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Update work_station.yaml (#60)
* Update work_station.yaml * Checklist里面有XDL跟protocol之间没对齐的问题，工作量有点大找时间写完
This commit is contained in:
Kongchang Feng
GitHub
@@ -40,4 +40,183 @@
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AdjustPH 写完了 <AdjustPH pH="8.0" reagent="hydrochloric acid" vessel="main_reactor"/>
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Recrystallize 写完了 <Recrystallize ratio="?" solvent1="dichloromethane" solvent2="methanol" vessel="filter" volume="?"/>
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TakeSample <TakeSample id="a" vessel="rotavap"/>
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Hydrogenate <Hydrogenate temp="45 °C" time="?" vessel="main_reactor"/>
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Hydrogenate <Hydrogenate temp="45 °C" time="?" vessel="main_reactor"/>
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4. 参数对齐
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class PumpTransferProtocol(BaseModel):
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from_vessel: str
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to_vessel: str
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volume: float
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amount: str = ""
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time: float = 0
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viscous: bool = False
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rinsing_solvent: str = "air" <Transfer from_vessel="main_reactor" to_vessel="rotavap"/>
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rinsing_volume: float = 5000
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rinsing_repeats: int = 2
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solid: bool = False
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flowrate: float = 500
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transfer_flowrate: float = 2500
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class SeparateProtocol(BaseModel):
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purpose: str
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product_phase: str
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from_vessel: str
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separation_vessel: str
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to_vessel: str
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waste_phase_to_vessel: str
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solvent: str
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solvent_volume: float <Separate product_phase="bottom" purpose="wash" solvent="water" vessel="separator" volume="?"/>
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through: str
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repeats: int
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stir_time: float
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stir_speed: float
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settling_time: float
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class EvaporateProtocol(BaseModel):
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vessel: str
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pressure: float
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temp: float <Evaporate solvent="ethanol" vessel="rotavap"/>
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time: float
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stir_speed: float
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class EvacuateAndRefillProtocol(BaseModel):
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vessel: str
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gas: str <EvacuateAndRefill gas="nitrogen" vessel="main_reactor"/>
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repeats: int
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class AddProtocol(BaseModel):
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vessel: str
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reagent: str
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volume: float
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mass: float
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amount: str
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time: float
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stir: bool
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stir_speed: float <Add reagent="ethanol" vessel="main_reactor" volume="2.7 mL"/>
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viscous: bool
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purpose: str
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class CentrifugeProtocol(BaseModel):
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vessel: str
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speed: float
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time: float 自创的
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temp: float
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class FilterProtocol(BaseModel):
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vessel: str
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filtrate_vessel: str
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stir: bool <Filter vessel="filter"/>
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stir_speed: float
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temp: float
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continue_heatchill: bool
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volume: float
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class HeatChillProtocol(BaseModel):
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vessel: str
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temp: float
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time: float <HeatChill pressure="1 mbar" temp_spec="room temperature" time="?" vessel="main_reactor"/>
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<HeatChill temp_spec="room temperature" time_spec="overnight" vessel="main_reactor"/>
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stir: bool
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stir_speed: float
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purpose: str
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class HeatChillStartProtocol(BaseModel):
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vessel: str
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temp: float 疑似没有
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purpose: str
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class HeatChillStopProtocol(BaseModel):
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vessel: str 疑似没有
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class StirProtocol(BaseModel):
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stir_time: float
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stir_speed: float <Stir time="0.5 h" vessel="main_reactor"/>
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settling_time: float
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class StartStirProtocol(BaseModel):
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vessel: str
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stir_speed: float 疑似没有
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purpose: str
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class StopStirProtocol(BaseModel):
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vessel: str 疑似没有
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class TransferProtocol(BaseModel):
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from_vessel: str
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to_vessel: str
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volume: float
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amount: str = ""
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time: float = 0
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viscous: bool = False <Transfer from_vessel="main_reactor" to_vessel="rotavap"/>
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rinsing_solvent: str = ""
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rinsing_volume: float = 0.0
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rinsing_repeats: int = 0
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solid: bool = False
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class CleanVesselProtocol(BaseModel):
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vessel: str
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solvent: str
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volume: float
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temp: float
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repeats: int = 1 <CleanVessel vessel="centrifuge"/>
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class DissolveProtocol(BaseModel):
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vessel: str
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solvent: str
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volume: float <Dissolve mass="2.9 g" mol="0.12 mol" reagent="magnesium" vessel="main_reactor"/>
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amount: str = ""
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temp: float = 25.0
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time: float = 0.0
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stir_speed: float = 0.0
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class FilterThroughProtocol(BaseModel):
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from_vessel: str
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to_vessel: str
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filter_through: str
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eluting_solvent: str = ""
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eluting_volume: float = 0.0 疑似没有
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eluting_repeats: int = 0
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residence_time: float = 0.0
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class RunColumnProtocol(BaseModel):
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from_vessel: str
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to_vessel: str <RunColumn Rf="?" column="column" from_vessel="rotavap" pct1="40 %" pct2="50 %" solvent1="ethyl acetate" solvent2="hexane" to_vessel="rotavap"/>
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column: str
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class WashSolidProtocol(BaseModel):
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vessel: str
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solvent: str
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volume: float
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filtrate_vessel: str = ""
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temp: float = 25.0 <WashSolid filtrate_vessel="rotavap" solvent="formic acid" vessel="main_reactor" volume="?"/>
