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* Add Device MockChiller Add device MockChiller * Add Device MockFilter * Add Device MockPump * Add Device MockRotavap * Add Device MockSeparator * Add Device MockStirrer * Add Device MockHeater * Add Device MockVacuum * Add Device MockSolenoidValve * Add Device Mock \_init_.py * 规范模拟设备代码与注册表信息 * 更改Mock大写文件夹名 * 删除大写目录 * Edited Mock device json * Match mock device with action * Edit mock device yaml * Add new action * Add Virtual Device, Action, YAML, Protocol for Organic Syn * 单独分类测试的protocol文件夹 * 更名Action --------- Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>
162 lines
5.3 KiB
Python
162 lines
5.3 KiB
Python
from typing import List, Dict, Any
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import networkx as nx
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def generate_dissolve_protocol(
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G: nx.DiGraph,
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vessel: str,
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solvent: str,
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volume: float,
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amount: str = "",
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temp: float = 25.0,
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time: float = 0.0,
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stir_speed: float = 0.0
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) -> List[Dict[str, Any]]:
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"""
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生成溶解操作的协议序列
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Args:
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G: 有向图,节点为设备和容器
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vessel: 装有要溶解物质的容器名称
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solvent: 用于溶解物质的溶剂名称
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volume: 溶剂的体积,可选参数
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amount: 要溶解物质的量,可选参数
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temp: 溶解时的温度,可选参数
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time: 溶解的时间,可选参数
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stir_speed: 搅拌速度,可选参数
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Returns:
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List[Dict[str, Any]]: 溶解操作的动作序列
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Raises:
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ValueError: 当找不到必要的设备时抛出异常
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Examples:
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dissolve_protocol = generate_dissolve_protocol(G, "reactor", "water", 100.0, "NaCl 5g", 60.0, 300.0, 500.0)
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"""
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action_sequence = []
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# 验证容器是否存在
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if vessel not in G.nodes():
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raise ValueError(f"容器 {vessel} 不存在于图中")
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# 查找溶剂容器
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solvent_vessel = f"flask_{solvent}"
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if solvent_vessel not in G.nodes():
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# 如果没有找到特定溶剂容器,查找可用的源容器
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available_vessels = [node for node in G.nodes()
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if node.startswith('flask_') and
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G.nodes[node].get('type') == 'container']
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if available_vessels:
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solvent_vessel = available_vessels[0]
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else:
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raise ValueError(f"没有找到溶剂容器 {solvent}")
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# 查找转移泵设备
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pump_nodes = [node for node in G.nodes()
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if G.nodes[node].get('class') == 'virtual_transfer_pump']
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if not pump_nodes:
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raise ValueError("没有找到可用的转移泵设备")
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pump_id = pump_nodes[0]
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# 查找加热设备(如果需要加热)
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heatchill_nodes = [node for node in G.nodes()
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if G.nodes[node].get('class') == 'virtual_heatchill']
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heatchill_id = heatchill_nodes[0] if heatchill_nodes else None
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# 查找搅拌设备(如果需要搅拌)
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stirrer_nodes = [node for node in G.nodes()
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if G.nodes[node].get('class') == 'virtual_stirrer']
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stirrer_id = stirrer_nodes[0] if stirrer_nodes else None
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# 步骤1:如果需要加热,先设置温度
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if temp > 25.0 and heatchill_id:
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action_sequence.append({
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"device_id": heatchill_id,
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"action_name": "heat_chill_start",
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"action_kwargs": {
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"vessel": vessel,
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"temp": temp,
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"purpose": "dissolution"
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}
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})
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# 步骤2:添加溶剂到容器中
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if volume > 0:
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action_sequence.append({
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"device_id": pump_id,
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"action_name": "transfer",
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"action_kwargs": {
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"from_vessel": solvent_vessel,
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"to_vessel": vessel,
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"volume": volume,
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"amount": f"solvent {solvent} for dissolving {amount}",
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"time": 0.0,
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"viscous": False,
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"rinsing_solvent": "",
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"rinsing_volume": 0.0,
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"rinsing_repeats": 0,
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"solid": False
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}
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})
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# 步骤3:如果需要搅拌,开始搅拌
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if stir_speed > 0 and stirrer_id:
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action_sequence.append({
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"device_id": stirrer_id,
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"action_name": "start_stir",
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"action_kwargs": {
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"vessel": vessel,
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"stir_speed": stir_speed,
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"purpose": f"dissolving {amount} in {solvent}"
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}
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})
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# 步骤4:如果指定了溶解时间,等待溶解完成
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if time > 0:
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# 这里可以添加等待操作,或者使用搅拌操作来模拟溶解时间
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if stirrer_id and stir_speed > 0:
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# 停止之前的搅拌,使用定时搅拌
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action_sequence.append({
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"device_id": stirrer_id,
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"action_name": "stop_stir",
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"action_kwargs": {
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"vessel": vessel
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}
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})
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# 开始定时搅拌
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action_sequence.append({
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"device_id": stirrer_id,
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"action_name": "stir",
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"action_kwargs": {
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"stir_time": time,
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"stir_speed": stir_speed,
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"settling_time": 10.0 # 搅拌后静置10秒
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}
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})
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# 步骤5:如果加热了,停止加热
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if temp > 25.0 and heatchill_id:
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action_sequence.append({
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"device_id": heatchill_id,
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"action_name": "heat_chill_stop",
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"action_kwargs": {
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"vessel": vessel
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}
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})
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# 步骤6:如果还在搅拌,停止搅拌(除非已经用定时搅拌)
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if stir_speed > 0 and stirrer_id and time == 0:
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action_sequence.append({
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"device_id": stirrer_id,
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"action_name": "stop_stir",
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"action_kwargs": {
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"vessel": vessel
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}
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})
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return action_sequence |