Merge branch '37-biomek-i5i7' into device_visualization

README.md

@@ -49,7 +49,7 @@ conda env update --file unilabos-[YOUR_OS].yml -n environment_name
 
 # Currently, you need to install the `unilabos_msgs` package
 # You can download the system-specific package from the Release page
-conda install ros-humble-unilabos-msgs-0.9.1-xxxxx.tar.bz2
+conda install ros-humble-unilabos-msgs-0.9.2-xxxxx.tar.bz2
 
 # Install PyLabRobot and other prerequisites
 git clone https://github.com/PyLabRobot/pylabrobot plr_repo

README_zh.md

@@ -49,7 +49,7 @@ conda env update --file unilabos-[YOUR_OS].yml -n 环境名
 
 # 现阶段，需要安装 `unilabos_msgs` 包
 # 可以前往 Release 页面下载系统对应的包进行安装
-conda install ros-humble-unilabos-msgs-0.9.1-xxxxx.tar.bz2
+conda install ros-humble-unilabos-msgs-0.9.2-xxxxx.tar.bz2
 
 # 安装PyLabRobot等前置
 git clone https://github.com/PyLabRobot/pylabrobot plr_repo

recipes/ros-humble-unilabos-msgs/recipe.yaml

@@ -1,6 +1,6 @@
 package:
   name: ros-humble-unilabos-msgs
-  version: 0.9.1
+  version: 0.9.2
 source:
   path: ../../unilabos_msgs
   folder: ros-humble-unilabos-msgs/src/work

recipes/unilabos/recipe.yaml

@@ -1,6 +1,6 @@
 package:
   name: unilabos
-  version: "0.9.1"
+  version: "0.9.2"
 
 source:
   path: ../..

setup.py

@@ -4,7 +4,7 @@ package_name = 'unilabos'
 
 setup(
     name=package_name,
-    version='0.9.1',
+    version='0.9.2',
     packages=find_packages(),
     include_package_data=True,
     install_requires=['setuptools'],

test/experiments/biomek.json

@@ -0,0 +1,22 @@
+{
+    "nodes": [
+        {
+            "id": "BIOMEK",
+            "name": "BIOMEK",
+            "parent": null,
+            "type": "device",
+            "class": "liquid_handler.biomek",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+            },
+            "data": {},
+            "children": [
+            ]
+        }
+    ],
+    "links": []
+}

unilabos/app/main.py

@@ -10,6 +10,8 @@ from copy import deepcopy
 
 import yaml
 
+from unilabos.resources.graphio import tree_to_list
+
 # 首先添加项目根目录到路径
 current_dir = os.path.dirname(os.path.abspath(__file__))
 unilabos_dir = os.path.dirname(os.path.dirname(current_dir))
@@ -144,19 +146,19 @@ def main():
             else read_graphml(args_dict["graph"])
         )
         devices_and_resources = dict_from_graph(graph_res.physical_setup_graph)
-        args_dict["resources_config"] = initialize_resources(list(deepcopy(devices_and_resources).values()))
+        # args_dict["resources_config"] = initialize_resources(list(deepcopy(devices_and_resources).values()))
+        args_dict["resources_config"] = list(devices_and_resources.values())
         args_dict["devices_config"] = dict_to_nested_dict(deepcopy(devices_and_resources), devices_only=False)
-        # args_dict["resources_config"] = dict_to_tree(devices_and_resources, devices_only=False)
-
         args_dict["graph"] = graph_res.physical_setup_graph
     else:
         if args_dict["devices"] is None or args_dict["resources"] is None:
             print_status("Either graph or devices and resources must be provided.", "error")
             sys.exit(1)
         args_dict["devices_config"] = json.load(open(args_dict["devices"], encoding="utf-8"))
-        args_dict["resources_config"] = initialize_resources(
+        # args_dict["resources_config"] = initialize_resources(
-            list(json.load(open(args_dict["resources"], encoding="utf-8")).values())
+        #     list(json.load(open(args_dict["resources"], encoding="utf-8")).values())
-        )
+        # )
+        args_dict["resources_config"] = list(json.load(open(args_dict["resources"], encoding="utf-8")).values())
 
     print_status(f"{len(args_dict['resources_config'])} Resources loaded:", "info")
     for i in args_dict["resources_config"]:

unilabos/app/mq.py

@@ -1,6 +1,7 @@
 import json
 import time
 import traceback
+from typing import Optional
 import uuid
 
 import paho.mqtt.client as mqtt
@@ -163,10 +164,12 @@ class MQTTClient:
         self.client.publish(address, json.dumps(status), qos=2)
         logger.critical(f"Device status published: address: {address}, {status}")
 
-    def publish_job_status(self, feedback_data: dict, job_id: str, status: str):
+    def publish_job_status(self, feedback_data: dict, job_id: str, status: str, return_info: Optional[str] = None):
         if self.mqtt_disable:
             return
-        jobdata = {"job_id": job_id, "data": feedback_data, "status": status}
+        if return_info is None:
+            return_info = "{}"
+        jobdata = {"job_id": job_id, "data": feedback_data, "status": status, "return_info": return_info}
         self.client.publish(f"labs/{MQConfig.lab_id}/job/list/", json.dumps(jobdata), qos=2)
 
     def publish_registry(self, device_id: str, device_info: dict):

unilabos/app/web/client.py

@@ -30,18 +30,18 @@ class HTTPClient:
             self.auth = MQConfig.lab_id
         info(f"HTTPClient 初始化完成: remote_addr={self.remote_addr}")
 
-    def resource_add(self, resources: List[Dict[str, Any]]) -> requests.Response:
+    def resource_add(self, resources: List[Dict[str, Any]], database_process_later:bool) -> requests.Response:
         """
         添加资源
 
         Args:
             resources: 要添加的资源列表
-
+            database_process_later: 后台处理资源
         Returns:
             Response: API响应对象
         """
         response = requests.post(
-            f"{self.remote_addr}/lab/resource/",
+            f"{self.remote_addr}/lab/resource/?database_process_later={1 if database_process_later else 0}",
             json=resources,
             headers={"Authorization": f"lab {self.auth}"},
             timeout=5,

unilabos/devices/liquid_handling/liquid_handler_abstract.py

@@ -6,13 +6,8 @@ import asyncio
 import time
 
 from pylabrobot.liquid_handling import LiquidHandler
-from pylabrobot.resources import (
+from pylabrobot.resources import Resource, TipRack, Container, Coordinate, Well
-    Resource,
+
-    TipRack,
-    Container,
-    Coordinate,
-    Well
-)
 
 class LiquidHandlerAbstract(LiquidHandler):
     """Extended LiquidHandler with additional operations."""
@@ -21,6 +16,19 @@ class LiquidHandlerAbstract(LiquidHandler):
     # REMOVE LIQUID --------------------------------------------------
     # ---------------------------------------------------------------
 
+    async def create_protocol(
+        self,
+        protocol_name: str,
+        protocol_description: str,
+        protocol_version: str,
+        protocol_author: str,
+        protocol_date: str,
+        protocol_type: str,
+        none_keys: List[str] = [],
+    ):
+        """Create a new protocol with the given metadata."""
+        pass
+
     async def remove_liquid(
         self,
         vols: List[float],
@@ -35,8 +43,8 @@ class LiquidHandlerAbstract(LiquidHandler):
         spread: Optional[Literal["wide", "tight", "custom"]] = "wide",
         delays: Optional[List[int]] = None,
         is_96_well: Optional[bool] = False,
-        top: Optional[List(float)] = None,
+        top: Optional[List[float]] = None,
-        none_keys: List[str] = []
+        none_keys: List[str] = [],
     ):
         """A complete *remove* (aspirate → waste) operation."""
         trash = self.deck.get_trash_area()
@@ -48,7 +56,7 @@ class LiquidHandlerAbstract(LiquidHandler):
                     raise ValueError("Length of `vols` must match `sources`.")
 
                 for src, vol in zip(sources, vols):
-                    self.move_to(src, dis_to_top=top[0] if top else 0)
+                    await self.move_to(src, dis_to_top=top[0] if top else 0)
                     tip = next(self.current_tip)
                     await self.pick_up_tips(tip)
                     await self.aspirate(
@@ -100,7 +108,7 @@ class LiquidHandlerAbstract(LiquidHandler):
         mix_vol: Optional[int] = None,
         mix_rate: Optional[int] = None,
         mix_liquid_height: Optional[float] = None,
-        none_keys: List[str] = []
+        none_keys: List[str] = [],
     ):
         """A complete *add* (aspirate reagent → dispense into targets) operation."""
 
