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0f7366f3ee |
@@ -1,60 +0,0 @@
|
||||
# unilabos: Production package (depends on unilabos-env + pip unilabos)
|
||||
# For production deployment
|
||||
|
||||
package:
|
||||
name: unilabos
|
||||
version: 0.10.17
|
||||
|
||||
source:
|
||||
path: ../../unilabos
|
||||
target_directory: unilabos
|
||||
|
||||
build:
|
||||
python:
|
||||
entry_points:
|
||||
- unilab = unilabos.app.main:main
|
||||
script:
|
||||
- set PIP_NO_INDEX=
|
||||
- if: win
|
||||
then:
|
||||
- copy %RECIPE_DIR%\..\..\MANIFEST.in %SRC_DIR%
|
||||
- copy %RECIPE_DIR%\..\..\setup.cfg %SRC_DIR%
|
||||
- copy %RECIPE_DIR%\..\..\setup.py %SRC_DIR%
|
||||
- pip install %SRC_DIR%
|
||||
- if: unix
|
||||
then:
|
||||
- cp $RECIPE_DIR/../../MANIFEST.in $SRC_DIR
|
||||
- cp $RECIPE_DIR/../../setup.cfg $SRC_DIR
|
||||
- cp $RECIPE_DIR/../../setup.py $SRC_DIR
|
||||
- pip install $SRC_DIR
|
||||
|
||||
requirements:
|
||||
host:
|
||||
- python ==3.11.14
|
||||
- pip
|
||||
- setuptools
|
||||
- zstd
|
||||
- zstandard
|
||||
run:
|
||||
- zstd
|
||||
- zstandard
|
||||
- networkx
|
||||
- typing_extensions
|
||||
- websockets
|
||||
- pint
|
||||
- fastapi
|
||||
- jinja2
|
||||
- requests
|
||||
- uvicorn
|
||||
- opcua # [not osx]
|
||||
- pyserial
|
||||
- pandas
|
||||
- pymodbus
|
||||
- matplotlib
|
||||
- pylibftdi
|
||||
- uni-lab::unilabos-env ==0.10.17
|
||||
|
||||
about:
|
||||
repository: https://github.com/deepmodeling/Uni-Lab-OS
|
||||
license: GPL-3.0-only
|
||||
description: "UniLabOS - Production package with minimal ROS2 dependencies"
|
||||
@@ -1,39 +0,0 @@
|
||||
# unilabos-env: conda environment dependencies (ROS2 + conda packages)
|
||||
|
||||
package:
|
||||
name: unilabos-env
|
||||
version: 0.10.17
|
||||
|
||||
build:
|
||||
noarch: generic
|
||||
|
||||
requirements:
|
||||
run:
|
||||
# Python
|
||||
- zstd
|
||||
- zstandard
|
||||
- conda-forge::python ==3.11.14
|
||||
- conda-forge::opencv
|
||||
# ROS2 dependencies (from ci-check.yml)
|
||||
- robostack-staging::ros-humble-ros-core
|
||||
- robostack-staging::ros-humble-action-msgs
|
||||
- robostack-staging::ros-humble-std-msgs
|
||||
- robostack-staging::ros-humble-geometry-msgs
|
||||
- robostack-staging::ros-humble-control-msgs
|
||||
- robostack-staging::ros-humble-nav2-msgs
|
||||
- robostack-staging::ros-humble-cv-bridge
|
||||
- robostack-staging::ros-humble-vision-opencv
|
||||
- robostack-staging::ros-humble-tf-transformations
|
||||
- robostack-staging::ros-humble-moveit-msgs
|
||||
- robostack-staging::ros-humble-tf2-ros
|
||||
- robostack-staging::ros-humble-tf2-ros-py
|
||||
- conda-forge::transforms3d
|
||||
- conda-forge::uv
|
||||
|
||||
# UniLabOS custom messages
|
||||
- uni-lab::ros-humble-unilabos-msgs
|
||||
|
||||
about:
|
||||
repository: https://github.com/deepmodeling/Uni-Lab-OS
|
||||
license: GPL-3.0-only
|
||||
description: "UniLabOS Environment - ROS2 and conda dependencies"
|
||||
@@ -1,42 +0,0 @@
|
||||
# unilabos-full: Full package with all features
|
||||
# Depends on unilabos + complete ROS2 desktop + dev tools
|
||||
|
||||
package:
|
||||
name: unilabos-full
|
||||
version: 0.10.17
|
||||
|
||||
build:
|
||||
noarch: generic
|
||||
|
||||
requirements:
|
||||
run:
