mirror of
https://github.com/dptech-corp/Uni-Lab-OS.git
synced 2026-02-04 13:25:13 +00:00
Merge remote-tracking branch 'upstream/dev' into hrdev
This commit is contained in:
334
docs/developer_guide/http_api.md
Normal file
334
docs/developer_guide/http_api.md
Normal file
@@ -0,0 +1,334 @@
|
||||
# HTTP API 指南
|
||||
|
||||
本文档介绍如何通过 HTTP API 与 Uni-Lab-OS 进行交互,包括查询设备、提交任务和获取结果。
|
||||
|
||||
## 概述
|
||||
|
||||
Uni-Lab-OS 提供 RESTful HTTP API,允许外部系统通过标准 HTTP 请求控制实验室设备。API 基于 FastAPI 构建,默认运行在 `http://localhost:8002`。
|
||||
|
||||
### 基础信息
|
||||
|
||||
- **Base URL**: `http://localhost:8002/api/v1`
|
||||
- **Content-Type**: `application/json`
|
||||
- **响应格式**: JSON
|
||||
|
||||
### 通用响应结构
|
||||
|
||||
```json
|
||||
{
|
||||
"code": 0,
|
||||
"data": { ... },
|
||||
"message": "success"
|
||||
}
|
||||
```
|
||||
|
||||
| 字段 | 类型 | 说明 |
|
||||
| --------- | ------ | ------------------ |
|
||||
| `code` | int | 状态码,0 表示成功 |
|
||||
| `data` | object | 响应数据 |
|
||||
| `message` | string | 响应消息 |
|
||||
|
||||
## 快速开始
|
||||
|
||||
以下是一个完整的工作流示例:查询设备 → 获取动作 → 提交任务 → 获取结果。
|
||||
|
||||
### 步骤 1: 获取在线设备
|
||||
|
||||
```bash
|
||||
curl -X GET "http://localhost:8002/api/v1/online-devices"
|
||||
```
|
||||
|
||||
**响应示例**:
|
||||
|
||||
```json
|
||||
{
|
||||
"code": 0,
|
||||
"data": {
|
||||
"online_devices": {
|
||||
"host_node": {
|
||||
"device_key": "/host_node",
|
||||
"namespace": "",
|
||||
"machine_name": "本地",
|
||||
"uuid": "xxx-xxx-xxx",
|
||||
"node_name": "host_node"
|
||||
}
|
||||
},
|
||||
"total_count": 1,
|
||||
"timestamp": 1732612345.123
|
||||
},
|
||||
"message": "success"
|
||||
}
|
||||
```
|
||||
|
||||
### 步骤 2: 获取设备可用动作
|
||||
|
||||
```bash
|
||||
curl -X GET "http://localhost:8002/api/v1/devices/host_node/actions"
|
||||
```
|
||||
|
||||
**响应示例**:
|
||||
|
||||
```json
|
||||
{
|
||||
"code": 0,
|
||||
"data": {
|
||||
"device_id": "host_node",
|
||||
"actions": {
|
||||
"test_latency": {
|
||||
"type_name": "unilabos_msgs.action._empty_in.EmptyIn",
|
||||
"type_name_convert": "unilabos_msgs/action/_empty_in/EmptyIn",
|
||||
"action_path": "/devices/host_node/test_latency",
|
||||
"goal_info": "{}",
|
||||
"is_busy": false,
|
||||
"current_job_id": null
|
||||
},
|
||||
"create_resource": {
|
||||
"type_name": "unilabos_msgs.action._resource_create_from_outer_easy.ResourceCreateFromOuterEasy",
|
||||
"action_path": "/devices/host_node/create_resource",
|
||||
"goal_info": "{res_id: '', device_id: '', class_name: '', ...}",
|
||||
"is_busy": false,
|
||||
"current_job_id": null
|
||||
}
|
||||
},
|
||||
"action_count": 5
|
||||
},
|
||||
"message": "success"
|
||||
}
|
||||
```
|
||||
|
||||
**动作状态字段说明**:
|
||||
|
||||
| 字段 | 说明 |
|
||||
| ---------------- | ----------------------------- |
|
||||
| `type_name` | 动作类型的完整名称 |
|
||||
| `action_path` | ROS2 动作路径 |
|
||||
| `goal_info` | 动作参数模板 |
|
||||
| `is_busy` | 动作是否正在执行 |
|
||||
| `current_job_id` | 当前执行的任务 ID(如果繁忙) |
|
||||
|
||||
### 步骤 3: 提交任务
|
||||
|
||||
```bash
|
||||
curl -X POST "http://localhost:8002/api/v1/job/add" \
|
||||
-H "Content-Type: application/json" \
|
||||
-d '{"device_id":"host_node","action":"test_latency","action_args":{}}'
|
||||
```
|
||||
|
||||
**请求体**:
|
||||
|
||||
```json
|
||||
{
|
||||
"device_id": "host_node",
|
||||
"action": "test_latency",
|
||||
"action_args": {}
|
||||
}
|
||||
```
|
||||
|
||||
**请求参数说明**:
|
||||
|
||||
| 字段 | 类型 | 必填 | 说明 |
|
||||
| ------------- | ------ | ---- | ---------------------------------- |
|
||||
| `device_id` | string | ✓ | 目标设备 ID |
|
||||
| `action` | string | ✓ | 动作名称 |
|
||||
| `action_args` | object | ✓ | 动作参数(根据动作类型不同而变化) |
|
||||
|
||||
**响应示例**:
|
||||
|
||||
```json
|
||||
{
|
||||
"code": 0,
|
||||
"data": {
|
||||
"jobId": "b6acb586-733a-42ab-9f73-55c9a52aa8bd",
|
||||
"status": 1,
|
||||
"result": {}
|
||||
},
|
||||
"message": "success"
|
||||
}
|
||||
```
|
||||
|
||||
**任务状态码**:
|
||||
|
||||
| 状态码 | 含义 | 说明 |
|
||||
| ------ | --------- | ------------------------------ |
|
||||
| 0 | UNKNOWN | 未知状态 |
|
||||
| 1 | ACCEPTED | 任务已接受,等待执行 |
|
||||
| 2 | EXECUTING | 任务执行中 |
|
||||
| 3 | CANCELING | 任务取消中 |
|
||||
| 4 | SUCCEEDED | 任务成功完成 |
|
||||
| 5 | CANCELED | 任务已取消 |
|
||||
| 6 | ABORTED | 任务中止(设备繁忙或执行失败) |
|
||||
|
||||
### 步骤 4: 查询任务状态和结果
|
||||
|
||||
```bash
|
||||
curl -X GET "http://localhost:8002/api/v1/job/b6acb586-733a-42ab-9f73-55c9a52aa8bd/status"
|
||||
```
|
||||
|
||||
**响应示例(执行中)**:
|
||||
|
||||
```json
|
||||
{
|
||||
"code": 0,
|
||||
"data": {
|
||||
"jobId": "b6acb586-733a-42ab-9f73-55c9a52aa8bd",
|
||||
"status": 2,
|
||||
"result": {}
|
||||
},
|
||||
"message": "success"
|
||||
}
|
||||
```
|
||||
|
||||
**响应示例(执行完成)**:
|
||||
|
||||
```json
|
||||
{
|
||||
"code": 0,
|
||||
"data": {
|
||||
"jobId": "b6acb586-733a-42ab-9f73-55c9a52aa8bd",
|
||||
"status": 4,
|
||||
"result": {
|
||||
"error": "",
|
||||
"suc": true,
|
||||
"return_value": {
|
||||
"avg_rtt_ms": 103.99,
|
||||
"avg_time_diff_ms": 7181.55,
|
||||
"max_time_error_ms": 7210.57,
|
||||
"task_delay_ms": -1,
|
||||
"raw_delay_ms": 33.19,
|
||||
"test_count": 5,
|
||||
"status": "success"
|
||||
}
|
||||
}
|
||||
},
|
||||
"message": "success"
|
||||
}
|
||||
```
|
||||
|
||||
> **注意**: 任务结果在首次查询后会被自动删除,请确保保存返回的结果数据。
|
||||
|
||||
## API 端点列表
|
||||
|
||||
### 设备相关
|
||||
|
||||
| 端点 | 方法 | 说明 |
|
||||
| ---------------------------------------------------------- | ---- | ---------------------- |
|
||||
| `/api/v1/online-devices` | GET | 获取在线设备列表 |
|
||||
| `/api/v1/devices` | GET | 获取设备配置 |
|
||||
| `/api/v1/devices/{device_id}/actions` | GET | 获取指定设备的可用动作 |
|
||||
| `/api/v1/devices/{device_id}/actions/{action_name}/schema` | GET | 获取动作参数 Schema |
|
||||
| `/api/v1/actions` | GET | 获取所有设备的可用动作 |
|
||||
|
||||
### 任务相关
|
||||
|
||||
| 端点 | 方法 | 说明 |
|
||||
| ----------------------------- | ---- | ------------------ |
|
||||
| `/api/v1/job/add` | POST | 提交新任务 |
|
||||
| `/api/v1/job/{job_id}/status` | GET | 查询任务状态和结果 |
|
||||
|
||||
### 资源相关
|
||||
|
||||
| 端点 | 方法 | 说明 |
|
||||
| ------------------- | ---- | ------------ |
|
||||
| `/api/v1/resources` | GET | 获取资源列表 |
|
||||
|
||||
## 常见动作示例
|
||||
|
||||
### test_latency - 延迟测试
|
||||
|
||||
测试系统延迟,无需参数。
|
||||
|
||||
```bash
|
||||
curl -X POST "http://localhost:8002/api/v1/job/add" \
|
||||
-H "Content-Type: application/json" \
|
||||
-d '{"device_id":"host_node","action":"test_latency","action_args":{}}'
|
||||
```
|
||||
|
||||
### create_resource - 创建资源
|
||||
|
||||
在设备上创建新资源。
|
||||
|
||||
```bash
|
||||
curl -X POST "http://localhost:8002/api/v1/job/add" \
|
||||
-H "Content-Type: application/json" \
|
||||
-d '{
|
||||
"device_id": "host_node",
|
||||
"action": "create_resource",
|
||||
"action_args": {
|
||||
"res_id": "my_plate",
|
||||
"device_id": "host_node",
|
||||
"class_name": "Plate",
|
||||
"parent": "deck",
|
||||
"bind_locations": {"x": 0, "y": 0, "z": 0}
|
||||
}
|
||||
}'
|
||||
```
|
||||
|
||||
## 错误处理
|
||||
|
||||
### 设备繁忙
|
||||
|
||||
当设备正在执行其他任务时,提交新任务会返回 `status: 6`(ABORTED):
|
||||
|
||||
```json
|
||||
{
|
||||
"code": 0,
|
||||
"data": {
|
||||
"jobId": "xxx",
|
||||
"status": 6,
|
||||
"result": {}
|
||||
},
|
||||
"message": "success"
|
||||
}
|
||||
```
|
||||
|
||||
此时应等待当前任务完成后重试,或使用 `/devices/{device_id}/actions` 检查动作的 `is_busy` 状态。
|
||||
|
||||
### 参数错误
|
||||
|
||||
```json
|
||||
{
|
||||
"code": 2002,
|
||||
"data": { ... },
|
||||
"message": "device_id is required"
|
||||
}
|
||||
```
|
||||
|
||||
## 轮询策略
|
||||
|
||||
推荐的任务状态轮询策略:
|
||||
|
||||
```python
|
||||
import requests
|
||||
import time
|
||||
|
||||
def wait_for_job(job_id, timeout=60, interval=0.5):
|
||||
"""等待任务完成并返回结果"""
|
||||
start_time = time.time()
|
||||
|
||||
while time.time() - start_time < timeout:
|
||||
response = requests.get(f"http://localhost:8002/api/v1/job/{job_id}/status")
|
||||
data = response.json()["data"]
|
||||
|
||||
status = data["status"]
|
||||
if status in (4, 5, 6): # SUCCEEDED, CANCELED, ABORTED
|
||||
return data
|
||||
|
||||
time.sleep(interval)
|
||||
|
||||
raise TimeoutError(f"Job {job_id} did not complete within {timeout} seconds")
|
||||
|
||||
# 使用示例
|
||||
response = requests.post(
|
||||
"http://localhost:8002/api/v1/job/add",
|
||||
json={"device_id": "host_node", "action": "test_latency", "action_args": {}}
|
||||
)
|
||||
job_id = response.json()["data"]["jobId"]
|
||||
result = wait_for_job(job_id)
|
||||
print(result)
|
||||
```
|
||||
|
||||
## 相关文档
|
||||
|
||||
- [设备注册指南](add_device.md)
|
||||
- [动作定义指南](add_action.md)
|
||||
- [网络架构概述](networking_overview.md)
|
||||
@@ -7,3 +7,17 @@ Uni-Lab-OS 是一个开源的实验室自动化操作系统,提供统一的设
|
||||
|
||||
intro.md
|
||||
```
|
||||
|
||||
## 开发者指南
|
||||
|
||||
```{toctree}
|
||||
:maxdepth: 2
|
||||
|
||||
developer_guide/http_api.md
|
||||
developer_guide/networking_overview.md
|
||||
developer_guide/add_device.md
|
||||
developer_guide/add_action.md
|
||||
developer_guide/add_registry.md
|
||||
developer_guide/add_yaml.md
|
||||
developer_guide/action_includes.md
|
||||
```
|
||||
|
||||
BIN
docs/logo.png
BIN
docs/logo.png
Binary file not shown.
|
Before Width: | Height: | Size: 326 KiB After Width: | Height: | Size: 262 KiB |
@@ -218,7 +218,7 @@ def main():
|
||||
|
||||
if hasattr(BasicConfig, "log_level"):
|
||||
logger.info(f"Log level set to '{BasicConfig.log_level}' from config file.")
