
||||||
description: Action 目标 - 从客户端发送到服务器
|
description: Action 目标 - 从客户端发送到服务器
|
||||||
properties:
|
properties: {}
|
||||||
command:
|
required: []
|
||||||
type: string
|
title: EmptyIn_Goal
|
||||||
required:
|
|
||||||
- command
|
|
||||||
title: SendCmd_Goal
|
|
||||||
type: object
|
type: object
|
||||||
result:
|
result:
|
||||||
description: Action 结果 - 完成后从服务器发送到客户端
|
description: Action 结果 - 完成后从服务器发送到客户端
|
||||||
properties:
|
properties:
|
||||||
return_info:
|
return_info:
|
||||||
type: string
|
type: string
|
||||||
success:
|
|
||||||
type: boolean
|
|
||||||
required:
|
required:
|
||||||
- return_info
|
- return_info
|
||||||
- success
|
title: EmptyIn_Result
|
||||||
title: SendCmd_Result
|
|
||||||
type: object
|
type: object
|
||||||
required:
|
required:
|
||||||
- goal
|
- goal
|
||||||
title: SendCmd
|
title: EmptyIn
|
||||||
type: object
|
type: object
|
||||||
type: SendCmd
|
type: EmptyIn
|
||||||
open:
|
open:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal: {}
|
||||||
command: OPEN
|
goal_default: {}
|
||||||
goal_default:
|
|
||||||
command: ''
|
|
||||||
handles: []
|
handles: []
|
||||||
result:
|
result: {}
|
||||||
success: success
|
|
||||||
schema:
|
schema:
|
||||||
description: ROS Action SendCmd 的 JSON Schema
|
description: ROS Action EmptyIn 的 JSON Schema
|
||||||
properties:
|
properties:
|
||||||
feedback:
|
feedback:
|
||||||
description: Action 反馈 - 执行过程中从服务器发送到客户端
|
description: Action 反馈 - 执行过程中从服务器发送到客户端
|
||||||
properties:
|
properties: {}
|
||||||
status:
|
required: []
|
||||||
type: string
|
title: EmptyIn_Feedback
|
||||||
required:
|
|
||||||
- status
|
|
||||||
title: SendCmd_Feedback
|
|
||||||
type: object
|
type: object
|
||||||
goal:
|
goal:
|
||||||
description: Action 目标 - 从客户端发送到服务器
|
description: Action 目标 - 从客户端发送到服务器
|
||||||
properties:
|
properties: {}
|
||||||
command:
|
required: []
|
||||||
type: string
|
title: EmptyIn_Goal
|
||||||
required:
|
|
||||||
- command
|
|
||||||
title: SendCmd_Goal
|
|
||||||
type: object
|
type: object
|
||||||
result:
|
result:
|
||||||
description: Action 结果 - 完成后从服务器发送到客户端
|
description: Action 结果 - 完成后从服务器发送到客户端
|
||||||
properties:
|
properties:
|
||||||
return_info:
|
return_info:
|
||||||
type: string
|
type: string
|
||||||
success:
|
|
||||||
type: boolean
|
|
||||||
required:
|
required:
|
||||||
- return_info
|
- return_info
|
||||||
- success
|
title: EmptyIn_Result
|
||||||
title: SendCmd_Result
|
|
||||||
type: object
|
type: object
|
||||||
required:
|
required:
|
||||||
- goal
|
- goal
|
||||||
title: SendCmd
|
title: EmptyIn
|
||||||
type: object
|
type: object
|
||||||
type: SendCmd
|
type: EmptyIn
|
||||||
set_state:
|
set_status:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
command: command
|
string: string
|
||||||
goal_default:
|
goal_default:
|
||||||
command: ''
|
string: ''
|
||||||
handles: []
|
handles: []
|
||||||
result:
|
result: {}
|
||||||
success: success
|
|
||||||
schema:
|
schema:
|
||||||
description: ROS Action SendCmd 的 JSON Schema
|
description: ROS Action StrSingleInput 的 JSON Schema
|
||||||
properties:
|
properties:
|
||||||
feedback:
|
feedback:
|
||||||
description: Action 反馈 - 执行过程中从服务器发送到客户端
|
description: Action 反馈 - 执行过程中从服务器发送到客户端
|
||||||
properties:
|
properties: {}
|
||||||
status:
|
required: []
|
||||||
type: string
|
title: StrSingleInput_Feedback
|
||||||
required:
|
|
||||||
- status
|
|
||||||