@@ -122,7 +130,7 @@ class LiquidHandlerAbstract(LiquidHandler):
                         offsets=[offsets[0]] if offsets else None,
                         liquid_height=[liquid_height[0]] if liquid_height else None,
                         blow_out_air_volume=[blow_out_air_volume[0]] if blow_out_air_volume else None,
-                        spread=spread
+                        spread=spread,
                     )
                     if delays is not None:
                         await self.custom_delay(seconds=delays[0])
@@ -144,7 +152,8 @@ class LiquidHandlerAbstract(LiquidHandler):
                         mix_vol=mix_vol,
                         offsets=offsets if offsets else None,
                         height_to_bottom=mix_liquid_height if mix_liquid_height else None,
-                        mix_rate=mix_rate if mix_rate else None)
+                        mix_rate=mix_rate if mix_rate else None,
+                    )
                     if delays is not None:
                         await self.custom_delay(seconds=delays[1])
                     await self.touch_tip(targets[_])
@@ -158,13 +167,13 @@ class LiquidHandlerAbstract(LiquidHandler):
     # ---------------------------------------------------------------
     async def transfer_liquid(
         self,
-        asp_vols: Union[List[float], float],
-        dis_vols: Union[List[float], float],
         sources: Sequence[Container],
         targets: Sequence[Container],
         tip_racks: Sequence[TipRack],
         *,
         use_channels: Optional[List[int]] = None,
+        asp_vols: Union[List[float], float],
+        dis_vols: Union[List[float], float],
         asp_flow_rates: Optional[List[Optional[float]]] = None,
         dis_flow_rates: Optional[List[Optional[float]]] = None,
         offsets: Optional[List[Coordinate]] = None,
@@ -179,7 +188,7 @@ class LiquidHandlerAbstract(LiquidHandler):
         mix_rate: Optional[int] = None,
         mix_liquid_height: Optional[float] = None,
         delays: Optional[List[int]] = None,
-        none_keys: List[str] = []
+        none_keys: List[str] = [],
     ):
         """Transfer liquid from each *source* well/plate to the corresponding *target*.
 
@@ -207,8 +216,9 @@ class LiquidHandlerAbstract(LiquidHandler):
                     raise ValueError("`sources`, `targets`, and `vols` must have the same length.")
 
                 tip_iter = self.iter_tips(tip_racks)
-                for src, tgt, asp_vol, asp_flow_rate, dis_vol, dis_flow_rate in (
+                for src, tgt, asp_vol, asp_flow_rate, dis_vol, dis_flow_rate in zip(
-                        zip(sources, targets, asp_vols, asp_flow_rates, dis_vols, dis_flow_rates)):
+                    sources, targets, asp_vols, asp_flow_rates, dis_vols, dis_flow_rates
+                ):
                     tip = next(tip_iter)
                     await self.pick_up_tips(tip)
                     # Aspirate from source
@@ -247,9 +257,9 @@ class LiquidHandlerAbstract(LiquidHandler):
         except Exception as exc:
             raise RuntimeError(f"Liquid transfer failed: {exc}") from exc
 
-# ---------------------------------------------------------------
+    # ---------------------------------------------------------------
-# Helper utilities
+    # Helper utilities
-# ---------------------------------------------------------------
+    # ---------------------------------------------------------------
 
     async def custom_delay(self, seconds=0, msg=None):
         """
@@ -266,28 +276,26 @@ class LiquidHandlerAbstract(LiquidHandler):
                 print(f"Done: {msg}")
                 print(f"Current time: {time.strftime('%H:%M:%S')}")
 
-    async def touch_tip(self,
+    async def touch_tip(self, targets: Sequence[Container]):
-                        targets: Sequence[Container],
-                        ):
         """Touch the tip to the side of the well."""
         await self.aspirate(
             resources=[targets],
             vols=[0],
             use_channels=None,
             flow_rates=None,
-            offsets=[Coordinate(x=-targets.get_size_x()/2,y=0,z=0)],
+            offsets=[Coordinate(x=-targets.get_size_x() / 2, y=0, z=0)],
             liquid_height=None,
-            blow_out_air_volume=None
+            blow_out_air_volume=None,
         )
-        #await self.custom_delay(seconds=1) # In the simulation, we do not need to wait
+        # await self.custom_delay(seconds=1) # In the simulation, we do not need to wait
         await self.aspirate(
             resources=[targets],
             vols=[0],
             use_channels=None,
             flow_rates=None,
-            offsets=[Coordinate(x=targets.get_size_x()/2,y=0,z=0)],
+            offsets=[Coordinate(x=targets.get_size_x() / 2, y=0, z=0)],
             liquid_height=None,
-            blow_out_air_volume=None
+            blow_out_air_volume=None,
         )
 
     async def mix(
@@ -298,7 +306,7 @@ class LiquidHandlerAbstract(LiquidHandler):
         height_to_bottom: Optional[float] = None,
         offsets: Optional[Coordinate] = None,
         mix_rate: Optional[float] = None,
-        none_keys: List[str] = []
+        none_keys: List[str] = [],
     ):
         if mix_time is None:  # No mixing required
             return
@@ -333,7 +341,7 @@ class LiquidHandlerAbstract(LiquidHandler):
         tip_iter = self.iter_tips(tip_racks)
         self.current_tip = tip_iter
 
-    async def move_to(self, well: Well, dis_to_top: float = 0 , channel: int = 0):
+    async def move_to(self, well: Well, dis_to_top: float = 0, channel: int = 0):
         """
         Move a single channel to a specific well with a given z-height.
 