|
||||
configure_logger(loglevel=BasicConfig.log_level)
|
||||
configure_logger(loglevel=BasicConfig.log_level, working_dir=working_dir)
|
||||
|
||||
if args_dict["addr"] == "test":
|
||||
print_status("使用测试环境地址", "info")
|
||||
@@ -450,13 +450,13 @@ def main():
|
||||
start_backend(**args_dict)
|
||||
start_server(
|
||||
open_browser=not args_dict["disable_browser"],
|
||||
port=args_dict["port"],
|
||||
port=BasicConfig.port,
|
||||
)
|
||||
else:
|
||||
start_backend(**args_dict)
|
||||
start_server(
|
||||
open_browser=not args_dict["disable_browser"],
|
||||
port=args_dict["port"],
|
||||
port=BasicConfig.port,
|
||||
)
|
||||
|
||||
|
||||
|
||||
@@ -51,21 +51,25 @@ class Resp(BaseModel):
|
||||
class JobAddReq(BaseModel):
|
||||
device_id: str = Field(examples=["Gripper"], description="device id")
|
||||
action: str = Field(examples=["_execute_driver_command_async"], description="action name", default="")
|
||||
action_type: str = Field(examples=["unilabos_msgs.action._str_single_input.StrSingleInput"], description="action name", default="")
|
||||
action_args: dict = Field(examples=[{'string': 'string'}], description="action name", default="")
|
||||
task_id: str = Field(examples=["task_id"], description="task uuid")
|
||||
job_id: str = Field(examples=["job_id"], description="goal uuid")
|
||||
node_id: str = Field(examples=["node_id"], description="node uuid")
|
||||
server_info: dict = Field(examples=[{"send_timestamp": 1717000000.0}], description="server info")
|
||||
action_type: str = Field(
|
||||
examples=["unilabos_msgs.action._str_single_input.StrSingleInput"], description="action type", default=""
|
||||
)
|
||||
action_args: dict = Field(examples=[{"string": "string"}], description="action arguments", default_factory=dict)
|
||||
task_id: str = Field(examples=["task_id"], description="task uuid (auto-generated if empty)", default="")
|
||||
job_id: str = Field(examples=["job_id"], description="goal uuid (auto-generated if empty)", default="")
|
||||
node_id: str = Field(examples=["node_id"], description="node uuid", default="")
|
||||
server_info: dict = Field(
|
||||
examples=[{"send_timestamp": 1717000000.0}],
|
||||
description="server info (auto-generated if empty)",
|
||||
default_factory=dict,
|
||||
)
|
||||
|
||||
data: dict = Field(examples=[{"position": 30, "torque": 5, "action": "push_to"}], default={})
|
||||
data: dict = Field(examples=[{"position": 30, "torque": 5, "action": "push_to"}], default_factory=dict)
|
||||
|
||||
|
||||
class JobStepFinishReq(BaseModel):
|
||||
token: str = Field(examples=["030944"], description="token")
|
||||
request_time: str = Field(
|
||||
examples=["2024-12-12 12:12:12.xxx"], description="requestTime"
|
||||
)
|
||||
request_time: str = Field(examples=["2024-12-12 12:12:12.xxx"], description="requestTime")
|
||||
data: dict = Field(
|
||||
examples=[
|
||||
{
|
||||
@@ -83,9 +87,7 @@ class JobStepFinishReq(BaseModel):
|
||||
|
||||
class JobPreintakeFinishReq(BaseModel):
|
||||
token: str = Field(examples=["030944"], description="token")
|
||||
request_time: str = Field(
|
||||
examples=["2024-12-12 12:12:12.xxx"], description="requestTime"
|
||||
)
|
||||
request_time: str = Field(examples=["2024-12-12 12:12:12.xxx"], description="requestTime")
|
||||
data: dict = Field(
|
||||
examples=[
|
||||
{
|
||||
@@ -102,9 +104,7 @@ class JobPreintakeFinishReq(BaseModel):
|
||||
|
||||
class JobFinishReq(BaseModel):
|
||||
token: str = Field(examples=["030944"], description="token")
|
||||
request_time: str = Field(
|
||||
examples=["2024-12-12 12:12:12.xxx"], description="requestTime"
|
||||
)
|
||||
request_time: str = Field(examples=["2024-12-12 12:12:12.xxx"], description="requestTime")
|
||||
data: dict = Field(
|
||||
examples=[
|
||||
{
|
||||
@@ -133,6 +133,10 @@ class JobData(BaseModel):
|
||||
default=0,
|
||||
description="0:UNKNOWN, 1:ACCEPTED, 2:EXECUTING, 3:CANCELING, 4:SUCCEEDED, 5:CANCELED, 6:ABORTED",
|
||||
)
|
||||
result: dict = Field(
|
||||
default_factory=dict,
|
||||
description="Job result data (available when status is SUCCEEDED/CANCELED/ABORTED)",
|
||||
)
|
||||
|
||||
|
||||
class JobStatusResp(Resp):
|
||||
|
||||
@@ -9,13 +9,22 @@ import asyncio
|
||||
|
||||
import yaml
|
||||
|
||||
from unilabos.app.web.controler import devices, job_add, job_info
|
||||
from unilabos.app.web.controller import (
|
||||
devices,
|
||||
job_add,
|
||||
job_info,
|
||||
get_online_devices,
|
||||
get_device_actions,
|
||||
get_action_schema,
|
||||
get_all_available_actions,
|
||||
)
|
||||
from unilabos.app.model import (
|
||||
Resp,
|
||||
RespCode,
|
||||
JobStatusResp,
|
||||
JobAddResp,
|
||||
JobAddReq,
|
||||
JobData,
|
||||
)
|
||||
from unilabos.app.web.utils.host_utils import get_host_node_info
|
||||
from unilabos.registry.registry import lab_registry
|
||||
@@ -1234,6 +1243,65 @@ def get_devices():
|
||||
return Resp(data=dict(data))
|
||||
|
||||
|
||||
@api.get("/online-devices", summary="Online devices list", response_model=Resp)
|
||||
def api_get_online_devices():
|
||||
"""获取在线设备列表
|
||||
|
||||
返回当前在线的设备列表,包含设备ID、命名空间、机器名等信息
|
||||
"""
|
||||
isok, data = get_online_devices()
|
||||
if not isok:
|
||||
return Resp(code=RespCode.ErrorHostNotInit, message=data.get("error", "Unknown error"))
|
||||
|
||||
return Resp(data=data)
|
||||
|
||||
|
||||
@api.get("/devices/{device_id}/actions", summary="Device actions list", response_model=Resp)
|
||||
def api_get_device_actions(device_id: str):
|
||||
"""获取设备可用的动作列表
|
||||
|
||||
Args:
|
||||
device_id: 设备ID
|
||||
|
||||
返回指定设备的所有可用动作,包含动作名称、类型、是否繁忙等信息
|
||||
"""
|
||||
isok, data = get_device_actions(device_id)
|
||||
if not isok:
|
||||
return Resp(code=RespCode.ErrorInvalidReq, message=data.get("error", "Unknown error"))
|
||||
|
||||
return Resp(data=data)
|
||||
|
||||
|
||||
@api.get("/devices/{device_id}/actions/{action_name}/schema", summary="Action schema", response_model=Resp)
|
||||
def api_get_action_schema(device_id: str, action_name: str):
|
||||
"""获取动作的Schema详情
|
||||
|
||||
Args:
|
||||
device_id: 设备ID
|
||||
action_name: 动作名称
|
||||
|
||||
返回动作的参数Schema、默认值、类型等详细信息
|
||||
"""
|
||||
isok, data = get_action_schema(device_id, action_name)
|
||||
if not isok:
|
||||
return Resp(code=RespCode.ErrorInvalidReq, message=data.get("error", "Unknown error"))
|
||||
|
||||
return Resp(data=data)
|
||||
|
||||
|
||||
@api.get("/actions", summary="All available actions", response_model=Resp)
|
||||
def api_get_all_actions():
|
||||
"""获取所有设备的可用动作
|
||||
|
||||
返回所有已注册设备的动作列表,包含设备信息和各动作的状态
|
||||
"""
|
||||
isok, data = get_all_available_actions()
|
||||
if not isok:
|
||||
return Resp(code=RespCode.ErrorHostNotInit, message=data.get("error", "Unknown error"))
|
||||
|
||||
return Resp(data=data)
|
||||
|
||||
|
||||
@api.get("/job/{id}/status", summary="Job status", response_model=JobStatusResp)
|
||||
def job_status(id: str):
|
||||
"""获取任务状态"""
|
||||
@@ -1244,11 +1312,22 @@ def job_status(id: str):
|
||||
@api.post("/job/add", summary="Create job", response_model=JobAddResp)
|
||||
def post_job_add(req: JobAddReq):
|
||||
"""创建任务"""
|
||||
device_id = req.device_id
|
||||
if not req.data:
|
||||
return Resp(code=RespCode.ErrorInvalidReq, message="Invalid request data")
|
||||
# 检查必要参数:device_id 和 action
|
||||
if not req.device_id:
|
||||
return JobAddResp(
|
||||
data=JobData(jobId="", status=6),
|
||||
code=RespCode.ErrorInvalidReq,
|
||||
message="device_id is required",
|
||||
)
|
||||
|
||||
action_name = req.data.get("action", req.action) if req.data else req.action
|
||||
if not action_name:
|
||||
return JobAddResp(
|
||||
data=JobData(jobId="", status=6),
|
||||
code=RespCode.ErrorInvalidReq,
|
||||
message="action is required",
|
||||
)
|
||||
|
||||
req.device_id = device_id
|
||||
data = job_add(req)
|
||||
return JobAddResp(data=data)
|
||||
|
||||
|
||||
@@ -1,45 +0,0 @@
|
||||
|
||||
import json
|
||||
import traceback
|
||||
import uuid
|
||||
from unilabos.app.model import JobAddReq, JobData
|
||||
from unilabos.ros.nodes.presets.host_node import HostNode
|
||||
from unilabos.utils.type_check import serialize_result_info
|
||||
|
||||
|
||||
def get_resources() -> tuple:
|
||||
if HostNode.get_instance() is None:
|
||||
return False, "Host node not initialized"
|
||||
|
||||
return True, HostNode.get_instance().resources_config
|
||||
|
||||
def devices() -> tuple:
|
||||
if HostNode.get_instance() is None:
|
||||
return False, "Host node not initialized"
|
||||
|
||||
return True, HostNode.get_instance().devices_config
|
||||
|
||||
def job_info(id: str):
|
||||
get_goal_status = HostNode.get_instance().get_goal_status(id)
|
||||
return JobData(jobId=id, status=get_goal_status)
|
||||
|
||||
def job_add(req: JobAddReq) -> JobData:
|
||||
if req.job_id is None:
|
||||
req.job_id = str(uuid.uuid4())
|
||||
action_name = req.data["action"]
|
||||
action_type = req.data.get("action_type", "LocalUnknown")
|
||||
action_args = req.data.get("action_kwargs", None) # 兼容老版本,后续删除
|
||||
if action_args is None:
|
||||
action_args = req.data.get("action_args")
|
||||
else:
|
||||
if "command" in action_args:
|
||||
action_args = action_args["command"]
|
||||
# print(f"job_add:{req.device_id} {action_name} {action_kwargs}")
|
||||
try:
|
||||
HostNode.get_instance().send_goal(req.device_id, action_type=action_type, action_name=action_name, action_kwargs=action_args, goal_uuid=req.job_id, server_info=req.server_info)
|
||||
except Exception as e:
|
||||
for bridge in HostNode.get_instance().bridges:
|
||||
traceback.print_exc()
|
||||
if hasattr(bridge, "publish_job_status"):
|
||||
bridge.publish_job_status({}, req.job_id, "failed", serialize_result_info(traceback.format_exc(), False, {}))
|
||||
return JobData(jobId=req.job_id)
|
||||
587
unilabos/app/web/controller.py
Normal file
587
unilabos/app/web/controller.py
Normal file
@@ -0,0 +1,587 @@
|
||||
"""
|
||||
Web API Controller
|
||||
|
||||
提供Web API的控制器函数,处理设备、任务和动作相关的业务逻辑
|
||||
"""
|
||||
|
||||
import threading
|
||||
import time
|
||||
import traceback
|
||||
import uuid
|
||||
from dataclasses import dataclass, field
|
||||
from typing import Optional, Dict, Any, Tuple
|
||||
|
||||
from unilabos.app.model import JobAddReq, JobData
|
||||
from unilabos.ros.nodes.presets.host_node import HostNode
|
||||
from unilabos.utils import logger
|
||||
|
||||
|
||||
@dataclass
|
||||
class JobResult:
|
||||
"""任务结果数据"""
|
||||
|
||||
job_id: str
|
||||
status: int # 4:SUCCEEDED, 5:CANCELED, 6:ABORTED
|
||||
result: Dict[str, Any] = field(default_factory=dict)
|
||||
feedback: Dict[str, Any] = field(default_factory=dict)
|
||||
timestamp: float = field(default_factory=time.time)
|
||||
|
||||
|
||||
class JobResultStore:
|
||||
"""任务结果存储(单例)"""
|
||||
|
||||
_instance: Optional["JobResultStore"] = None
|
||||
_lock = threading.Lock()
|
||||
|
||||
def __init__(self):
|
||||
if not hasattr(self, "_initialized"):
|
||||
self._results: Dict[str, JobResult] = {}
|
||||
self._results_lock = threading.RLock()
|
||||
self._initialized = True
|
||||
|
||||
def __new__(cls):
|
||||
if cls._instance is None:
|
||||
with cls._lock:
|
||||
if cls._instance is None:
|
||||
cls._instance = super().__new__(cls)
|
||||
return cls._instance
|
||||
|
||||
def store_result(
|
||||
self, job_id: str, status: int, result: Optional[Dict[str, Any]], feedback: Optional[Dict[str, Any]] = None
|
||||
):
|
||||
"""存储任务结果"""
|
||||
with self._results_lock:
|
||||
self._results[job_id] = JobResult(
|
||||
job_id=job_id,
|
||||
status=status,
|
||||
result=result or {},
|
||||
feedback=feedback or {},
|
||||
timestamp=time.time(),
|
||||
)
|
||||
logger.debug(f"[JobResultStore] Stored result for job {job_id[:8]}, status={status}")
|
||||
|
||||
def get_and_remove(self, job_id: str) -> Optional[JobResult]:
|
||||
"""获取并删除任务结果"""
|
||||
with self._results_lock:
|
||||
result = self._results.pop(job_id, None)
|
||||
if result:
|
||||
logger.debug(f"[JobResultStore] Retrieved and removed result for job {job_id[:8]}")
|
||||
return result
|
||||
|
||||
def get_result(self, job_id: str) -> Optional[JobResult]:
|
||||
"""仅获取任务结果(不删除)"""
|
||||
with self._results_lock:
|
||||
return self._results.get(job_id)
|
||||
|
||||
def cleanup_old_results(self, max_age_seconds: float = 3600):
|
||||
"""清理过期的结果"""
|
||||
current_time = time.time()
|
||||
with self._results_lock:
|
||||
expired_jobs = [
|
||||
job_id for job_id, result in self._results.items() if current_time - result.timestamp > max_age_seconds
|
||||
]
|
||||
for job_id in expired_jobs:
|
||||
del self._results[job_id]
|
||||
logger.debug(f"[JobResultStore] Cleaned up expired result for job {job_id[:8]}")
|
||||
|
||||
|
||||
# 全局结果存储实例
|
||||
job_result_store = JobResultStore()
|
||||
|
||||
|
||||
def store_job_result(
|
||||
job_id: str, status: str, result: Optional[Dict[str, Any]], feedback: Optional[Dict[str, Any]] = None
|
||||
):
|
||||
"""存储任务结果(供外部调用)
|
||||
|
||||
Args:
|
||||
job_id: 任务ID
|
||||
status: 状态字符串 ("success", "failed", "cancelled")
|
||||
result: 结果数据
|
||||
feedback: 反馈数据
|
||||
"""
|
||||
# 转换状态字符串为整数
|
||||
status_map = {
|
||||
"success": 4, # SUCCEEDED
|
||||
"failed": 6, # ABORTED
|
||||
"cancelled": 5, # CANCELED
|
||||
"running": 2, # EXECUTING
|
||||
}
|
||||
status_int = status_map.get(status, 0)
|
||||
|
||||
# 只存储最终状态
|
||||
if status_int in (4, 5, 6):
|
||||
job_result_store.store_result(job_id, status_int, result, feedback)
|
||||
|
||||
|
||||
def get_resources() -> Tuple[bool, Any]:
|
||||
"""获取资源配置
|
||||
|
||||
Returns:
|
||||
Tuple[bool, Any]: (是否成功, 资源配置或错误信息)
|
||||
"""
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node is None:
|
||||
return False, "Host node not initialized"
|
||||
|
||||
return True, host_node.resources_config
|
||||
|
||||
|
||||
def devices() -> Tuple[bool, Any]:
|
||||
"""获取设备配置
|
||||
|
||||
Returns:
|
||||
Tuple[bool, Any]: (是否成功, 设备配置或错误信息)
|
||||
"""
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node is None:
|
||||
return False, "Host node not initialized"
|
||||
|
||||
return True, host_node.devices_config
|
||||
|
||||
|
||||
def job_info(job_id: str, remove_after_read: bool = True) -> JobData:
|
||||
"""获取任务信息
|
||||
|
||||
Args:
|
||||
job_id: 任务ID
|
||||
remove_after_read: 是否在读取后删除结果(默认True)
|
||||
|
||||
Returns:
|
||||
JobData: 任务数据
|
||||
"""
|
||||
# 首先检查结果存储中是否有已完成的结果
|
||||
if remove_after_read:
|
||||
stored_result = job_result_store.get_and_remove(job_id)
|
||||
else:
|
||||
stored_result = job_result_store.get_result(job_id)
|
||||
|
||||
if stored_result:
|
||||
# 有存储的结果,直接返回
|
||||
return JobData(
|
||||
jobId=job_id,
|
||||
status=stored_result.status,
|
||||
result=stored_result.result,
|
||||
)
|
||||
|
||||
# 没有存储的结果,从 HostNode 获取当前状态
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node is None:
|
||||
return JobData(jobId=job_id, status=0)
|
||||
|
||||
get_goal_status = host_node.get_goal_status(job_id)
|
||||
return JobData(jobId=job_id, status=get_goal_status)
|
||||
|
||||
|
||||
def check_device_action_busy(device_id: str, action_name: str) -> Tuple[bool, Optional[str]]:
|
||||
"""检查设备动作是否正在执行(被占用)
|
||||
|
||||
Args:
|
||||
device_id: 设备ID
|
||||
action_name: 动作名称
|
||||
|
||||
Returns:
|
||||
Tuple[bool, Optional[str]]: (是否繁忙, 当前执行的job_id或None)
|
||||
"""
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node is None:
|
||||
return False, None
|
||||
|
||||
device_action_key = f"/devices/{device_id}/{action_name}"
|
||||
|
||||
# 检查 _device_action_status 中是否有正在执行的任务
|
||||
if device_action_key in host_node._device_action_status:
|
||||
status = host_node._device_action_status[device_action_key]
|
||||
if status.job_ids:
|
||||
# 返回第一个正在执行的job_id
|
||||
current_job_id = next(iter(status.job_ids.keys()), None)
|
||||
return True, current_job_id
|
||||
|
||||
return False, None
|
