mirror of
https://github.com/dptech-corp/Uni-Lab-OS.git
synced 2025-12-14 21:24:40 +00:00
* Cleanup registry to be easy-understanding (#76) * delete deprecated mock devices * rename categories * combine chromatographic devices * rename rviz simulation nodes * organic virtual devices * parse vessel_id * run registry completion before merge --------- Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com> * fix: workstation handlers and vessel_id parsing * fix: working dir error when input config path feat: report publish topic when error * modify default discovery_interval to 15s * feat: add trace log level * feat: 添加ChinWe设备控制类,支持串口通信和电机控制功能 (#79) * fix: drop_tips not using auto resource select * fix: discard_tips error * fix: discard_tips * fix: prcxi_res * add: prcxi res fix: startup slow * feat: workstation example * fix pumps and liquid_handler handle * feat: 优化protocol node节点运行日志 * fix all protocol_compilers and remove deprecated devices * feat: 新增use_remote_resource参数 * fix and remove redundant info * bugfixes on organic protocols * fix filter protocol * fix protocol node * 临时兼容错误的driver写法 * fix: prcxi import error * use call_async in all service to avoid deadlock * fix: figure_resource * Update recipe.yaml * add workstation template and battery example * feat: add sk & ak * update workstation base * Create workstation_architecture.md * refactor: workstation_base 重构为仅含业务逻辑,通信和子设备管理交给 ProtocolNode * refactor: ProtocolNode→WorkstationNode * Add:msgs.action (#83) * update: Workstation dev 将版本号从 0.10.3 更新为 0.10.4 (#84) * Add:msgs.action * update: 将版本号从 0.10.3 更新为 0.10.4 * simplify resource system * uncompleted refactor * example for use WorkstationBase * feat: websocket * feat: websocket test * feat: workstation example * feat: action status * fix: station自己的方法注册错误 * fix: 还原protocol node处理方法 * fix: build * fix: missing job_id key * ws test version 1 * ws test version 2 * ws protocol * 增加物料关系上传日志 * 增加物料关系上传日志 * 修正物料关系上传 * 修复工站的tracker实例追踪失效问题 * 增加handle检测,增加material edge关系上传 * 修复event loop错误 * 修复edge上报错误 * 修复async错误 * 更新schema的title字段 * 主机节点信息等支持自动刷新 * 注册表编辑器 * 修复status密集发送时,消息出错 * 增加addr参数 * fix: addr param * fix: addr param * 取消labid 和 强制config输入 * Add action definitions for LiquidHandlerSetGroup and LiquidHandlerTransferGroup - Created LiquidHandlerSetGroup.action with fields for group name, wells, and volumes. - Created LiquidHandlerTransferGroup.action with fields for source and target group names and unit volume. - Both actions include response fields for return information and success status. * Add LiquidHandlerSetGroup and LiquidHandlerTransferGroup actions to CMakeLists * Add set_group and transfer_group methods to PRCXI9300Handler and update liquid_handler.yaml * result_info改为字典类型 * 新增uat的地址替换 * runze multiple pump support (cherry picked from commit49354fcf39) * remove runze multiple software obtainer (cherry picked from commit8bcc92a394) * support multiple backbone (cherry picked from commit4771ff2347) * Update runze pump format * Correct runze multiple backbone * Update runze_multiple_backbone * Correct runze pump multiple receive method. * Correct runze pump multiple receive method. * 对于PRCXI9320的transfer_group,一对多和多对多 * 移除MQTT,更新launch文档,提供注册表示例文件,更新到0.10.5 * fix import error * fix dupe upload registry * refactor ws client * add server timeout * Fix: run-column with correct vessel id (#86) * fix run_column * Update run_column_protocol.py (cherry picked from commite5aa4d940a) * resource_update use resource_add * 新增版位推荐功能 * 重新规定了版位推荐的入参 * update registry with nested obj * fix protocol node log_message, added create_resource return value * fix protocol node log_message, added create_resource return value * try fix add protocol * fix resource_add * 修复移液站错误的aspirate注册表 * Feature/xprbalance-zhida (#80) * feat(devices): add Zhida GC/MS pretreatment automation workstation * feat(devices): add mettler_toledo xpr balance * balance * 重新补全zhida注册表 * PRCXI9320 json * PRCXI9320 json * PRCXI9320 json * fix resource download * remove class for resource * bump version to 0.10.6 * 更新所有注册表 * 修复protocolnode的兼容性 * 修复protocolnode的兼容性 * Update install md * Add Defaultlayout * 更新物料接口 * fix dict to tree/nested-dict converter * coin_cell_station draft * refactor: rename "station_resource" to "deck" * add standardized BIOYOND resources: bottle_carrier, bottle * refactor and add BIOYOND resources tests * add BIOYOND deck assignment and pass all tests * fix: update resource with correct structure; remove deprecated liquid_handler set_group action * feat: 将新威电池测试系统驱动与配置文件并入 workstation_dev_YB2 (#92) * feat: 新威电池测试系统驱动与注册文件 * feat: bring neware driver & battery.json into workstation_dev_YB2 * add bioyond studio draft * bioyond station with communication init and resource sync * fix bioyond station and registry * fix: update resource with correct structure; remove deprecated liquid_handler set_group action * frontend_docs * create/update resources with POST/PUT for big amount/ small amount data * create/update resources with POST/PUT for big amount/ small amount data * refactor: add itemized_carrier instead of carrier consists of ResourceHolder * create warehouse by factory func * update bioyond launch json * add child_size for itemized_carrier * fix bioyond resource io * Workstation templates: Resources and its CRUD, and workstation tasks (#95) * coin_cell_station draft * refactor: rename "station_resource" to "deck" * add standardized BIOYOND resources: bottle_carrier, bottle * refactor and add BIOYOND resources tests * add BIOYOND deck assignment and pass all tests * fix: update resource with correct structure; remove deprecated liquid_handler set_group action * feat: 将新威电池测试系统驱动与配置文件并入 workstation_dev_YB2 (#92) * feat: 新威电池测试系统驱动与注册文件 * feat: bring neware driver & battery.json into workstation_dev_YB2 * add bioyond studio draft * bioyond station