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1
.gitignore
vendored
1
.gitignore
vendored
@@ -242,3 +242,4 @@ unilabos/device_mesh/view_robot.rviz
|
||||
**/.certs
|
||||
local_test2.py
|
||||
ros-humble-unilabos-msgs-0.9.13-h6403a04_5.tar.bz2
|
||||
*.bz2
|
||||
|
||||
@@ -49,7 +49,7 @@ conda env update --file unilabos-[YOUR_OS].yml -n environment_name
|
||||
|
||||
# Currently, you need to install the `unilabos_msgs` package
|
||||
# You can download the system-specific package from the Release page
|
||||
conda install ros-humble-unilabos-msgs-0.9.13-xxxxx.tar.bz2
|
||||
conda install ros-humble-unilabos-msgs-0.10.0-xxxxx.tar.bz2
|
||||
|
||||
# Install PyLabRobot and other prerequisites
|
||||
git clone https://github.com/PyLabRobot/pylabrobot plr_repo
|
||||
|
||||
@@ -49,7 +49,7 @@ conda env update --file unilabos-[YOUR_OS].yml -n 环境名
|
||||
|
||||
# 现阶段,需要安装 `unilabos_msgs` 包
|
||||
# 可以前往 Release 页面下载系统对应的包进行安装
|
||||
conda install ros-humble-unilabos-msgs-0.9.13-xxxxx.tar.bz2
|
||||
conda install ros-humble-unilabos-msgs-0.10.0-xxxxx.tar.bz2
|
||||
|
||||
# 安装PyLabRobot等前置
|
||||
git clone https://github.com/PyLabRobot/pylabrobot plr_repo
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
package:
|
||||
name: ros-humble-unilabos-msgs
|
||||
version: 0.9.13
|
||||
version: 0.10.0
|
||||
source:
|
||||
path: ../../unilabos_msgs
|
||||
folder: ros-humble-unilabos-msgs/src/work
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
package:
|
||||
name: unilabos
|
||||
version: "0.9.13"
|
||||
version: "0.10.0"
|
||||
|
||||
source:
|
||||
path: ../..
|
||||
|
||||
2
setup.py
2
setup.py
@@ -4,7 +4,7 @@ package_name = 'unilabos'
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||||
|
||||
setup(
|
||||
name=package_name,
|
||||
version='0.9.13',
|
||||
version='0.10.0',
|
||||
packages=find_packages(),
|
||||
include_package_data=True,
|
||||
install_requires=['setuptools'],
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||||
|
||||
@@ -0,0 +1,70 @@
|
||||
{
|
||||
"nodes": [
|
||||
{
|
||||
"id": "OrganicSynthesisStation",
|
||||
"name": "有机化学流程综合测试工作站",
|
||||
"children": [
|
||||
"heater_1"
|
||||
],
|
||||
"parent": null,
|
||||
"type": "device",
|
||||
"class": "workstation",
|
||||
"position": {
|
||||
"x": 600,
|
||||
"y": 400,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"protocol_type": [
|
||||
"AddProtocol",
|
||||
"TransferProtocol",
|
||||
"StartStirProtocol",
|
||||
"StopStirProtocol",
|
||||
"StirProtocol",
|
||||
"RunColumnProtocol",
|
||||
"CentrifugeProtocol",
|
||||
"FilterProtocol",
|
||||
"CleanVesselProtocol",
|
||||
"DissolveProtocol",
|
||||
"FilterThroughProtocol",
|
||||
"WashSolidProtocol",
|
||||
"SeparateProtocol",
|
||||
"EvaporateProtocol",
|
||||
"HeatChillProtocol",
|
||||
"HeatChillStartProtocol",
|
||||
"HeatChillStopProtocol",
|
||||
"EvacuateAndRefillProtocol",
|
||||
"PumpTransferProtocol",
|
||||
"AdjustPHProtocol",
|
||||
"ResetHandlingProtocol",
|
||||
"DryProtocol",
|
||||
"HydrogenateProtocol",
|
||||
"RecrystallizeProtocol"
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "heater_1",
|
||||
"name": "加热器",
|
||||
"children": [],
|
||||
"parent": "OrganicSynthesisStation",
|
||||
"type": "device",
|
||||
"class": "virtual_heatchill",
|
||||
"position": {
|
||||
"x": 450,
|
||||
"y": 450,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"max_temp": 200.0,
|
||||
"min_temp": -20.0
|
||||
},
|
||||
"data": {
|
||||
"status": "Idle",
|
||||
"current_temp": 25.0
|
||||
}
|
||||
}
|
||||
],
|
||||
"links": []
|
||||
}
|
||||
@@ -21,7 +21,7 @@
|
||||
"timeout": 10.0,
|
||||
"axis": "Right",
|
||||
"channel_num": 1,
|
||||
"setup": false,
|
||||
"setup": true,
|
||||
"debug": false,
|
||||
"simulator": false,
|
||||
"matrix_id": "fd383e6d-2d0e-40b5-9c01-1b2870b1f1b1"
|
||||
|
||||
@@ -18,10 +18,22 @@ def register_devices_and_resources(mqtt_client, lab_registry):
|
||||
mqtt_client.publish_registry(device_info["id"], device_info, False)
|
||||
logger.debug(f"[UniLab Register] 注册设备: {device_info['id']}")
|
||||
|
||||
# 注册资源信息
|
||||
# 注册资源信息 - 使用HTTP方式
|
||||
from unilabos.app.web.client import http_client
|
||||
|
||||
resources_to_register = {}
|
||||
for resource_info in lab_registry.obtain_registry_resource_info():
|
||||
mqtt_client.publish_registry(resource_info["id"], resource_info, False)
|
||||
logger.debug(f"[UniLab Register] 注册资源: {resource_info['id']}")
|
||||
resources_to_register[resource_info["id"]] = resource_info
|
||||
logger.debug(f"[UniLab Register] 准备注册资源: {resource_info['id']}")
|
||||
|
||||
if resources_to_register:
|
||||
start_time = time.time()
|
||||
response = http_client.resource_registry(resources_to_register)
|
||||
cost_time = time.time() - start_time
|
||||
if response.status_code in [200, 201]:
|
||||
logger.info(f"[UniLab Register] 成功通过HTTP注册 {len(resources_to_register)} 个资源 {cost_time}ms")
|
||||
else:
|
||||
logger.error(f"[UniLab Register] HTTP注册资源失败: {response.status_code}, {response.text} {cost_time}ms")