||||
|
||||
|
||||
def _get_action_type(device_id: str, action_name: str) -> Optional[str]:
|
||||
"""从注册表自动获取动作类型
|
||||
|
||||
Args:
|
||||
device_id: 设备ID
|
||||
action_name: 动作名称
|
||||
|
||||
Returns:
|
||||
动作类型字符串,未找到返回None
|
||||
"""
|
||||
try:
|
||||
from unilabos.ros.nodes.base_device_node import registered_devices
|
||||
|
||||
# 方法1: 从运行时注册设备获取
|
||||
if device_id in registered_devices:
|
||||
device_info = registered_devices[device_id]
|
||||
base_node = device_info.get("base_node_instance")
|
||||
if base_node and hasattr(base_node, "_action_value_mappings"):
|
||||
action_mappings = base_node._action_value_mappings
|
||||
# 尝试直接匹配或 auto- 前缀匹配
|
||||
for key in [action_name, f"auto-{action_name}"]:
|
||||
if key in action_mappings:
|
||||
action_type = action_mappings[key].get("type")
|
||||
if action_type:
|
||||
# 转换为字符串格式
|
||||
if hasattr(action_type, "__module__") and hasattr(action_type, "__name__"):
|
||||
return f"{action_type.__module__}.{action_type.__name__}"
|
||||
return str(action_type)
|
||||
|
||||
# 方法2: 从lab_registry获取
|
||||
from unilabos.registry.registry import lab_registry
|
||||
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node and lab_registry:
|
||||
devices_config = host_node.devices_config
|
||||
device_class = None
|
||||
|
||||
for tree in devices_config.trees:
|
||||
node = tree.root_node
|
||||
if node.res_content.id == device_id:
|
||||
device_class = node.res_content.klass
|
||||
break
|
||||
|
||||
if device_class and device_class in lab_registry.device_type_registry:
|
||||
device_type_info = lab_registry.device_type_registry[device_class]
|
||||
class_info = device_type_info.get("class", {})
|
||||
action_mappings = class_info.get("action_value_mappings", {})
|
||||
|
||||
for key in [action_name, f"auto-{action_name}"]:
|
||||
if key in action_mappings:
|
||||
action_type = action_mappings[key].get("type")
|
||||
if action_type:
|
||||
if hasattr(action_type, "__module__") and hasattr(action_type, "__name__"):
|
||||
return f"{action_type.__module__}.{action_type.__name__}"
|
||||
return str(action_type)
|
||||
|
||||
except Exception as e:
|
||||
logger.warning(f"[Controller] Failed to get action type for {device_id}/{action_name}: {str(e)}")
|
||||
|
||||
return None
|
||||
|
||||
|
||||
def job_add(req: JobAddReq) -> JobData:
|
||||
"""添加任务(检查设备是否繁忙,繁忙则返回失败)
|
||||
|
||||
Args:
|
||||
req: 任务添加请求
|
||||
|
||||
Returns:
|
||||
JobData: 任务数据(包含状态)
|
||||
"""
|
||||
# 服务端自动生成 job_id 和 task_id
|
||||
job_id = str(uuid.uuid4())
|
||||
task_id = str(uuid.uuid4())
|
||||
|
||||
# 服务端自动生成 server_info
|
||||
server_info = {"send_timestamp": time.time()}
|
||||
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node is None:
|
||||
logger.error(f"[Controller] Host node not initialized for job: {job_id[:8]}")
|
||||
return JobData(jobId=job_id, status=6) # 6 = ABORTED
|
||||
|
||||
# 解析动作信息
|
||||
action_name = req.data.get("action", req.action) if req.data else req.action
|
||||
action_args = req.data.get("action_kwargs") or req.data.get("action_args") if req.data else req.action_args
|
||||
|
||||
if action_args is None:
|
||||
action_args = req.action_args or {}
|
||||
elif isinstance(action_args, dict) and "command" in action_args:
|
||||
action_args = action_args["command"]
|
||||
|
||||
# 自动获取 action_type
|
||||
action_type = _get_action_type(req.device_id, action_name)
|
||||
if action_type is None:
|
||||
logger.error(f"[Controller] Action type not found for {req.device_id}/{action_name}")
|
||||
return JobData(jobId=job_id, status=6) # ABORTED
|
||||
|
||||
# 检查设备动作是否繁忙
|
||||
is_busy, current_job_id = check_device_action_busy(req.device_id, action_name)
|
||||
|
||||
if is_busy:
|
||||
logger.warning(
|
||||
f"[Controller] Device action busy: {req.device_id}/{action_name}, "
|
||||
f"current job: {current_job_id[:8] if current_job_id else 'unknown'}"
|
||||
)
|
||||
# 返回失败状态,status=6 表示 ABORTED
|
||||
return JobData(jobId=job_id, status=6)
|
||||
|
||||
# 设备空闲,提交任务执行
|
||||
try:
|
||||
from unilabos.app.ws_client import QueueItem
|
||||
|
||||
device_action_key = f"/devices/{req.device_id}/{action_name}"
|
||||
queue_item = QueueItem(
|
||||
task_type="job_call_back_status",
|
||||
device_id=req.device_id,
|
||||
action_name=action_name,
|
||||
task_id=task_id,
|
||||
job_id=job_id,
|
||||
device_action_key=device_action_key,
|
||||
)
|
||||
|
||||
host_node.send_goal(
|
||||
queue_item,
|
||||
action_type=action_type,
|
||||
action_kwargs=action_args,
|
||||
server_info=server_info,
|
||||
)
|
||||
|
||||
logger.info(f"[Controller] Job submitted: {job_id[:8]} -> {req.device_id}/{action_name}")
|
||||
# 返回已接受状态,status=1 表示 ACCEPTED
|
||||
return JobData(jobId=job_id, status=1)
|
||||
|
||||
except ValueError as e:
|
||||
# ActionClient not found 等错误
|
||||
logger.error(f"[Controller] Action not available: {str(e)}")
|
||||
return JobData(jobId=job_id, status=6) # ABORTED
|
||||
|
||||
except Exception as e:
|
||||
logger.error(f"[Controller] Error submitting job: {str(e)}")
|
||||
traceback.print_exc()
|
||||
return JobData(jobId=job_id, status=6) # ABORTED
|
||||
|
||||
|
||||
def get_online_devices() -> Tuple[bool, Dict[str, Any]]:
|
||||
"""获取在线设备列表
|
||||
|
||||
Returns:
|
||||
Tuple[bool, Dict]: (是否成功, 在线设备信息)
|
||||
"""
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node is None:
|
||||
return False, {"error": "Host node not initialized"}
|
||||
|
||||
try:
|
||||
from unilabos.ros.nodes.base_device_node import registered_devices
|
||||
|
||||
online_devices = {}
|
||||
for device_key in host_node._online_devices:
|
||||
# device_key 格式: "namespace/device_id"
|
||||
parts = device_key.split("/")
|
||||
if len(parts) >= 2:
|
||||
device_id = parts[-1]
|
||||
else:
|
||||
device_id = device_key
|
||||
|
||||
# 获取设备详细信息
|
||||
device_info = registered_devices.get(device_id, {})
|
||||
machine_name = host_node.device_machine_names.get(device_id, "未知")
|
||||
|
||||
online_devices[device_id] = {
|
||||
"device_key": device_key,
|
||||
"namespace": host_node.devices_names.get(device_id, ""),
|
||||
"machine_name": machine_name,
|
||||
"uuid": device_info.get("uuid", "") if device_info else "",
|
||||
"node_name": device_info.get("node_name", "") if device_info else "",
|
||||
}
|
||||
|
||||
return True, {
|
||||
"online_devices": online_devices,
|
||||
"total_count": len(online_devices),
|
||||
"timestamp": time.time(),
|
||||
}
|
||||
|
||||
except Exception as e:
|
||||
logger.error(f"[Controller] Error getting online devices: {str(e)}")
|
||||
traceback.print_exc()
|
||||
return False, {"error": str(e)}
|
||||
|
||||
|
||||
def get_device_actions(device_id: str) -> Tuple[bool, Dict[str, Any]]:
|
||||
"""获取设备可用的动作列表
|
||||
|
||||
Args:
|
||||
device_id: 设备ID
|
||||
|
||||
Returns:
|
||||
Tuple[bool, Dict]: (是否成功, 动作列表信息)
|
||||
"""
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node is None:
|
||||
return False, {"error": "Host node not initialized"}
|
||||
|
||||
try:
|
||||
from unilabos.ros.nodes.base_device_node import registered_devices
|
||||
from unilabos.app.web.utils.action_utils import get_action_info
|
||||
|
||||
# 检查设备是否已注册
|
||||
if device_id not in registered_devices:
|
||||
return False, {"error": f"Device not found: {device_id}"}
|
||||
|
||||
device_info = registered_devices[device_id]
|
||||
actions = device_info.get("actions", {})
|
||||
|
||||
actions_list = {}
|
||||
for action_name, action_server in actions.items():
|
||||
try:
|
||||
action_info = get_action_info(action_server, action_name)
|
||||
# 检查动作是否繁忙
|
||||
is_busy, current_job = check_device_action_busy(device_id, action_name)
|
||||
actions_list[action_name] = {
|
||||
**action_info,
|
||||
"is_busy": is_busy,
|
||||
"current_job_id": current_job[:8] if current_job else None,
|
||||
}
|
||||
except Exception as e:
|
||||
logger.warning(f"[Controller] Error getting action info for {action_name}: {str(e)}")
|
||||
actions_list[action_name] = {
|
||||
"type_name": "unknown",
|
||||
"action_path": f"/devices/{device_id}/{action_name}",
|
||||
"is_busy": False,
|
||||
"error": str(e),
|
||||
}
|
||||
|
||||
return True, {
|
||||
"device_id": device_id,
|
||||
"actions": actions_list,
|
||||
"action_count": len(actions_list),
|
||||
}
|
||||
|
||||
except Exception as e:
|
||||
logger.error(f"[Controller] Error getting device actions: {str(e)}")
|
||||
traceback.print_exc()
|
||||
return False, {"error": str(e)}
|
||||
|
||||
|
||||
def get_action_schema(device_id: str, action_name: str) -> Tuple[bool, Dict[str, Any]]:
|
||||
"""获取动作的Schema详情
|
||||
|
||||
Args:
|
||||
device_id: 设备ID
|
||||
action_name: 动作名称
|
||||
|
||||
Returns:
|
||||
Tuple[bool, Dict]: (是否成功, Schema信息)
|
||||
"""
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node is None:
|
||||
return False, {"error": "Host node not initialized"}
|
||||
|
||||
try:
|
||||
from unilabos.registry.registry import lab_registry
|
||||
from unilabos.ros.nodes.base_device_node import registered_devices
|
||||
|
||||
result = {
|
||||
"device_id": device_id,
|
||||
"action_name": action_name,
|
||||
"schema": None,
|
||||
"goal_default": None,
|
||||
"action_type": None,
|
||||
"is_busy": False,
|
||||
}
|
||||
|
||||
# 检查动作是否繁忙
|
||||
is_busy, current_job = check_device_action_busy(device_id, action_name)
|
||||
result["is_busy"] = is_busy
|
||||
result["current_job_id"] = current_job[:8] if current_job else None
|
||||
|
||||
# 方法1: 从 registered_devices 获取运行时信息
|
||||
if device_id in registered_devices:
|
||||
device_info = registered_devices[device_id]
|
||||
base_node = device_info.get("base_node_instance")
|
||||
|
||||
if base_node and hasattr(base_node, "_action_value_mappings"):
|
||||
action_mappings = base_node._action_value_mappings
|
||||
if action_name in action_mappings:
|
||||
mapping = action_mappings[action_name]
|
||||
result["schema"] = mapping.get("schema")
|
||||
result["goal_default"] = mapping.get("goal_default")
|
||||
result["action_type"] = str(mapping.get("type", ""))
|
||||
|
||||
# 方法2: 从 lab_registry 获取注册表信息(如果运行时没有)
|
||||
if result["schema"] is None and lab_registry:
|
||||
# 尝试查找设备类型
|
||||
devices_config = host_node.devices_config
|
||||
device_class = None
|
||||
|
||||
# 从配置中获取设备类型
|
||||
for tree in devices_config.trees:
|
||||
node = tree.root_node
|
||||
if node.res_content.id == device_id:
|
||||
device_class = node.res_content.klass
|
||||
break
|
||||
|
||||
if device_class and device_class in lab_registry.device_type_registry:
|
||||
device_type_info = lab_registry.device_type_registry[device_class]
|
||||
class_info = device_type_info.get("class", {})
|
||||
action_mappings = class_info.get("action_value_mappings", {})
|
||||
|
||||
# 尝试直接匹配或 auto- 前缀匹配
|
||||
for key in [action_name, f"auto-{action_name}"]:
|
||||
if key in action_mappings:
|
||||
mapping = action_mappings[key]
|
||||
result["schema"] = mapping.get("schema")
|
||||
result["goal_default"] = mapping.get("goal_default")
|
||||
result["action_type"] = str(mapping.get("type", ""))
|
||||
result["handles"] = mapping.get("handles", {})
|
||||
result["placeholder_keys"] = mapping.get("placeholder_keys", {})
|
||||
break
|
||||
|
||||
if result["schema"] is None:
|
||||
return False, {"error": f"Action schema not found: {device_id}/{action_name}"}
|
||||
|
||||
return True, result
|
||||
|
||||
except Exception as e:
|
||||
logger.error(f"[Controller] Error getting action schema: {str(e)}")
|
||||
traceback.print_exc()
|
||||
return False, {"error": str(e)}
|
||||
|
||||
|
||||
def get_all_available_actions() -> Tuple[bool, Dict[str, Any]]:
|
||||
"""获取所有设备的可用动作
|
||||
|
||||
Returns:
|
||||
Tuple[bool, Dict]: (是否成功, 所有设备的动作信息)
|
||||
"""
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node is None:
|
||||
return False, {"error": "Host node not initialized"}
|
||||
|
||||
try:
|
||||
from unilabos.ros.nodes.base_device_node import registered_devices
|
||||
from unilabos.app.web.utils.action_utils import get_action_info
|
||||
|
||||
all_actions = {}
|
||||
total_action_count = 0
|
||||
|
||||
for device_id, device_info in registered_devices.items():
|
||||
actions = device_info.get("actions", {})
|
||||
device_actions = {}
|
||||
|
||||
for action_name, action_server in actions.items():
|
||||
try:
|
||||
action_info = get_action_info(action_server, action_name)
|
||||
is_busy, current_job = check_device_action_busy(device_id, action_name)
|
||||
device_actions[action_name] = {
|
||||
"type_name": action_info.get("type_name", ""),
|
||||
"action_path": action_info.get("action_path", ""),
|
||||
"is_busy": is_busy,
|
||||
"current_job_id": current_job[:8] if current_job else None,
|
||||
}
|
||||
total_action_count += 1
|
||||
except Exception as e:
|
||||
logger.warning(f"[Controller] Error processing action {device_id}/{action_name}: {str(e)}")
|
||||
|
||||
if device_actions:
|
||||
all_actions[device_id] = {
|
||||
"actions": device_actions,
|
||||
"action_count": len(device_actions),
|
||||
"machine_name": host_node.device_machine_names.get(device_id, "未知"),
|
||||
}
|
||||
|
||||
return True, {
|
||||
"devices": all_actions,
|
||||
"device_count": len(all_actions),
|
||||
"total_action_count": total_action_count,
|
||||
"timestamp": time.time(),
|
||||
}
|
||||
|
||||
except Exception as e:
|
||||
logger.error(f"[Controller] Error getting all available actions: {str(e)}")
|
||||
traceback.print_exc()
|
||||
return False, {"error": str(e)}
|
||||
@@ -147,6 +147,9 @@ class LiquidHandlerMiddleware(LiquidHandler):
|
||||
offsets: Optional[List[Coordinate]] = None,
|
||||
**backend_kwargs,
|
||||
):
|
||||
# 如果 use_channels 为 None,使用默认值(所有通道)
|
||||
if use_channels is None:
|
||||
use_channels = list(range(self.channel_num))
|
||||
if not offsets or (isinstance(offsets, list) and len(offsets) != len(use_channels)):
|
||||
offsets = [Coordinate.zero()] * len(use_channels)
|
||||
if self._simulator:
|
||||
@@ -759,7 +762,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
blow_out_air_volume=current_dis_blow_out_air_volume,
|
||||
spread=spread,
|
||||
)
|
||||
if delays is not None:
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
await self.touch_tip(current_targets)
|
||||
await self.discard_tips()
|
||||
@@ -833,17 +836,19 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
if delays is not None:
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
await self.mix(
|
||||
targets=[targets[_]],
|
||||
mix_time=mix_time,
|
||||
mix_vol=mix_vol,
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
if delays is not None:
|
||||
# 只有在 mix_time 有效时才调用 mix
|
||||
if mix_time is not None and mix_time > 0:
|
||||
await self.mix(
|
||||
targets=[targets[_]],
|
||||
mix_time=mix_time,
|
||||
mix_vol=mix_vol,
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
await self.touch_tip(targets[_])
|
||||
await self.discard_tips()
|
||||
@@ -893,18 +898,20 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
blow_out_air_volume=current_dis_blow_out_air_volume,
|
||||
spread=spread,
|
||||
)
|
||||
if delays is not None:
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
|
||||
await self.mix(
|
||||
targets=current_targets,
|
||||
mix_time=mix_time,
|
||||
mix_vol=mix_vol,
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
if delays is not None:
|
||||
# 只有在 mix_time 有效时才调用 mix
|
||||
if mix_time is not None and mix_time > 0:
|
||||
await self.mix(
|
||||
targets=current_targets,
|
||||
mix_time=mix_time,
|
||||
mix_vol=mix_vol,
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
await self.touch_tip(current_targets)
|
||||
await self.discard_tips()
|
||||
@@ -942,60 +949,146 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
delays: Optional[List[int]] = None,
|
||||
none_keys: List[str] = [],
|
||||
):
|
||||
"""Transfer liquid from each *source* well/plate to the corresponding *target*.