with communication init and resource sync * fix bioyond station and registry * create/update resources with POST/PUT for big amount/ small amount data * refactor: add itemized_carrier instead of carrier consists of ResourceHolder * create warehouse by factory func * update bioyond launch json * add child_size for itemized_carrier * fix bioyond resource io --------- Co-authored-by: h840473807 <47357934+h840473807@users.noreply.github.com> Co-authored-by: Xie Qiming <97236197+Andy6M@users.noreply.github.com> * 更新物料接口 * Workstation dev yb2 (#100) * Refactor and extend reaction station action messages * Refactor dispensing station tasks to enhance parameter clarity and add batch processing capabilities - Updated `create_90_10_vial_feeding_task` to include detailed parameters for 90%/10% vial feeding, improving clarity and usability. - Introduced `create_batch_90_10_vial_feeding_task` for batch processing of 90%/10% vial feeding tasks with JSON formatted input. - Added `create_batch_diamine_solution_task` for batch preparation of diamine solution, also utilizing JSON formatted input. - Refined `create_diamine_solution_task` to include additional parameters for better task configuration. - Enhanced schema descriptions and default values for improved user guidance. * 修复to_plr_resources * add update remove * 支持选择器注册表自动生成 支持转运物料 * 修复资源添加 * 修复transfer_resource_to_another生成 * 更新transfer_resource_to_another参数,支持spot入参 * 新增test_resource动作 * fix host_node error * fix host_node test_resource error * fix host_node test_resource error * 过滤本地动作 * 移动内部action以兼容host node * 修复同步任务报错不显示的bug * feat: 允许返回非本节点物料,后面可以通过decoration进行区分,就不进行warning了 * update todo * modify bioyond/plr converter, bioyond resource registry, and tests * pass the tests * update todo * add conda-pack-build.yml * add auto install script for conda-pack-build.yml (cherry picked from commit172599adcf) * update conda-pack-build.yml * update conda-pack-build.yml * update conda-pack-build.yml * update conda-pack-build.yml * update conda-pack-build.yml * Add version in __init__.py Update conda-pack-build.yml Add create_zip_archive.py * Update conda-pack-build.yml * Update conda-pack-build.yml (with mamba) * Update conda-pack-build.yml * Fix FileNotFoundError * Try fix 'charmap' codec can't encode characters in position 16-23: character maps to <undefined> * Fix unilabos msgs search error * Fix environment_check.py * Update recipe.yaml * Update registry. Update uuid loop figure method. Update install docs. * Fix nested conda pack * Fix one-key installation path error * Bump version to 0.10.7 * Workshop bj (#99) * Add LaiYu Liquid device integration and tests Introduce LaiYu Liquid device implementation, including backend, controllers, drivers, configuration, and resource files. Add hardware connection, tip pickup, and simplified test scripts, as well as experiment and registry configuration for LaiYu Liquid. Documentation and .gitignore for the device are also included. * feat(LaiYu_Liquid): 重构设备模块结构并添加硬件文档 refactor: 重新组织LaiYu_Liquid模块目录结构 docs: 添加SOPA移液器和步进电机控制指令文档 fix: 修正设备配置中的最大体积默认值 test: 新增工作台配置测试用例 chore: 删除过时的测试脚本和配置文件 * add * 重构: 将 LaiYu_Liquid.py 重命名为 laiyu_liquid_main.py 并更新所有导入引用 - 使用 git mv 将 LaiYu_Liquid.py 重命名为 laiyu_liquid_main.py - 更新所有相关文件中的导入引用 - 保持代码功能不变,仅改善命名一致性 - 测试确认所有导入正常工作 * 修复: 在 core/__init__.py 中添加 LaiYuLiquidBackend 导出 - 添加 LaiYuLiquidBackend 到导入列表 - 添加 LaiYuLiquidBackend 到 __all__ 导出列表 - 确保所有主要类都可以正确导入 * 修复大小写文件夹名字 * 电池装配工站二次开发教程(带目录)上传至dev (#94) * 电池装配工站二次开发教程 * Update intro.md * 物料教程 * 更新物料教程,json格式注释 * Update prcxi driver & fix transfer_liquid mix_times (#90) * Update prcxi driver & fix transfer_liquid mix_times * fix: correct mix_times type * Update liquid_handler registry * test: prcxi.py * Update registry from pr * fix ony-key script not exist * clean files --------- Co-authored-by: Junhan Chang <changjh@dp.tech> Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com> Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com> Co-authored-by: Xie Qiming <97236197+Andy6M@users.noreply.github.com> Co-authored-by: h840473807 <47357934+h840473807@users.noreply.github.com> Co-authored-by: LccLink <1951855008@qq.com> Co-authored-by: lixinyu1011 <61094742+lixinyu1011@users.noreply.github.com> Co-authored-by: shiyubo0410 <shiyubo@dp.tech>
379 lines
11 KiB
Markdown
379 lines
11 KiB
Markdown
# 工作站基础架构设计文档
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## 1. 整体架构图
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```mermaid
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graph TB
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subgraph "工作站基础架构"
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WB[WorkstationBase]
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WB --> |继承| RPN[ROS2WorkstationNode]
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WB --> |组合| WCB[WorkstationCommunicationBase]
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WB --> |组合| MMB[MaterialManagementBase]
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WB --> |组合| WHS[WorkstationHTTPService]
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end
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subgraph "通信层实现"
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WCB --> |实现| PLC[PLCCommunication]
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WCB --> |实现| SER[SerialCommunication]
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WCB --> |实现| ETH[EthernetCommunication]
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end
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subgraph "物料管理实现"
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MMB --> |实现| PLR[PyLabRobotMaterialManager]
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MMB --> |实现| BIO[BioyondMaterialManager]
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MMB --> |实现| SIM[SimpleMaterialManager]