|
||||
# Base unilabos package (includes unilabos-env)
|
||||
- uni-lab::unilabos ==0.10.17
|
||||
# Documentation tools
|
||||
- sphinx
|
||||
- sphinx_rtd_theme
|
||||
# Web UI
|
||||
- gradio
|
||||
- flask
|
||||
# Interactive development
|
||||
- ipython
|
||||
- jupyter
|
||||
- jupyros
|
||||
- colcon-common-extensions
|
||||
# ROS2 full desktop (includes rviz2, gazebo, etc.)
|
||||
- robostack-staging::ros-humble-desktop-full
|
||||
# Navigation and motion control
|
||||
- ros-humble-navigation2
|
||||
- ros-humble-ros2-control
|
||||
- ros-humble-robot-state-publisher
|
||||
- ros-humble-joint-state-publisher
|
||||
# MoveIt motion planning
|
||||
- ros-humble-moveit
|
||||
- ros-humble-moveit-servo
|
||||
# Simulation
|
||||
- ros-humble-simulation
|
||||
|
||||
about:
|
||||
repository: https://github.com/deepmodeling/Uni-Lab-OS
|
||||
license: GPL-3.0-only
|
||||
description: "UniLabOS Full - Complete package with ROS2 Desktop, MoveIt, Navigation2, Gazebo, Jupyter"
|
||||
91
.conda/recipe.yaml
Normal file
91
.conda/recipe.yaml
Normal file
@@ -0,0 +1,91 @@
|
||||
package:
|
||||
name: unilabos
|
||||
version: 0.10.15
|
||||
|
||||
source:
|
||||
path: ../unilabos
|
||||
target_directory: unilabos
|
||||
|
||||
build:
|
||||
python:
|
||||
entry_points:
|
||||
- unilab = unilabos.app.main:main
|
||||
script:
|
||||
- set PIP_NO_INDEX=
|
||||
- if: win
|
||||
then:
|
||||
- copy %RECIPE_DIR%\..\MANIFEST.in %SRC_DIR%
|
||||
- copy %RECIPE_DIR%\..\setup.cfg %SRC_DIR%
|
||||
- copy %RECIPE_DIR%\..\setup.py %SRC_DIR%
|
||||
- call %PYTHON% -m pip install %SRC_DIR%
|
||||
- if: unix
|
||||
then:
|
||||
- cp $RECIPE_DIR/../MANIFEST.in $SRC_DIR
|
||||
- cp $RECIPE_DIR/../setup.cfg $SRC_DIR
|
||||
- cp $RECIPE_DIR/../setup.py $SRC_DIR
|
||||
- $PYTHON -m pip install $SRC_DIR
|
||||
|
||||
requirements:
|
||||
host:
|
||||
- python ==3.11.11
|
||||
- pip
|
||||
- setuptools
|
||||
- zstd
|
||||
- zstandard
|
||||
run:
|
||||
- conda-forge::python ==3.11.11
|
||||
- compilers
|
||||
- cmake
|
||||
- zstd
|
||||
- zstandard
|
||||
- ninja
|
||||
- if: unix
|
||||
then:
|
||||
- make
|
||||
- sphinx
|
||||
- sphinx_rtd_theme
|
||||
- numpy
|
||||
- scipy
|
||||
- pandas
|
||||
- networkx
|
||||
- matplotlib
|
||||
- pint
|
||||
- pyserial
|
||||
- pyusb
|
||||
- pylibftdi
|
||||
- pymodbus
|
||||
- python-can
|
||||
- pyvisa
|
||||
- opencv
|
||||
- pydantic
|
||||
- fastapi
|
||||
- uvicorn
|
||||
- gradio
|
||||
- flask
|
||||
- websockets
|
||||
- ipython
|
||||
- jupyter
|
||||
- jupyros
|
||||
- colcon-common-extensions
|
||||
- robostack-staging::ros-humble-desktop-full
|
||||
- robostack-staging::ros-humble-control-msgs
|
||||
- robostack-staging::ros-humble-sensor-msgs
|
||||
- robostack-staging::ros-humble-trajectory-msgs
|
||||
- ros-humble-navigation2
|
||||
- ros-humble-ros2-control
|
||||
- ros-humble-robot-state-publisher
|
||||
- ros-humble-joint-state-publisher
|
||||
- ros-humble-rosbridge-server
|
||||
- ros-humble-cv-bridge
|
||||
- ros-humble-tf2
|
||||
- ros-humble-moveit
|
||||
- ros-humble-moveit-servo
|
||||
- ros-humble-simulation
|
||||
- ros-humble-tf-transformations
|
||||
- transforms3d
|
||||
- uni-lab::ros-humble-unilabos-msgs
|
||||
|
||||
about:
|
||||
repository: https://github.com/deepmodeling/Uni-Lab-OS
|
||||
license: GPL-3.0-only
|
||||
description: "Uni-Lab-OS"
|
||||
67
.github/workflows/ci-check.yml
vendored
67
.github/workflows/ci-check.yml
vendored
