Files
Uni-Lab-OS/unilabos/compile/clean_vessel_protocol.py
Kongchang Feng 96f37b3b0d Add Mock Device for Organic Synthesis\添加有机合成的虚拟仪器和Protocol (#43)
* Add Device MockChiller

Add device MockChiller

* Add Device MockFilter

* Add Device MockPump

* Add Device MockRotavap

* Add Device MockSeparator

* Add Device MockStirrer

* Add Device MockHeater

* Add Device MockVacuum

* Add Device MockSolenoidValve

* Add Device Mock \_init_.py

* 规范模拟设备代码与注册表信息

* 更改Mock大写文件夹名

* 删除大写目录

* Edited Mock device json

* Match mock device with action

* Edit mock device yaml

* Add new action

* Add Virtual Device, Action, YAML, Protocol for Organic Syn

* 单独分类测试的protocol文件夹

* 更名Action

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>
2025-06-12 20:58:39 +08:00

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from typing import List, Dict, Any
import networkx as nx
def generate_clean_vessel_protocol(
G: nx.DiGraph,
vessel: str,
solvent: str,
volume: float,
temp: float,
repeats: int = 1
) -> List[Dict[str, Any]]:
"""
生成容器清洗操作的协议序列使用transfer操作实现清洗
Args:
G: 有向图,节点为设备和容器
vessel: 要清洗的容器名称
solvent: 用于清洗容器的溶剂名称
volume: 清洗溶剂的体积
temp: 清洗时的温度
repeats: 清洗操作的重复次数,默认为 1
Returns:
List[Dict[str, Any]]: 容器清洗操作的动作序列
Raises:
ValueError: 当找不到必要的设备时抛出异常
Examples:
clean_vessel_protocol = generate_clean_vessel_protocol(G, "reactor", "water", 50.0, 25.0, 2)
"""
action_sequence = []
# 查找虚拟转移泵设备进行清洗操作
pump_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_transfer_pump']
if not pump_nodes:
raise ValueError("没有找到可用的转移泵设备进行容器清洗")
pump_id = pump_nodes[0]
# 验证容器是否存在
if vessel not in G.nodes():
raise ValueError(f"容器 {vessel} 不存在于图中")
# 查找溶剂容器
solvent_vessel = f"flask_{solvent}"
if solvent_vessel not in G.nodes():
raise ValueError(f"溶剂容器 {solvent_vessel} 不存在于图中")
# 查找废液容器
waste_vessel = "flask_waste"
if waste_vessel not in G.nodes():
raise ValueError(f"废液容器 {waste_vessel} 不存在于图中")
# 查找加热设备(如果需要加热)
heatchill_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_heatchill']
heatchill_id = heatchill_nodes[0] if heatchill_nodes else None
# 执行清洗操作序列
for repeat in range(repeats):
# 1. 如果需要加热,先设置温度
if temp > 25.0 and heatchill_id:
action_sequence.append({
"device_id": heatchill_id,
"action_name": "heat_chill_start",
"action_kwargs": {
"vessel": vessel,
"temp": temp,
"purpose": "cleaning"
}
})
# 2. 使用transfer操作从溶剂容器转移清洗溶剂到目标容器
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": solvent_vessel,
"to_vessel": vessel,
"volume": volume,
"amount": f"cleaning with {solvent} - cycle {repeat + 1}",
"time": 0.0,
"viscous": False,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": False
}
})
# 3. 等待清洗作用时间可选可以添加wait操作
# 这里省略wait操作直接进行下一步
# 4. 将清洗后的溶剂转移到废液容器
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": vessel,
"to_vessel": waste_vessel,
"volume": volume,
"amount": f"waste from cleaning {vessel} - cycle {repeat + 1}",
"time": 0.0,
"viscous": False,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": False
}
})
# 5. 如果加热了,停止加热
if temp > 25.0 and heatchill_id:
action_sequence.append({
"device_id": heatchill_id,
"action_name": "heat_chill_stop",
"action_kwargs": {
"vessel": vessel
}
})
return action_sequence