@@ -352,4 +360,3 @@ class LiquidHandlerAbstract(LiquidHandler):
         await self.move_channel_x(channel, abs_loc.x)
         await self.move_channel_y(channel, abs_loc.y)
         await self.move_channel_z(channel, abs_loc.z + well_height + dis_to_top)
-

unilabos/devices/liquid_handling/test liquid handler/convert_biomek.py

@@ -0,0 +1,154 @@
+
+import json
+from typing import Sequence, Optional, List, Union, Literal
+json_path = "/Users/guangxinzhang/Documents/Deep Potential/opentrons/convert/protocols/enriched_steps/sci-lucif-assay4.json"
+
+with open(json_path, "r") as f:
+    data = json.load(f)
+
+transfer_example = data[0]
+#print(transfer_example)
+
+
+temp_protocol = []
+TipLocation = "BC1025F"  # Assuming this is a fixed tip location for the transfer
+sources = transfer_example["sources"]  # Assuming sources is a list of Container objects
+targets = transfer_example["targets"]  # Assuming targets is a list of Container objects
+tip_racks = transfer_example["tip_racks"]  # Assuming tip_racks is a list of TipRack objects
+asp_vols = transfer_example["asp_vols"]  # Assuming asp_vols is a list of volumes
+solvent = "PBS"
+
+def transfer_liquid(
+        #self,
+        sources,#: Sequence[Container],
+        targets,#: Sequence[Container],
+        tip_racks,#: Sequence[TipRack],
+        TipLocation,
+        # *,
+        # use_channels: Optional[List[int]] = None,
+        asp_vols: Union[List[float], float],
+        solvent: Optional[str] = None,
+        # dis_vols: Union[List[float], float],
+        # asp_flow_rates: Optional[List[Optional[float]]] = None,
+        # dis_flow_rates: Optional[List[Optional[float]]] = None,
+        # offsets,#: Optional[List[]] = None,
+        # touch_tip: bool = False,
+        # liquid_height: Optional[List[Optional[float]]] = None,
+        # blow_out_air_volume: Optional[List[Optional[float]]] = None,
+        # spread: Literal["wide", "tight", "custom"] = "wide",
+        # is_96_well: bool = False,
+        # mix_stage: Optional[Literal["none", "before", "after", "both"]] = "none",
+        # mix_times,#: Optional[list() = None,
+        # mix_vol: Optional[int] = None,
+        # mix_rate: Optional[int] = None,
+        # mix_liquid_height: Optional[float] = None,
+        # delays: Optional[List[int]] = None,
+        # none_keys: List[str] = []
+    ):
+        # -------- Build Biomek transfer step --------
+        # 1) Construct default parameter scaffold (values mirror Biomek “Transfer” block).
+
+        transfer_params = {
+            "Span8": False,
+            "Pod": "Pod1",
+            "items": {},                       # to be filled below
+            "Wash": False,
+            "Dynamic?": True,
+            "AutoSelectActiveWashTechnique": False,
+            "ActiveWashTechnique": "",
+            "ChangeTipsBetweenDests": False,
+            "ChangeTipsBetweenSources": False,
+            "DefaultCaption": "",              # filled after we know first pair/vol
+            "UseExpression": False,
+            "LeaveTipsOn": False,
+            "MandrelExpression": "",
+            "Repeats": "1",
+            "RepeatsByVolume": False,
+            "Replicates": "1",
+            "ShowTipHandlingDetails": False,
+            "ShowTransferDetails": True,
+            "Solvent": "Water",
+            "Span8Wash": False,
+            "Span8WashVolume": "2",
+            "Span8WasteVolume": "1",
+            "SplitVolume": False,
+            "SplitVolumeCleaning": False,
+            "Stop": "Destinations",
+            "TipLocation": "BC1025F",
+            "UseCurrentTips": False,
+            "UseDisposableTips": True,
+            "UseFixedTips": False,
+            "UseJIT": True,
+            "UseMandrelSelection": True,
+            "UseProbes": [True, True, True, True, True, True, True, True],
+            "WashCycles": "1",
+            "WashVolume": "110%",
+            "Wizard": False
+        }
+
+        items: dict = {}
+        for idx, (src, dst) in enumerate(zip(sources, targets)):
+            items[str(idx)] = {
+                "Source": str(src),
+                "Destination": str(dst),
+                "Volume": asp_vols[idx] 
+            }
+        transfer_params["items"] = items
+        transfer_params["Solvent"] =  solvent if solvent else "Water"
+        transfer_params["TipLocation"] = TipLocation
+
+        if len(tip_racks) == 1:
+             transfer_params['UseCurrentTips'] = True
+        elif len(tip_racks) > 1:
+            transfer_params["ChangeTipsBetweenDests"] = True
+
+        return transfer_params
+
+action = transfer_liquid(sources=sources,targets=targets,tip_racks=tip_racks, asp_vols=asp_vols,solvent = solvent, TipLocation=TipLocation)
+print(json.dumps(action,indent=2))  
+# print(action)
+
+
+
+
+"""
+      "transfer": {
+
+        "items": {},
+        "Wash": false,
+        "Dynamic?": true,
+        "AutoSelectActiveWashTechnique": false,
+        "ActiveWashTechnique": "",
+        "ChangeTipsBetweenDests": true,
+        "ChangeTipsBetweenSources": false,
+        "DefaultCaption": "Transfer 100 µL from P13 to P3",
+        "UseExpression": false,
+        "LeaveTipsOn": false,
+        "MandrelExpression": "",
+        "Repeats": "1",
+        "RepeatsByVolume": false,
+        "Replicates": "1",
+        "ShowTipHandlingDetails": true,
+        "ShowTransferDetails": true,
+        
+        "Span8Wash": false,
+        "Span8WashVolume": "2",
+        "Span8WasteVolume": "1",
+        "SplitVolume": false,
+        "SplitVolumeCleaning": false,
+        "Stop": "Destinations",
+        "TipLocation": "BC1025F",
+        "UseCurrentTips": false,
+        "UseDisposableTips": false,
+        "UseFixedTips": false,
+        "UseJIT": true,
+        "UseMandrelSelection": true,
+        "UseProbes": [true, true, true, true, true, true, true, true],
+        "WashCycles": "3",
+        "WashVolume": "110%",
+        "Wizard": false
+"""
+
+
+
+

