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modify workstation_architecture docs bioyond_HR (#133) * feat: Enhance Bioyond synchronization and resource management - Implemented synchronization for all material types (consumables, samples, reagents) from Bioyond, logging detailed information for each type. - Improved error handling and logging during synchronization processes. - Added functionality to save Bioyond material IDs in UniLab resources for future updates. - Enhanced the `sync_to_external` method to handle material movements correctly, including querying and creating materials in Bioyond. - Updated warehouse configurations to support new storage types and improved layout for better resource management. - Introduced new resource types such as reactors and tip boxes, with detailed specifications. - Modified warehouse factory to support column offsets for naming conventions (e.g., A05-D08). - Improved resource tracking by merging extra attributes instead of overwriting them. - Added a new method for updating resources in Bioyond, ensuring better synchronization of resource changes. * feat: 添加TipBox和Reactor的配置到bottles.yaml * fix: 修复液体投料方法中的volume参数处理逻辑 修复solid_feeding_vials方法中的volume参数处理逻辑,优化solvents参数的使用条件 更新液体投料方法,支持通过溶剂信息自动计算体积,添加solvents参数并更新文档描述 Add batch creation methods for vial and solution tasks 添加批量创建90%10%小瓶投料任务和二胺溶液配置任务的功能,更新相关参数和默认值
11 KiB
11 KiB
简单单变量动作函数
SendCmd
:language: yaml
常量有机化学操作
Uni-Lab 常量有机化学指令集多数来自 XDL,包含有机合成实验中常见的操作,如加热、搅拌、冷却等。
Clean
:language: yaml
HeatChillStart
:language: yaml
HeatChillStop
:language: yaml
PumpTransfer
:language: yaml
移液工作站及相关生物自动化设备操作
Uni-Lab 生物操作指令集多数来自 PyLabRobot,包含生物实验中常见的操作,如移液、混匀、离心等。
LiquidHandlerDiscardTips
:language: yaml
LiquidHandlerDropTips
:language: yaml
LiquidHandlerDropTips96
:language: yaml
LiquidHandlerMoveLid
:language: yaml
LiquidHandlerMovePlate
:language: yaml
LiquidHandlerMoveResource
:language: yaml
LiquidHandlerPickUpTips
:language: yaml
LiquidHandlerPickUpTips96
:language: yaml
LiquidHandlerReturnTips
:language: yaml
LiquidHandlerReturnTips96
:language: yaml
LiquidHandlerStamp
:language: yaml
多工作站及小车运行、物料转移
AGVTransfer
:language: yaml
WorkStationRun
:language: yaml
机械臂、夹爪等机器人设备
Uni-Lab 机械臂、机器人、夹爪和导航指令集沿用 ROS2 的 control_msgs 和 nav2_msgs:
FollowJointTrajectory
# The trajectory for all revolute, continuous or prismatic joints
trajectory_msgs/JointTrajectory trajectory
# The trajectory for all planar or floating joints (i.e. individual joints with more than one DOF)
trajectory_msgs/MultiDOFJointTrajectory multi_dof_trajectory
# Tolerances for the trajectory. If the measured joint values fall
# outside the tolerances the trajectory goal is aborted. Any
# tolerances that are not specified (by being omitted or set to 0) are
# set to the defaults for the action server (often taken from the
# parameter server).
# Tolerances applied to the joints as the trajectory is executed. If
# violated, the goal aborts with error_code set to
# PATH_TOLERANCE_VIOLATED.
JointTolerance[] path_tolerance
JointComponentTolerance[] component_path_tolerance
# To report success, the joints must be within goal_tolerance of the
# final trajectory value. The goal must be achieved by time the
# trajectory ends plus goal_time_tolerance. (goal_time_tolerance
# allows some leeway in time, so that the trajectory goal can still
# succeed even if the joints reach the goal some time after the
# precise end time of the trajectory).
#
# If the joints are not within goal_tolerance after "trajectory finish
# time" + goal_time_tolerance, the goal aborts with error_code set to
# GOAL_TOLERANCE_VIOLATED
JointTolerance[] goal_tolerance
JointComponentTolerance[] component_goal_tolerance
builtin_interfaces/Duration goal_time_tolerance
---
int32 error_code
int32 SUCCESSFUL = 0
int32 INVALID_GOAL = -1
int32 INVALID_JOINTS = -2
int32 OLD_HEADER_TIMESTAMP = -3
int32 PATH_TOLERANCE_VIOLATED = -4
int32 GOAL_TOLERANCE_VIOLATED = -5
# Human readable description of the error code. Contains complementary
# information that is especially useful when execution fails, for instance:
# - INVALID_GOAL: The reason for the invalid goal (e.g., the requested
# trajectory is in the past).
# - INVALID_JOINTS: The mismatch between the expected controller joints
# and those provided in the goal.
# - PATH_TOLERANCE_VIOLATED and GOAL_TOLERANCE_VIOLATED: Which joint
# violated which tolerance, and by how much.
string error_string
---
std_msgs/Header header
string[] joint_names
trajectory_msgs/JointTrajectoryPoint desired
trajectory_msgs/JointTrajectoryPoint actual
trajectory_msgs/JointTrajectoryPoint error
string[] multi_dof_joint_names
trajectory_msgs/MultiDOFJointTrajectoryPoint multi_dof_desired
trajectory_msgs/MultiDOFJointTrajectoryPoint multi_dof_actual
trajectory_msgs/MultiDOFJointTrajectoryPoint multi_dof_error
GripperCommand
GripperCommand command
---
float64 position # The current gripper gap size (in meters)
float64 effort # The current effort exerted (in Newtons)
bool stalled # True iff the gripper is exerting max effort and not moving
bool reached_goal # True iff the gripper position has reached the commanded setpoint
---
float64 position # The current gripper gap size (in meters)
float64 effort # The current effort exerted (in Newtons)
bool stalled # True iff the gripper is exerting max effort and not moving
bool reached_goal # True iff the gripper position has reached the commanded setpoint
JointTrajectory
trajectory_msgs/JointTrajectory trajectory
---
---
ParallelGripperCommand
# Parallel grippers refer to an end effector where two opposing fingers grasp an object from opposite sides.
sensor_msgs/JointState command
# name: the name(s) of the joint this command is requesting
# position: desired position of each gripper joint (radians or meters)
# velocity: (optional, not used if empty) max velocity of the joint allowed while moving (radians or meters / second)
# effort: (optional, not used if empty) max effort of the joint allowed while moving (Newtons or Newton-meters)
---
sensor_msgs/JointState state # The current gripper state.
# position of each joint (radians or meters)
# optional: velocity of each joint (radians or meters / second)
# optional: effort of each joint (Newtons or Newton-meters)
bool stalled # True if the gripper is exerting max effort and not moving
bool reached_goal # True if the gripper position has reached the commanded setpoint
---
sensor_msgs/JointState state # The current gripper state.
# position of each joint (radians or meters)
# optional: velocity of each joint (radians or meters / second)
# optional: effort of each joint (Newtons or Newton-meters)
PointHead
geometry_msgs/PointStamped target
geometry_msgs/Vector3 pointing_axis
string pointing_frame
builtin_interfaces/Duration min_duration
float64 max_velocity
---
---
float64 pointing_angle_error
SingleJointPosition
float64 position
builtin_interfaces/Duration min_duration
float64 max_velocity
---
---
std_msgs/Header header
float64 position
float64 velocity
float64 error
AssistedTeleop
#goal definition
builtin_interfaces/Duration time_allowance
---
#result definition
builtin_interfaces/Duration total_elapsed_time
---
#feedback
builtin_interfaces/Duration current_teleop_duration
BackUp
#goal definition
geometry_msgs/Point target
float32 speed
builtin_interfaces/Duration time_allowance
---
#result definition
builtin_interfaces/Duration total_elapsed_time
---
#feedback definition
float32 distance_traveled
ComputePathThroughPoses
#goal definition
geometry_msgs/PoseStamped[] goals
geometry_msgs/PoseStamped start
string planner_id
bool use_start # If false, use current robot pose as path start, if true, use start above instead
---
#result definition
nav_msgs/Path path
builtin_interfaces/Duration planning_time
---
#feedback definition
ComputePathToPose
#goal definition
geometry_msgs/PoseStamped goal
geometry_msgs/PoseStamped start
string planner_id
bool use_start # If false, use current robot pose as path start, if true, use start above instead
---
#result definition
nav_msgs/Path path
builtin_interfaces/Duration planning_time
---
#feedback definition
DriveOnHeading
#goal definition
geometry_msgs/Point target
float32 speed
builtin_interfaces/Duration time_allowance
---
#result definition
builtin_interfaces/Duration total_elapsed_time
---
#feedback definition
float32 distance_traveled
DummyBehavior
#goal definition
std_msgs/String command
---
#result definition
builtin_interfaces/Duration total_elapsed_time
---
#feedback definition
FollowPath
#goal definition
nav_msgs/Path path
string controller_id
string goal_checker_id
---
#result definition
std_msgs/Empty result
---
#feedback definition
float32 distance_to_goal
float32 speed
FollowWaypoints
#goal definition
geometry_msgs/PoseStamped[] poses
---
#result definition
int32[] missed_waypoints
---
#feedback definition
uint32 current_waypoint
NavigateThroughPoses
#goal definition
geometry_msgs/PoseStamped[] poses
string behavior_tree
---
#result definition
std_msgs/Empty result
---
#feedback definition
geometry_msgs/PoseStamped current_pose
builtin_interfaces/Duration navigation_time
builtin_interfaces/Duration estimated_time_remaining
int16 number_of_recoveries
float32 distance_remaining
int16 number_of_poses_remaining
NavigateToPose
#goal definition
geometry_msgs/PoseStamped pose
string behavior_tree
---
#result definition
std_msgs/Empty result
---
#feedback definition
geometry_msgs/PoseStamped current_pose
builtin_interfaces/Duration navigation_time
builtin_interfaces/Duration estimated_time_remaining
int16 number_of_recoveries
float32 distance_remaining
SmoothPath
#goal definition
nav_msgs/Path path
string smoother_id
builtin_interfaces/Duration max_smoothing_duration
bool check_for_collisions
---
#result definition
nav_msgs/Path path
builtin_interfaces/Duration smoothing_duration
bool was_completed
---
#feedback definition
Spin
#goal definition
float32 target_yaw
builtin_interfaces/Duration time_allowance
---
#result definition
builtin_interfaces/Duration total_elapsed_time
---
#feedback definition
float32 angular_distance_traveled
Wait
#goal definition
builtin_interfaces/Duration time
---
#result definition
builtin_interfaces/Duration total_elapsed_time
---
#feedback definition
builtin_interfaces/Duration time_left