|
||||
"""Transfer liquid with automatic mode detection.
|
||||
|
||||
Supports three transfer modes:
|
||||
1. One-to-many (1 source -> N targets): Distribute from one source to multiple targets
|
||||
2. One-to-one (N sources -> N targets): Standard transfer, each source to corresponding target
|
||||
3. Many-to-one (N sources -> 1 target): Combine multiple sources into one target
|
||||
|
||||
Parameters
|
||||
----------
|
||||
asp_vols, dis_vols
|
||||
Single volume (µL) or list matching the number of transfers.
|
||||
Single volume (µL) or list. Automatically expanded based on transfer mode.
|
||||
sources, targets
|
||||
Same‑length sequences of containers (wells or plates). In 96‑well mode
|
||||
each must contain exactly one plate.
|
||||
Containers (wells or plates). Length determines transfer mode:
|
||||
- len(sources) == 1, len(targets) > 1: One-to-many mode
|
||||
- len(sources) == len(targets): One-to-one mode
|
||||
- len(sources) > 1, len(targets) == 1: Many-to-one mode
|
||||
tip_racks
|
||||
One or more TipRacks providing fresh tips.
|
||||
is_96_well
|
||||
Set *True* to use the 96‑channel head.
|
||||
"""
|
||||
|
||||
|
||||
|
||||
# 确保 use_channels 有默认值
|
||||
if use_channels is None:
|
||||
use_channels = [0] if self.channel_num >= 1 else list(range(self.channel_num))
|
||||
|
||||
if is_96_well:
|
||||
pass # This mode is not verified.
|
||||
else:
|
||||
if len(asp_vols) != len(targets):
|
||||
raise ValueError(f"Length of `asp_vols` {len(asp_vols)} must match `targets` {len(targets)}.")
|
||||
# 转换体积参数为列表
|
||||
if isinstance(asp_vols, (int, float)):
|
||||
asp_vols = [float(asp_vols)]
|
||||
else:
|
||||
asp_vols = [float(v) for v in asp_vols]
|
||||
|
||||
if isinstance(dis_vols, (int, float)):
|
||||
dis_vols = [float(dis_vols)]
|
||||
else:
|
||||
dis_vols = [float(v) for v in dis_vols]
|
||||
|
||||
# 识别传输模式
|
||||
num_sources = len(sources)
|
||||
num_targets = len(targets)
|
||||
|
||||
if num_sources == 1 and num_targets > 1:
|
||||
# 模式1: 一对多 (1 source -> N targets)
|
||||
await self._transfer_one_to_many(
|
||||
sources[0], targets, tip_racks, use_channels,
|
||||
asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
|
||||
offsets, touch_tip, liquid_height, blow_out_air_volume,
|
||||
spread, mix_stage, mix_times, mix_vol, mix_rate,
|
||||
mix_liquid_height, delays
|
||||
)
|
||||
elif num_sources > 1 and num_targets == 1:
|
||||
# 模式2: 多对一 (N sources -> 1 target)
|
||||
await self._transfer_many_to_one(
|
||||
sources, targets[0], tip_racks, use_channels,
|
||||
asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
|
||||
offsets, touch_tip, liquid_height, blow_out_air_volume,
|
||||
spread, mix_stage, mix_times, mix_vol, mix_rate,
|
||||
mix_liquid_height, delays
|
||||
)
|
||||
elif num_sources == num_targets:
|
||||
# 模式3: 一对一 (N sources -> N targets) - 原有逻辑
|
||||
await self._transfer_one_to_one(
|
||||
sources, targets, tip_racks, use_channels,
|
||||
asp_vols, dis_vols, asp_flow_rates, dis_flow_rates,
|
||||
offsets, touch_tip, liquid_height, blow_out_air_volume,
|
||||
spread, mix_stage, mix_times, mix_vol, mix_rate,
|
||||
mix_liquid_height, delays
|
||||
)
|
||||
else:
|
||||
raise ValueError(
|
||||
f"Unsupported transfer mode: {num_sources} sources -> {num_targets} targets. "
|
||||
"Supported modes: 1->N, N->1, or N->N."
|
||||
)
|
||||
|
||||
# 首先应该对任务分组,然后每次1个/8个进行操作处理
|
||||
if len(use_channels) == 1:
|
||||
for _ in range(len(targets)):
|
||||
tip = []
|
||||
for ___ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
async def _transfer_one_to_one(
|
||||
self,
|
||||
sources: Sequence[Container],
|
||||
targets: Sequence[Container],
|
||||
tip_racks: Sequence[TipRack],
|
||||
use_channels: List[int],
|
||||
asp_vols: List[float],
|
||||
dis_vols: List[float],
|
||||
asp_flow_rates: Optional[List[Optional[float]]],
|
||||
dis_flow_rates: Optional[List[Optional[float]]],
|
||||
offsets: Optional[List[Coordinate]],
|
||||
touch_tip: bool,
|
||||
liquid_height: Optional[List[Optional[float]]],
|
||||
blow_out_air_volume: Optional[List[Optional[float]]],
|
||||
spread: Literal["wide", "tight", "custom"],
|
||||
mix_stage: Optional[Literal["none", "before", "after", "both"]],
|
||||
mix_times: Optional[int],
|
||||
mix_vol: Optional[int],
|
||||
mix_rate: Optional[int],
|
||||
mix_liquid_height: Optional[float],
|
||||
delays: Optional[List[int]],
|
||||
):
|
||||
"""一对一传输模式:N sources -> N targets"""
|
||||
# 验证参数长度
|
||||
if len(asp_vols) != len(targets):
|
||||
raise ValueError(f"Length of `asp_vols` {len(asp_vols)} must match `targets` {len(targets)}.")
|
||||
if len(dis_vols) != len(targets):
|
||||
raise ValueError(f"Length of `dis_vols` {len(dis_vols)} must match `targets` {len(targets)}.")
|
||||
if len(sources) != len(targets):
|
||||
raise ValueError(f"Length of `sources` {len(sources)} must match `targets` {len(targets)}.")
|
||||
|
||||
await self.aspirate(
|
||||
resources=[sources[_]],
|
||||
vols=[asp_vols[_]],
|
||||
use_channels=use_channels,
|
||||
flow_rates=[asp_flow_rates[0]] if asp_flow_rates else None,
|
||||
offsets=[offsets[0]] if offsets else None,
|
||||
liquid_height=[liquid_height[0]] if liquid_height else None,
|
||||
blow_out_air_volume=[blow_out_air_volume[0]] if blow_out_air_volume else None,
|
||||
spread=spread,
|
||||
)
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[0])
|
||||
await self.dispense(
|
||||
resources=[targets[_]],
|
||||
vols=[dis_vols[_]],
|
||||
use_channels=use_channels,
|
||||
flow_rates=[dis_flow_rates[1]] if dis_flow_rates else None,
|
||||
offsets=[offsets[1]] if offsets else None,
|
||||
blow_out_air_volume=[blow_out_air_volume[1]] if blow_out_air_volume else None,
|
||||
liquid_height=[liquid_height[1]] if liquid_height else None,
|
||||
spread=spread,
|
||||
)
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
if len(use_channels) == 1:
|
||||
for _ in range(len(targets)):
|
||||
tip = []
|
||||
for ___ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
|
||||
await self.aspirate(
|
||||
resources=[sources[_]],
|
||||
vols=[asp_vols[_]],
|
||||
use_channels=use_channels,
|
||||
flow_rates=[asp_flow_rates[_]] if asp_flow_rates and len(asp_flow_rates) > _ else None,
|
||||
offsets=[offsets[_]] if offsets and len(offsets) > _ else None,
|
||||
liquid_height=[liquid_height[_]] if liquid_height and len(liquid_height) > _ else None,
|
||||
blow_out_air_volume=[blow_out_air_volume[_]] if blow_out_air_volume and len(blow_out_air_volume) > _ else None,
|
||||
spread=spread,
|
||||
)
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[0])
|
||||
await self.dispense(
|
||||
resources=[targets[_]],
|
||||
vols=[dis_vols[_]],
|
||||
use_channels=use_channels,
|
||||
flow_rates=[dis_flow_rates[_]] if dis_flow_rates and len(dis_flow_rates) > _ else None,
|
||||
offsets=[offsets[_]] if offsets and len(offsets) > _ else None,
|
||||
blow_out_air_volume=[blow_out_air_volume[_]] if blow_out_air_volume and len(blow_out_air_volume) > _ else None,
|
||||
liquid_height=[liquid_height[_]] if liquid_height and len(liquid_height) > _ else None,
|
||||
spread=spread,
|
||||
)
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
|
||||
await self.mix(
|
||||
targets=[targets[_]],
|
||||
mix_time=mix_times,
|
||||
@@ -1004,63 +1097,60 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
await self.touch_tip(targets[_])
|
||||
await self.discard_tips()
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
await self.touch_tip(targets[_])
|
||||
await self.discard_tips(use_channels=use_channels)
|
||||
|
||||
elif len(use_channels) == 8:
|
||||
# 对于8个的情况,需要判断此时任务是不是能被8通道移液站来成功处理
|
||||
if len(targets) % 8 != 0:
|
||||
raise ValueError(f"Length of `targets` {len(targets)} must be a multiple of 8 for 8-channel mode.")
|
||||
elif len(use_channels) == 8:
|
||||
if len(targets) % 8 != 0:
|
||||
raise ValueError(f"Length of `targets` {len(targets)} must be a multiple of 8 for 8-channel mode.")