unilabos/registry/devices/liquid_handler.yaml

@@ -1,5 +1,6 @@
 liquid_handler:
   description: Liquid handler device controlled by pylabrobot
+  icon: icon_yiyezhan.webp
   class:
     module: unilabos.devices.liquid_handling.liquid_handler_abstract:LiquidHandlerAbstract
     type: python
@@ -22,8 +23,8 @@ liquid_handler:
           is_96_well: is_96_well
           top: top
           none_keys: none_keys
-        feedback: { }
+        feedback: {}
-        result: { }
+        result: {}
       add_liquid:
         type: LiquidHandlerAdd
         goal:
@@ -43,8 +44,8 @@ liquid_handler:
           mix_rate: mix_rate
           mix_liquid_height: mix_liquid_height
           none_keys: none_keys
-        feedback: { }
+        feedback: {}
-        result: { }
+        result: {}
       transfer_liquid:
         type: LiquidHandlerTransfer
         goal:
@@ -69,8 +70,8 @@ liquid_handler:
           mix_liquid_height: mix_liquid_height
           delays: delays
           none_keys: none_keys
-        feedback: { }
+        feedback: {}
-        result: { }
+        result: {}
       mix:
         type: LiquidHandlerMix
         goal:
@@ -81,16 +82,16 @@ liquid_handler:
           offsets: offsets
           mix_rate: mix_rate
           none_keys: none_keys
-        feedback: { }
+        feedback: {}
-        result: { }
+        result: {}
       move_to:
         type: LiquidHandlerMoveTo
         goal:
           well: well
           dis_to_top: dis_to_top
           channel: channel
-        feedback: { }
+        feedback: {}
-        result: { }
+        result: {}
       aspirate:
         type: LiquidHandlerAspirate
         goal:
@@ -245,6 +246,21 @@ liquid_handler:
           target_vols: target_vols
           aspiration_flow_rate: aspiration_flow_rate
           dispense_flow_rates: dispense_flow_rates
+  handles:
+    input:
+    - handler_key: liquid-input
+      label: Liquid Input
+      data_type: resource
+      io_type: target
+      data_source: handle
+      data_key: liquid
+    output:
+    - handler_key: liquid-output
+      label: Liquid Output
+      data_type: resource
+      io_type: source
+      data_source: executor
+      data_key: liquid
   schema:
     type: object
     properties:
@@ -272,3 +288,174 @@ liquid_handler.revvity:
           status: status
         result:
           success: success
+
+liquid_handler.biomek:
+  description: Biomek液体处理器设备，基于pylabrobot控制
+  icon: icon_yiyezhan.webp
+  class:
+    module: unilabos.devices.liquid_handling.biomek:LiquidHandlerBiomek
+    type: python
+    status_types: {}
+    action_value_mappings:
+      create_protocol:
+        type: LiquidHandlerProtocolCreation
+        goal:
+          protocol_name: protocol_name
+          protocol_description: protocol_description
+          protocol_version: protocol_version
+          protocol_author: protocol_author
+          protocol_date: protocol_date
+          protocol_type: protocol_type
+          none_keys: none_keys
+        feedback: {}
+        result: {}
+      run_protocol:
+        type: EmptyIn
+        goal: {}
+        feedback: {}
+        result: {}
+      transfer_liquid:
+        type: LiquidHandlerTransfer
+        goal:
+          asp_vols: asp_vols
+          dis_vols: dis_vols
+          sources: sources
+          targets: targets
+          tip_racks: tip_racks
+          use_channels: use_channels
+          asp_flow_rates: asp_flow_rates
+          dis_flow_rates: dis_flow_rates
+          offsets: offsets
+          touch_tip: touch_tip
+          liquid_height: liquid_height
+          blow_out_air_volume: blow_out_air_volume
+          spread: spread
+          is_96_well: is_96_well
+          mix_stage: mix_stage
+          mix_times: mix_times
+          mix_vol: mix_vol
+          mix_rate: mix_rate
+          mix_liquid_height: mix_liquid_height
+          delays: delays
+          none_keys: none_keys
+        feedback: {}
+        result: {}
+        handles:
+          input:
+            - handler_key: liquid-input
+              label: Liquid Input
+              data_type: resource
+              io_type: target
+              data_source: handle
+              data_key: liquid
+          output:
+            - handler_key: liquid-output
+              label: Liquid Output
+              data_type: resource
+              io_type: source
+              data_source: executor
+              data_key: liquid
+      transfer_biomek:
+        type: LiquidHandlerTransferBiomek
+        goal:
+          source: source
+          target: target
+          tip_rack: tip_rack
+          volume: volume
+          aspirate_techniques: aspirate_techniques
+          dispense_techniques: dispense_techniques
+        feedback: {}
+        result: {}
+        handles:
+          input:
+            - handler_key: sources
+              label: sources
+              data_type: resource
+              data_source: handle
+              data_key: liquid
+            - handler_key: targets
+              label: targets
+              data_type: resource
+              data_source: executor
+              data_key: liquid
+            - handler_key: tip_rack
+              label: tip_rack
+              data_type: resource
+              data_source: executor
+              data_key: liquid
+          output:
+            - handler_key: sources_out
+              label: sources
+              data_type: resource
+              data_source: handle
+              data_key: liquid
+            - handler_key: targets_out
+              label: targets
+              data_type: resource
+              data_source: executor
+              data_key: liquid
+      oscillation_biomek:
+        type: LiquidHandlerOscillateBiomek
+        goal:
+          rpm: rpm
+          time: time
+        feedback: {}
+        result: {}
+        handles:
+          input:
+            - handler_key: plate
+              label: plate
+              data_type: resource
+              data_source: handle
+              data_key: liquid
+          output:
+            - handler_key: plate_out
+              label: plate
+              data_type: resource
+              data_source: handle
+              data_key: liquid
+      move_biomek:
+        type: LiquidHandlerMoveBiomek
+        goal:
+          source: resource
+          target: target
+        feedback: {}
+        result:
+          name: name
+        handles:
+          input:
+            - handler_key: sources
+              label: sources
+              data_type: resource
+              data_source: handle
+              data_key: liquid
+          output:
+            - handler_key: targets
+              label: targets
+              data_type: resource
+              data_source: handle
+              data_key: liquid
+      incubation_biomek:
+        type: LiquidHandlerIncubateBiomek
+        goal:
+          time: time
+        feedback: {}
+        result: {}
+        handles:
+          input:
+            - handler_key: plate
+              label: plate
+              data_type: resource
+              data_source: handle
+              data_key: liquid
+          output:
+            - handler_key: plate_out
+              label: plate
+              data_type: resource
+              data_source: handle
+              data_key: liquid
+  schema:
+    type: object
+    properties: {}
+    required: []
+    additionalProperties: false

unilabos/registry/devices/pump_and_valve.yaml

@@ -28,12 +28,43 @@ syringe_pump_with_valve.runze:
     - valve_position
     additionalProperties: false
 
-
 solenoid_valve.mock:
   description: Mock solenoid valve
   class:
     module: unilabos.devices.pump_and_valve.solenoid_valve_mock:SolenoidValveMock
     type: python
+    status_types:
+      status: String
+      valve_position: String
+    action_value_mappings:
+      open:
+        type: EmptyIn
+        goal: {}
+        feedback: {}
+        result: {}
+      close:
+        type: EmptyIn
+        goal: {}
+        feedback: {}
+        result: {}
+  handles:
+    input:
+    - handler_key: fluid-input
+      label: Fluid Input
+      data_type: fluid
+    output:
+    - handler_key: fluid-output
+      label: Fluid Output
+      data_type: fluid
+  init_param_schema:
+    type: object
+    properties:
+      port:
+        type: string
+        description: "通信端口"
+        default: "COM6"
+    required:
+    - port
 
 solenoid_valve:
   description: Solenoid valve

unilabos/registry/devices/vacuum_and_purge.yaml

@@ -22,9 +22,76 @@ vacuum_pump.mock:
           string: string
         feedback: {}
         result: {}
+  handles:
+    input:
+    - handler_key: fluid-input
+      label: Fluid Input
+      data_type: fluid
+      io_type: target
+      data_source: handle
+      data_key: fluid_in
+    output:
+    - handler_key: fluid-output
+      label: Fluid Output
+      data_type: fluid
+      io_type: source
+      data_source: executor
+      data_key: fluid_out
+  init_param_schema:
+    type: object
+    properties:
+      port:
+        type: string
+        description: "通信端口"
+        default: "COM6"
+    required:
+    - port
 
 gas_source.mock:
   description: Mock gas source
   class:
     module: unilabos.devices.pump_and_valve.vacuum_pump_mock:VacuumPumpMock
     type: python
+    status_types:
+      status: String
+    action_value_mappings:
+      open:
+        type: EmptyIn
+        goal: {}
+        feedback: {}
+        result: {}
+      close:
+        type: EmptyIn
+        goal: {}
+        feedback: {}
+        result: {}
+      set_status:
+        type: StrSingleInput
+        goal:
+          string: string
+        feedback: {}
+        result: {}
+  handles:
+    input:
+    - handler_key: fluid-input
+      label: Fluid Input
+      data_type: fluid
+      io_type: target
+      data_source: handle
+      data_key: fluid_in
+    output:
+    - handler_key: fluid-output
+      label: Fluid Output
+      data_type: fluid
+      io_type: source
+      data_source: executor
+      data_key: fluid_out
+  init_param_schema:
+    type: object
+    properties:
+      port:
+        type: string
+        description: "通信端口"
+        default: "COM6"
+    required:
+    - port