@@ -1,67 +0,0 @@
|
||||
name: CI Check
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: [main, dev]
|
||||
pull_request:
|
||||
branches: [main, dev]
|
||||
|
||||
jobs:
|
||||
registry-check:
|
||||
runs-on: windows-latest
|
||||
|
||||
env:
|
||||
# Fix Unicode encoding issue on Windows runner (cp1252 -> utf-8)
|
||||
PYTHONIOENCODING: utf-8
|
||||
PYTHONUTF8: 1
|
||||
|
||||
defaults:
|
||||
run:
|
||||
shell: cmd
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Setup Miniforge
|
||||
uses: conda-incubator/setup-miniconda@v3
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
channels: robostack-staging,conda-forge,uni-lab
|
||||
channel-priority: flexible
|
||||
activate-environment: check-env
|
||||
auto-update-conda: false
|
||||
show-channel-urls: true
|
||||
|
||||
- name: Install ROS dependencies, uv and unilabos-msgs
|
||||
run: |
|
||||
echo Installing ROS dependencies...
|
||||
mamba install -n check-env conda-forge::uv conda-forge::opencv robostack-staging::ros-humble-ros-core robostack-staging::ros-humble-action-msgs robostack-staging::ros-humble-std-msgs robostack-staging::ros-humble-geometry-msgs robostack-staging::ros-humble-control-msgs robostack-staging::ros-humble-nav2-msgs uni-lab::ros-humble-unilabos-msgs robostack-staging::ros-humble-cv-bridge robostack-staging::ros-humble-vision-opencv robostack-staging::ros-humble-tf-transformations robostack-staging::ros-humble-moveit-msgs robostack-staging::ros-humble-tf2-ros robostack-staging::ros-humble-tf2-ros-py conda-forge::transforms3d -c robostack-staging -c conda-forge -c uni-lab -y
|
||||
|
||||
- name: Install pip dependencies and unilabos
|
||||
run: |
|
||||
call conda activate check-env
|
||||
echo Installing pip dependencies...
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
uv pip install pywinauto git+https://github.com/Xuwznln/pylabrobot.git
|
||||
uv pip uninstall enum34 || echo enum34 not installed, skipping
|
||||
uv pip install .
|
||||
|
||||
- name: Run check mode (complete_registry)
|
||||
run: |
|
||||
call conda activate check-env
|
||||
echo Running check mode...
|
||||
python -m unilabos --check_mode --skip_env_check
|
||||
|
||||
- name: Check for uncommitted changes
|
||||
shell: bash
|
||||
run: |
|
||||
if ! git diff --exit-code; then
|
||||
echo "::error::检测到文件变化!请先在本地运行 'python -m unilabos --complete_registry' 并提交变更"
|
||||
echo "变化的文件:"
|
||||
git diff --name-only
|
||||
exit 1
|
||||
fi
|
||||
echo "检查通过:无文件变化"
|
||||
43
.github/workflows/conda-pack-build.yml
vendored
43
.github/workflows/conda-pack-build.yml
vendored
@@ -13,11 +13,6 @@ on:
|
||||
required: false
|
||||
default: 'win-64'
|
||||
type: string
|
||||
build_full:
|
||||
description: '是否构建完整版 unilabos-full (默认构建轻量版 unilabos)'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
|
||||
jobs:
|
||||
build-conda-pack:
|
||||
@@ -62,7 +57,7 @@ jobs:
|
||||
echo "should_build=false" >> $GITHUB_OUTPUT
|
||||
fi
|
||||
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
with:
|
||||
ref: ${{ github.event.inputs.branch }}
|
||||
@@ -74,7 +69,7 @@ jobs:
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
python-version: '3.11.14'
|
||||
python-version: '3.11.11'
|
||||
channels: conda-forge,robostack-staging,uni-lab,defaults
|
||||
channel-priority: flexible
|
||||
activate-environment: unilab
|
||||
@@ -86,14 +81,7 @@ jobs:
|
||||
run: |
|
||||
echo Installing unilabos and dependencies to unilab environment...