|
||||
|
||||
# 8个8个来取任务序列
|
||||
for i in range(0, len(targets), 8):
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
current_targets = targets[i:i + 8]
|
||||
current_reagent_sources = sources[i:i + 8]
|
||||
current_asp_vols = asp_vols[i:i + 8]
|
||||
current_dis_vols = dis_vols[i:i + 8]
|
||||
current_asp_flow_rates = asp_flow_rates[i:i + 8] if asp_flow_rates else None
|
||||
current_asp_offset = offsets[i:i + 8] if offsets else [None] * 8
|
||||
current_dis_offset = offsets[i:i + 8] if offsets else [None] * 8
|
||||
current_asp_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
|
||||
current_dis_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
|
||||
current_asp_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
|
||||
current_dis_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
|
||||
current_dis_flow_rates = dis_flow_rates[i:i + 8] if dis_flow_rates else None
|
||||
|
||||
for i in range(0, len(targets), 8):
|
||||
# 取出8个任务
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
current_targets = targets[i:i + 8]
|
||||
current_reagent_sources = sources[i:i + 8]
|
||||
current_asp_vols = asp_vols[i:i + 8]
|
||||
current_dis_vols = dis_vols[i:i + 8]
|
||||
current_asp_flow_rates = asp_flow_rates[i:i + 8]
|
||||
current_asp_offset = offsets[i:i + 8] if offsets else [None] * 8
|
||||
current_dis_offset = offsets[-i*8-8:len(offsets)-i*8] if offsets else [None] * 8
|
||||
current_asp_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
|
||||
current_dis_liquid_height = liquid_height[-i*8-8:len(liquid_height)-i*8] if liquid_height else [None] * 8
|
||||
current_asp_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
|
||||
current_dis_blow_out_air_volume = blow_out_air_volume[-i*8-8:len(blow_out_air_volume)-i*8] if blow_out_air_volume else [None] * 8
|
||||
current_dis_flow_rates = dis_flow_rates[i:i + 8] if dis_flow_rates else [None] * 8
|
||||
await self.aspirate(
|
||||
resources=current_reagent_sources,
|
||||
vols=current_asp_vols,
|
||||
use_channels=use_channels,
|
||||
flow_rates=current_asp_flow_rates,
|
||||
offsets=current_asp_offset,
|
||||
blow_out_air_volume=current_asp_blow_out_air_volume,
|
||||
liquid_height=current_asp_liquid_height,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
await self.aspirate(
|
||||
resources=current_reagent_sources,
|
||||
vols=current_asp_vols,
|
||||
use_channels=use_channels,
|
||||
flow_rates=current_asp_flow_rates,
|
||||
offsets=current_asp_offset,
|
||||
blow_out_air_volume=current_asp_blow_out_air_volume,
|
||||
liquid_height=current_asp_liquid_height,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[0])
|
||||
await self.dispense(
|
||||
resources=current_targets,
|
||||
vols=current_dis_vols,
|
||||
use_channels=use_channels,
|
||||
flow_rates=current_dis_flow_rates,
|
||||
offsets=current_dis_offset,
|
||||
blow_out_air_volume=current_dis_blow_out_air_volume,
|
||||
liquid_height=current_dis_liquid_height,
|
||||
spread=spread,
|
||||
)
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[0])
|
||||
await self.dispense(
|
||||
resources=current_targets,
|
||||
vols=current_dis_vols,
|
||||
use_channels=use_channels,
|
||||
flow_rates=current_dis_flow_rates,
|
||||
offsets=current_dis_offset,
|
||||
blow_out_air_volume=current_dis_blow_out_air_volume,
|
||||
liquid_height=current_dis_liquid_height,
|
||||
spread=spread,
|
||||
)
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
|
||||
if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
|
||||
await self.mix(
|
||||
targets=current_targets,
|
||||
mix_time=mix_times,
|
||||
@@ -1069,10 +1159,363 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
await self.touch_tip(current_targets)
|
||||
await self.discard_tips([0,1,2,3,4,5,6,7])
|
||||
|
||||
async def _transfer_one_to_many(
|
||||
self,
|
||||
source: Container,
|
||||
targets: Sequence[Container],
|
||||
tip_racks: Sequence[TipRack],
|
||||
use_channels: List[int],
|
||||
asp_vols: List[float],
|
||||
dis_vols: List[float],
|
||||
asp_flow_rates: Optional[List[Optional[float]]],
|
||||
dis_flow_rates: Optional[List[Optional[float]]],
|
||||
offsets: Optional[List[Coordinate]],
|
||||
touch_tip: bool,
|
||||
liquid_height: Optional[List[Optional[float]]],
|
||||
blow_out_air_volume: Optional[List[Optional[float]]],
|
||||
spread: Literal["wide", "tight", "custom"],
|
||||
mix_stage: Optional[Literal["none", "before", "after", "both"]],
|
||||
mix_times: Optional[int],
|
||||
mix_vol: Optional[int],
|
||||
mix_rate: Optional[int],
|
||||
mix_liquid_height: Optional[float],
|
||||
delays: Optional[List[int]],
|
||||
):
|
||||
"""一对多传输模式:1 source -> N targets"""
|
||||
# 验证和扩展体积参数
|
||||
if len(asp_vols) == 1:
|
||||
# 如果只提供一个吸液体积,计算总吸液体积(所有分液体积之和)
|
||||
total_asp_vol = sum(dis_vols)
|
||||
asp_vol = asp_vols[0] if asp_vols[0] >= total_asp_vol else total_asp_vol
|
||||
else:
|
||||
raise ValueError("For one-to-many mode, `asp_vols` should be a single value or list with one element.")
|
||||
|
||||
if len(dis_vols) != len(targets):
|
||||
raise ValueError(f"Length of `dis_vols` {len(dis_vols)} must match `targets` {len(targets)}.")
|
||||
|
||||
if len(use_channels) == 1:
|
||||
# 单通道模式:一次吸液,多次分液
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
|
||||
# 从源容器吸液(总体积)
|
||||
await self.aspirate(
|
||||
resources=[source],
|
||||
vols=[asp_vol],
|
||||
use_channels=use_channels,
|
||||
flow_rates=[asp_flow_rates[0]] if asp_flow_rates and len(asp_flow_rates) > 0 else None,
|
||||
offsets=[offsets[0]] if offsets and len(offsets) > 0 else None,
|
||||
liquid_height=[liquid_height[0]] if liquid_height and len(liquid_height) > 0 else None,
|
||||
blow_out_air_volume=[blow_out_air_volume[0]] if blow_out_air_volume and len(blow_out_air_volume) > 0 else None,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[0])
|
||||
|
||||
# 分多次分液到不同的目标容器
|
||||
for idx, target in enumerate(targets):
|
||||
await self.dispense(
|
||||
resources=[target],
|
||||
vols=[dis_vols[idx]],
|
||||
use_channels=use_channels,
|
||||
flow_rates=[dis_flow_rates[idx]] if dis_flow_rates and len(dis_flow_rates) > idx else None,
|
||||
offsets=[offsets[idx]] if offsets and len(offsets) > idx else None,
|
||||
blow_out_air_volume=[blow_out_air_volume[idx]] if blow_out_air_volume and len(blow_out_air_volume) > idx else None,
|
||||
liquid_height=[liquid_height[idx]] if liquid_height and len(liquid_height) > idx else None,
|
||||
spread=spread,
|
||||
)
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
|
||||
await self.mix(
|
||||
targets=[target],
|
||||
mix_time=mix_times,
|
||||
mix_vol=mix_vol,
|
||||
offsets=offsets[idx:idx+1] if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
if touch_tip:
|
||||
await self.touch_tip([target])
|
||||
|
||||
await self.discard_tips(use_channels=use_channels)
|
||||
|
||||
elif len(use_channels) == 8:
|
||||
# 8通道模式:需要确保目标数量是8的倍数
|
||||
if len(targets) % 8 != 0:
|
||||
raise ValueError(f"For 8-channel mode, number of targets {len(targets)} must be a multiple of 8.")
|
||||
|
||||
# 每次处理8个目标
|
||||
for i in range(0, len(targets), 8):
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
|
||||
current_targets = targets[i:i + 8]
|
||||
current_dis_vols = dis_vols[i:i + 8]
|
||||
|
||||
# 8个通道都从同一个源容器吸液,每个通道的吸液体积等于对应的分液体积
|
||||
current_asp_flow_rates = asp_flow_rates[0:1] * 8 if asp_flow_rates and len(asp_flow_rates) > 0 else None
|
||||
current_asp_offset = offsets[0:1] * 8 if offsets and len(offsets) > 0 else [None] * 8
|
||||
current_asp_liquid_height = liquid_height[0:1] * 8 if liquid_height and len(liquid_height) > 0 else [None] * 8
|
||||
current_asp_blow_out_air_volume = blow_out_air_volume[0:1] * 8 if blow_out_air_volume and len(blow_out_air_volume) > 0 else [None] * 8
|
||||
|
||||
# 从源容器吸液(8个通道都从同一个源,但每个通道的吸液体积不同)
|
||||
await self.aspirate(
|
||||
resources=[source] * 8, # 8个通道都从同一个源
|
||||
vols=current_dis_vols, # 每个通道的吸液体积等于对应的分液体积
|
||||
use_channels=use_channels,
|
||||
flow_rates=current_asp_flow_rates,
|
||||
offsets=current_asp_offset,
|
||||
liquid_height=current_asp_liquid_height,
|
||||
blow_out_air_volume=current_asp_blow_out_air_volume,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[0])
|
||||
|
||||
# 分液到8个目标
|
||||
current_dis_flow_rates = dis_flow_rates[i:i + 8] if dis_flow_rates else None
|
||||
current_dis_offset = offsets[i:i + 8] if offsets else [None] * 8
|
||||
current_dis_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
|
||||
current_dis_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
|
||||
|
||||
await self.dispense(
|
||||
resources=current_targets,
|
||||
vols=current_dis_vols,
|
||||
use_channels=use_channels,
|
||||
flow_rates=current_dis_flow_rates,
|
||||
offsets=current_dis_offset,
|
||||
blow_out_air_volume=current_dis_blow_out_air_volume,
|
||||
liquid_height=current_dis_liquid_height,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
|
||||
if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
|
||||
await self.mix(
|
||||
targets=current_targets,
|
||||
mix_time=mix_times,
|
||||
mix_vol=mix_vol,
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
|
||||
if touch_tip:
|
||||
await self.touch_tip(current_targets)
|
||||
await self.discard_tips([0,1,2,3,4,5,6,7])
|
||||
|
||||
await self.discard_tips([0,1,2,3,4,5,6,7])
|
||||
|
||||
async def _transfer_many_to_one(
|
||||
self,
|
||||
sources: Sequence[Container],
|
||||
target: Container,
|
||||
tip_racks: Sequence[TipRack],
|
||||
use_channels: List[int],
|
||||
asp_vols: List[float],
|
||||
dis_vols: List[float],
|
||||
asp_flow_rates: Optional[List[Optional[float]]],
|
||||
dis_flow_rates: Optional[List[Optional[float]]],
|
||||
offsets: Optional[List[Coordinate]],
|
||||
touch_tip: bool,
|
||||
liquid_height: Optional[List[Optional[float]]],
|
||||
blow_out_air_volume: Optional[List[Optional[float]]],
|
||||
spread: Literal["wide", "tight", "custom"],
|
||||
mix_stage: Optional[Literal["none", "before", "after", "both"]],
|
||||
mix_times: Optional[int],
|
||||
mix_vol: Optional[int],
|
||||
mix_rate: Optional[int],
|
||||
mix_liquid_height: Optional[float],
|
||||
delays: Optional[List[int]],
|
||||
):
|
||||
"""多对一传输模式:N sources -> 1 target(汇总/混合)"""
|
||||
# 验证和扩展体积参数
|
||||
if len(asp_vols) != len(sources):
|
||||
raise ValueError(f"Length of `asp_vols` {len(asp_vols)} must match `sources` {len(sources)}.")
|
||||
|
||||
# 支持两种模式:
|
||||
# 1. dis_vols 为单个值:所有源汇总,使用总吸液体积或指定分液体积
|
||||
# 2. dis_vols 长度等于 asp_vols:每个源按不同比例分液(按比例混合)
|
||||
if len(dis_vols) == 1:
|
||||
# 模式1:使用单个分液体积
|
||||
total_dis_vol = sum(asp_vols)
|
||||
dis_vol = dis_vols[0] if dis_vols[0] >= total_dis_vol else total_dis_vol
|
||||
use_proportional_mixing = False
|
||||
elif len(dis_vols) == len(asp_vols):
|
||||
# 模式2:按不同比例混合
|
||||
use_proportional_mixing = True
|
||||
else:
|
||||
raise ValueError(
|
||||
f"For many-to-one mode, `dis_vols` should be a single value or list with length {len(asp_vols)} "
|
||||
f"(matching `asp_vols`). Got length {len(dis_vols)}."
|
||||
)
|
||||
|
||||
if len(use_channels) == 1:
|
||||
# 单通道模式:多次吸液,一次分液
|
||||
# 先混合前(如果需要)
|
||||
if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
|
||||
# 注意:在吸液前混合源容器通常不常见,这里跳过
|
||||
pass
|
||||
|
||||
# 从每个源容器吸液并分液到目标容器
|
||||
for idx, source in enumerate(sources):
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
|
||||
await self.aspirate(
|
||||
resources=[source],
|
||||
vols=[asp_vols[idx]],
|
||||
use_channels=use_channels,
|
||||
flow_rates=[asp_flow_rates[idx]] if asp_flow_rates and len(asp_flow_rates) > idx else None,
|
||||
offsets=[offsets[idx]] if offsets and len(offsets) > idx else None,
|
||||
liquid_height=[liquid_height[idx]] if liquid_height and len(liquid_height) > idx else None,
|
||||
blow_out_air_volume=[blow_out_air_volume[idx]] if blow_out_air_volume and len(blow_out_air_volume) > idx else None,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[0])
|
||||
|
||||
# 分液到目标容器
|
||||
if use_proportional_mixing:
|
||||
# 按不同比例混合:使用对应的 dis_vols
|
||||
dis_vol = dis_vols[idx]
|
||||
dis_flow_rate = dis_flow_rates[idx] if dis_flow_rates and len(dis_flow_rates) > idx else None
|
||||
dis_offset = offsets[idx] if offsets and len(offsets) > idx else None
|
||||
dis_liquid_height = liquid_height[idx] if liquid_height and len(liquid_height) > idx else None
|
||||
dis_blow_out = blow_out_air_volume[idx] if blow_out_air_volume and len(blow_out_air_volume) > idx else None
|
||||
else:
|
||||
# 标准模式:分液体积等于吸液体积
|
||||
dis_vol = asp_vols[idx]
|
||||
dis_flow_rate = dis_flow_rates[0] if dis_flow_rates and len(dis_flow_rates) > 0 else None
|
||||
dis_offset = offsets[0] if offsets and len(offsets) > 0 else None
|
||||
dis_liquid_height = liquid_height[0] if liquid_height and len(liquid_height) > 0 else None
|
||||
dis_blow_out = blow_out_air_volume[0] if blow_out_air_volume and len(blow_out_air_volume) > 0 else None
|
||||
|
||||
await self.dispense(
|
||||
resources=[target],
|
||||
vols=[dis_vol],
|
||||
use_channels=use_channels,
|
||||
flow_rates=[dis_flow_rate] if dis_flow_rate is not None else None,
|
||||
offsets=[dis_offset] if dis_offset is not None else None,
|
||||
blow_out_air_volume=[dis_blow_out] if dis_blow_out is not None else None,
|
||||
liquid_height=[dis_liquid_height] if dis_liquid_height is not None else None,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
|
||||
await self.discard_tips(use_channels=use_channels)
|
||||
|
||||
# 最后在目标容器中混合(如果需要)
|
||||
if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
|
||||
await self.mix(
|
||||
targets=[target],
|
||||
mix_time=mix_times,
|
||||
mix_vol=mix_vol,
|
||||
offsets=offsets[0:1] if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
|
||||
if touch_tip:
|
||||
await self.touch_tip([target])
|
||||
|
||||
elif len(use_channels) == 8:
|
||||
# 8通道模式:需要确保源数量是8的倍数
|
||||
if len(sources) % 8 != 0:
|
||||
raise ValueError(f"For 8-channel mode, number of sources {len(sources)} must be a multiple of 8.")