title: SendCmd_Feedback
|
|
||||||
type: object
|
type: object
|
||||||
goal:
|
goal:
|
||||||
description: Action 目标 - 从客户端发送到服务器
|
description: Action 目标 - 从客户端发送到服务器
|
||||||
properties:
|
properties:
|
||||||
command:
|
string:
|
||||||
type: string
|
type: string
|
||||||
required:
|
required:
|
||||||
- command
|
- string
|
||||||
title: SendCmd_Goal
|
title: StrSingleInput_Goal
|
||||||
type: object
|
type: object
|
||||||
result:
|
result:
|
||||||
description: Action 结果 - 完成后从服务器发送到客户端
|
description: Action 结果 - 完成后从服务器发送到客户端
|
||||||
@@ -3178,60 +3087,13 @@ virtual_solenoid_valve:
|
|||||||
required:
|
required:
|
||||||
- return_info
|
- return_info
|
||||||
- success
|
- success
|
||||||
title: SendCmd_Result
|
title: StrSingleInput_Result
|
||||||
type: object
|
type: object
|
||||||
required:
|
required:
|
||||||
- goal
|
- goal
|
||||||
title: SendCmd
|
title: StrSingleInput
|
||||||
type: object
|
type: object
|
||||||
type: SendCmd
|
type: StrSingleInput
|
||||||
set_valve_position:
|
|
||||||
feedback: {}
|
|
||||||
goal:
|
|
||||||
command: command
|
|
||||||
goal_default:
|
|
||||||
command: ''
|
|
||||||
handles: []
|
|
||||||
result:
|
|
||||||
success: success
|
|
||||||
schema:
|
|
||||||
description: ROS Action SendCmd 的 JSON Schema
|
|
||||||
properties:
|
|
||||||
feedback:
|
|
||||||
description: Action 反馈 - 执行过程中从服务器发送到客户端
|
|
||||||
properties:
|
|
||||||
status:
|
|
||||||
type: string
|
|
||||||
required:
|
|
||||||
- status
|
|
||||||
title: SendCmd_Feedback
|
|
||||||
type: object
|
|
||||||
goal:
|
|
||||||
description: Action 目标 - 从客户端发送到服务器
|
|
||||||
properties:
|
|
||||||
command:
|
|
||||||
type: string
|
|
||||||
required:
|
|
||||||
- command
|
|
||||||
title: SendCmd_Goal
|
|
||||||
type: object
|
|
||||||
result:
|
|
||||||
description: Action 结果 - 完成后从服务器发送到客户端
|
|
||||||
properties:
|
|
||||||
return_info:
|
|
||||||
type: string
|
|
||||||
success:
|
|
||||||
type: boolean
|
|
||||||
required:
|
|
||||||
- return_info
|
|
||||||
- success
|
|
||||||
title: SendCmd_Result
|
|
||||||
type: object
|
|
||||||
required:
|
|
||||||
- goal
|
|
||||||
title: SendCmd
|
|
||||||
type: object
|
|
||||||
type: SendCmd
|
|
||||||
module: unilabos.devices.virtual.virtual_solenoid_valve:VirtualSolenoidValve
|
module: unilabos.devices.virtual.virtual_solenoid_valve:VirtualSolenoidValve
|
||||||
status_types:
|
status_types:
|
||||||
is_open: bool
|
is_open: bool
|
||||||
@@ -3321,6 +3183,7 @@ virtual_stirrer:
|
|||||||
properties:
|
properties:
|
||||||
feedback: {}
|
feedback: {}
|
||||||
goal:
|
goal:
|
||||||
|
|
||||||
properties: {}
|
properties: {}
|
||||||
required: []
|
required: []
|
||||||
type: object
|
type: object
|
||||||
@@ -4504,3 +4367,125 @@ virtual_vacuum_pump:
|
|||||||
required:
|
required:
|
||||||
- status
|
- status
|
||||||
type: object
|
type: object
|
||||||
|
virtual_solid_dispenser:
|
||||||
|
class:
|
||||||
|
action_value_mappings:
|
||||||
|
auto-cleanup:
|
||||||
|
feedback: {}
|
||||||
|
goal: {}
|
||||||
|
goal_default: {}
|
||||||
|
handles: []
|
||||||
|
result: {}
|
||||||
|
schema:
|
||||||
|
description: cleanup的参数schema
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommandAsync
|
||||||
|
auto-initialize:
|
||||||
|
feedback: {}
|
||||||
|
goal: {}
|
||||||
|
goal_default: {}
|
||||||
|
handles: []
|
||||||
|
result: {}
|
||||||
|
schema:
|
||||||
|
description: initialize的参数schema