unilabos/registry/registry.py

@@ -25,9 +25,7 @@ class Registry:
         self.ResourceCreateFromOuterEasy = self._replace_type_with_class(
             "ResourceCreateFromOuterEasy", "host_node", f"动作 create_resource"
         )
-        self.EmptyIn = self._replace_type_with_class(
+        self.EmptyIn = self._replace_type_with_class("EmptyIn", "host_node", f"")
-            "EmptyIn", "host_node", f""
-        )
         self.device_type_registry = {}
         self.resource_type_registry = {}
         self._setup_called = False  # 跟踪setup是否已调用
@@ -66,6 +64,7 @@ class Registry:
                                 "goal_default": yaml.safe_load(
                                     io.StringIO(get_yaml_from_goal_type(self.ResourceCreateFromOuter.Goal))
                                 ),
+                                "handles": {},
                             },
                             "create_resource": {
                                 "type": self.ResourceCreateFromOuterEasy,
@@ -86,6 +85,15 @@ class Registry:
                                 "goal_default": yaml.safe_load(
                                     io.StringIO(get_yaml_from_goal_type(self.ResourceCreateFromOuterEasy.Goal))
                                 ),
+                                "handles": {
+                                    "output": [{
+                                        "handler_key": "Labware",
+                                        "label": "Labware",
+                                        "data_type": "resource",
+                                        "data_source": "handle",
+                                        "data_key": "liquid"
+                                    }]
+                                },
                             },
                             "test_latency": {
                                 "type": self.EmptyIn,
@@ -94,11 +102,14 @@ class Registry:
                                 "result": {"latency_ms": "latency_ms", "time_diff_ms": "time_diff_ms"},
                                 "schema": ros_action_to_json_schema(self.EmptyIn),
                                 "goal_default": {},
+                                "handles": {},
                             },
                         },
                     },
                     "icon": "icon_device.webp",
                     "registry_type": "device",
+                    "handles": [],
+                    "init_param_schema": {},
                     "schema": {"properties": {}, "additionalProperties": False, "type": "object"},
                     "file_path": "/",
                 }
@@ -132,6 +143,10 @@ class Registry:
                         resource_info["description"] = ""
                     if "icon" not in resource_info:
                         resource_info["icon"] = ""
+                    if "handles" not in resource_info:
+                        resource_info["handles"] = []
+                    if "init_param_schema" not in resource_info:
+                        resource_info["init_param_schema"] = {}
                     resource_info["registry_type"] = "resource"
                 self.resource_type_registry.update(data)
                 logger.debug(
@@ -194,6 +209,10 @@ class Registry:
                         device_config["description"] = ""
                     if "icon" not in device_config:
                         device_config["icon"] = ""
+                    if "handles" not in device_config:
+                        device_config["handles"] = []
+                    if "init_param_schema" not in device_config:
+                        device_config["init_param_schema"] = {}
                     device_config["registry_type"] = "device"
                     if "class" in device_config:
                         # 处理状态类型
@@ -206,6 +225,8 @@ class Registry:
                         # 处理动作值映射
                         if "action_value_mappings" in device_config["class"]:
                             for action_name, action_config in device_config["class"]["action_value_mappings"].items():
+                                if "handles" not in action_config:
+                                    action_config["handles"] = []
                                 if "type" in action_config:
                                     action_config["type"] = self._replace_type_with_class(
                                         action_config["type"], device_id, f"动作 {action_name}"

unilabos/ros/msgs/message_converter.py

@@ -131,7 +131,7 @@ _msg_converter: Dict[Type, Any] = {
     Bool: lambda x: Bool(data=bool(x)),
     str: str,
     String: lambda x: String(data=str(x)),
-    Point: lambda x: Point(x=x.x, y=x.y, z=x.z),
+    Point: lambda x: Point(x=x.x, y=x.y, z=x.z) if not isinstance(x, dict) else Point(x=x.get("x", 0), y=x.get("y", 0), z=x.get("z", 0)),
     Resource: lambda x: Resource(
         id=x.get("id", ""),
         name=x.get("name", ""),

unilabos/ros/nodes/base_device_node.py

@@ -1,5 +1,4 @@
 import copy
-import functools
 import json
 import threading
 import time
@@ -20,16 +19,29 @@ from rclpy.service import Service
 from unilabos_msgs.action import SendCmd
 from unilabos_msgs.srv._serial_command import SerialCommand_Request, SerialCommand_Response
 
-from unilabos.resources.graphio import convert_resources_to_type, convert_resources_from_type, resource_ulab_to_plr, \
+from unilabos.resources.graphio import (
-    initialize_resources, list_to_nested_dict, dict_to_tree, resource_plr_to_ulab, tree_to_list
+    convert_resources_to_type,
+    convert_resources_from_type,
+    resource_ulab_to_plr,
+    initialize_resources,
+    dict_to_tree,
+    resource_plr_to_ulab,
+    tree_to_list,
+)
 from unilabos.ros.msgs.message_converter import (
     convert_to_ros_msg,
     convert_from_ros_msg,
     convert_from_ros_msg_with_mapping,
-    convert_to_ros_msg_with_mapping, ros_action_to_json_schema,
+    convert_to_ros_msg_with_mapping,
 )
-from unilabos_msgs.srv import ResourceAdd, ResourceGet, ResourceDelete, ResourceUpdate, ResourceList, \
+from unilabos_msgs.srv import (
-    SerialCommand  # type: ignore
+    ResourceAdd,
+    ResourceGet,
+    ResourceDelete,
+    ResourceUpdate,
+    ResourceList,
+    SerialCommand,
+)  # type: ignore
 from unilabos_msgs.msg import Resource  # type: ignore
 
 from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker
@@ -37,7 +49,7 @@ from unilabos.ros.x.rclpyx import get_event_loop
 from unilabos.ros.utils.driver_creator import ProtocolNodeCreator, PyLabRobotCreator, DeviceClassCreator
 from unilabos.utils.async_util import run_async_func
 from unilabos.utils.log import info, debug, warning, error, critical, logger
-from unilabos.utils.type_check import get_type_class, TypeEncoder
+from unilabos.utils.type_check import get_type_class, TypeEncoder, serialize_result_info
 
 T = TypeVar("T")
 
@@ -292,7 +304,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 self.create_ros_action_server(action_name, action_value_mapping)
 
         # 创建线程池执行器
-        self._executor = ThreadPoolExecutor(max_workers=max(len(action_value_mappings), 1), thread_name_prefix=f"ROSDevice{self.device_id}")
+        self._executor = ThreadPoolExecutor(
+            max_workers=max(len(action_value_mappings), 1), thread_name_prefix=f"ROSDevice{self.device_id}"
+        )
 