|
||||
|
||||
# 每次处理8个源
|
||||
for i in range(0, len(sources), 8):
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
|
||||
current_sources = sources[i:i + 8]
|
||||
current_asp_vols = asp_vols[i:i + 8]
|
||||
current_asp_flow_rates = asp_flow_rates[i:i + 8] if asp_flow_rates else None
|
||||
current_asp_offset = offsets[i:i + 8] if offsets else [None] * 8
|
||||
current_asp_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
|
||||
current_asp_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
|
||||
|
||||
# 从8个源容器吸液
|
||||
await self.aspirate(
|
||||
resources=current_sources,
|
||||
vols=current_asp_vols,
|
||||
use_channels=use_channels,
|
||||
flow_rates=current_asp_flow_rates,
|
||||
offsets=current_asp_offset,
|
||||
blow_out_air_volume=current_asp_blow_out_air_volume,
|
||||
liquid_height=current_asp_liquid_height,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[0])
|
||||
|
||||
# 分液到目标容器(每个通道分液到同一个目标)
|
||||
if use_proportional_mixing:
|
||||
# 按比例混合:使用对应的 dis_vols
|
||||
current_dis_vols = dis_vols[i:i + 8]
|
||||
current_dis_flow_rates = dis_flow_rates[i:i + 8] if dis_flow_rates else None
|
||||
current_dis_offset = offsets[i:i + 8] if offsets else [None] * 8
|
||||
current_dis_liquid_height = liquid_height[i:i + 8] if liquid_height else [None] * 8
|
||||
current_dis_blow_out_air_volume = blow_out_air_volume[i:i + 8] if blow_out_air_volume else [None] * 8
|
||||
else:
|
||||
# 标准模式:每个通道分液体积等于其吸液体积
|
||||
current_dis_vols = current_asp_vols
|
||||
current_dis_flow_rates = dis_flow_rates[0:1] * 8 if dis_flow_rates else None
|
||||
current_dis_offset = offsets[0:1] * 8 if offsets else [None] * 8
|
||||
current_dis_liquid_height = liquid_height[0:1] * 8 if liquid_height else [None] * 8
|
||||
current_dis_blow_out_air_volume = blow_out_air_volume[0:1] * 8 if blow_out_air_volume else [None] * 8
|
||||
|
||||
await self.dispense(
|
||||
resources=[target] * 8, # 8个通道都分到同一个目标
|
||||
vols=current_dis_vols,
|
||||
use_channels=use_channels,
|
||||
flow_rates=current_dis_flow_rates,
|
||||
offsets=current_dis_offset,
|
||||
blow_out_air_volume=current_dis_blow_out_air_volume,
|
||||
liquid_height=current_dis_liquid_height,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
|
||||
await self.discard_tips([0,1,2,3,4,5,6,7])
|
||||
|
||||
# 最后在目标容器中混合(如果需要)
|
||||
if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
|
||||
await self.mix(
|
||||
targets=[target],
|
||||
mix_time=mix_times,
|
||||
mix_vol=mix_vol,
|
||||
offsets=offsets[0:1] if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
)
|
||||
|
||||
if touch_tip:
|
||||
await self.touch_tip([target])
|
||||
|
||||
# except Exception as e:
|
||||
# traceback.print_exc()
|
||||
|
||||
@@ -7,7 +7,7 @@ class VirtualMultiwayValve:
|
||||
"""
|
||||
虚拟九通阀门 - 0号位连接transfer pump,1-8号位连接其他设备 🔄
|
||||
"""
|
||||
def __init__(self, port: str = "VIRTUAL", positions: int = 8):
|
||||
def __init__(self, port: str = "VIRTUAL", positions: int = 8, **kwargs):
|
||||
self.port = port
|
||||
self.max_positions = positions # 1-8号位
|
||||
self.total_positions = positions + 1 # 0-8号位,共9个位置
|
||||
|
||||
@@ -2,6 +2,7 @@ from datetime import datetime
|
||||
import json
|
||||
import time
|
||||
from typing import Optional, Dict, Any, List
|
||||
from typing_extensions import TypedDict
|
||||
import requests
|
||||
import pint
|
||||
from unilabos.devices.workstation.bioyond_studio.config import API_CONFIG
|
||||
@@ -14,6 +15,14 @@ import sys
|
||||
from pathlib import Path
|
||||
import importlib
|
||||
|
||||
class ComputeExperimentDesignReturn(TypedDict):
|
||||
solutions: list
|
||||
titration: dict
|
||||
solvents: dict
|
||||
feeding_order: list
|
||||
return_info: str
|
||||
|
||||
|
||||
class BioyondDispensingStation(BioyondWorkstation):
|
||||
def __init__(
|
||||
self,
|
||||
@@ -138,85 +147,20 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
wt_percent: str = "0.25",
|
||||
m_tot: str = "70",
|
||||
titration_percent: str = "0.03",
|
||||
) -> dict:
|
||||
"""计算实验设计参数
|
||||
|
||||
参数:
|
||||
ratio: 化合物配比,支持多种格式:
|
||||
1. 简化格式(推荐): "MDA:0.5,PAPP:0.5,BTDA:0.95"
|
||||
2. JSON字符串: '{"MDA": 1, "BTDA": 0.95, "PAPP": 1}'
|
||||
3. Python字典: {"MDA": 1, "BTDA": 0.95, "PAPP": 1}
|
||||
wt_percent: 固体重量百分比,默认 0.25
|
||||
m_tot: 反应混合物总质量(g),默认 70
|
||||
titration_percent: 滴定溶液百分比,默认 0.03
|
||||
|
||||
返回:
|
||||
包含实验设计参数的字典
|
||||
"""
|
||||
) -> ComputeExperimentDesignReturn:
|
||||
try:
|
||||
# 1. 参数解析和验证
|
||||
original_ratio = ratio
|
||||
|
||||
if isinstance(ratio, str):
|
||||
# 尝试解析简化格式: "MDA:0.5,PAPP:0.5,BTDA:0.95"
|
||||
if ':' in ratio and ',' in ratio:
|
||||
try:
|
||||
ratio_dict = {}
|
||||
pairs = ratio.split(',')
|
||||
for pair in pairs:
|
||||
pair = pair.strip()
|
||||
if ':' in pair:
|
||||
key, value = pair.split(':', 1)
|
||||
key = key.strip()
|
||||
value = value.strip()
|
||||
try:
|
||||
ratio_dict[key] = float(value)
|
||||
except ValueError:
|
||||
raise BioyondException(f"无法将 '{value}' 转换为数字")
|
||||
if ratio_dict:
|
||||
ratio = ratio_dict
|
||||
self.hardware_interface._logger.info(
|
||||
f"从简化格式解析 ratio: '{original_ratio}' -> {ratio}"
|
||||
)
|
||||
except BioyondException:
|
||||
raise
|
||||
except Exception as e:
|
||||
self.hardware_interface._logger.warning(
|
||||
f"简化格式解析失败,尝试JSON格式: {e}"
|
||||
)
|
||||
|
||||
# 如果不是简化格式或解析失败,尝试JSON格式
|
||||
if isinstance(ratio, str):
|
||||
try:
|
||||
ratio = json.loads(ratio)
|
||||
# 处理可能的多层 JSON 编码
|
||||
if isinstance(ratio, str):
|
||||
try:
|
||||
ratio = json.loads(ratio)
|
||||
except Exception:
|
||||
pass
|
||||
except Exception as e:
|
||||
raise BioyondException(
|
||||
f"ratio 参数解析失败: {e}。\n"
|
||||
f"支持的格式:\n"
|
||||
f" 1. 简化格式(推荐): 'MDA:0.5,PAPP:0.5,BTDA:0.95'\n"
|
||||
f" 2. JSON格式: '{{\"MDA\": 0.5, \"BTDA\": 0.95, \"PAPP\": 0.5}}'"
|
||||
)
|
||||
|
||||
if not isinstance(ratio, dict):
|
||||
raise BioyondException(
|
||||
f"ratio 必须是字典类型或可解析的字符串,当前类型: {type(ratio)}。\n"
|
||||
f"支持的格式:\n"
|
||||
f" 1. 简化格式(推荐): 'MDA:0.5,PAPP:0.5,BTDA:0.95'\n"
|
||||
f" 2. JSON格式: '{{\"MDA\": 0.5, \"BTDA\": 0.95, \"PAPP\": 0.5}}'"
|
||||
)
|
||||
|
||||
if not ratio:
|
||||
raise BioyondException("ratio 参数不能为空")
|
||||
|
||||
# 记录解析后的参数用于调试
|
||||
self.hardware_interface._logger.info(f"最终解析的 ratio 参数: {ratio} (类型: {type(ratio)})")
|
||||
|
||||
try:
|
||||
ratio = json.loads(ratio)
|
||||
except Exception:
|
||||
ratio = {}
|
||||
root = str(Path(__file__).resolve().parents[3])
|
||||
if root not in sys.path:
|
||||
sys.path.append(root)
|
||||
try:
|
||||
mod = importlib.import_module("tem.compute")
|
||||
except Exception as e:
|
||||
raise BioyondException(f"无法导入计算模块: {e}")
|
||||
try:
|
||||
wp = float(wt_percent) if isinstance(wt_percent, str) else wt_percent
|
||||
mt = float(m_tot) if isinstance(m_tot, str) else m_tot
|
||||
@@ -1299,25 +1243,6 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
'actualVolume': actual_volume
|
||||
}
|
||||
|
||||
def scheduler_start(self) -> dict:
|
||||
"""启动调度器 - 启动Bioyond工作站的任务调度器,开始执行队列中的任务
|
||||
|
||||
Returns:
|
||||
dict: 包含return_info的字典,return_info为整型(1=成功)
|
||||
|
||||
Raises:
|
||||
BioyondException: 调度器启动失败时抛出异常
|
||||
"""
|
||||
result = self.hardware_interface.scheduler_start()
|
||||
self.hardware_interface._logger.info(f"调度器启动结果: {result}")
|
||||
|
||||
if result != 1:
|
||||
error_msg = "启动调度器失败: 有未处理错误,调度无法启动。请检查Bioyond系统状态。"
|
||||
self.hardware_interface._logger.error(error_msg)
|
||||
raise BioyondException(error_msg)
|
||||
|
||||
return {"return_info": result}
|
||||
|
||||
# 等待多个任务完成并获取实验报告
|
||||
def wait_for_multiple_orders_and_get_reports(self,
|
||||
batch_create_result: str = None,
|
||||
|
||||
@@ -147,7 +147,7 @@ class WorkstationBase(ABC):
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
deck: Deck,
|
||||
deck: Optional[Deck],
|
||||
*args,
|
||||
**kwargs, # 必须有kwargs
|
||||
):
|
||||
@@ -349,5 +349,5 @@ class WorkstationBase(ABC):
|
||||
|
||||
|
||||
class ProtocolNode(WorkstationBase):
|
||||
def __init__(self, deck: Optional[PLRResource], *args, **kwargs):
|
||||
def __init__(self, protocol_type: List[str], deck: Optional[PLRResource], *args, **kwargs):
|
||||
super().__init__(deck, *args, **kwargs)
|
||||
|
||||
@@ -83,6 +83,96 @@ workstation.bioyond_dispensing_station:
|
||||
title: batch_create_diamine_solution_tasks参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-brief_step_parameters:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
data: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
data:
|
||||
type: object
|
||||
required:
|
||||
- data
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: brief_step_parameters参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-compute_experiment_design:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
m_tot: '70'
|
||||
ratio: null
|
||||
titration_percent: '0.03'
|
||||
wt_percent: '0.25'
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
m_tot:
|
||||
default: '70'
|
||||
type: string
|
||||
ratio:
|
||||
type: object
|
||||
titration_percent:
|
||||
default: '0.03'
|
||||
type: string
|
||||
wt_percent:
|
||||
default: '0.25'
|
||||
type: string
|
||||
required:
|
||||
- ratio
|
||||
type: object
|
||||
result:
|
||||
properties:
|
||||
feeding_order:
|
||||
items: {}
|
||||
title: Feeding Order
|
||||
type: array
|
||||
return_info:
|
||||
title: Return Info
|
||||
type: string
|
||||
solutions:
|
||||
items: {}
|
||||
title: Solutions
|
||||
type: array
|
||||
solvents:
|
||||
additionalProperties: true
|
||||
title: Solvents
|
||||
type: object
|
||||
titration:
|
||||
additionalProperties: true
|
||||
title: Titration
|
||||
type: object
|
||||
required:
|
||||
- solutions
|
||||
- titration
|
||||
- solvents
|
||||
- feeding_order
|
||||
- return_info
|
||||
title: ComputeExperimentDesignReturn
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: compute_experiment_design参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-process_order_finish_report:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
@@ -112,6 +202,85 @@ workstation.bioyond_dispensing_station:
|
||||
title: process_order_finish_report参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-project_order_report:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
order_id: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
order_id:
|
||||
type: string
|
||||
required:
|
||||
- order_id
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: project_order_report参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-query_resource_by_name:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
material_name: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
material_name:
|
||||
type: string
|
||||
required:
|
||||
- material_name
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: query_resource_by_name参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-transfer_materials_to_reaction_station:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
target_device_id: null
|
||||
transfer_groups: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
target_device_id:
|
||||
type: string
|
||||
transfer_groups:
|
||||
type: array
|
||||
required:
|
||||
- target_device_id
|
||||
- transfer_groups
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: transfer_materials_to_reaction_station参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-wait_for_multiple_orders_and_get_reports:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
@@ -144,6 +313,31 @@ workstation.bioyond_dispensing_station:
|
||||
title: wait_for_multiple_orders_and_get_reports参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-workflow_sample_locations:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
workflow_id: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
workflow_id:
|
||||
type: string
|
||||
required:
|
||||
- workflow_id
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: workflow_sample_locations参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
create_90_10_vial_feeding_task:
|
||||
feedback: {}
|
||||
goal:
|
||||
|
||||
@@ -5,6 +5,96 @@ bioyond_dispensing_station:
|
||||
- bioyond_dispensing_station
|
||||
class:
|
||||
action_value_mappings:
|
||||
auto-brief_step_parameters:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
data: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
data:
|
||||
type: object
|
||||
required:
|
||||
- data
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: brief_step_parameters参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-compute_experiment_design:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
m_tot: '70'
|
||||
ratio: null
|
||||
titration_percent: '0.03'
|
||||
wt_percent: '0.25'
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
m_tot:
|
||||
default: '70'
|
||||
type: string
|
||||
ratio:
|
||||
type: object
|
||||
titration_percent:
|
||||
default: '0.03'
|
||||
type: string
|
||||
wt_percent:
|
||||
default: '0.25'
|
||||
type: string
|
||||
required:
|
||||
- ratio
|
||||
type: object
|
||||
result:
|
||||
properties:
|
||||
feeding_order:
|
||||
items: {}
|
||||
title: Feeding Order
|
||||
type: array
|
||||
return_info:
|
||||
title: Return Info
|
||||
type: string
|
||||
solutions:
|
||||
items: {}
|
||||
title: Solutions
|
||||
type: array
|
||||
solvents:
|
||||
additionalProperties: true
|
||||
title: Solvents
|
||||
type: object
|
||||
titration:
|
||||
additionalProperties: true
|
||||
title: Titration
|
||||
type: object
|
||||
required:
|
||||
- solutions
|
||||
- titration
|
||||
- solvents
|
||||
- feeding_order
|
||||
- return_info
|
||||
title: ComputeExperimentDesignReturn
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: compute_experiment_design参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-process_order_finish_report:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
@@ -34,6 +124,110 @@ bioyond_dispensing_station:
|
||||
title: process_order_finish_report参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-project_order_report:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
order_id: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
order_id:
|
||||
type: string
|
||||
required:
|
||||
- order_id
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: project_order_report参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-query_resource_by_name:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
material_name: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
material_name:
|
||||
type: string
|
||||
required:
|
||||
- material_name
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: query_resource_by_name参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-transfer_materials_to_reaction_station:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
target_device_id: null
|
||||
transfer_groups: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
target_device_id:
|
||||
type: string
|
||||
transfer_groups:
|
||||
type: array
|
||||
required:
|
||||
- target_device_id
|
||||
- transfer_groups
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: transfer_materials_to_reaction_station参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-workflow_sample_locations:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
workflow_id: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
workflow_id:
|
||||
type: string
|
||||
required:
|
||||
- workflow_id
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: workflow_sample_locations参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
batch_create_90_10_vial_feeding_tasks:
|
||||
feedback: {}
|
||||
goal:
|
||||
|
||||
@@ -61,6 +61,9 @@ camera:
|
||||
device_id:
|
||||
default: video_publisher
|
||||
type: string
|
||||
device_uuid:
|
||||
default: ''
|
||||
type: string
|
||||
period:
|
||||
default: 0.1
|
||||
type: number
|
||||
|
||||
@@ -4497,9 +4497,6 @@ liquid_handler:
|
||||
simulator:
|
||||
default: false
|
||||
type: boolean
|
||||
total_height:
|
||||
default: 310
|
||||
type: number
|
||||
required:
|
||||
- backend
|
||||
- deck
|
||||
|
||||
@@ -4,6 +4,215 @@ reaction_station.bioyond:
|
||||
- reaction_station_bioyond
|
||||
class:
|
||||
action_value_mappings:
|
||||
auto-create_order:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