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end
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subgraph "HTTP服务"
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WHS --> |处理| LIMS[LIMS协议报送]
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WHS --> |处理| MAT[物料变更报送]
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WHS --> |处理| ERR[错误处理报送]
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end
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subgraph "具体工作站实现"
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WB --> |继承| WS1[PLCWorkstation]
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WB --> |继承| WS2[ReportingWorkstation]
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WB --> |继承| WS3[HybridWorkstation]
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end
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subgraph "外部系统"
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EXT1[PLC设备] --> |通信| PLC
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EXT2[外部工作站] --> |HTTP报送| WHS
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EXT3[LIMS系统] --> |HTTP报送| WHS
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EXT4[Bioyond物料系统] --> |查询| BIO
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end
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```
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## 2. 类关系图
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```mermaid
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classDiagram
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class WorkstationBase {
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<<abstract>>
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+device_id: str
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+communication: WorkstationCommunicationBase
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+material_management: MaterialManagementBase
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+http_service: WorkstationHTTPService
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+workflow_status: WorkflowStatus
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+supported_workflows: Dict
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+_create_communication_module()*
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+_create_material_management_module()*
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+_register_supported_workflows()*
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+process_step_finish_report()
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+process_sample_finish_report()
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+process_order_finish_report()
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+process_material_change_report()
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+handle_external_error()
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+start_workflow()
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+stop_workflow()
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+get_workflow_status()
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+get_device_status()
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}
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class ROS2WorkstationNode {
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+sub_devices: Dict
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+protocol_names: List
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+execute_single_action()
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+create_ros_action_server()
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+initialize_device()
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}
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class WorkstationCommunicationBase {
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<<abstract>>
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+config: CommunicationConfig
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+is_connected: bool
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+connect()
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+disconnect()
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+start_workflow()*
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+stop_workflow()*
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+get_device_status()*
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+write_register()
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+read_register()
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}
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class MaterialManagementBase {
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<<abstract>>
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+device_id: str
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+deck_config: Dict
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+resource_tracker: DeviceNodeResourceTracker
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+plr_deck: Deck
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+find_materials_by_type()
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+update_material_location()
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+convert_to_unilab_format()
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+_create_resource_by_type()*
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}
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class WorkstationHTTPService {
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+workstation_instance: WorkstationBase
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+host: str
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+port: int
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+start()
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+stop()