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stir: bool = False
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stir_speed: float = 0.0
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time: float = 0.0
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repeats: int = 1
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class AdjustPHProtocol(BaseModel):
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vessel: str = Field(..., description="目标容器")
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ph_value: float = Field(..., description="目标pH值") # 改为 ph_value
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reagent: str = Field(..., description="酸碱试剂名称")
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# 移除其他可选参数，使用默认值 <新写的，没问题>
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class ResetHandlingProtocol(BaseModel):
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solvent: str = Field(..., description="溶剂名称") <新写的，没问题>
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class DryProtocol(BaseModel):
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compound: str = Field(..., description="化合物名称") <新写的，没问题>
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vessel: str = Field(..., description="目标容器")
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class RecrystallizeProtocol(BaseModel):
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ratio: str = Field(..., description="溶剂比例（如 '1:1', '3:7'）")
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solvent1: str = Field(..., description="第一种溶剂名称") <新写的，没问题>
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solvent2: str = Field(..., description="第二种溶剂名称")
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vessel: str = Field(..., description="目标容器")
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volume: float = Field(..., description="总体积 (mL)")
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class HydrogenateProtocol(BaseModel):
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temp: str = Field(..., description="反应温度（如 '45 °C'）")
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time: str = Field(..., description="反应时间（如 '2 h'）") <新写的，没问题>
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vessel: str = Field(..., description="反应容器")
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@@ -2355,6 +2355,381 @@ workstation:
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title: initialize_device参数
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type: object
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type: UniLabJsonCommand
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AdjustPHProtocol:
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feedback: {}
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goal:
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vessel: vessel
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ph_value: ph_value
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reagent: reagent
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goal_default:
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vessel: ''
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ph_value: 7.0
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reagent: ''
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handles:
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input:
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- data_key: vessel
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data_source: handle
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data_type: resource
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handler_key: Vessel
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label: Vessel
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- data_key: reagent
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data_source: handle
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data_type: resource
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handler_key: reagent
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label: Reagent
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output:
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- data_key: vessel
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data_source: executor
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data_type: resource
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handler_key: VesselOut
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label: Vessel
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result: {}
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schema:
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description: ROS Action AdjustPH 的 JSON Schema
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properties:
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feedback:
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description: Action 反馈 - 执行过程中从服务器发送到客户端
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properties:
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status:
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type: string
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progress:
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type: number
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required:
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- status
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- progress
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title: AdjustPH_Feedback
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type: object
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goal:
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description: Action 目标 - 从客户端发送到服务器
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properties:
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vessel:
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type: string
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ph_value:
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type: number
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reagent:
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type: string
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required:
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- vessel
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- ph_value
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- reagent
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title: AdjustPH_Goal
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type: object
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result:
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description: Action 结果 - 完成后从服务器发送到客户端
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properties:
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message:
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type: string
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return_info:
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type: string
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success:
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type: boolean
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required:
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- success
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- message
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- return_info
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title: AdjustPH_Result
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type: object
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required:
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- goal
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title: AdjustPH
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type: object
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type: AdjustPH
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ResetHandlingProtocol:
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feedback: {}
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goal:
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solvent: solvent
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goal_default:
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solvent: ''
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handles:
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input:
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- data_key: solvent
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data_source: handle
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data_type: resource
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handler_key: solvent
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label: Solvent
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output: []
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result: {}
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schema:
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description: ROS Action ResetHandling 的 JSON Schema
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properties:
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feedback:
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description: Action 反馈 - 执行过程中从服务器发送到客户端
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properties:
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status:
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type: string
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progress:
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type: number
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required:
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- status
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- progress
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title: ResetHandling_Feedback
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type: object
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goal:
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description: Action 目标 - 从客户端发送到服务器
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properties:
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solvent:
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type: string
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required:
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- solvent
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title: ResetHandling_Goal
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type: object
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result:
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description: Action 结果 - 完成后从服务器发送到客户端
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properties:
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message:
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type: string
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return_info:
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type: string
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success:
