Update graphio together with workstation design.

fix(reaction_station): 为步骤参数添加Value字段传个BY后端

fix(bioyond/warehouses): 修正仓库尺寸和物品排列参数

调整仓库的x轴和z轴物品数量以及物品尺寸参数，使其符合4x1x4的规格要求

fix warehouse serialize/deserialize

fix bioyond converter

fix itemized_carrier.unassign_child_resource

allow not-loaded MSG in registry

add layout serializer & converter

warehouseuse A1-D4; add warehouse layout

fix(graphio): 修正bioyond到plr资源转换中的坐标计算错误

Fix resource assignment and type mapping issues

Corrects resource assignment in ItemizedCarrier by using the correct spot key from _ordering. Updates graphio to use 'typeName' instead of 'name' for type mapping in resource_bioyond_to_plr. Renames DummyWorkstation to BioyondWorkstation in workstation_http_service for clarity.

unilabos/resources/bioyond/warehouses.py

@@ -5,15 +5,15 @@ def bioyond_warehouse_1x4x4(name: str) -> WareHouse:
     """创建BioYond 4x1x4仓库"""
     return warehouse_factory(
         name=name,
-        num_items_x=1,
+        num_items_x=4,
         num_items_y=4,
-        num_items_z=4,
+        num_items_z=1,
         dx=10.0,
         dy=10.0,
         dz=10.0,
-        item_dx=137.0,
-        item_dy=96.0,
-        item_dz=120.0,
+        item_dx=147.0,
+        item_dy=106.0,
+        item_dz=130.0,
         category="warehouse",
     )
 

unilabos/resources/graphio.py

@@ -639,25 +639,24 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
 
         # 处理子物料（detail）
         if material.get("detail") and len(material["detail"]) > 0:
+            for bottle in reversed(plr_material.children):
+                plr_material.unassign_child_resource(bottle)
             child_ids = []
             for detail in material["detail"]:
                 number = (
                     (detail.get("z", 0) - 1) * plr_material.num_items_x * plr_material.num_items_y
-                    + (detail.get("x", 0) - 1) * plr_material.num_items_x
-                    + (detail.get("y", 0) - 1)
+                    + (detail.get("y", 0) - 1) * plr_material.num_items_y
+                    + (detail.get("x", 0) - 1)
                 )
-                bottle = plr_material[number]
-                if detail["name"] in type_mapping:
-                    # plr_material.unassign_child_resource(bottle)
-                    plr_material.sites[number] = None
-                    plr_material[number] = initialize_resource(
-                        {"name": f'{detail["name"]}_{number}', "class": type_mapping[detail["name"]][0]}, resource_type=ResourcePLR
+                typeName = detail.get("typeName", detail.get("name", ""))
+                if typeName in type_mapping:
+                    bottle = plr_material[number] = initialize_resource(
+                        {"name": f'{detail["name"]}_{number}', "class": type_mapping[typeName][0]}, resource_type=ResourcePLR
                     )
-                else:
                     bottle.tracker.liquids = [
                         (detail["name"], float(detail.get("quantity", 0)) if detail.get("quantity") else 0)
                     ]
-                bottle.code = detail.get("code", "")
+                    bottle.code = detail.get("code", "")
         else:
             bottle = plr_material[0] if plr_material.capacity > 0 else plr_material
             bottle.tracker.liquids = [