|
||||
|
||||
time.sleep(10)
|
||||
|
||||
@@ -53,11 +65,9 @@ def main():
|
||||
help="是否补全注册表",
|
||||
)
|
||||
args = parser.parse_args()
|
||||
|
||||
load_config_from_file(args.config)
|
||||
# 构建注册表
|
||||
build_registry(args.registry, args.complete_registry)
|
||||
load_config_from_file(args.config)
|
||||
|
||||
from unilabos.app.mq import mqtt_client
|
||||
|
||||
# 连接mqtt
|
||||
@@ -70,4 +80,4 @@ def main():
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
main()
|
||||
main()
|
||||
|
||||
@@ -40,8 +40,9 @@ class HTTPClient:
|
||||
Returns:
|
||||
Response: API响应对象
|
||||
"""
|
||||
database_param = 1 if database_process_later else 0
|
||||
response = requests.post(
|
||||
f"{self.remote_addr}/lab/resource/edge/batch_create/?database_process_later={1 if database_process_later else 0}",
|
||||
f"{self.remote_addr}/lab/resource/edge/batch_create/?database_process_later={database_param}",
|
||||
json=resources,
|
||||
headers={"Authorization": f"lab {self.auth}"},
|
||||
timeout=100,
|
||||
@@ -149,6 +150,26 @@ class HTTPClient:
|
||||
)
|
||||
return response
|
||||
|
||||
def resource_registry(self, registry_data: Dict[str, Any]) -> requests.Response:
|
||||
"""
|
||||
注册资源到服务器
|
||||
|
||||
Args:
|
||||
registry_data: 注册表数据,格式为 {resource_id: resource_info}
|
||||
|
||||
Returns:
|
||||
Response: API响应对象
|
||||
"""
|
||||
response = requests.post(
|
||||
f"{self.remote_addr}/lab/registry/",
|
||||
json=registry_data,
|
||||
headers={"Authorization": f"lab {self.auth}"},
|
||||
timeout=30,
|
||||
)
|
||||
if response.status_code not in [200, 201]:
|
||||
logger.error(f"注册资源失败: {response.status_code}, {response.text}")
|
||||
return response
|
||||
|
||||
|
||||
# 创建默认客户端实例
|
||||
http_client = HTTPClient()
|
||||
|
||||
@@ -104,6 +104,8 @@ class LiquidHandlerMiddleware(LiquidHandler):
|
||||
offsets: Optional[List[Coordinate]] = None,
|
||||
**backend_kwargs,
|
||||
):
|
||||
print('222'*200)
|
||||
print(tip_spots)
|
||||
if self._simulator:
|
||||
return await self._simulate_handler.pick_up_tips(tip_spots, use_channels, offsets, **backend_kwargs)
|
||||
return await super().pick_up_tips(tip_spots, use_channels, offsets, **backend_kwargs)
|
||||
@@ -533,7 +535,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
"""Extended LiquidHandler with additional operations."""
|
||||
support_touch_tip = True
|
||||
|
||||
def __init__(self, backend: LiquidHandlerBackend, deck: Deck, simulator: bool, channel_num:int = 8):
|
||||
def __init__(self, backend: LiquidHandlerBackend, deck: Deck, simulator: bool=False, channel_num:int = 8):
|
||||
"""Initialize a LiquidHandler.
|
||||
|
||||
Args:
|
||||
@@ -620,12 +622,10 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
spread=spread,
|
||||
)
|
||||
await self.discard_tips()
|
||||
elif len(use_channels) == 8 and self.backend.num_channels == 8:
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
|
||||
elif len(use_channels) == 8 and self.backend.num_channels == 8:
|
||||
|
||||
|
||||
# 对于8个的情况,需要判断此时任务是不是能被8通道移液站来成功处理
|
||||
if len(sources) % 8 != 0:
|
||||
raise ValueError(f"Length of `sources` {len(sources)} must be a multiple of 8 for 8-channel mode.")
|
||||
@@ -633,7 +633,6 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
# 8个8个来取任务序列
|
||||
|
||||
for i in range(0, len(sources), 8):
|
||||
# 取出8个任务
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
@@ -762,19 +761,16 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
await self.touch_tip(targets[_])
|
||||
await self.discard_tips()
|
||||
elif len(use_channels) == 8:
|
||||
|
||||
elif len(use_channels) == 8:
|
||||
# 对于8个的情况,需要判断此时任务是不是能被8通道移液站来成功处理
|
||||
if len(targets) % 8 != 0:
|
||||
raise ValueError(f"Length of `targets` {len(targets)} must be a multiple of 8 for 8-channel mode.")
|
||||
|
||||
# 8个8个来取任务序列
|
||||
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
for i in range(0, len(targets), 8):
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
current_targets = targets[i:i + 8]
|
||||
current_reagent_sources = reagent_sources[i:i + 8]
|
||||
current_asp_vols = asp_vols[i:i + 8]
|
||||
@@ -824,7 +820,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
await self.touch_tip(current_targets)
|
||||
await self.discard_tips()
|
||||
await self.discard_tips()
|
||||
|
||||
|
||||
# except Exception as e:
|
||||
|
||||
@@ -455,7 +455,7 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
# print(plate_indexes[0])
|
||||
PlateNo = plate_indexes[0] + 1
|
||||
hole_col = tip_columns[0] + 1
|
||||
|
||||
hole_row = 1
|
||||
if self._num_channels == 1:
|
||||
hole_row = tipspot_index % 8 + 1
|
||||
|
||||
@@ -476,7 +476,7 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
dosage=0,
|
||||
plate_no=PlateNo,
|
||||
is_whole_plate=False,
|
||||
hole_row=3,
|
||||
hole_row=1,
|
||||
hole_col=3,
|
||||
blending_times=0,
|
||||
balance_height=0,
|
||||
@@ -974,156 +974,9 @@ if __name__ == "__main__":