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+_handle_step_finish_report()
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+_handle_material_change_report()
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}
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class PLCWorkstation {
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+plc_config: Dict
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+modbus_client: ModbusTCPClient
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+_create_communication_module()
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+_create_material_management_module()
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+_register_supported_workflows()
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}
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class ReportingWorkstation {
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+report_handlers: Dict
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+_create_communication_module()
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+_create_material_management_module()
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+_register_supported_workflows()
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}
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WorkstationBase --|> ROS2WorkstationNode
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WorkstationBase *-- WorkstationCommunicationBase
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WorkstationBase *-- MaterialManagementBase
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WorkstationBase *-- WorkstationHTTPService
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PLCWorkstation --|> WorkstationBase
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ReportingWorkstation --|> WorkstationBase
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WorkstationCommunicationBase <|-- PLCCommunication
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WorkstationCommunicationBase <|-- DummyCommunication
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MaterialManagementBase <|-- PyLabRobotMaterialManager
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MaterialManagementBase <|-- SimpleMaterialManager
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```
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## 3. 工作站启动时序图
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```mermaid
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sequenceDiagram
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participant APP as Application
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participant WS as WorkstationBase
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participant COMM as CommunicationModule
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participant MAT as MaterialManager
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participant HTTP as HTTPService
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participant ROS as ROS2WorkstationNode
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APP->>WS: 创建工作站实例
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WS->>ROS: 初始化ROS2WorkstationNode
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ROS->>ROS: 初始化子设备
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ROS->>ROS: 设置硬件接口代理
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WS->>COMM: _create_communication_module()
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COMM->>COMM: 初始化通信配置
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COMM->>COMM: 建立PLC/串口连接
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COMM-->>WS: 返回通信模块实例
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WS->>MAT: _create_material_management_module()
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MAT->>MAT: 创建PyLabRobot Deck
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MAT->>MAT: 初始化物料资源
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MAT->>MAT: 注册到ResourceTracker
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MAT-->>WS: 返回物料管理实例
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WS->>WS: _register_supported_workflows()
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WS->>WS: _create_workstation_services()
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WS->>HTTP: _start_http_service()
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HTTP->>HTTP: 创建HTTP服务器
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HTTP->>HTTP: 启动监听线程
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HTTP-->>WS: HTTP服务启动完成
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WS-->>APP: 工作站初始化完成
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```
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## 4. 工作流执行时序图
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```mermaid
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sequenceDiagram
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participant EXT as ExternalSystem
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participant WS as WorkstationBase
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participant COMM as CommunicationModule
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participant MAT as MaterialManager
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participant ROS as ROS2WorkstationNode
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participant DEV as SubDevice
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EXT->>WS: start_workflow(type, params)
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WS->>WS: 验证工作流类型
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WS->>COMM: start_workflow(type, params)
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COMM->>COMM: 发送启动命令到PLC
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COMM-->>WS: 启动成功