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type: boolean
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required:
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- success
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- message
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- return_info
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title: ResetHandling_Result
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type: object
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required:
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- goal
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title: ResetHandling
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type: object
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type: ResetHandling
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DryProtocol:
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feedback: {}
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goal:
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compound: compound
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vessel: vessel
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goal_default:
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compound: ''
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vessel: ''
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handles:
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input:
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- data_key: vessel
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data_source: handle
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data_type: resource
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handler_key: Vessel
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label: Vessel
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output:
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- data_key: vessel
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data_source: executor
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data_type: resource
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handler_key: VesselOut
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label: Vessel
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result: {}
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schema:
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description: ROS Action Dry 的 JSON Schema
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properties:
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feedback:
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description: Action 反馈 - 执行过程中从服务器发送到客户端
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properties:
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status:
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type: string
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progress:
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type: number
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required:
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- status
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- progress
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title: Dry_Feedback
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type: object
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goal:
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description: Action 目标 - 从客户端发送到服务器
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properties:
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compound:
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type: string
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vessel:
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type: string
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required:
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- compound
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- vessel
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title: Dry_Goal
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type: object
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result:
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description: Action 结果 - 完成后从服务器发送到客户端
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properties:
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message:
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type: string
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return_info:
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type: string
|
||||
success:
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type: boolean
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required:
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- success
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- message
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- return_info
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title: Dry_Result
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type: object
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required:
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- goal
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title: Dry
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type: object
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type: Dry
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HydrogenateProtocol:
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feedback: {}
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goal:
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temp: temp
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time: time
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vessel: vessel
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goal_default:
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temp: ''
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time: ''
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vessel: ''
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handles:
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input:
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- data_key: vessel
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data_source: handle
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data_type: resource
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handler_key: Vessel
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label: Vessel
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output:
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- data_key: vessel
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data_source: executor
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data_type: resource
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handler_key: VesselOut
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label: Vessel
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result: {}
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schema:
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description: ROS Action Hydrogenate 的 JSON Schema
|
||||
properties:
|
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feedback:
|
||||
description: Action 反馈 - 执行过程中从服务器发送到客户端
|
||||
properties:
|
||||
status:
|
||||
type: string
|
||||
progress:
|
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type: number
|
||||
required:
|
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- status
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||||
- progress
|
||||
title: Hydrogenate_Feedback
|
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type: object
|
||||
goal:
|
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description: Action 目标 - 从客户端发送到服务器
|
||||
properties:
|
||||
temp:
|
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type: string
|
||||
time:
|
||||
type: string
|
||||
vessel:
|
||||
type: string
|
||||
required:
|
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- temp
|
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- time
|
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- vessel
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||||
title: Hydrogenate_Goal
|
||||
type: object
|
||||
result:
|
||||
description: Action 结果 - 完成后从服务器发送到客户端
|
||||
properties:
|
||||
message:
|
||||
type: string
|
||||
return_info:
|
||||
type: string
|
||||
success:
|
||||
type: boolean
|
||||
required:
|
||||
- success
|
||||
- message
|
||||
- return_info
|
||||
title: Hydrogenate_Result
|
||||
type: object
|
||||
required:
|
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- goal
|
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title: Hydrogenate
|
||||
type: object
|
||||
type: Hydrogenate
|
||||
RecrystallizeProtocol:
|
||||
feedback: {}
|
||||
goal:
|
||||
ratio: ratio
|
||||
solvent1: solvent1
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||||
solvent2: solvent2
|
||||
vessel: vessel
|
||||
volume: volume
|
||||
goal_default:
|
||||
ratio: ''
|
||||
solvent1: ''
|
||||
solvent2: ''
|
||||
vessel: ''
|
||||
volume: 0.0
|
||||
handles:
|
||||
input:
|
||||
- data_key: vessel
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: Vessel
|
||||
label: Vessel
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||||
- data_key: solvent
|
||||
data_source: handle
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||||
data_type: resource
|
||||
handler_key: solvent1
|
||||
label: Solvent 1
|
||||
- data_key: solvent
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||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: solvent2
|
||||
label: Solvent 2
|
||||
output:
|
||||
- data_key: vessel
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||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: VesselOut
|
||||
label: Vessel
|
||||
result: {}
|
||||
schema:
|
||||
description: ROS Action Recrystallize 的 JSON Schema
|
||||
properties:
|
||||
feedback:
|
||||
description: Action 反馈 - 执行过程中从服务器发送到客户端
|
||||
properties:
|
||||
status:
|
||||
type: string
|
||||
progress:
|
||||
type: number
|
||||
required:
|
||||
- status
|
||||
- progress
|
||||
title: Recrystallize_Feedback
|
||||
type: object
|
||||
goal:
|
||||
description: Action 目标 - 从客户端发送到服务器
|
||||
properties:
|
||||
ratio:
|
||||
type: string
|
||||
solvent1:
|
||||
type: string
|
||||
solvent2:
|
||||
type: string
|
||||
vessel:
|
||||
type: string
|
||||
volume:
|
||||
type: number
|
||||
required:
|
||||
- ratio
|
||||
- solvent1
|
||||
- solvent2
|
||||
- vessel
|
||||
- volume
|
||||
title: Recrystallize_Goal
|
||||
type: object
|
||||
result:
|
||||
description: Action 结果 - 完成后从服务器发送到客户端
|
||||
properties:
|
||||
message:
|
||||
type: string
|
||||
return_info:
|
||||
type: string
|
||||
success:
|
||||
type: boolean
|
||||
required:
|
||||
- success
|
||||
- message
|
||||
- return_info
|
||||
title: Recrystallize_Result
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: Recrystallize
|
||||
type: object
|
||||
type: Recrystallize
|
||||
module: unilabos.ros.nodes.presets.protocol_node:ROS2ProtocolNode
|
||||
status_types: {}
|
||||
type: ros2
|
||||
|
||||
Reference in New Issue
Block a user