         # 创建资源管理客户端
         self._resource_clients: Dict[str, Client] = {
@@ -334,7 +348,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 other_calling_param["slot"] = slot
             # 本地拿到这个物料，可能需要先做初始化?
             if isinstance(resources, list):
-                if len(resources) == 1 and isinstance(resources[0], list) and not initialize_full:  # 取消，不存在的情况
+                if (
+                    len(resources) == 1 and isinstance(resources[0], list) and not initialize_full
+                ):  # 取消，不存在的情况
                     # 预先initialize过，以整组的形式传入
                     request.resources = [convert_to_ros_msg(Resource, resource_) for resource_ in resources[0]]
                 elif initialize_full:
@@ -349,6 +365,20 @@ class BaseROS2DeviceNode(Node, Generic[T]):
             response = rclient.call(request)
             # 应该先add_resource了
             res.response = "OK"
+            # 如果driver自己就有assign的方法，那就使用driver自己的assign方法
+            if hasattr(self.driver_instance, "create_resource"):
+                create_resource_func = getattr(self.driver_instance, "create_resource")
+                create_resource_func(
+                    resource_tracker=self.resource_tracker,
+                    resources=request.resources,
+                    bind_parent_id=bind_parent_id,
+                    bind_location=location,
+                    liquid_input_slot=LIQUID_INPUT_SLOT,
+                    liquid_type=ADD_LIQUID_TYPE,
+                    liquid_volume=LIQUID_VOLUME,
+                    slot_on_deck=slot,
+                )
+                return res
             # 接下来该根据bind_parent_id进行assign了，目前只有plr可以进行assign，不然没有办法输入到物料系统中
             resource = self.resource_tracker.figure_resource({"name": bind_parent_id})
             # request.resources = [convert_to_ros_msg(Resource, resources)]
@@ -359,6 +389,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 from pylabrobot.resources import Coordinate
                 from pylabrobot.resources import OTDeck
                 from pylabrobot.resources import Plate
+
                 contain_model = not isinstance(resource, Deck)
                 if isinstance(resource, ResourcePLR):
                     # resources.list()
@@ -366,25 +397,38 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                     plr_instance = resource_ulab_to_plr(resources_tree[0], contain_model)
                     if isinstance(plr_instance, Plate):
                         empty_liquid_info_in = [(None, 0)] * plr_instance.num_items
-                        for liquid_type, liquid_volume, liquid_input_slot in zip(ADD_LIQUID_TYPE, LIQUID_VOLUME, LIQUID_INPUT_SLOT):
+                        for liquid_type, liquid_volume, liquid_input_slot in zip(
+                            ADD_LIQUID_TYPE, LIQUID_VOLUME, LIQUID_INPUT_SLOT
+                        ):
                             empty_liquid_info_in[liquid_input_slot] = (liquid_type, liquid_volume)
                         plr_instance.set_well_liquids(empty_liquid_info_in)
                     if isinstance(resource, OTDeck) and "slot" in other_calling_param:
                         resource.assign_child_at_slot(plr_instance, **other_calling_param)
                     else:
                         _discard_slot = other_calling_param.pop("slot", -1)
-                        resource.assign_child_resource(plr_instance, Coordinate(location["x"], location["y"], location["z"]), **other_calling_param)
+                        resource.assign_child_resource(
-                    request2.resources = [convert_to_ros_msg(Resource, r) for r in tree_to_list([resource_plr_to_ulab(resource)])]
+                            plr_instance,
+                            Coordinate(location["x"], location["y"], location["z"]),
+                            **other_calling_param,
+                        )
+                    request2.resources = [
+                        convert_to_ros_msg(Resource, r) for r in tree_to_list([resource_plr_to_ulab(resource)])
+                    ]
                     rclient2.call(request2)
                 # 发送给ResourceMeshManager
                 action_client = ActionClient(
-                    self, SendCmd, "/devices/resource_mesh_manager/add_resource_mesh", callback_group=self.callback_group
+                    self,
+                    SendCmd,
+                    "/devices/resource_mesh_manager/add_resource_mesh",
+                    callback_group=self.callback_group,
                 )
                 goal = SendCmd.Goal()
-                goal.command = json.dumps({
+                goal.command = json.dumps(
+                    {
                         "resources": resources,
                         "bind_parent_id": bind_parent_id,
-                })
+                    }
+                )
                 future = action_client.send_goal_async(goal, goal_uuid=uuid.uuid4())
 
                 def done_cb(*args):
@@ -401,10 +445,16 @@ class BaseROS2DeviceNode(Node, Generic[T]):
         # noinspection PyTypeChecker
         self._service_server: Dict[str, Service] = {
             "query_host_name": self.create_service(
-                SerialCommand, f"/srv{self.namespace}/query_host_name", query_host_name_cb, callback_group=self.callback_group
+                SerialCommand,
+                f"/srv{self.namespace}/query_host_name",
+                query_host_name_cb,
+                callback_group=self.callback_group,
             ),
             "append_resource": self.create_service(
-                SerialCommand, f"/srv{self.namespace}/append_resource", append_resource, callback_group=self.callback_group
+                SerialCommand,
+                f"/srv{self.namespace}/append_resource",
+                append_resource,
+                callback_group=self.callback_group,
             ),
         }
 
@@ -433,6 +483,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
         registered_devices[self.device_id] = device_info
         from unilabos.config.config import BasicConfig
         from unilabos.ros.nodes.presets.host_node import HostNode
+
         if not BasicConfig.is_host_mode:
             sclient = self.create_client(SerialCommand, "/node_info_update")
             # 启动线程执行发送任务
@@ -440,7 +491,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 target=self.send_slave_node_info,
                 args=(sclient,),
                 daemon=True,
-                name=f"ROSDevice{self.device_id}_send_slave_node_info"
+                name=f"ROSDevice{self.device_id}_send_slave_node_info",
             ).start()
         else:
             host_node = HostNode.get_instance(0)
@@ -451,12 +502,18 @@ class BaseROS2DeviceNode(Node, Generic[T]):
         sclient.wait_for_service()
         request = SerialCommand.Request()
         from unilabos.config.config import BasicConfig
-        request.command = json.dumps({
+
+        request.command = json.dumps(
+            {
                 "SYNC_SLAVE_NODE_INFO": {
                     "machine_name": BasicConfig.machine_name,
                     "type": "slave",
-                "edge_device_id": self.device_id
+                    "edge_device_id": self.device_id,
-            }}, ensure_ascii=False, cls=TypeEncoder)
+                }
+            },
+            ensure_ascii=False,
+            cls=TypeEncoder,
+        )
 
         # 发送异步请求并等待结果
         future = sclient.call_async(request)
@@ -529,6 +586,11 @@ class BaseROS2DeviceNode(Node, Generic[T]):
         """创建动作执行回调函数"""
 
         async def execute_callback(goal_handle: ServerGoalHandle):
+            # 初始化结果信息变量
+            execution_error = ""
+            execution_success = False
+            action_return_value = None
+
             self.lab_logger().info(f"执行动作: {action_name}")
             goal = goal_handle.request
 
@@ -568,7 +630,11 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                                     current_resources.extend(response.resources)
                             else:
                                 r = ResourceGet.Request()
-                                r.id = action_kwargs[k]["id"] if v == "unilabos_msgs/Resource" else action_kwargs[k][0]["id"]
+                                r.id = (
+                                    action_kwargs[k]["id"]
+                                    if v == "unilabos_msgs/Resource"
+                                    else action_kwargs[k][0]["id"]
+                                )
                                 r.with_children = True
                                 response = await self._resource_clients["resource_get"].call_async(r)
                                 current_resources.extend(response.resources)
@@ -591,7 +657,19 @@ class BaseROS2DeviceNode(Node, Generic[T]):
             if asyncio.iscoroutinefunction(ACTION):
                 try:
                     self.lab_logger().info(f"异步执行动作 {ACTION}")
-                    future = ROS2DeviceNode.run_async_func(ACTION, **action_kwargs)
+                    future = ROS2DeviceNode.run_async_func(ACTION, trace_error=False, **action_kwargs)
+
+                    def _handle_future_exception(fut):
+                        nonlocal execution_error, execution_success, action_return_value
+                        try:
+                            action_return_value = fut.result()
+                            execution_success = True
+                        except Exception as e:
+                            execution_error = traceback.format_exc()
+                            error(f"异步任务 {ACTION.__name__} 报错了")
+                            error(traceback.format_exc())
+
+                    future.add_done_callback(_handle_future_exception)
                 except Exception as e:
                     self.lab_logger().error(f"创建异步任务失败: {traceback.format_exc()}")
                     raise e
@@ -600,9 +678,12 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 future = self._executor.submit(ACTION, **action_kwargs)
 
                 def _handle_future_exception(fut):
+                    nonlocal execution_error, execution_success, action_return_value
                     try:
-                        fut.result()
+                        action_return_value = fut.result()
+                        execution_success = True
                     except Exception as e:
+                        execution_error = traceback.format_exc()
                         error(f"同步任务 {ACTION.__name__} 报错了")
                         error(traceback.format_exc())
 