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WS->>WS: 更新workflow_status = RUNNING
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loop 工作流步骤执行
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WS->>ROS: execute_single_action(device_id, action, params)
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ROS->>DEV: 发送ROS Action请求
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DEV->>DEV: 执行设备动作
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DEV-->>ROS: 返回执行结果
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ROS-->>WS: 返回动作结果
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WS->>MAT: update_material_location(material_id, location)
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MAT->>MAT: 更新PyLabRobot资源状态
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MAT-->>WS: 更新完成
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end
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WS->>COMM: get_workflow_status()
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COMM->>COMM: 查询PLC状态寄存器
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COMM-->>WS: 返回状态信息
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WS->>WS: 更新workflow_status = COMPLETED
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WS-->>EXT: 工作流执行完成
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```
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## 5. HTTP报送处理时序图
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```mermaid
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sequenceDiagram
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participant EXT as ExternalWorkstation
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participant HTTP as HTTPService
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participant WS as WorkstationBase
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participant MAT as MaterialManager
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participant DB as DataStorage
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EXT->>HTTP: POST /report/step_finish
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HTTP->>HTTP: 解析请求数据
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HTTP->>HTTP: 验证LIMS协议字段
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HTTP->>WS: process_step_finish_report(request)
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WS->>WS: 增加接收计数
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WS->>WS: 记录步骤完成事件
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WS->>MAT: 更新相关物料状态
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MAT->>MAT: 更新PyLabRobot资源
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MAT-->>WS: 更新完成
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WS->>DB: 保存报送记录
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DB-->>WS: 保存完成
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WS-->>HTTP: 返回处理结果
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HTTP->>HTTP: 构造HTTP响应
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HTTP-->>EXT: 200 OK + acknowledgment_id
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Note over EXT,DB: 类似处理sample_finish, order_finish, material_change等报送
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```
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## 6. 错误处理时序图
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```mermaid
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sequenceDiagram
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participant DEV as Device
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participant WS as WorkstationBase
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participant COMM as CommunicationModule
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participant HTTP as HTTPService
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participant EXT as ExternalSystem
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DEV->>WS: 设备错误事件
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WS->>WS: handle_external_error(error_data)
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WS->>WS: 记录错误历史
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alt 关键错误
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WS->>COMM: emergency_stop()
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COMM->>COMM: 发送紧急停止命令
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WS->>WS: 更新workflow_status = ERROR
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else 普通错误
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WS->>WS: 标记动作失败
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WS->>WS: 触发重试逻辑
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end
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WS->>HTTP: 记录错误报送
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HTTP->>EXT: 主动通知错误状态
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WS-->>DEV: 错误处理完成
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```
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## 7. 典型工作站实现示例
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### 7.1 PLC工作站实现
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```python
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class PLCWorkstation(WorkstationBase):
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def _create_communication_module(self):
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return PLCCommunication(self.communication_config)
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def _create_material_management_module(self):
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|
return PyLabRobotMaterialManager(
|
|
self.device_id,
|
|
self.deck_config,
|
|
self.resource_tracker
|
|
)
|
|
|
|
def _register_supported_workflows(self):
|
|
self.supported_workflows = {
|
|
"battery_assembly": WorkflowInfo(...),
|
|
"quality_check": WorkflowInfo(...)