|
||||
# # 2. backend需要支持num channel为1的情况
|
||||
# # 3. 设计一个单点动作流程,可以跑
|
||||
# # 4.
|
||||
# deck = PRCXI9300Deck(name="PRCXI_Deck", size_x=100, size_y=100, size_z=100)
|
||||
# plate1 = PRCXI9300Container(name="rackT1", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict())
|
||||
# plate1.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "80652665f6a54402b2408d50b40398df",
|
||||
# "Co#de": "ZX-001-1000",
|
||||
# "Name": "1000μL Tip头",
|
||||
# "SummaryName": "1000μL Tip头",
|
||||
# "PipetteHeight": 100,
|
||||
# "materialEnum": 1
|
||||
# }
|
||||
# })
|
||||
|
||||
# plate2 = PRCXI9300Container(name="plateT2", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict())
|
||||
# plate2.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "57b1e4711e9e4a32b529f3132fc5931f",
|
||||
# }
|
||||
# })
|
||||
|
||||
# plate3 = PRCXI9300Container(name="plateT3", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict())
|
||||
# plate3.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "57b1e4711e9e4a32b529f3132fc5931f",
|
||||
# }
|
||||
# })
|
||||
|
||||
# plate4 = PRCXI9300Container(name="rackT4", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict())
|
||||
# plate4.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "80652665f6a54402b2408d50b40398df",
|
||||
# "Code": "ZX-001-1000",
|
||||
# "Name": "1000μL Tip头",
|
||||
# "SummaryName": "1000μL Tip头",
|
||||
# "PipetteHeight": 100,
|
||||
# "materialEnum": 1
|
||||
# }
|
||||
# })
|
||||
|
||||
# plate5 = PRCXI9300Container(name="plateT5", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict())
|
||||
# plate5.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "57b1e4711e9e4a32b529f3132fc5931f",
|
||||
# }
|
||||
# })
|
||||
# plate6 = PRCXI9300Trash(name="trash", size_x=50, size_y=500, size_z=10, category="trash")
|
||||
# plate6.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "57b1e4711e9e4a32b529f3132fc5931f",
|
||||
# }
|
||||
# })
|
||||
|
||||
# from pylabrobot.resources.opentrons.tip_racks import tipone_96_tiprack_200ul
|
||||
# from pylabrobot.resources.opentrons.plates import corning_96_wellplate_360ul_flat
|
||||
|
||||
# tip_rack = tipone_96_tiprack_200ul("TipRack")
|
||||
# well_containers = corning_96_wellplate_360ul_flat("Plate")
|
||||
# # from pprint import pprint
|
||||
# # pprint(well_containers.children)
|
||||
# plate1.assign_child_resource(tip_rack, location=Coordinate(0, 0, 0))
|
||||
# plate2.assign_child_resource(well_containers, location=Coordinate(0, 0, 0))
|
||||
|
||||
# deck.assign_child_resource(plate1, location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(plate2, location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(plate3, location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(plate4, location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(plate5, location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(plate6, location=Coordinate(0, 0, 0))
|
||||
|
||||
# print(plate2)
|
||||
# # plate_2_liquids = [[(None, 500)]]*96
|
||||
|
||||
# # plate2.set_well_liquids(plate_2_liquids)
|
||||
|
||||
|
||||
# handler = PRCXI9300Handler(deck=deck, host="192.168.3.9", port=9999, timeout=10.0, setup=False, debug=True, matrix_id="fd383e6d-2d0e-40b5-9c01-1b2870b1f1b1")