|
||||
echo Using mamba for faster and more reliable dependency resolution...
|
||||
echo Build full: ${{ github.event.inputs.build_full }}
|
||||
if "${{ github.event.inputs.build_full }}"=="true" (
|
||||
echo Installing unilabos-full ^(complete package^)...
|
||||
mamba install -n unilab uni-lab::unilabos-full conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
) else (
|
||||
echo Installing unilabos ^(minimal package^)...
|
||||
mamba install -n unilab uni-lab::unilabos conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
)
|
||||
mamba install -n unilab uni-lab::unilabos conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
|
||||
- name: Install conda-pack, unilabos and dependencies (Unix)
|
||||
if: steps.should_build.outputs.should_build == 'true' && matrix.platform != 'win-64'
|
||||
@@ -101,14 +89,7 @@ jobs:
|
||||
run: |
|
||||
echo "Installing unilabos and dependencies to unilab environment..."
|
||||
echo "Using mamba for faster and more reliable dependency resolution..."
|
||||
echo "Build full: ${{ github.event.inputs.build_full }}"
|
||||
if [[ "${{ github.event.inputs.build_full }}" == "true" ]]; then
|
||||
echo "Installing unilabos-full (complete package)..."
|
||||
mamba install -n unilab uni-lab::unilabos-full conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
else
|
||||
echo "Installing unilabos (minimal package)..."
|
||||
mamba install -n unilab uni-lab::unilabos conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
fi
|
||||
mamba install -n unilab uni-lab::unilabos conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
|
||||
- name: Get latest ros-humble-unilabos-msgs version (Windows)
|
||||
if: steps.should_build.outputs.should_build == 'true' && matrix.platform == 'win-64'
|
||||
@@ -312,7 +293,7 @@ jobs:
|
||||
|
||||
- name: Upload distribution package
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
uses: actions/upload-artifact@v6
|
||||
uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: unilab-pack-${{ matrix.platform }}-${{ github.event.inputs.branch }}
|
||||
path: dist-package/
|
||||
@@ -327,12 +308,7 @@ jobs:
|
||||
echo ==========================================
|
||||
echo Platform: ${{ matrix.platform }}
|
||||
echo Branch: ${{ github.event.inputs.branch }}
|
||||
echo Python version: 3.11.14
|
||||
if "${{ github.event.inputs.build_full }}"=="true" (
|
||||
echo Package: unilabos-full ^(complete^)
|
||||
) else (
|
||||
echo Package: unilabos ^(minimal^)
|
||||
)
|
||||
echo Python version: 3.11.11
|
||||
echo.
|
||||
echo Distribution package contents:
|
||||
dir dist-package
|
||||
@@ -352,12 +328,7 @@ jobs:
|
||||
echo "=========================================="
|
||||
echo "Platform: ${{ matrix.platform }}"
|
||||
echo "Branch: ${{ github.event.inputs.branch }}"
|
||||
echo "Python version: 3.11.14"
|
||||
if [[ "${{ github.event.inputs.build_full }}" == "true" ]]; then
|
||||
echo "Package: unilabos-full (complete)"
|
||||
else
|
||||
echo "Package: unilabos (minimal)"
|
||||
fi
|
||||
echo "Python version: 3.11.11"
|
||||
echo ""
|
||||
echo "Distribution package contents:"
|
||||
ls -lh dist-package/
|
||||
|
||||
37
.github/workflows/deploy-docs.yml
vendored
37
.github/workflows/deploy-docs.yml
vendored
@@ -1,12 +1,10 @@
|
||||
name: Deploy Docs
|
||||
|
||||
on:
|
||||
# 在 CI Check 成功后自动触发(仅 main 分支)
|
||||
workflow_run:
|
||||
workflows: ["CI Check"]
|
||||
types: [completed]
|
||||
push:
|
||||
branches: [main]
|
||||
pull_request:
|
||||
branches: [main]
|
||||
# 手动触发
|
||||
workflow_dispatch:
|
||||
inputs:
|
||||
branch:
|
||||
@@ -35,19 +33,12 @@ concurrency:
|
||||
jobs:
|
||||
# Build documentation
|
||||
build:
|
||||
# 只在以下情况运行:
|
||||
# 1. workflow_run 触发且 CI Check 成功
|
||||
# 2. 手动触发
|
||||
if: |
|
||||
github.event_name == 'workflow_dispatch' ||
|
||||
(github.event_name == 'workflow_run' && github.event.workflow_run.conclusion == 'success')
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: Checkout code
|
||||
uses: actions/checkout@v6
|
||||