|
|
}
|
|
```
|
|
|
|
### 7.2 报送接收工作站实现
|
|
|
|
```python
|
|
class ReportingWorkstation(WorkstationBase):
|
|
def _create_communication_module(self):
|
|
return DummyCommunication(self.communication_config)
|
|
|
|
def _create_material_management_module(self):
|
|
return SimpleMaterialManager(
|
|
self.device_id,
|
|
self.deck_config,
|
|
self.resource_tracker
|
|
)
|
|
|
|
def _register_supported_workflows(self):
|
|
self.supported_workflows = {
|
|
"data_collection": WorkflowInfo(...),
|
|
"report_processing": WorkflowInfo(...)
|
|
}
|
|
```
|
|
|
|
## 8. 核心接口说明
|
|
|
|
### 8.1 必须实现的抽象方法
|
|
- `_create_communication_module()`: 创建通信模块
|
|
- `_create_material_management_module()`: 创建物料管理模块
|
|
- `_register_supported_workflows()`: 注册支持的工作流
|
|
|
|
### 8.2 可重写的报送处理方法
|
|
- `process_step_finish_report()`: 步骤完成处理
|
|
- `process_sample_finish_report()`: 样本完成处理
|
|
- `process_order_finish_report()`: 订单完成处理
|
|
- `process_material_change_report()`: 物料变更处理
|
|
- `handle_external_error()`: 错误处理
|
|
|
|
### 8.3 工作流控制接口
|
|
- `start_workflow()`: 启动工作流
|
|
- `stop_workflow()`: 停止工作流
|
|
- `get_workflow_status()`: 获取状态
|
|
|
|
## 9. 配置参数说明
|
|
|
|
```python
|
|
workstation_config = {
|
|
"communication_config": {
|
|
"protocol": "modbus_tcp",
|
|
"host": "192.168.1.100",
|
|
"port": 502
|
|
},
|
|
"deck_config": {
|
|
"size_x": 1000.0,
|
|
"size_y": 1000.0,
|
|
"size_z": 500.0
|
|
},
|
|
"http_service_config": {
|
|
"enabled": True,
|
|
"host": "127.0.0.1",
|
|
"port": 8081
|
|
},
|
|
"communication_interfaces": {
|
|
"logical_device_1": CommunicationInterface(...)
|
|
}
|
|
}
|
|
```
|
|
|
|
这个架构设计支持:
|
|
1. **灵活的通信方式**: 通过CommunicationBase支持PLC、串口、以太网等
|
|
2. **多样的物料管理**: 支持PyLabRobot、Bioyond、简单物料系统
|
|
3. **统一的HTTP报送**: 基于LIMS协议的标准化报送接口
|
|
4. **完整的工作流控制**: 支持动态和静态工作流
|
|
5. **强大的错误处理**: 多层次的错误处理和恢复机制
|