|
||||
# handler.set_tiprack([tip_rack]) # Set the tip rack for the handler
|
||||
# asyncio.run(handler.setup()) # Initialize the handler and setup the connection
|
||||
# from pylabrobot.resources import set_volume_tracking
|
||||
|
||||
# # from pylabrobot.resources import set_tip_tracking
|
||||
# set_volume_tracking(enabled=True)
|
||||
# plate2.set_well_liquids([("Water", 100)] * plate2.num_items)
|
||||
# asyncio.run(handler.create_protocol(protocol_name="Test Protocol")) # Initialize the backend and setup the connection
|
||||
# # asyncio.run(handler.pick_up_tips(tip_rack.children[:8],[0,1,2,3,4,5,6,7]))
|
||||
|
||||
# # asyncio.run(handler.aspirate(well_containers.children[:8],[50]*8, [0,1,2,3,4,5,6,7]))
|
||||
# # asyncio.run(handler.dispense(well_containers.children[:8],[50]*8,[0,1,2,3,4,5,6,7]))
|
||||
# # asyncio.run(handler.drop_tips(tip_rack.children[8:16],[0,1,2,3,4,5,6,7]))
|
||||
# # asyncio.run(handler.discard_tips())
|
||||
# # asyncio.run(handler.mix(well_containers.children[:8
|
||||
# # ], mix_time=3, mix_vol=50, height_to_bottom=0.5, offsets=Coordinate(0, 0, 0), mix_rate=100))
|
||||
# #print(json.dumps(handler._unilabos_backend.steps_todo_list, indent=2)) # Print matrix info
|
||||
# asyncio.run(handler.add_liquid(
|
||||
# asp_vols=[100]*16,
|
||||
# dis_vols=[100]*16,
|
||||
# reagent_sources=well_containers.children[-16:],
|
||||
# targets=well_containers.children[:16],
|
||||
# use_channels=[0, 1, 2, 3, 4, 5, 6, 7],
|
||||
# flow_rates=[None] * 32,
|
||||
# offsets=[Coordinate(0, 0, 0)] * 32,
|
||||
# liquid_height=[None] * 16,
|
||||
# blow_out_air_volume=[None] * 16,
|
||||
# delays=None,
|
||||
# mix_time=3,
|
||||
# mix_vol=50,
|
||||
# spread="wide",
|
||||
# ))
|
||||
|
||||
# # asyncio.run(handler.remove_liquid(
|
||||
# # vols=[100]*16,
|
||||
# # sources=well_containers.children[-16:],
|
||||
# # waste_liquid=well_containers.children[:16], # 这个有些奇怪,但是好像也只能这么写
|
||||
# # use_channels=[0, 1, 2, 3, 4, 5, 6, 7],
|
||||
# # flow_rates=[None] * 32,
|
||||
# # offsets=[Coordinate(0, 0, 0)] * 32,
|
||||
# # liquid_height=[None] * 32,
|
||||
# # blow_out_air_volume=[None] * 32,
|
||||
# # spread="wide",
|
||||
# # ))
|
||||
# # asyncio.run(handler.transfer_liquid(
|
||||
# # asp_vols=[100]*16,
|
||||
# # dis_vols=[100]*16,
|
||||
# # tip_racks=[tip_rack],
|
||||
# # sources=well_containers.children[-16:],
|
||||
# # targets=well_containers.children[:16],
|
||||
# # use_channels=[0, 1, 2, 3, 4, 5, 6, 7],
|
||||
# # offsets=[Coordinate(0, 0, 0)] * 32,
|
||||
# # asp_flow_rates=[None] * 16,
|
||||
# # dis_flow_rates=[None] * 16,
|
||||
# # liquid_height=[None] * 32,
|
||||
# # blow_out_air_volume=[None] * 32,
|
||||
# # mix_times=3,
|
||||
# # mix_vol=50,
|
||||
# # spread="wide",
|
||||
# # ))
|
||||
# print(json.dumps(handler._unilabos_backend.steps_todo_list, indent=2)) # Print matrix info
|
||||
# # input("pick_up_tips add step")
|
||||
# #asyncio.run(handler.run_protocol()) # Run the protocol
|
||||
# # input("Running protocol...")
|
||||
# # input("Press Enter to continue...") # Wait for user input before proceeding
|
||||
# # print("PRCXI9300Handler initialized with deck and host settings.")
|
||||
|
||||
# Example usage
|
||||
# 1. 用导出的json,给每个T1 T2板子设定相应的物料,如果是孔板和枪头盒,要对应区分
|
||||
# 2. 设计一个单点动作流程,可以跑
|
||||
# 3.
|
||||
deck = PRCXI9300Deck(name="PRCXI_Deck", size_x=100, size_y=100, size_z=100)
|
||||
|
||||
from pylabrobot.resources.opentrons.tip_racks import tipone_96_tiprack_200ul,opentrons_96_tiprack_10ul
|
||||
from pylabrobot.resources.opentrons.tip_racks import opentrons_96_tiprack_300ul,opentrons_96_tiprack_10ul
|
||||
from pylabrobot.resources.opentrons.plates import corning_96_wellplate_360ul_flat, nest_96_wellplate_2ml_deep
|
||||
|
||||
def get_well_container(name: str) -> PRCXI9300Container:
|
||||
@@ -1137,7 +990,7 @@ if __name__ == "__main__":
|
||||
return new_plate
|
||||
|
||||
def get_tip_rack(name: str) -> PRCXI9300Container:
|
||||
tip_racks = opentrons_96_tiprack_10ul("name").serialize()
|
||||
tip_racks = opentrons_96_tiprack_300ul("name").serialize()
|
||||
tip_rack = PRCXI9300Container(name=name, size_x=50, size_y=50, size_z=10, category="tip_rack",
|
||||
ordering=collections.OrderedDict())
|
||||
tip_rack_serialized = tip_rack.serialize()
|
||||
@@ -1146,145 +999,320 @@ if __name__ == "__main__":
|
||||
new_tip_rack: PRCXI9300Container = PRCXI9300Container.deserialize(tip_racks)
|
||||
return new_tip_rack
|
||||
|
||||
plate1 = get_well_container("HPLCPlateT1")
|
||||
plate1 = get_tip_rack("RackT1")
|
||||
plate1.load_state({
|
||||
"Material": {
|
||||
"uuid": "548bbc3df0d4447586f2c19d2c0c0c55",
|
||||
"Code": "HPLC01",
|
||||
"Name": "HPLC料盘"
|
||||
"uuid": "076250742950465b9d6ea29a225dfb00",
|
||||
"Code": "ZX-001-300",
|
||||
"Name": "300μL Tip头"
|
||||
}
|
||||
})
|
||||
|
||||
plate2 = get_well_container("PlateT2")
|
||||
plate2.load_state({
|
||||
"Material": {
|
||||
"uuid": "04211a2dc93547fe9bf6121eac533650",
|
||||
"uuid": "57b1e4711e9e4a32b529f3132fc5931f",
|
||||
"Code": "ZX-019-2.2",
|
||||
"Name": "96深孔板"
|
||||
}
|
||||
})
|
||||
plate3 = get_well_container("PlateT3")
|
||||
|
||||
|
||||
plate3 = PRCXI9300Trash("trash", size_x=50, size_y=100, size_z=10, category="trash")
|
||||
plate3.load_state({
|
||||
"Material": {
|
||||
"uuid": "04211a2dc93547fe9bf6121eac533650",
|
||||
}
|
||||
})
|
||||
trash = PRCXI9300Trash(name="trash", size_x=50, size_y=50, size_z=10, category="trash")
|
||||
trash.load_state({
|
||||
"Material": {
|
||||
"uuid": "730067cf07ae43849ddf4034299030e9"
|
||||
}
|
||||
})
|
||||
|
||||
plate4 = get_tip_rack("RackT4")
|
||||
plate4.load_state({
|
||||
"Material": {
|
||||
"uuid": "076250742950465b9d6ea29a225dfb00",
|
||||
"Code": "ZX-001-300",
|
||||
"Name": "300μL Tip头"
|
||||
}
|
||||
})
|
||||
|
||||
plate5 = get_well_container("PlateT5")
|
||||
plate5.load_state({
|
||||
"Material": {
|
||||
"uuid": "04211a2dc93547fe9bf6121eac533650",
|
||||
"uuid": "57b1e4711e9e4a32b529f3132fc5931f",
|
||||
"Code": "ZX-019-2.2",
|
||||
"Name": "96深孔板"
|
||||
}
|
||||
})
|
||||
plate6 = get_well_container("PlateT6")
|
||||
plate6.load_state({
|
||||
"Material": {
|
||||
"uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
}
|
||||
})
|
||||
plate7 = PRCXI9300Container(name="plateT7", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict())
|
||||
plate7.load_state({
|
||||
"Material": {
|
||||
"uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
}
|
||||
})
|
||||
plate8 = get_tip_rack("RackT8")
|
||||
plate8.load_state({
|
||||
"Material": {
|
||||
"uuid": "068b3815e36b4a72a59bae017011b29f",
|