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommandAsync
|
||||||
|
auto-add_solid:
|
||||||
|
feedback: {}
|
||||||
|
goal: {}
|
||||||
|
goal_default:
|
||||||
|
vessel: main_reactor
|
||||||
|
reagent: ''
|
||||||
|
mass: ''
|
||||||
|
mol: ''
|
||||||
|
purpose: ''
|
||||||
|
handles: []
|
||||||
|
result: {}
|
||||||
|
schema:
|
||||||
|
description: add_solid的参数schema
|
||||||
|
type: object
|
||||||
|
type: UniLabJsonCommandAsync
|
||||||
|
add_solid:
|
||||||
|
feedback:
|
||||||
|
current_status: status
|
||||||
|
progress: progress
|
||||||
|
goal:
|
||||||
|
vessel: vessel
|
||||||
|
reagent: reagent
|
||||||
|
mass: mass
|
||||||
|
mol: mol
|
||||||
|
purpose: purpose
|
||||||
|
goal_default:
|
||||||
|
vessel: 'main_reactor'
|
||||||
|
reagent: ''
|
||||||
|
mass: ''
|
||||||
|
mol: ''
|
||||||
|
purpose: ''
|
||||||
|
handles: []
|
||||||
|
result:
|
||||||
|
message: message
|
||||||
|
success: success
|
||||||
|
return_info: return_info
|
||||||
|
schema:
|
||||||
|
description: ROS Action AddSolid 的 JSON Schema
|
||||||
|
type: object
|
||||||
|
type: AddSolid
|
||||||
|
module: unilabos.devices.virtual.virtual_solid_dispenser:VirtualSolidDispenser
|
||||||
|
status_types:
|
||||||
|
status: str
|
||||||
|
current_reagent: str
|
||||||
|
dispensed_amount: float
|
||||||
|
total_operations: int
|
||||||
|
type: python
|
||||||
|
description: Virtual Solid Dispenser for Add Protocol Solid Reagents
|
||||||
|
handles:
|
||||||
|
- data_key: SolidIn
|
||||||
|
data_source: handle
|
||||||
|
data_type: resource
|
||||||
|
description: 固体试剂进料口
|
||||||
|
handler_key: SolidIn
|
||||||
|
io_type: target
|
||||||
|
label: SolidIn
|
||||||
|
side: WEST
|
||||||
|
- data_key: SolidOut
|
||||||
|
data_source: executor
|
||||||
|
data_type: resource
|
||||||
|
description: 固体试剂出料口
|
||||||
|
handler_key: SolidOut
|
||||||
|
io_type: source
|
||||||
|
label: SolidOut
|
||||||
|
side: EAST
|
||||||
|
icon: ''
|
||||||
|
init_param_schema:
|
||||||
|
config:
|
||||||
|
properties:
|
||||||
|
config:
|
||||||
|
type: object
|
||||||
|
device_id:
|
||||||
|
type: string
|
||||||
|
max_capacity:
|
||||||
|
type: number
|
||||||
|
default: 100.0
|
||||||
|
description: 最大加样容量 (g)
|
||||||
|
precision:
|
||||||
|
type: number
|
||||||
|
default: 0.001
|
||||||
|
description: 加样精度 (g)
|
||||||
|
required: []
|
||||||
|
type: object
|
||||||
|
data:
|
||||||
|
properties:
|
||||||
|
status:
|
||||||
|
type: string
|
||||||
|
current_reagent:
|
||||||
|
type: string
|
||||||
|
dispensed_amount:
|
||||||
|
type: number
|
||||||
|
total_operations:
|
||||||
|
type: integer
|
||||||
|
required:
|
||||||
|
- status
|
||||||
|
- current_reagent
|
||||||
|
- dispensed_amount
|
||||||
|
- total_operations
|
||||||
|
type: object
|
||||||
|
|||||||
15
unilabos_msgs/action/AddSolid.action
Normal file
15
unilabos_msgs/action/AddSolid.action
Normal file
@@ -0,0 +1,15 @@
|
|||||||
|
# Goal - 固体加样操作的目标参数
|
||||||
|
string vessel # 目标容器(必需)
|
||||||
|
string reagent # 试剂名称(必需)
|
||||||
|
string mass # 质量字符串(如 "2.9 g",可选)
|
||||||
|
string mol # 摩尔数字符串(如 "0.12 mol",可选)
|
||||||
|
string purpose # 添加目的(可选)
|
||||||
|
---
|
||||||
|
# Result - 操作结果
|
||||||
|
bool success # 操作是否成功
|
||||||
|
string message # 结果消息
|
||||||
|
string return_info # 返回信息
|
||||||
|
---
|
||||||
|
# Feedback - 实时反馈
|
||||||
|
string current_status # 当前状态描述
|
||||||
|
float64 progress # 进度百分比 (0-100)
|
||||||
Reference in New Issue
Block a user