json_str: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
json_str:
|
||||
type: string
|
||||
required:
|
||||
- json_str
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: create_order参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-hard_delete_merged_workflows:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
workflow_ids: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
workflow_ids:
|
||||
items:
|
||||
type: string
|
||||
type: array
|
||||
required:
|
||||
- workflow_ids
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: hard_delete_merged_workflows参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-merge_workflow_with_parameters:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
json_str: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
json_str:
|
||||
type: string
|
||||
required:
|
||||
- json_str
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: merge_workflow_with_parameters参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-process_temperature_cutoff_report:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
report_request: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
report_request:
|
||||
type: string
|
||||
required:
|
||||
- report_request
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: process_temperature_cutoff_report参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-process_web_workflows:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
web_workflow_json: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
web_workflow_json:
|
||||
type: string
|
||||
required:
|
||||
- web_workflow_json
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: process_web_workflows参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-skip_titration_steps:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
preintake_id: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
preintake_id:
|
||||
type: string
|
||||
required:
|
||||
- preintake_id
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: skip_titration_steps参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-wait_for_multiple_orders_and_get_reports:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
batch_create_result: null
|
||||
check_interval: 10
|
||||
timeout: 7200
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
batch_create_result:
|
||||
type: string
|
||||
check_interval:
|
||||
default: 10
|
||||
type: integer
|
||||
timeout:
|
||||
default: 7200
|
||||
type: integer
|
||||
required: []
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: wait_for_multiple_orders_and_get_reports参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-workflow_step_query:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
workflow_id: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
workflow_id:
|
||||
type: string
|
||||
required:
|
||||
- workflow_id
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: workflow_step_query参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
drip_back:
|
||||
feedback: {}
|
||||
goal:
|
||||
@@ -553,19 +762,7 @@ reaction_station.bioyond:
|
||||
module: unilabos.devices.workstation.bioyond_studio.reaction_station:BioyondReactionStation
|
||||
protocol_type: []
|
||||
status_types:
|
||||
all_workflows: dict
|
||||
average_viscosity: float
|
||||
bioyond_status: dict
|
||||
force: float
|
||||
in_temperature: float
|
||||
out_temperature: float
|
||||
pt100_temperature: float
|
||||
sensor_average_temperature: float
|
||||
setting_temperature: float
|
||||
speed: float
|
||||
target_temperature: float
|
||||
viscosity: float
|
||||
workstation_status: dict
|
||||
workflow_sequence: String
|
||||
type: python
|
||||
config_info: []
|
||||
description: Bioyond反应站
|
||||
@@ -577,21 +774,19 @@ reaction_station.bioyond:
|
||||
config:
|
||||
type: object
|
||||
deck:
|
||||
type: object
|
||||
type: string
|
||||
protocol_type:
|
||||
type: string
|
||||
required: []
|
||||
type: object
|
||||
data:
|
||||
properties:
|
||||
all_workflows:
|
||||
type: object
|
||||
bioyond_status:
|
||||
type: object
|
||||
workstation_status:
|
||||
type: object
|
||||
workflow_sequence:
|
||||
items:
|
||||
type: string
|
||||
type: array
|
||||
required:
|
||||
- bioyond_status
|
||||
- all_workflows
|
||||
- workstation_status
|
||||
- workflow_sequence
|
||||
type: object
|
||||
version: 1.0.0
|
||||
reaction_station.reactor:
|
||||
@@ -599,19 +794,34 @@ reaction_station.reactor:
|
||||
- reactor
|
||||
- reaction_station_bioyond
|
||||
class:
|
||||
action_value_mappings: {}
|
||||
action_value_mappings:
|
||||
auto-update_metrics:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
payload: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
payload:
|
||||
type: object
|
||||
required:
|
||||
- payload
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: update_metrics参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
module: unilabos.devices.workstation.bioyond_studio.reaction_station:BioyondReactor
|
||||
status_types:
|
||||
average_viscosity: float
|
||||
force: float
|
||||
in_temperature: float
|
||||
out_temperature: float
|
||||
pt100_temperature: float
|
||||
sensor_average_temperature: float
|
||||
setting_temperature: float
|
||||
speed: float
|
||||
target_temperature: float
|
||||
viscosity: float
|
||||
status_types: {}
|
||||
type: python
|
||||
config_info: []
|
||||
description: 反应站子设备-反应器
|
||||
@@ -622,30 +832,14 @@ reaction_station.reactor:
|
||||
properties:
|
||||
config:
|
||||
type: object
|
||||
deck:
|
||||
type: string
|
||||
protocol_type:
|
||||
type: string
|
||||
required: []
|
||||
type: object
|
||||
data:
|
||||
properties:
|
||||
average_viscosity:
|
||||
type: number
|
||||
force:
|
||||
type: number
|
||||
in_temperature:
|
||||
type: number
|
||||
out_temperature:
|
||||
type: number
|
||||
pt100_temperature:
|
||||
type: number
|
||||
sensor_average_temperature:
|
||||
type: number
|
||||
setting_temperature:
|
||||
type: number
|
||||
speed:
|
||||
type: number
|
||||
target_temperature:
|
||||
type: number
|
||||
viscosity:
|
||||
type: number
|
||||
properties: {}
|
||||
required: []
|
||||
type: object
|
||||
version: 1.0.0
|
||||
|
||||
@@ -6036,7 +6036,12 @@ workstation:
|
||||
properties:
|
||||
deck:
|
||||
type: string
|
||||
protocol_type:
|
||||
items:
|
||||
type: string
|
||||
type: array
|
||||
required:
|
||||
- protocol_type
|
||||
- deck
|
||||
type: object
|
||||
data:
|
||||
|
||||
@@ -453,7 +453,7 @@ class Registry:
|
||||
return status_schema
|
||||
|
||||
def _generate_unilab_json_command_schema(
|
||||
self, method_args: List[Dict[str, Any]], method_name: str
|
||||
self, method_args: List[Dict[str, Any]], method_name: str, return_annotation: Any = None
|
||||
) -> Dict[str, Any]:
|
||||
"""
|
||||
根据UniLabJsonCommand方法信息生成JSON Schema,暂不支持嵌套类型
|
||||
@@ -461,6 +461,7 @@ class Registry:
|
||||
Args:
|
||||
method_args: 方法信息字典,包含args等
|
||||
method_name: 方法名称
|
||||
return_annotation: 返回类型注解,用于生成result schema(仅支持TypedDict)
|
||||
|
||||
Returns:
|
||||
JSON Schema格式的参数schema
|
||||
@@ -489,14 +490,68 @@ class Registry:
|
||||
if param_required:
|
||||
schema["required"].append(param_name)
|
||||
|
||||
# 生成result schema(仅当return_annotation是TypedDict时)
|
||||
result_schema = {}
|
||||
if return_annotation is not None and self._is_typed_dict(return_annotation):
|
||||
result_schema = self._generate_typed_dict_result_schema(return_annotation)
|
||||
|
||||
return {
|
||||
"title": f"{method_name}参数",
|
||||
"description": f"",
|
||||
"type": "object",
|
||||
"properties": {"goal": schema, "feedback": {}, "result": {}},
|
||||
"properties": {"goal": schema, "feedback": {}, "result": result_schema},
|
||||
"required": ["goal"],
|
||||
}
|
||||
|
||||
def _is_typed_dict(self, annotation: Any) -> bool:
|
||||
"""
|
||||
检查类型注解是否是TypedDict
|
||||
|
||||
Args:
|
||||
annotation: 类型注解对象
|
||||
|
||||
Returns:
|
||||
是否为TypedDict
|
||||
"""
|
||||
if annotation is None or annotation == inspect.Parameter.empty:
|
||||
return False
|
||||
|
||||
# 使用 typing_extensions.is_typeddict 进行检查(Python < 3.12 兼容)
|
||||
try:
|
||||
from typing_extensions import is_typeddict
|
||||
|
||||
return is_typeddict(annotation)
|
||||
except ImportError:
|
||||
# 回退方案:检查 TypedDict 特有的属性
|
||||
if isinstance(annotation, type):
|
||||
return hasattr(annotation, "__required_keys__") and hasattr(annotation, "__optional_keys__")
|
||||
return False
|
||||
|
||||
def _generate_typed_dict_result_schema(self, return_annotation: Any) -> Dict[str, Any]:
|
||||
"""
|
||||
根据TypedDict类型生成result的JSON Schema
|
||||
|
||||
Args:
|
||||
return_annotation: TypedDict类型注解
|
||||
|
||||
Returns:
|
||||
JSON Schema格式的result schema
|
||||
"""
|
||||
if not self._is_typed_dict(return_annotation):
|
||||
return {}
|
||||
|
||||
try:
|
||||
from msgcenterpy.instances.typed_dict_instance import TypedDictMessageInstance
|
||||
|
||||
result_schema = TypedDictMessageInstance.get_json_schema_from_typed_dict(return_annotation)
|
||||
return result_schema
|
||||
except ImportError:
|
||||
logger.warning("[UniLab Registry] msgcenterpy未安装,无法生成TypedDict的result schema")
|
||||
return {}
|
||||
except Exception as e:
|
||||
logger.warning(f"[UniLab Registry] 生成TypedDict result schema失败: {e}")
|
||||
return {}
|
||||
|
||||
def _add_builtin_actions(self, device_config: Dict[str, Any], device_id: str):
|
||||
"""
|
||||
为设备配置添加内置的执行驱动命令动作
|
||||
@@ -577,9 +632,15 @@ class Registry:
|
||||
if "init_param_schema" not in device_config:
|
||||
device_config["init_param_schema"] = {}
|
||||
if "class" in device_config:
|
||||
if "status_types" not in device_config["class"] or device_config["class"]["status_types"] is None:
|
||||
if (
|
||||
"status_types" not in device_config["class"]
|
||||
or device_config["class"]["status_types"] is None
|
||||
):
|
||||
device_config["class"]["status_types"] = {}
|
||||
if "action_value_mappings" not in device_config["class"] or device_config["class"]["action_value_mappings"] is None:
|
||||
if (
|
||||
"action_value_mappings" not in device_config["class"]
|
||||
or device_config["class"]["action_value_mappings"] is None
|
||||
):
|
||||
device_config["class"]["action_value_mappings"] = {}
|
||||
enhanced_info = {}
|
||||
if complete_registry:
|
||||
@@ -631,7 +692,9 @@ class Registry:
|
||||
"goal": {},
|
||||
"feedback": {},
|
||||
"result": {},
|
||||
"schema": self._generate_unilab_json_command_schema(v["args"], k),
|
||||
"schema": self._generate_unilab_json_command_schema(
|
||||
v["args"], k, v.get("return_annotation")
|
||||
),
|
||||
"goal_default": {i["name"]: i["default"] for i in v["args"]},
|
||||
"handles": [],
|
||||
"placeholder_keys": {
|
||||
|
||||
@@ -2,7 +2,7 @@ container:
|
||||
category:
|
||||
- container
|
||||
class:
|
||||
module: unilabos.resources.container:RegularContainer
|
||||
module: unilabos.resources.container:get_regular_container
|
||||
type: pylabrobot
|
||||
description: regular organic container
|
||||
handles:
|
||||
|
||||
@@ -22,6 +22,13 @@ class RegularContainer(Container):
|
||||
|
||||
def load_state(self, state: Dict[str, Any]):
|
||||
self.state = state
|
||||
|
||||
|
||||
def get_regular_container(name="container"):
|
||||
r = RegularContainer(name=name)
|
||||
r.category = "container"
|
||||
return RegularContainer(name=name)
|
||||
|
||||
#
|
||||
# class RegularContainer(object):
|
||||
# # 第一个参数必须是id传入
|
||||
|
||||
@@ -1144,7 +1144,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
queried_resources = []
|
||||
for resource_data in resource_inputs:
|
||||
plr_resource = await self.get_resource_with_dir(
|
||||
resource_ids=resource_data["id"], with_children=True
|
||||
resource_id=resource_data["id"], with_children=True
|
||||
)
|
||||
queried_resources.append(plr_resource)
|
||||
|
||||
|
||||
@@ -5,7 +5,7 @@ import threading
|
||||
import time
|
||||
import traceback
|
||||
import uuid
|
||||
from typing import TYPE_CHECKING, Optional, Dict, Any, List, ClassVar, Set, Union
|
||||
from typing import TYPE_CHECKING, Optional, Dict, Any, List, ClassVar, Set, TypedDict, Union
|
||||
|
||||
from action_msgs.msg import GoalStatus
|
||||
from geometry_msgs.msg import Point
|
||||
@@ -38,6 +38,7 @@ from unilabos.ros.msgs.message_converter import (
|
||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, ROS2DeviceNode, DeviceNodeResourceTracker
|
||||
from unilabos.ros.nodes.presets.controller_node import ControllerNode
|
||||
from unilabos.ros.nodes.resource_tracker import (
|
||||
ResourceDict,
|
||||
ResourceDictInstance,
|
||||
ResourceTreeSet,
|
||||
ResourceTreeInstance,
|
||||
@@ -48,7 +49,7 @@ from unilabos.utils.type_check import serialize_result_info
|
||||
from unilabos.registry.placeholder_type import ResourceSlot, DeviceSlot
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from unilabos.app.ws_client import QueueItem, WSResourceChatData
|
||||
from unilabos.app.ws_client import QueueItem
|
||||
|
||||
|
||||
@dataclass
|
||||
@@ -56,6 +57,11 @@ class DeviceActionStatus:
|
||||
job_ids: Dict[str, float] = field(default_factory=dict)
|
||||
|
||||
|
||||
class TestResourceReturn(TypedDict):
|
||||
resources: List[List[ResourceDict]]
|
||||
devices: List[DeviceSlot]
|
||||
|
||||
|
||||
class HostNode(BaseROS2DeviceNode):
|
||||
"""
|
||||
主机节点类,负责管理设备、资源和控制器
|
||||
@@ -785,6 +791,16 @@ class HostNode(BaseROS2DeviceNode):
|
||||
del self._goals[job_id]
|
||||
self.lab_logger().debug(f"[Host Node] Removed goal {job_id[:8]} from _goals")
|
||||
|
||||
# 存储结果供 HTTP API 查询
|
||||
try:
|
||||
from unilabos.app.web.controller import store_job_result
|
||||
if goal_status == GoalStatus.STATUS_CANCELED:
|
||||
store_job_result(job_id, status, return_info, {})
|
||||
else:
|
||||
store_job_result(job_id, status, return_info, result_data)
|
||||
except ImportError:
|
||||
pass # controller 模块可能未加载
|
||||
|
||||
# 发布状态到桥接器
|
||||
if job_id:
|
||||
for bridge in self.bridges:
|
||||
@@ -1347,7 +1363,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
|
||||
def test_resource(
|
||||
self, resource: ResourceSlot, resources: List[ResourceSlot], device: DeviceSlot, devices: List[DeviceSlot]
|
||||
):
|
||||
) -> TestResourceReturn:
|
||||
return {
|
||||
"resources": ResourceTreeSet.from_plr_resources([resource, *resources]).dump(),
|
||||
"devices": [device, *devices],
|
||||
|
||||
@@ -5,6 +5,7 @@
|
||||
|
||||
import argparse
|
||||
import importlib
|
||||
import locale
|
||||
import subprocess
|
||||
import sys
|
||||
|
||||
@@ -22,13 +23,33 @@ class EnvironmentChecker:
|
||||
"websockets": "websockets",
|
||||
"msgcenterpy": "msgcenterpy",
|
||||
"opentrons_shared_data": "opentrons_shared_data",
|
||||
"typing_extensions": "typing_extensions",
|
||||
}
|
||||
|
||||
# 特殊安装包(需要特殊处理的包)
|
||||
self.special_packages = {"pylabrobot": "git+https://github.com/Xuwznln/pylabrobot.git"}
|
||||
|
||||
# 包版本要求(包名: 最低版本)
|
||||
self.version_requirements = {
|
||||
"msgcenterpy": "0.1.5", # msgcenterpy 最低版本要求
|
||||
}
|
||||
|
||||
self.missing_packages = []
|
||||
self.failed_installs = []
|
||||
self.packages_need_upgrade = []
|
||||
|
||||
# 检测系统语言
|
||||
self.is_chinese = self._is_chinese_locale()
|
||||
|
||||
def _is_chinese_locale(self) -> bool:
|
||||
"""检测系统是否为中文环境"""
|
||||
try:
|
||||
lang = locale.getdefaultlocale()[0]
|
||||
if lang and ("zh" in lang.lower() or "chinese" in lang.lower()):
|
||||
return True
|
||||
except Exception:
|
||||
pass
|
||||
return False
|
||||
|
||||
def check_package_installed(self, package_name: str) -> bool:
|
||||
"""检查包是否已安装"""
|
||||
@@ -38,31 +59,74 @@ class EnvironmentChecker:
|
||||
except ImportError:
|
||||
return False
|
||||
|
||||
def install_package(self, package_name: str, pip_name: str) -> bool:
|
||||
def get_package_version(self, package_name: str) -> str | None:
|
||||
"""获取已安装包的版本"""
|
||||
try:
|
||||
module = importlib.import_module(package_name)
|
||||
return getattr(module, "__version__", None)
|
||||
except (ImportError, AttributeError):
|
||||
return None
|
||||
|
||||
def compare_version(self, current: str, required: str) -> bool:
|
||||
"""
|
||||
比较版本号
|
||||
Returns:
|
||||
True: current >= required
|
||||
False: current < required
|
||||
"""
|
||||
try:
|
||||
current_parts = [int(x) for x in current.split(".")]