||||
"Code": "ZX-001-10+",
|
||||
"Name": "10μL加长 Tip头"
|
||||
}
|
||||
})
|
||||
plate9 = get_well_container("PlateT9")
|
||||
plate9.load_state({
|
||||
"Material": {
|
||||
"uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
}
|
||||
})
|
||||
plate10 = get_well_container("PlateT10")
|
||||
plate10.load_state({
|
||||
"Material": {
|
||||
"uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
}
|
||||
})
|
||||
plate11 = get_well_container("PlateT11")
|
||||
plate11.load_state({
|
||||
"Material": {
|
||||
"uuid": "57b1e4711e9e4a32b529f3132fc5931f",
|
||||
"Code": "ZX-019-2.2",
|
||||
"Name": "96深孔板"
|
||||
}
|
||||
})
|
||||
plate12 = get_well_container("PlateT12")
|
||||
plate12.load_state({
|
||||
"Material": {
|
||||
"uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
}
|
||||
})
|
||||
plate13 = get_well_container("PlateT13")
|
||||
plate13.load_state({
|
||||
"Material": {
|
||||
"uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
}
|
||||
})
|
||||
|
||||
# container_for_nothing = PRCXI9300Container(name="container_for_nothing", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict())
|
||||
|
||||
deck.assign_child_resource(plate1, location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing1", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing2", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(trash, location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing3", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing4", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(plate8, location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing5", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing6", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(plate11, location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing7", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing8", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(plate2, location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(plate3, location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(plate4, location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(plate5, location=Coordinate(0, 0, 0))
|
||||
deck.assign_child_resource(plate6, location=Coordinate(0, 0, 0))
|
||||
|
||||
handler = PRCXI9300Handler(deck=deck, host="10.181.102.13", port=9999,
|
||||
# print(plate2)
|
||||
plate_2_liquids = [[('water', 500)]]*96
|
||||
plate2.set_well_liquids(plate_2_liquids)
|
||||
|
||||
handler = PRCXI9300Handler(deck=deck, host="10.181.214.132", port=9999,
|
||||
timeout=10.0, setup=False, debug=False,
|
||||
matrix_id="fd383e6d-2d0e-40b5-9c01-1b2870b1f1b1",
|
||||
channel_num=1, axis="Right") # Initialize the handler with the deck and host settings
|
||||
matrix_id="71593",
|
||||
channel_num=8, axis="Left") # Initialize the handler with the deck and host settings
|
||||
|
||||
handler.set_tiprack([plate8]) # Set the tip rack for the handler
|
||||
|
||||
handler.set_tiprack([plate1])
|
||||
|
||||
asyncio.run(handler.setup()) # Initialize the handler and setup the connection
|
||||
from pylabrobot.resources import set_volume_tracking
|
||||
# from pylabrobot.resources import set_tip_tracking
|
||||
set_volume_tracking(enabled=True)
|
||||
|
||||
plate11.set_well_liquids([("Water", 100) if (i % 8 == 0 and i // 8 < 6) else (None, 100) for i in range(96)]) # Set liquids for every 8 wells in plate8
|
||||
|
||||
from unilabos.resources.graphio import *
|
||||
|
||||
A = tree_to_list([resource_plr_to_ulab(deck)])
|
||||
with open("deck.json", "w", encoding="utf-8") as f:
|
||||
json.dump(A, f, indent=4, ensure_ascii=False)
|
||||
|
||||
print(plate11.get_well(0).tracker.get_used_volume())
|
||||
asyncio.run(handler.create_protocol(protocol_name="Test Protocol")) # Initialize the backend and setup the connection
|
||||
# asyncio.run(handler.pick_up_tips(plate1.children[:8],[0,1,2,3,4,5,6,7]))
|
||||
|
||||
# asyncio.run(handler.pick_up_tips([plate8.children[8]],[0]))
|
||||
# print(plate8.children[8])
|
||||
# # asyncio.run(handler.run_protocol())
|
||||
# asyncio.run(handler.aspirate([plate11.children[0]],[10], [0]))
|
||||
# print(plate11.children[0])
|
||||
# # asyncio.run(handler.run_protocol())
|
||||
# asyncio.run(handler.dispense([plate1.children[0]],[10],[0]))
|
||||
# print(plate1.children[0])
|
||||
# # asyncio.run(handler.run_protocol())
|
||||
# asyncio.run(handler.mix([plate1.children[0]], mix_time=3, mix_vol=5, height_to_bottom=0.5, offsets=Coordinate(0, 0, 0), mix_rate=100))
|
||||
# print(plate1.children[0])
|
||||
# asyncio.run(handler.aspirate(plate2.children[:8],[50]*8, [0,1,2,3,4,5,6,7]))
|
||||
# asyncio.run(handler.dispense(plate5.children[:8],[50]*8,[0,1,2,3,4,5,6,7]))
|
||||
# # # asyncio.run(handler.drop_tips(tip_rack.children[8:16],[0,1,2,3,4,5,6,7]))
|
||||
# asyncio.run(handler.discard_tips())
|
||||
|
||||
# asyncio.run(handler.mix(well_containers.children[:8
|
||||
# ], mix_time=3, mix_vol=50, height_to_bottom=0.5, offsets=Coordinate(0, 0, 0), mix_rate=100))
|
||||
# #print(json.dumps(handler._unilabos_backend.steps_todo_list, indent=2)) # Print matrix info
|
||||
# asyncio.run(handler.add_liquid(
|
||||
# asp_vols=[100]*16,
|
||||
# dis_vols=[100]*16,
|
||||
# reagent_sources=plate2.children[:16],
|
||||
# targets=plate5.children[:16],
|
||||
# use_channels=[0, 1, 2, 3, 4, 5, 6, 7],
|
||||
# flow_rates=[None] * 32,
|
||||
# offsets=[Coordinate(0, 0, 0)] * 32,
|
||||
# liquid_height=[None] * 16,
|
||||
# blow_out_air_volume=[None] * 16,
|
||||
# delays=None,
|
||||
# mix_time=3,
|
||||
# mix_vol=50,
|
||||
# spread="wide",
|
||||
# ))
|
||||
|
||||
# asyncio.run(handler.remove_liquid(
|
||||
# vols=[100]*16,
|
||||
# sources=plate2.children[-16:],
|
||||
# waste_liquid=plate5.children[:16], # 这个有些奇怪,但是好像也只能这么写
|
||||
# use_channels=[0, 1, 2, 3, 4, 5, 6, 7],
|
||||
# flow_rates=[None] * 32,
|
||||
# offsets=[Coordinate(0, 0, 0)] * 32,
|
||||
# liquid_height=[None] * 32,
|
||||
# blow_out_air_volume=[None] * 32,
|
||||
# spread="wide",
|
||||
# ))
|
||||
asyncio.run(handler.transfer_liquid(
|
||||
asp_vols=[100]*16,
|
||||
dis_vols=[100]*16,
|
||||
tip_racks=[plate1],
|
||||
sources=plate2.children[-16:],
|
||||
targets=plate5.children[:16],
|
||||
use_channels=[0, 1, 2, 3, 4, 5, 6, 7],
|
||||
offsets=[Coordinate(0, 0, 0)] * 32,
|
||||
asp_flow_rates=[None] * 16,
|
||||
dis_flow_rates=[None] * 16,
|
||||
liquid_height=[None] * 32,
|
||||
blow_out_air_volume=[None] * 32,
|
||||
mix_times=3,
|
||||
mix_vol=50,
|
||||
spread="wide",
|
||||
))
|
||||
print(json.dumps(handler._unilabos_backend.steps_todo_list, indent=2)) # Print matrix info