@@ -693,6 +774,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
             for attr_name in result_msg_types.keys():
                 if attr_name in ["success", "reached_goal"]:
                     setattr(result_msg, attr_name, True)
+                elif attr_name == "return_info":
+                    setattr(result_msg, attr_name, serialize_result_info(execution_error, execution_success, action_return_value))
 
             self.lab_logger().info(f"动作 {action_name} 完成并返回结果")
             return result_msg
@@ -738,8 +821,8 @@ class ROS2DeviceNode:
         return cls._loop
 
     @classmethod
-    def run_async_func(cls, func, **kwargs):
+    def run_async_func(cls, func, trace_error=True, **kwargs):
-        return run_async_func(func, loop=cls._loop, **kwargs)
+        return run_async_func(func, loop=cls._loop, trace_error=trace_error, **kwargs)
 
     @property
     def driver_instance(self):
@@ -791,7 +874,11 @@ class ROS2DeviceNode:
         self.resource_tracker = DeviceNodeResourceTracker()
 
         # use_pylabrobot_creator 使用 cls的包路径检测
-        use_pylabrobot_creator = driver_class.__module__.startswith("pylabrobot") or driver_class.__name__ == "LiquidHandlerAbstract"
+        use_pylabrobot_creator = (
+            driver_class.__module__.startswith("pylabrobot")
+            or driver_class.__name__ == "LiquidHandlerAbstract"
+            or driver_class.__name__ == "LiquidHandlerBiomek"
+        )
 
         # TODO: 要在创建之前预先请求服务器是否有当前id的物料，放到resource_tracker中，让pylabrobot进行创建
         # 创建设备类实例

unilabos/ros/nodes/presets/host_node.py

@@ -151,7 +151,7 @@ class HostNode(BaseROS2DeviceNode):
             mqtt_client.publish_registry(device_info["id"], device_info)
         for resource_info in lab_registry.obtain_registry_resource_info():
             mqtt_client.publish_registry(resource_info["id"], resource_info)
-
+        time.sleep(1) # 等待MQTT连接稳定
         # 首次发现网络中的设备
         self._discover_devices()
 
@@ -203,8 +203,12 @@ class HostNode(BaseROS2DeviceNode):
         try:
             for bridge in self.bridges:
                 if hasattr(bridge, "resource_add"):
-                    self.lab_logger().info("[Host Node-Resource] Adding resources to bridge.")
+                    resource_start_time = time.time()
-                    resource_add_res = bridge.resource_add(add_schema(resource_with_parent_name))
+                    resource_add_res = bridge.resource_add(add_schema(resource_with_parent_name), True)
+                    resource_end_time = time.time()
+                    self.lab_logger().info(
+                        f"[Host Node-Resource] 物料上传 {round(resource_end_time - resource_start_time, 5) * 1000} ms"
+                    )
         except Exception as ex:
             self.lab_logger().error("[Host Node-Resource] 添加物料出错！")
             self.lab_logger().error(traceback.format_exc())
@@ -610,13 +614,21 @@ class HostNode(BaseROS2DeviceNode):
         """获取结果回调"""
         result_msg = future.result().result
         result_data = convert_from_ros_msg(result_msg)
+        status = "success"
+        try:
+            ret = json.loads(result_data.get("return_info", "{}"))  # 确保返回信息是有效的JSON
+            suc = ret.get("suc", False)
+            if not suc:
+                status = "failed"
+        except json.JSONDecodeError:
+            status = "failed"
         self.lab_logger().info(f"[Host Node] Result for {action_id} ({uuid_str}): success")
         self.lab_logger().debug(f"[Host Node] Result data: {result_data}")
 
         if uuid_str:
             for bridge in self.bridges:
                 if hasattr(bridge, "publish_job_status"):
-                    bridge.publish_job_status(result_data, uuid_str, "success")
+                    bridge.publish_job_status(result_data, uuid_str, status, result_data.get("return_info", "{}"))
 
     def cancel_goal(self, goal_uuid: str) -> None:
         """取消目标"""
@@ -856,7 +868,6 @@ class HostNode(BaseROS2DeviceNode):
         测试网络延迟的action实现
         通过5次ping-pong机制校对时间误差并计算实际延迟
         """
-        import time
         import uuid as uuid_module
 
         self.lab_logger().info("=" * 60)

unilabos/utils/async_util.py

@@ -5,7 +5,7 @@ from asyncio import get_event_loop
 from unilabos.utils.log import error
 
 
-def run_async_func(func, *, loop=None, **kwargs):
+def run_async_func(func, *, loop=None, trace_error=True, **kwargs):
     if loop is None:
         loop = get_event_loop()
 
@@ -17,5 +17,6 @@ def run_async_func(func, *, loop=None, **kwargs):
             error(traceback.format_exc())
 
     future = asyncio.run_coroutine_threadsafe(func(**kwargs), loop)
+    if trace_error:
         future.add_done_callback(_handle_future_exception)
     return future

unilabos/utils/type_check.py

@@ -1,4 +1,4 @@
-import collections
+import collections.abc
 import json
 from typing import get_origin, get_args
 
@@ -21,3 +21,46 @@ class TypeEncoder(json.JSONEncoder):
             return str(obj)[8:-2]
         return super().default(obj)
 
+
+class ResultInfoEncoder(json.JSONEncoder):
+    """专门用于处理任务执行结果信息的JSON编码器"""
+
+    def default(self, obj):
+        # 优先处理类型对象
+        if isinstance(obj, type):
+            return str(obj)[8:-2]
+
+        # 对于无法序列化的对象，统一转换为字符串
+        try:
+            # 尝试调用 __dict__ 或者其他序列化方法
+            if hasattr(obj, "__dict__"):
+                return obj.__dict__
+            elif hasattr(obj, "_asdict"):  # namedtuple
+                return obj._asdict()
+            elif hasattr(obj, "to_dict"):
+                return obj.to_dict()
+            elif hasattr(obj, "dict"):
+                return obj.dict()
+            else:
+                # 如果都不行，转换为字符串
+                return str(obj)
+        except Exception:
+            # 如果转换失败，直接返回字符串表示
+            return str(obj)
+
+
+def serialize_result_info(error: str, suc: bool, return_value=None) -> str:
+    """
+    序列化任务执行结果信息
+
+    Args:
+        error: 错误信息字符串
+        suc: 是否成功的布尔值
+        return_value: 返回值，可以是任何类型
+
+    Returns:
+        JSON字符串格式的结果信息
+    """
+    result_info = {"error": error, "suc": suc, "return_value": return_value}
+
+    return json.dumps(result_info, ensure_ascii=False, cls=ResultInfoEncoder)

unilabos_msgs/CMakeLists.txt

@@ -29,6 +29,8 @@ set(action_files
   "action/HeatChillStart.action"
   "action/HeatChillStop.action"
 
+  "action/LiquidHandlerProtocolCreation.action"
+
   "action/LiquidHandlerAspirate.action"
   "action/LiquidHandlerDiscardTips.action"
   "action/LiquidHandlerDispense.action"
@@ -44,6 +46,11 @@ set(action_files
   "action/LiquidHandlerStamp.action"
   "action/LiquidHandlerTransfer.action"
 