uses: actions/checkout@v4
|
||||
with:
|
||||
# workflow_run 时使用触发工作流的分支,手动触发时使用输入的分支
|
||||
ref: ${{ github.event.workflow_run.head_branch || github.event.inputs.branch || github.ref }}
|
||||
ref: ${{ github.event.inputs.branch || github.ref }}
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Setup Miniforge (with mamba)
|
||||
@@ -55,7 +46,7 @@ jobs:
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
python-version: '3.11.14'
|
||||
python-version: '3.11.11'
|
||||
channels: conda-forge,robostack-staging,uni-lab,defaults
|
||||
channel-priority: flexible
|
||||
activate-environment: unilab
|
||||
@@ -84,10 +75,8 @@ jobs:
|
||||
|
||||
- name: Setup Pages
|
||||
id: pages
|
||||
uses: actions/configure-pages@v5
|
||||
if: |
|
||||
github.event.workflow_run.head_branch == 'main' ||
|
||||
(github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
uses: actions/configure-pages@v4
|
||||
if: github.ref == 'refs/heads/main' || (github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
|
||||
- name: Build Sphinx documentation
|
||||
run: |
|
||||
@@ -105,18 +94,14 @@ jobs:
|
||||
test -f docs/_build/html/index.html && echo "✓ index.html exists" || echo "✗ index.html missing"
|
||||
|
||||
- name: Upload build artifacts
|
||||
uses: actions/upload-pages-artifact@v4
|
||||
if: |
|
||||
github.event.workflow_run.head_branch == 'main' ||
|
||||
(github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
uses: actions/upload-pages-artifact@v3
|
||||
if: github.ref == 'refs/heads/main' || (github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
with:
|
||||
path: docs/_build/html
|
||||
|
||||
# Deploy to GitHub Pages
|
||||
deploy:
|
||||
if: |
|
||||
github.event.workflow_run.head_branch == 'main' ||
|
||||
(github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
if: github.ref == 'refs/heads/main' || (github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
environment:
|
||||
name: github-pages
|
||||
url: ${{ steps.deployment.outputs.page_url }}
|
||||
|
||||
46
.github/workflows/multi-platform-build.yml
vendored
46
.github/workflows/multi-platform-build.yml
vendored
@@ -1,16 +1,11 @@
|
||||
name: Multi-Platform Conda Build
|
||||
|
||||
on:
|
||||
# 在 CI Check 工作流完成后触发(仅限 main/dev 分支)
|
||||
workflow_run:
|
||||
workflows: ["CI Check"]
|
||||
types:
|
||||
- completed
|
||||
branches: [main, dev]
|
||||
# 支持 tag 推送(不依赖 CI Check)
|
||||
push:
|
||||
branches: [main, dev]
|
||||
tags: ['v*']
|
||||
# 手动触发
|
||||
pull_request:
|
||||
branches: [main, dev]
|
||||
workflow_dispatch:
|
||||
inputs:
|
||||
platforms:
|
||||
@@ -22,37 +17,9 @@ on:
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
skip_ci_check:
|
||||
description: '跳过等待 CI Check (手动触发时可选)'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
|
||||
jobs:
|
||||
# 等待 CI Check 完成的 job (仅用于 workflow_run 触发)
|
||||
wait-for-ci:
|
||||
runs-on: ubuntu-latest
|
||||
if: github.event_name == 'workflow_run'
|
||||
outputs:
|
||||
should_continue: ${{ steps.check.outputs.should_continue }}
|
||||
steps:
|
||||
- name: Check CI status
|
||||
id: check
|
||||
run: |
|
||||
if [[ "${{ github.event.workflow_run.conclusion }}" == "success" ]]; then
|
||||
echo "should_continue=true" >> $GITHUB_OUTPUT
|
||||
echo "CI Check passed, proceeding with build"
|
||||
else
|
||||
echo "should_continue=false" >> $GITHUB_OUTPUT
|
||||
echo "CI Check did not succeed (status: ${{ github.event.workflow_run.conclusion }}), skipping build"
|
||||
fi
|
||||
|
||||
build:
|
||||
needs: [wait-for-ci]
|
||||
# 运行条件:workflow_run 触发且 CI 成功,或者其他触发方式
|
||||
if: |
|
||||
always() &&
|
||||
(needs.wait-for-ci.result == 'skipped' || needs.wait-for-ci.outputs.should_continue == 'true')
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
@@ -77,10 +44,8 @@ jobs:
|
||||
shell: bash -l {0}
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
with:
|
||||
# 如果是 workflow_run 触发,使用触发 CI Check 的 commit
|
||||
ref: ${{ github.event.workflow_run.head_sha || github.ref }}
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Check if platform should be built