unilabos/resources/itemized_carrier.py

@@ -74,6 +74,7 @@ class ItemizedCarrier(ResourcePLR):
     num_items_x: int = 0,
     num_items_y: int = 0,
     num_items_z: int = 0,
+    layout: str = "x-y",
     sites: Optional[Dict[Union[int, str], Optional[ResourcePLR]]] = None,
     category: Optional[str] = "carrier",
     model: Optional[str] = None,
@@ -88,6 +89,8 @@ class ItemizedCarrier(ResourcePLR):
     )
     self.num_items = len(sites)
     self.num_items_x, self.num_items_y, self.num_items_z = num_items_x, num_items_y, num_items_z
+    self.layout = "z-y" if self.num_items_z > 1 and self.num_items_x == 1 else "x-z" if self.num_items_z > 1 and self.num_items_y == 1 else "x-y"
+
     if isinstance(sites, dict):
       sites = sites or {}
       self.sites: List[Optional[ResourcePLR]] = list(sites.values())
@@ -150,7 +153,7 @@ class ItemizedCarrier(ResourcePLR):
   def assign_resource_to_site(self, resource: ResourcePLR, spot: int):
     if self.sites[spot] is not None and not isinstance(self.sites[spot], ResourceHolder):
       raise ValueError(f"spot {spot} already has a resource, {resource}")
-    self.assign_child_resource(resource, location=self.child_locations.get(str(spot)), spot=spot)
+    self.assign_child_resource(resource, location=self.child_locations.get(list(self._ordering.keys())[spot]), spot=spot)
 
   def unassign_child_resource(self, resource: ResourcePLR):
     found = False
@@ -161,8 +164,9 @@ class ItemizedCarrier(ResourcePLR):
         break
     if not found:
       raise ValueError(f"Resource {resource} is not assigned to this carrier")
-    if hasattr(resource, "unassign"):
-      resource.unassign()
+    super().unassign_child_resource(resource)
+    # if hasattr(resource, "unassign"):
+    #   resource.unassign()
 
   def get_child_identifier(self, child: ResourcePLR):
     """Get the identifier information for a given child resource.
@@ -403,6 +407,7 @@ class ItemizedCarrier(ResourcePLR):
       "num_items_x": self.num_items_x,
       "num_items_y": self.num_items_y,
       "num_items_z": self.num_items_z,
+      "layout": self.layout,
       "sites": [{
         "label": str(identifier),
         "visible": True if self[identifier] is not None else False,

unilabos/resources/warehouse.py

@@ -5,10 +5,13 @@ from pylabrobot.resources.carrier import ResourceHolder, create_homogeneous_reso
 from unilabos.resources.itemized_carrier import ItemizedCarrier, ResourcePLR
 
 
+LETTERS = "ABCDEFGHIJKLMNOPQRSTUVWXYZ"
+
+
 def warehouse_factory(
     name: str,
-    num_items_x: int = 4,
-    num_items_y: int = 1,
+    num_items_x: int = 1,
+    num_items_y: int = 4,
     num_items_z: int = 4,
     dx: float = 137.0,
     dy: float = 96.0,
@@ -33,13 +36,16 @@ def warehouse_factory(
                 locations.append(Coordinate(x, y, z))
     if removed_positions:
         locations = [loc for i, loc in enumerate(locations) if i not in removed_positions]
-    sites = create_homogeneous_resources(
+    _sites = create_homogeneous_resources(
         klass=ResourceHolder,
         locations=locations,
         resource_size_x=127.0,
         resource_size_y=86.0,
         name_prefix=name,
     )
+    len_x, len_y = (num_items_x, num_items_y) if num_items_z == 1 else (num_items_y, num_items_z) if num_items_x == 1 else (num_items_x, num_items_z)
+    keys = [f"{LETTERS[j]}{i + 1}" for i in range(len_x) for j in range(len_y)]
+    sites = {i: site for i, site in zip(keys, _sites.values())}
     
     return WareHouse(
         name=name,
@@ -68,6 +74,7 @@ class WareHouse(ItemizedCarrier):
         num_items_x: int,
         num_items_y: int,
         num_items_z: int,
+        layout: str = "x-y",
         sites: Optional[Dict[Union[int, str], Optional[ResourcePLR]]] = None,
         category: str = "warehouse",
         model: Optional[str] = None,
@@ -83,6 +90,7 @@ class WareHouse(ItemizedCarrier):
             num_items_x=num_items_x,
             num_items_y=num_items_y,
             num_items_z=num_items_z,
+            layout=layout,
             sites=sites,
             category=category,
             model=model,