|
||||
# # input("pick_up_tips add step")
|
||||
asyncio.run(handler.run_protocol()) # Run the protocol
|
||||
# # input("Running protocol...")
|
||||
# # input("Press Enter to continue...") # Wait for user input before proceeding
|
||||
# # print("PRCXI9300Handler initialized with deck and host settings.")
|
||||
|
||||
# Example usage
|
||||
# 1. 用导出的json,给每个T1 T2板子设定相应的物料,如果是孔板和枪头盒,要对应区分
|
||||
# 2. 设计一个单点动作流程,可以跑
|
||||
# 3.
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# deck = PRCXI9300Deck(name="PRCXI_Deck", size_x=100, size_y=100, size_z=100)
|
||||
|
||||
# from pylabrobot.resources.opentrons.tip_racks import tipone_96_tiprack_200ul,opentrons_96_tiprack_10ul
|
||||
# from pylabrobot.resources.opentrons.plates import corning_96_wellplate_360ul_flat, nest_96_wellplate_2ml_deep
|
||||
|
||||
# def get_well_container(name: str) -> PRCXI9300Container:
|
||||
# well_containers = corning_96_wellplate_360ul_flat(name).serialize()
|
||||
# plate = PRCXI9300Container(name=name, size_x=50, size_y=50, size_z=10, category="plate",
|
||||
# ordering=collections.OrderedDict())
|
||||
# plate_serialized = plate.serialize()
|
||||
# plate_serialized["parent_name"] = deck.name
|
||||
# well_containers.update({k: v for k, v in plate_serialized.items() if k not in ["children"]})
|
||||
# new_plate: PRCXI9300Container = PRCXI9300Container.deserialize(well_containers)
|
||||
# return new_plate
|
||||
|
||||
# def get_tip_rack(name: str) -> PRCXI9300Container:
|
||||
# tip_racks = opentrons_96_tiprack_10ul("name").serialize()
|
||||
# tip_rack = PRCXI9300Container(name=name, size_x=50, size_y=50, size_z=10, category="tip_rack",
|
||||
# ordering=collections.OrderedDict())
|
||||
# tip_rack_serialized = tip_rack.serialize()
|
||||
# tip_rack_serialized["parent_name"] = deck.name
|
||||
# tip_racks.update({k: v for k, v in tip_rack_serialized.items() if k not in ["children"]})
|
||||
# new_tip_rack: PRCXI9300Container = PRCXI9300Container.deserialize(tip_racks)
|
||||
# return new_tip_rack
|
||||
|
||||
# plate1 = get_well_container("HPLCPlateT1")
|
||||
# plate1.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "548bbc3df0d4447586f2c19d2c0c0c55",
|
||||
# "Code": "HPLC01",
|
||||
# "Name": "HPLC料盘"
|
||||
# }
|
||||
# })
|
||||
# plate2 = get_well_container("PlateT2")
|
||||
# plate2.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "04211a2dc93547fe9bf6121eac533650",
|
||||
# }
|
||||
# })
|
||||
# plate3 = get_well_container("PlateT3")
|
||||
# plate3.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "04211a2dc93547fe9bf6121eac533650",
|
||||
# }
|
||||
# })
|
||||
# trash = PRCXI9300Trash(name="trash", size_x=50, size_y=50, size_z=10, category="trash")
|
||||
# trash.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "730067cf07ae43849ddf4034299030e9"
|
||||
# }
|
||||
# })
|
||||
# plate5 = get_well_container("PlateT5")
|
||||
# plate5.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "04211a2dc93547fe9bf6121eac533650",
|
||||
# }
|
||||
# })
|
||||
# plate6 = get_well_container("PlateT6")
|
||||
# plate6.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
# }
|
||||
# })
|
||||
# plate7 = PRCXI9300Container(name="plateT7", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict())
|
||||
# plate7.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
# }
|
||||
# })
|
||||
# plate8 = get_tip_rack("RackT8")
|
||||
# plate8.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "068b3815e36b4a72a59bae017011b29f",
|
||||
# "Code": "ZX-001-10+",
|
||||
# "Name": "10μL加长 Tip头"
|
||||
# }
|
||||
# })
|
||||
# plate9 = get_well_container("PlateT9")
|
||||
# plate9.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
# }
|
||||
# })
|
||||
# plate10 = get_well_container("PlateT10")
|
||||
# plate10.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
# }
|
||||
# })
|
||||
# plate11 = get_well_container("PlateT11")
|
||||
# plate11.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "57b1e4711e9e4a32b529f3132fc5931f",
|
||||
# }
|
||||
# })
|
||||
# plate12 = get_well_container("PlateT12")
|
||||
# plate12.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
# }
|
||||
# })
|
||||
# plate13 = get_well_container("PlateT13")
|
||||
# plate13.load_state({
|
||||
# "Material": {
|
||||
# "uuid": "04211a2dc93547fe9bf6121eac533650"
|
||||
# }
|
||||
# })
|
||||
|
||||
# # container_for_nothing = PRCXI9300Container(name="container_for_nothing", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict())
|
||||
|
||||
# deck.assign_child_resource(plate1, location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing1", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing2", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(trash, location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing3", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing4", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(plate8, location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing5", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing6", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(plate11, location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing7", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
# deck.assign_child_resource(PRCXI9300Container(name="container_for_nothing8", size_x=50, size_y=50, size_z=10, category="plate", ordering=collections.OrderedDict()), location=Coordinate(0, 0, 0))
|
||||
|
||||
# handler = PRCXI9300Handler(deck=deck, host="10.181.102.13", port=9999,
|
||||
# timeout=10.0, setup=False, debug=False,
|
||||
# matrix_id="fd383e6d-2d0e-40b5-9c01-1b2870b1f1b1",
|
||||
# channel_num=1, axis="Right") # Initialize the handler with the deck and host settings
|