|
||||
@@ -104,6 +69,7 @@ jobs:
|
||||
channels: conda-forge,robostack-staging,defaults
|
||||
channel-priority: strict
|
||||
activate-environment: build-env
|
||||
auto-activate-base: false
|
||||
auto-update-conda: false
|
||||
show-channel-urls: true
|
||||
|
||||
@@ -149,7 +115,7 @@ jobs:
|
||||
|
||||
- name: Upload conda package artifacts
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
uses: actions/upload-artifact@v6
|
||||
uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: conda-package-${{ matrix.platform }}
|
||||
path: conda-packages-temp
|
||||
|
||||
113
.github/workflows/unilabos-conda-build.yml
vendored
113
.github/workflows/unilabos-conda-build.yml
vendored
@@ -1,62 +1,25 @@
|
||||
name: UniLabOS Conda Build
|
||||
|
||||
on:
|
||||
# 在 CI Check 成功后自动触发
|
||||
workflow_run:
|
||||
workflows: ["CI Check"]
|
||||
types: [completed]
|
||||
branches: [main, dev]
|
||||
# 标签推送时直接触发(发布版本)
|
||||
push:
|
||||
branches: [main, dev]
|
||||
tags: ['v*']
|
||||
# 手动触发
|
||||
pull_request:
|
||||
branches: [main, dev]
|
||||
workflow_dispatch:
|
||||
inputs:
|
||||
platforms:
|
||||
description: '选择构建平台 (逗号分隔): linux-64, osx-64, osx-arm64, win-64'
|
||||
required: false
|
||||
default: 'linux-64'
|
||||
build_full:
|
||||
description: '是否构建 unilabos-full 完整包 (默认只构建 unilabos 基础包)'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
upload_to_anaconda:
|
||||
description: '是否上传到Anaconda.org'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
skip_ci_check:
|
||||
description: '跳过等待 CI Check (手动触发时可选)'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
|
||||
jobs:
|
||||
# 等待 CI Check 完成的 job (仅用于 workflow_run 触发)
|
||||
wait-for-ci:
|
||||
runs-on: ubuntu-latest
|
||||
if: github.event_name == 'workflow_run'
|
||||
outputs:
|
||||
should_continue: ${{ steps.check.outputs.should_continue }}
|
||||
steps:
|
||||
- name: Check CI status
|
||||
id: check
|
||||
run: |
|
||||
if [[ "${{ github.event.workflow_run.conclusion }}" == "success" ]]; then
|
||||
echo "should_continue=true" >> $GITHUB_OUTPUT
|
||||
echo "CI Check passed, proceeding with build"
|
||||
else
|
||||
echo "should_continue=false" >> $GITHUB_OUTPUT
|
||||
echo "CI Check did not succeed (status: ${{ github.event.workflow_run.conclusion }}), skipping build"
|
||||
fi
|
||||
|
||||
build:
|
||||
needs: [wait-for-ci]
|
||||
# 运行条件:workflow_run 触发且 CI 成功,或者其他触发方式
|
||||
if: |
|
||||
always() &&
|
||||
(needs.wait-for-ci.result == 'skipped' || needs.wait-for-ci.outputs.should_continue == 'true')
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
@@ -77,10 +40,8 @@ jobs:
|
||||
shell: bash -l {0}
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
- uses: actions/checkout@v4
|
||||
with:
|
||||
# 如果是 workflow_run 触发,使用触发 CI Check 的 commit
|
||||
ref: ${{ github.event.workflow_run.head_sha || github.ref }}
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Check if platform should be built
|
||||
@@ -104,6 +65,7 @@ jobs:
|
||||
channels: conda-forge,robostack-staging,uni-lab,defaults
|
||||
channel-priority: strict
|
||||
activate-environment: build-env
|
||||
auto-activate-base: false
|
||||
auto-update-conda: false
|
||||
show-channel-urls: true
|
||||
|
||||
@@ -119,61 +81,12 @@ jobs:
|
||||
conda list | grep -E "(rattler-build|anaconda-client)"
|
||||
echo "Platform: ${{ matrix.platform }}"
|
||||
echo "OS: ${{ matrix.os }}"
|
||||
echo "Build full package: ${{ github.event.inputs.build_full || 'false' }}"
|
||||
echo "Building packages:"
|
||||
echo " - unilabos-env (environment dependencies)"
|
||||
echo " - unilabos (with pip package)"
|
||||
if [[ "${{ github.event.inputs.build_full }}" == "true" ]]; then
|
||||
echo " - unilabos-full (complete package)"
|
||||
fi
|
||||
echo "Building UniLabOS package"
|
||||
|
||||
- name: Build unilabos-env (conda environment only, noarch)
|
||||
- name: Build conda package
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
run: |
|
||||
echo "Building unilabos-env (conda environment dependencies)..."