+  "action/LiquidHandlerTransferBiomek.action"
+  "action/LiquidHandlerIncubateBiomek.action"
+  "action/LiquidHandlerMoveBiomek.action"
+  "action/LiquidHandlerOscillateBiomek.action"
+
   "action/LiquidHandlerAdd.action"
   "action/LiquidHandlerMix.action"
   "action/LiquidHandlerMoveTo.action"

unilabos_msgs/action/AGVTransfer.action

@@ -4,6 +4,7 @@ string from_repo_position
 Resource to_repo
 string to_repo_position
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/Clean.action

@@ -5,6 +5,7 @@ float64 volume # Optional. Volume of solvent to clean vessel with.
 float64 temp   # Optional. Temperature to heat vessel to while cleaning.
 int32 repeats  # Optional. Number of cleaning cycles to perform.
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/EmptyIn.action

@@ -1,4 +1,4 @@
 
 ---
-
+string return_info
 ---

unilabos_msgs/action/EvacuateAndRefill.action

@@ -3,6 +3,7 @@ string vessel
 string gas
 int32 repeats
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/Evaporate.action

@@ -5,6 +5,7 @@ float64 temp
 float64 time
 float64 stir_speed
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/FloatSingleInput.action

@@ -1,4 +1,5 @@
 float64 float_in
 ---
+string return_info
 bool success
 ---

unilabos_msgs/action/HeatChill.action

@@ -6,6 +6,7 @@ bool stir
 float64 stir_speed
 string purpose
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/HeatChillStart.action

@@ -3,6 +3,7 @@ string vessel
 float64 temp
 string purpose
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/HeatChillStop.action

@@ -1,6 +1,7 @@
 # Organic
 string vessel
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/IntSingleInput.action

@@ -1,4 +1,5 @@
 int32 int_input
 ---
+string return_info
 bool success
 ---

unilabos_msgs/action/LiquidHandlerAdd.action

@@ -15,6 +15,7 @@ int32 mix_rate
 float64 mix_liquid_height
 string[] none_keys
 ---
+string return_info
 bool success
 ---
 # 反馈

unilabos_msgs/action/LiquidHandlerAspirate.action

@@ -7,5 +7,6 @@ float64[] liquid_height
 float64[] blow_out_air_volume
 string spread
 ---
+string return_info
 bool success
 ---

unilabos_msgs/action/LiquidHandlerDiscardTips.action

@@ -3,6 +3,7 @@
 int32[] use_channels
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerDispense.action

@@ -8,6 +8,7 @@ int32[] blow_out_air_volume
 string spread
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerDropTips.action

@@ -6,6 +6,7 @@ geometry_msgs/Point[] offsets
 bool allow_nonzero_volume
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerDropTips96.action

@@ -5,6 +5,7 @@ geometry_msgs/Point offset
 bool allow_nonzero_volume
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerIncubateBiomek.action

@@ -0,0 +1,6 @@
+int32 time
+
+---
+string return_info
+bool success
+---

unilabos_msgs/action/LiquidHandlerMix.action

@@ -6,6 +6,7 @@ geometry_msgs/Point[] offsets
 float64 mix_rate
 string[] none_keys
 ---
+string return_info
 bool success
 ---
 # 反馈

unilabos_msgs/action/LiquidHandlerMoveBiomek.action

@@ -0,0 +1,7 @@
+string source
+string target
+
+---
+string return_info
+bool success
+---

unilabos_msgs/action/LiquidHandlerMoveLid.action

@@ -12,6 +12,7 @@ string put_direction
 float64 pickup_distance_from_top
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerMovePlate.action

@@ -13,6 +13,7 @@ string put_direction
 float64 pickup_distance_from_top
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerMoveResource.action

@@ -12,6 +12,7 @@ string get_direction
 string put_direction
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerMoveTo.action

@@ -2,6 +2,7 @@ Resource well
 float64 dis_to_top
 int32 channel
 ---
+string return_info
 bool success
 ---
 # 反馈

unilabos_msgs/action/LiquidHandlerOscillateBiomek.action

@@ -0,0 +1,7 @@
+int32 rpm
+int32 time
+
+---
+string return_info
+bool success
+---

unilabos_msgs/action/LiquidHandlerPickUpTips.action

@@ -5,6 +5,7 @@ int32[] use_channels
 geometry_msgs/Point[] offsets
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerPickUpTips96.action

@@ -4,6 +4,7 @@ Resource tip_rack
 geometry_msgs/Point offset
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerProtocolCreation.action

@@ -0,0 +1,10 @@
+string protocol_name
+string protocol_description
+string protocol_version
+string protocol_author
+string protocol_date
+string protocol_type
+string[] none_keys
+---
+string return_info
+---

unilabos_msgs/action/LiquidHandlerRemove.action

@@ -12,6 +12,7 @@ bool is_96_well
 float64[] top
 string[] none_keys
 ---
+string return_info
 bool success
 ---
 # 反馈

unilabos_msgs/action/LiquidHandlerReturnTips.action

@@ -4,6 +4,7 @@ int32[] use_channels
 bool allow_nonzero_volume
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerReturnTips96.action

@@ -3,6 +3,7 @@
 bool allow_nonzero_volume
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerStamp.action

@@ -7,6 +7,7 @@ float64 aspiration_flow_rate
 float64 dispense_flow_rate
 ---
 # 结果字段
+string return_info
 bool success
 ---
 # 反馈字段 

unilabos_msgs/action/LiquidHandlerTransfer.action

@@ -20,6 +20,7 @@ float64 mix_liquid_height
 int32[] delays
 string[] none_keys
 ---
+string return_info
 bool success
 ---
 # 反馈

unilabos_msgs/action/LiquidHandlerTransferBiomek.action

@@ -0,0 +1,11 @@
+string source
+string target
+string tip_rack
+float64 volume
+string aspirate_technique
+string dispense_technique
+
+---
+string return_info
+bool success
+---

unilabos_msgs/action/Point3DSeparateInput.action

@@ -2,5 +2,6 @@ float64 x
 float64 y
 float64 z
 ---
+string return_info
 bool success
 ---

unilabos_msgs/action/PumpTransfer.action

@@ -10,6 +10,7 @@ float64 rinsing_volume
 int32 rinsing_repeats
 bool solid
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/ResourceCreateFromOuter.action

@@ -4,5 +4,6 @@ string[] bind_parent_ids
 geometry_msgs/Point[] bind_locations
 string[] other_calling_params
 ---
+string return_info
 bool success
 ---

unilabos_msgs/action/ResourceCreateFromOuterEasy.action

@@ -8,5 +8,6 @@ string[] liquid_type
 float32[] liquid_volume
 int32 slot_on_deck
 ---
+string return_info
 bool success
 ---

unilabos_msgs/action/SendCmd.action

@@ -1,6 +1,7 @@
 # Simple
 string command
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/Separate.action

@@ -13,6 +13,7 @@ float64 stir_time # Optional. Time stir for after adding solvent, before separat
 float64 stir_speed # Optional. Speed to stir at after adding solvent, before separation of phases.
 float64 settling_time # Optional. Time
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/SolidDispenseAddPowderTube.action

@@ -2,6 +2,7 @@ int32 powder_tube_number
 string target_tube_position
 float64 compound_mass
 ---
+string return_info
 float64 actual_mass_mg
 bool success
 ---

unilabos_msgs/action/Stir.action

@@ -3,6 +3,7 @@ float64 stir_time
 float64 stir_speed
 float64 settling_time
 ---
+string return_info
 bool success
 ---
 string status

unilabos_msgs/action/StrSingleInput.action

@@ -1,4 +1,5 @@
 string string
 ---
+string return_info
 bool success
 ---

unilabos_msgs/action/WorkStationRun.action

@@ -3,6 +3,7 @@ string wf_name
 string params
 Resource resource
 ---
+string return_info
 bool success
 ---
 string status