||||
|
||||
# handler.set_tiprack([plate8]) # Set the tip rack for the handler
|
||||
# asyncio.run(handler.setup()) # Initialize the handler and setup the connection
|
||||
# from pylabrobot.resources import set_volume_tracking
|
||||
# # from pylabrobot.resources import set_tip_tracking
|
||||
# set_volume_tracking(enabled=True)
|
||||
|
||||
# plate11.set_well_liquids([("Water", 100) if (i % 8 == 0 and i // 8 < 6) else (None, 100) for i in range(96)]) # Set liquids for every 8 wells in plate8
|
||||
|
||||
# from unilabos.resources.graphio import *
|
||||
|
||||
# A = tree_to_list([resource_plr_to_ulab(deck)])
|
||||
# with open("deck.json", "w", encoding="utf-8") as f:
|
||||
# json.dump(A, f, indent=4, ensure_ascii=False)
|
||||
|
||||
# print(plate11.get_well(0).tracker.get_used_volume())
|
||||
# asyncio.run(handler.create_protocol(protocol_name="Test Protocol")) # Initialize the backend and setup the connection
|
||||
|
||||
# # asyncio.run(handler.pick_up_tips([plate8.children[8]],[0]))
|
||||
# # print(plate8.children[8])
|
||||
# # # asyncio.run(handler.run_protocol())
|
||||
# # asyncio.run(handler.aspirate([plate11.children[0]],[10], [0]))
|
||||
# # print(plate11.children[0])
|
||||
# # # asyncio.run(handler.run_protocol())
|
||||
# # asyncio.run(handler.dispense([plate1.children[0]],[10],[0]))
|
||||
# # print(plate1.children[0])
|
||||
# # # asyncio.run(handler.run_protocol())
|
||||
# # asyncio.run(handler.mix([plate1.children[0]], mix_time=3, mix_vol=5, height_to_bottom=0.5, offsets=Coordinate(0, 0, 0), mix_rate=100))
|
||||
# # print(plate1.children[0])
|
||||
# # asyncio.run(handler.discard_tips())
|
||||
|
||||
# asyncio.run(handler.add_liquid(
|
||||
# asp_vols=[10]*2,
|
||||
# dis_vols=[10]*2,
|
||||
# asp_vols=[10]*7,
|
||||
# dis_vols=[10]*7,
|
||||
# reagent_sources=[plate11.children[0]],
|
||||
# targets=plate11.children[-2:],
|
||||
# targets=plate1.children[2:9],
|
||||
# use_channels=[0],
|
||||
# flow_rates=[None] * 4,
|
||||
# offsets=[Coordinate(0, 0, 0)] * 4,
|
||||
@@ -1296,33 +1324,33 @@ if __name__ == "__main__":
|
||||
# spread="wide",
|
||||
# ))
|
||||
|
||||
# asyncio.run(handler.transfer_liquid(
|
||||
# asp_vols=[10]*2,
|
||||
# dis_vols=[10]*2,
|
||||
# sources=plate11.children[:2],
|
||||
# targets=plate11.children[-2:],
|
||||
# use_channels=[0],
|
||||
# offsets=[Coordinate(0, 0, 0)] * 4,
|
||||
# liquid_height=[None] * 2,
|
||||
# blow_out_air_volume=[None] * 2,
|
||||
# delays=None,
|
||||
# mix_times=3,
|
||||
# mix_vol=5,
|
||||
# spread="wide",
|
||||
# tip_racks=[plate8]
|
||||
# ))
|
||||
# # asyncio.run(handler.transfer_liquid(
|
||||
# # asp_vols=[10]*2,
|
||||
# # dis_vols=[10]*2,
|
||||
# # sources=plate11.children[:2],
|
||||
# # targets=plate11.children[-2:],
|
||||
# # use_channels=[0],
|
||||
# # offsets=[Coordinate(0, 0, 0)] * 4,
|
||||
# # liquid_height=[None] * 2,
|
||||
# # blow_out_air_volume=[None] * 2,
|
||||
# # delays=None,
|
||||
# # mix_times=3,
|
||||
# # mix_vol=5,
|
||||
# # spread="wide",
|
||||
# # tip_racks=[plate8]
|
||||
# # ))
|
||||
|
||||
asyncio.run(handler.remove_liquid(
|
||||
vols=[10]*2,
|
||||
sources=plate11.children[:2],
|
||||
waste_liquid=plate11.children[43],
|
||||
use_channels=[0],
|
||||
offsets=[Coordinate(0, 0, 0)] * 4,
|
||||
liquid_height=[None] * 2,
|
||||
blow_out_air_volume=[None] * 2,
|
||||
delays=None,
|
||||
spread="wide"
|
||||
))
|
||||
# # asyncio.run(handler.remove_liquid(
|
||||
# # vols=[10]*2,
|
||||
# # sources=plate11.children[:2],
|
||||
# # waste_liquid=plate11.children[43],
|
||||
# # use_channels=[0],
|
||||
# # offsets=[Coordinate(0, 0, 0)] * 4,
|
||||
# # liquid_height=[None] * 2,
|
||||
# # blow_out_air_volume=[None] * 2,
|
||||
# # delays=None,
|
||||
# # spread="wide"
|
||||
# # ))
|
||||
|
||||
|
||||
|
||||
@@ -1331,45 +1359,45 @@ if __name__ == "__main__":
|
||||
|
||||
|
||||
|
||||
asyncio.run(handler.run_protocol())
|
||||
# asyncio.run(handler.run_protocol())
|
||||
|
||||
# asyncio.run(handler.discard_tips())
|
||||
# asyncio.run(handler.mix(well_containers.children[:8
|
||||
# ], mix_time=3, mix_vol=50, height_to_bottom=0.5, offsets=Coordinate(0, 0, 0), mix_rate=100))
|
||||
#print(json.dumps(handler._unilabos_backend.steps_todo_list, indent=2)) # Print matrix info
|
||||
# # asyncio.run(handler.discard_tips())
|
||||
# # asyncio.run(handler.mix(well_containers.children[:8
|
||||
# # ], mix_time=3, mix_vol=50, height_to_bottom=0.5, offsets=Coordinate(0, 0, 0), mix_rate=100))
|
||||
# #print(json.dumps(handler._unilabos_backend.steps_todo_list, indent=2)) # Print matrix info
|
||||
|
||||
|
||||
# asyncio.run(handler.remove_liquid(
|
||||
# vols=[100]*16,
|
||||
# sources=well_containers.children[-16:],
|
||||
# waste_liquid=well_containers.children[:16], # 这个有些奇怪,但是好像也只能这么写
|
||||
# use_channels=[0, 1, 2, 3, 4, 5, 6, 7],
|
||||
# flow_rates=[None] * 32,
|
||||
# offsets=[Coordinate(0, 0, 0)] * 32,
|
||||
# liquid_height=[None] * 32,
|
||||
# blow_out_air_volume=[None] * 32,
|
||||
# spread="wide",
|
||||
# ))
|
||||
# asyncio.run(handler.transfer_liquid(
|
||||
# asp_vols=[100]*16,
|
||||
# dis_vols=[100]*16,
|
||||
# tip_racks=[tip_rack],
|
||||
# sources=well_containers.children[-16:],
|
||||
# targets=well_containers.children[:16],
|
||||
# use_channels=[0, 1, 2, 3, 4, 5, 6, 7],
|
||||
# offsets=[Coordinate(0, 0, 0)] * 32,
|
||||
# asp_flow_rates=[None] * 16,
|
||||
# dis_flow_rates=[None] * 16,
|
||||
# liquid_height=[None] * 32,
|
||||
# blow_out_air_volume=[None] * 32,
|
||||
# mix_times=3,
|
||||
# mix_vol=50,
|
||||
# spread="wide",
|
||||
# ))
|
||||
print(json.dumps(handler._unilabos_backend.steps_todo_list, indent=2)) # Print matrix info