|
||||
rattler-build build -r .conda/environment/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge
|
||||
|
||||
- name: Upload unilabos-env to Anaconda.org (if enabled)
|
||||
if: steps.should_build.outputs.should_build == 'true' && github.event.inputs.upload_to_anaconda == 'true'
|
||||
run: |
|
||||
echo "Uploading unilabos-env to uni-lab organization..."
|
||||
for package in $(find ./output -name "unilabos-env*.conda"); do
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
- name: Build unilabos (with pip package)
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
run: |
|
||||
echo "Building unilabos package..."
|
||||
# 如果已上传到 Anaconda,从 uni-lab channel 获取 unilabos-env;否则从本地 output 获取
|
||||
rattler-build build -r .conda/base/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
|
||||
|
||||
- name: Upload unilabos to Anaconda.org (if enabled)
|
||||
if: steps.should_build.outputs.should_build == 'true' && github.event.inputs.upload_to_anaconda == 'true'
|
||||
run: |
|
||||
echo "Uploading unilabos to uni-lab organization..."
|
||||
for package in $(find ./output -name "unilabos-0*.conda" -o -name "unilabos-[0-9]*.conda"); do
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
- name: Build unilabos-full - Only when explicitly requested
|
||||
if: |
|
||||
steps.should_build.outputs.should_build == 'true' &&
|
||||
github.event.inputs.build_full == 'true'
|
||||
run: |
|
||||
echo "Building unilabos-full package on ${{ matrix.platform }}..."
|
||||
rattler-build build -r .conda/full/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
|
||||
|
||||
- name: Upload unilabos-full to Anaconda.org (if enabled)
|
||||
if: |
|
||||
steps.should_build.outputs.should_build == 'true' &&
|
||||
github.event.inputs.build_full == 'true' &&
|
||||
github.event.inputs.upload_to_anaconda == 'true'
|
||||
run: |
|
||||
echo "Uploading unilabos-full to uni-lab organization..."
|
||||
for package in $(find ./output -name "unilabos-full*.conda"); do
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
rattler-build build -r .conda/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge
|
||||
|
||||
- name: List built packages
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
@@ -195,9 +108,17 @@ jobs:
|
||||
|
||||
- name: Upload conda package artifacts
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
uses: actions/upload-artifact@v6
|
||||
uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: conda-package-unilabos-${{ matrix.platform }}
|
||||
path: conda-packages-temp
|
||||
if-no-files-found: warn
|
||||
retention-days: 30
|
||||
|
||||
- name: Upload to Anaconda.org (uni-lab organization)
|
||||
if: github.event.inputs.upload_to_anaconda == 'true'
|
||||
run: |
|
||||
for package in $(find ./output -name "*.conda"); do
|
||||
echo "Uploading $package to uni-lab organization..."