|
||||
required_parts = [int(x) for x in required.split(".")]
|
||||
|
||||
# 补齐长度
|
||||
max_len = max(len(current_parts), len(required_parts))
|
||||
current_parts.extend([0] * (max_len - len(current_parts)))
|
||||
required_parts.extend([0] * (max_len - len(required_parts)))
|
||||
|
||||
return current_parts >= required_parts
|
||||
except Exception:
|
||||
return True # 如果无法比较,假设版本满足要求
|
||||
|
||||
def install_package(self, package_name: str, pip_name: str, upgrade: bool = False) -> bool:
|
||||
"""安装包"""
|
||||
try:
|
||||
print_status(f"正在安装 {package_name} ({pip_name})...", "info")
|
||||
action = "升级" if upgrade else "安装"
|
||||
print_status(f"正在{action} {package_name} ({pip_name})...", "info")
|
||||
|
||||
# 构建安装命令
|
||||
cmd = [sys.executable, "-m", "pip", "install", pip_name]
|
||||
cmd = [sys.executable, "-m", "pip", "install"]
|
||||
|
||||
# 如果是升级操作,添加 --upgrade 参数
|
||||
if upgrade:
|
||||
cmd.append("--upgrade")
|
||||
|
||||
cmd.append(pip_name)
|
||||
|
||||
# 如果是中文环境,使用清华镜像源
|
||||
if self.is_chinese:
|
||||
cmd.extend(["-i", "https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple"])
|
||||
|
||||
# 执行安装
|
||||
result = subprocess.run(cmd, capture_output=True, text=True, timeout=300) # 5分钟超时
|
||||
|
||||
if result.returncode == 0:
|
||||
print_status(f"✓ {package_name} 安装成功", "success")
|
||||
print_status(f"✓ {package_name} {action}成功", "success")
|
||||
return True
|
||||
else:
|
||||
print_status(f"× {package_name} 安装失败: {result.stderr}", "error")
|
||||
print_status(f"× {package_name} {action}失败: {result.stderr}", "error")
|
||||
return False
|
||||
|
||||
except subprocess.TimeoutExpired:
|
||||
print_status(f"× {package_name} 安装超时", "error")
|
||||
print_status(f"× {package_name} {action}超时", "error")
|
||||
return False
|
||||
except Exception as e:
|
||||
print_status(f"× {package_name} 安装异常: {str(e)}", "error")
|
||||
print_status(f"× {package_name} {action}异常: {str(e)}", "error")
|
||||
return False
|
||||
|
||||
def upgrade_package(self, package_name: str, pip_name: str) -> bool:
|
||||
"""升级包"""
|
||||
return self.install_package(package_name, pip_name, upgrade=True)
|
||||
|
||||
def check_all_packages(self) -> bool:
|
||||
"""检查所有必需的包"""
|
||||
print_status("开始检查环境依赖...", "info")
|
||||
@@ -71,60 +135,116 @@ class EnvironmentChecker:
|
||||
for import_name, pip_name in self.required_packages.items():
|
||||
if not self.check_package_installed(import_name):
|
||||
self.missing_packages.append((import_name, pip_name))
|
||||
else:
|
||||
# 检查版本要求
|
||||
if import_name in self.version_requirements:
|
||||
current_version = self.get_package_version(import_name)
|
||||
required_version = self.version_requirements[import_name]
|
||||
|
||||
if current_version:
|
||||
if not self.compare_version(current_version, required_version):
|
||||
print_status(
|
||||
f"{import_name} 版本过低 (当前: {current_version}, 需要: >={required_version})",
|
||||
"warning",
|
||||
)
|
||||
self.packages_need_upgrade.append((import_name, pip_name))
|
||||
|
||||
# 检查特殊包
|
||||
for package_name, install_url in self.special_packages.items():
|
||||
if not self.check_package_installed(package_name):
|
||||
self.missing_packages.append((package_name, install_url))
|
||||
|
||||
if not self.missing_packages:
|
||||
all_ok = not self.missing_packages and not self.packages_need_upgrade
|
||||
|
||||
if all_ok:
|
||||
print_status("✓ 所有依赖包检查完成,环境正常", "success")
|
||||
return True
|
||||
|
||||
print_status(f"发现 {len(self.missing_packages)} 个缺失的包", "warning")
|
||||
if self.missing_packages:
|
||||
print_status(f"发现 {len(self.missing_packages)} 个缺失的包", "warning")
|
||||
if self.packages_need_upgrade:
|
||||
print_status(f"发现 {len(self.packages_need_upgrade)} 个需要升级的包", "warning")
|
||||
|
||||
return False
|
||||
|
||||
def install_missing_packages(self, auto_install: bool = True) -> bool:
|
||||
"""安装缺失的包"""
|
||||
if not self.missing_packages:
|
||||
if not self.missing_packages and not self.packages_need_upgrade:
|
||||
return True
|
||||
|
||||
if not auto_install:
|
||||
print_status("缺失以下包:", "warning")
|
||||
for import_name, pip_name in self.missing_packages:
|
||||
print_status(f" - {import_name} (pip install {pip_name})", "warning")
|
||||
if self.missing_packages:
|
||||
print_status("缺失以下包:", "warning")
|
||||
for import_name, pip_name in self.missing_packages:
|
||||
print_status(f" - {import_name} (pip install {pip_name})", "warning")
|
||||
if self.packages_need_upgrade:
|
||||
print_status("需要升级以下包:", "warning")
|
||||
for import_name, pip_name in self.packages_need_upgrade:
|
||||
print_status(f" - {import_name} (pip install --upgrade {pip_name})", "warning")
|
||||
return False
|
||||
|
||||
print_status(f"开始自动安装 {len(self.missing_packages)} 个缺失的包...", "info")
|
||||
# 安装缺失的包
|
||||
if self.missing_packages:
|
||||
print_status(f"开始自动安装 {len(self.missing_packages)} 个缺失的包...", "info")
|
||||
|
||||
success_count = 0
|
||||
for import_name, pip_name in self.missing_packages:
|
||||
if self.install_package(import_name, pip_name):
|
||||
success_count += 1
|
||||
else:
|
||||
self.failed_installs.append((import_name, pip_name))
|
||||
success_count = 0
|
||||
for import_name, pip_name in self.missing_packages:
|
||||
if self.install_package(import_name, pip_name):
|
||||
success_count += 1
|
||||
else:
|
||||
self.failed_installs.append((import_name, pip_name))
|
||||
|
||||
print_status(f"✓ 成功安装 {success_count}/{len(self.missing_packages)} 个包", "success")
|
||||
|
||||
# 升级需要更新的包
|
||||
if self.packages_need_upgrade:
|
||||
print_status(f"开始自动升级 {len(self.packages_need_upgrade)} 个包...", "info")
|
||||
|
||||
upgrade_success_count = 0
|
||||
for import_name, pip_name in self.packages_need_upgrade:
|
||||
if self.upgrade_package(import_name, pip_name):
|
||||
upgrade_success_count += 1
|
||||
else:
|
||||
self.failed_installs.append((import_name, pip_name))
|
||||
|
||||
print_status(f"✓ 成功升级 {upgrade_success_count}/{len(self.packages_need_upgrade)} 个包", "success")
|
||||
|
||||
if self.failed_installs:
|
||||
print_status(f"有 {len(self.failed_installs)} 个包安装失败:", "error")
|
||||
print_status(f"有 {len(self.failed_installs)} 个包操作失败:", "error")
|
||||
for import_name, pip_name in self.failed_installs:
|
||||
print_status(f" - {import_name} (pip install {pip_name})", "error")
|
||||
print_status(f" - {import_name} ({pip_name})", "error")
|
||||
return False
|
||||
|
||||
print_status(f"✓ 成功安装 {success_count} 个包", "success")
|
||||
return True
|
||||
|
||||
def verify_installation(self) -> bool:
|
||||
"""验证安装结果"""
|
||||
if not self.missing_packages:
|
||||
if not self.missing_packages and not self.packages_need_upgrade:
|
||||
return True
|
||||
|
||||
print_status("验证安装结果...", "info")
|
||||
|
||||
failed_verification = []
|
||||
|
||||
# 验证新安装的包
|
||||
for import_name, pip_name in self.missing_packages:
|
||||
if not self.check_package_installed(import_name):
|
||||
failed_verification.append((import_name, pip_name))
|
||||
|
||||
# 验证升级的包
|
||||
for import_name, pip_name in self.packages_need_upgrade:
|
||||
if not self.check_package_installed(import_name):
|
||||
failed_verification.append((import_name, pip_name))
|
||||
elif import_name in self.version_requirements:
|
||||
current_version = self.get_package_version(import_name)
|
||||
required_version = self.version_requirements[import_name]
|
||||
if current_version and not self.compare_version(current_version, required_version):
|
||||
failed_verification.append((import_name, pip_name))
|
||||
print_status(
|
||||
f" {import_name} 版本仍然过低 (当前: {current_version}, 需要: >={required_version})",
|
||||
"error",
|
||||
)
|
||||
|
||||
if failed_verification:
|
||||
print_status(f"有 {len(failed_verification)} 个包验证失败:", "error")
|
||||
for import_name, pip_name in failed_verification:
|
||||
|
||||
@@ -239,8 +239,12 @@ class ImportManager:
|
||||
cls = get_class(class_path)
|
||||
class_name = cls.__name__
|
||||
|
||||
result = {"class_name": class_name, "init_params": self._analyze_method_signature(cls.__init__)["args"],
|
||||
"status_methods": {}, "action_methods": {}}
|
||||
result = {
|
||||
"class_name": class_name,
|
||||
"init_params": self._analyze_method_signature(cls.__init__)["args"],
|
||||
"status_methods": {},
|
||||
"action_methods": {},
|
||||
}
|
||||
# 分析类的所有成员
|
||||
for name, method in cls.__dict__.items():
|
||||
if name.startswith("_"):
|
||||
@@ -374,6 +378,7 @@ class ImportManager:
|
||||
"name": method.__name__,
|
||||
"args": args,
|
||||
"return_type": self._get_type_string(signature.return_annotation),
|
||||
"return_annotation": signature.return_annotation, # 保留原始类型注解,用于TypedDict等特殊处理
|
||||
"is_async": inspect.iscoroutinefunction(method),
|
||||
}
|
||||
|
||||
|
||||
@@ -124,11 +124,14 @@ class ColoredFormatter(logging.Formatter):
|
||||
def _format_basic(self, record):
|
||||
"""基本格式化,不包含颜色"""
|
||||
datetime_str = datetime.fromtimestamp(record.created).strftime("%y-%m-%d [%H:%M:%S,%f")[:-3] + "]"
|
||||
filename = os.path.basename(record.filename).rsplit(".", 1)[0] # 提取文件名(不含路径和扩展名)
|
||||
filename = record.filename.replace(".py", "").split("\\")[-1] # 提取文件名(不含路径和扩展名)
|
||||
if "/" in filename:
|
||||
filename = filename.split("/")[-1]
|
||||
module_path = f"{record.name}.{filename}"
|
||||
func_line = f"{record.funcName}:{record.lineno}"
|
||||
right_info = f" [{func_line}] [{module_path}]"
|
||||
|
||||
formatted_message = f"{datetime_str} [{record.levelname}] [{module_path}] [{func_line}]: {record.getMessage()}"
|
||||
formatted_message = f"{datetime_str} [{record.levelname}] {record.getMessage()}{right_info}"
|
||||
|
||||
if record.exc_info:
|
||||
exc_text = self.formatException(record.exc_info)
|
||||
@@ -150,7 +153,7 @@ class ColoredFormatter(logging.Formatter):
|
||||
|
||||
|
||||
# 配置日志处理器
|
||||
def configure_logger(loglevel=None):
|
||||
def configure_logger(loglevel=None, working_dir=None):
|
||||
"""配置日志记录器
|
||||
|
||||
Args:
|
||||
@@ -191,9 +194,30 @@ def configure_logger(loglevel=None):
|
||||
|
||||
# 添加处理器到根日志记录器
|
||||
root_logger.addHandler(console_handler)
|
||||
|
||||
# 如果指定了工作目录,添加文件处理器
|
||||
if working_dir is not None:
|
||||
logs_dir = os.path.join(working_dir, "logs")
|
||||
os.makedirs(logs_dir, exist_ok=True)
|
||||
|
||||
# 生成日志文件名:日期 时间.log
|
||||
log_filename = datetime.now().strftime("%Y-%m-%d %H-%M-%S") + ".log"
|
||||
log_filepath = os.path.join(logs_dir, log_filename)
|
||||
|
||||
# 创建文件处理器
|
||||
file_handler = logging.FileHandler(log_filepath, encoding="utf-8")
|
||||
file_handler.setLevel(root_logger.level)
|
||||
|
||||
# 使用不带颜色的格式化器
|
||||
file_formatter = ColoredFormatter(use_colors=False)
|
||||
file_handler.setFormatter(file_formatter)
|
||||
|
||||
root_logger.addHandler(file_handler)
|
||||
|
||||
logging.getLogger("asyncio").setLevel(logging.INFO)
|
||||
logging.getLogger("urllib3").setLevel(logging.INFO)
|
||||
|
||||
|
||||
# 配置日志系统
|
||||
configure_logger()
|
||||
|
||||
|
||||
Reference in New Issue
Block a user