|
||||
# input("pick_up_tips add step")
|
||||
#asyncio.run(handler.run_protocol()) # Run the protocol
|
||||
# input("Running protocol...")
|
||||
# input("Press Enter to continue...") # Wait for user input before proceeding
|
||||
# print("PRCXI9300Handler initialized with deck and host settings.")
|
||||
# # asyncio.run(handler.remove_liquid(
|
||||
# # vols=[100]*16,
|
||||
# # sources=well_containers.children[-16:],
|
||||
# # waste_liquid=well_containers.children[:16], # 这个有些奇怪,但是好像也只能这么写
|
||||
# # use_channels=[0, 1, 2, 3, 4, 5, 6, 7],
|
||||
# # flow_rates=[None] * 32,
|
||||
# # offsets=[Coordinate(0, 0, 0)] * 32,
|
||||
# # liquid_height=[None] * 32,
|
||||
# # blow_out_air_volume=[None] * 32,
|
||||
# # spread="wide",
|
||||
# # ))
|
||||
# # asyncio.run(handler.transfer_liquid(
|
||||
# # asp_vols=[100]*16,
|
||||
# # dis_vols=[100]*16,
|
||||
# # tip_racks=[tip_rack],
|
||||
# # sources=well_containers.children[-16:],
|
||||
# # targets=well_containers.children[:16],
|
||||
# # use_channels=[0, 1, 2, 3, 4, 5, 6, 7],
|
||||
# # offsets=[Coordinate(0, 0, 0)] * 32,
|
||||
# # asp_flow_rates=[None] * 16,
|
||||
# # dis_flow_rates=[None] * 16,
|
||||
# # liquid_height=[None] * 32,
|
||||
# # blow_out_air_volume=[None] * 32,
|
||||
# # mix_times=3,
|
||||
# # mix_vol=50,
|
||||
# # spread="wide",
|
||||
# # ))
|
||||
# print(json.dumps(handler._unilabos_backend.steps_todo_list, indent=2)) # Print matrix info
|
||||
# # input("pick_up_tips add step")
|
||||
# #asyncio.run(handler.run_protocol()) # Run the protocol
|
||||
# # input("Running protocol...")
|
||||
# # input("Press Enter to continue...") # Wait for user input before proceeding
|
||||
# # print("PRCXI9300Handler initialized with deck and host settings.")
|
||||
|
||||
|
||||
@@ -4580,6 +4580,7 @@ virtual_solid_dispenser:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties: {}
|
||||
required: []
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
@@ -4587,6 +4588,30 @@ virtual_solid_dispenser:
|
||||
title: cleanup参数
|
||||
type: object
|
||||
type: UniLabJsonCommandAsync
|
||||
auto-find_solid_reagent_bottle:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
reagent_name: null
|
||||
handles: []
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
reagent_name:
|
||||
type: string
|
||||
required:
|
||||
- reagent_name
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: find_solid_reagent_bottle参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-initialize:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
@@ -4599,6 +4624,7 @@ virtual_solid_dispenser:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties: {}
|
||||
required: []
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
@@ -4606,9 +4632,58 @@ virtual_solid_dispenser:
|
||||
title: initialize参数
|
||||
type: object
|
||||
type: UniLabJsonCommandAsync
|
||||
auto-parse_mass_string:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
mass_str: null
|
||||
handles: []
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
mass_str:
|
||||
type: string
|
||||
required:
|
||||
- mass_str
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: parse_mass_string参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-parse_mol_string:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
mol_str: null
|
||||
handles: []
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
mol_str:
|
||||
type: string
|
||||
required:
|
||||
- mol_str
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: parse_mol_string参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
module: unilabos.devices.virtual.virtual_solid_dispenser:VirtualSolidDispenser
|
||||
status_types:
|
||||
current_reagent: str
|
||||
device_info: dict
|
||||
dispensed_amount: float
|
||||
status: str
|
||||
total_operations: int
|
||||
@@ -4641,18 +4716,14 @@ virtual_solid_dispenser:
|
||||
type: object
|
||||
device_id:
|
||||
type: string
|
||||
max_capacity:
|
||||
default: 100.0
|
||||
type: number
|
||||
precision:
|
||||
default: 0.001
|
||||
type: number
|
||||
required: []
|
||||
type: object
|
||||
data:
|
||||
properties:
|
||||
current_reagent:
|
||||
type: string
|
||||
device_info:
|
||||
type: object
|
||||
dispensed_amount:
|
||||
type: number
|
||||
status:
|
||||
@@ -4664,6 +4735,7 @@ virtual_solid_dispenser:
|
||||
- current_reagent
|
||||
- dispensed_amount
|
||||
- total_operations
|
||||
- device_info
|
||||
type: object
|
||||
version: 1.0.0
|
||||
virtual_stirrer:
|
||||
|
||||
@@ -474,12 +474,12 @@ workstation:
|
||||
goal:
|
||||
ph_value: ph_value
|
||||
reagent: reagent
|
||||
vessel: vessel
|
||||
volume: volume
|
||||
settling_time: settling_time
|
||||
stir: stir
|
||||
stir_speed: stir_speed
|
||||
stir_time: stir_time
|
||||
settling_time: settling_time
|
||||
vessel: vessel
|
||||
volume: volume
|
||||
goal_default:
|
||||
ph_value: 0.0
|
||||
reagent: ''
|
||||
@@ -503,11 +503,6 @@ workstation:
|
||||
z: 0.0
|
||||
sample_id: ''
|
||||
type: ''
|
||||
volume: 0.0
|
||||
stir: false
|
||||
stir_speed: 300.0
|
||||
stir_time: 60.0
|
||||
settling_time: 30.0
|
||||
handles:
|
||||
input:
|
||||
- data_key: vessel
|
||||
@@ -622,21 +617,6 @@ workstation:
|
||||
- data
|
||||
title: Resource
|
||||
type: object
|
||||
volume:
|
||||
type: number
|
||||
description: 'Volume of the solution to adjust pH'
|
||||
stir:
|
||||
type: boolean
|
||||
description: "是否启用搅拌"
|
||||
stir_speed:
|
||||
type: number
|
||||
description: "搅拌速度(RPM)"
|
||||
stir_time:
|
||||
type: number
|
||||
description: "搅拌时间(秒)"
|
||||
settling_time:
|
||||
type: number
|
||||
description: "pH平衡时间(秒)"
|
||||
required:
|
||||
- vessel
|
||||
- ph_value
|
||||
@@ -2248,7 +2228,7 @@ workstation:
|
||||
type: number
|
||||
required:
|
||||
- vessel
|
||||
- #filtrate_vessel
|
||||
- filtrate_vessel
|
||||
- stir
|
||||
- stir_speed
|
||||
- temp
|
||||
|
||||
@@ -127,6 +127,8 @@ class Registry:
|
||||
},
|
||||
},
|
||||
"version": "1.0.0",
|
||||
"category": [],
|
||||
"config_info": [],
|
||||
"icon": "icon_device.webp",
|
||||
"registry_type": "device",
|
||||
"handles": [],
|
||||
|
||||
Reference in New Issue
Block a user