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
@@ -1,5 +1,4 @@
|
||||
recursive-include unilabos/test *
|
||||
recursive-include unilabos/utils *
|
||||
recursive-include unilabos/registry *.yaml
|
||||
recursive-include unilabos/app/web/static *
|
||||
recursive-include unilabos/app/web/templates *
|
||||
|
||||
38
README.md
38
README.md
@@ -31,46 +31,26 @@ Detailed documentation can be found at:
|
||||
|
||||
## Quick Start
|
||||
|
||||
### 1. Setup Conda Environment
|
||||
1. Setup Conda Environment
|
||||
|
||||
Uni-Lab-OS recommends using `mamba` for environment management. Choose the package that fits your needs:
|
||||
|
||||
| Package | Use Case | Contents |
|
||||
|---------|----------|----------|
|
||||
| `unilabos` | **Recommended for most users** | Complete package, ready to use |
|
||||
| `unilabos-env` | Developers (editable install) | Environment only, install unilabos via pip |
|
||||
| `unilabos-full` | Simulation/Visualization | unilabos + ROS2 Desktop + Gazebo + MoveIt |
|
||||
Uni-Lab-OS recommends using `mamba` for environment management:
|
||||
|
||||
```bash
|
||||
# Create new environment
|
||||
mamba create -n unilab python=3.11.14
|
||||
mamba create -n unilab python=3.11.11
|
||||
mamba activate unilab
|
||||
|
||||
# Option A: Standard installation (recommended for most users)
|
||||
mamba install uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# Option B: For developers (editable mode development)
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
# Then install unilabos and dependencies:
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git && cd Uni-Lab-OS
|
||||
pip install -e .
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
|
||||
# Option C: Full installation (simulation/visualization)
|
||||
mamba install uni-lab::unilabos-full -c robostack-staging -c conda-forge
|
||||
mamba install -n unilab uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
**When to use which?**
|
||||
- **unilabos**: Standard installation for production deployment and general usage (recommended)
|
||||
- **unilabos-env**: For developers who need `pip install -e .` editable mode, modify source code
|
||||
- **unilabos-full**: For simulation (Gazebo), visualization (rviz2), and Jupyter notebooks
|
||||
|
||||
### 2. Clone Repository (Optional, for developers)
|
||||
2. Install Dev Uni-Lab-OS
|
||||
|
||||
```bash
|
||||
# Clone the repository (only needed for development or examples)
|
||||
# Clone the repository
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git
|
||||
cd Uni-Lab-OS
|
||||
|
||||
# Install Uni-Lab-OS
|
||||
pip install .
|
||||
```
|
||||
|
||||
3. Start Uni-Lab System
|
||||
|
||||
38
README_zh.md
38
README_zh.md
@@ -31,46 +31,26 @@ Uni-Lab-OS 是一个用于实验室自动化的综合平台,旨在连接和控
|
||||
|
||||
## 快速开始
|
||||
|
||||
### 1. 配置 Conda 环境
|
||||
1. 配置 Conda 环境
|
||||
|
||||
Uni-Lab-OS 建议使用 `mamba` 管理环境。根据您的需求选择合适的安装包:
|
||||
|
||||
| 安装包 | 适用场景 | 包含内容 |
|
||||
|--------|----------|----------|
|
||||
| `unilabos` | **推荐大多数用户** | 完整安装包,开箱即用 |
|
||||
| `unilabos-env` | 开发者(可编辑安装) | 仅环境依赖,通过 pip 安装 unilabos |
|
||||
| `unilabos-full` | 仿真/可视化 | unilabos + ROS2 桌面版 + Gazebo + MoveIt |
|
||||
Uni-Lab-OS 建议使用 `mamba` 管理环境。根据您的操作系统选择适当的环境文件:
|
||||
|
||||
```bash
|
||||
# 创建新环境
|
||||
mamba create -n unilab python=3.11.14
|
||||
mamba create -n unilab python=3.11.11
|
||||
mamba activate unilab
|
||||
|
||||
# 方案 A:标准安装(推荐大多数用户)
|
||||
mamba install uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# 方案 B:开发者环境(可编辑模式开发)
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
# 然后安装 unilabos 和依赖:
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git && cd Uni-Lab-OS
|
||||
pip install -e .
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
|
||||
# 方案 C:完整安装(仿真/可视化)
|
||||
mamba install uni-lab::unilabos-full -c robostack-staging -c conda-forge
|
||||
mamba install -n unilab uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
**如何选择?**
|
||||
- **unilabos**:标准安装,适用于生产部署和日常使用(推荐)
|
||||
- **unilabos-env**:开发者使用,支持 `pip install -e .` 可编辑模式,可修改源代码
|
||||
- **unilabos-full**:需要仿真(Gazebo)、可视化(rviz2)或 Jupyter Notebook
|
||||
|
||||
### 2. 克隆仓库(可选,供开发者使用)
|
||||
2. 安装开发版 Uni-Lab-OS:
|
||||
|
||||
```bash
|
||||
# 克隆仓库(仅开发或查看示例时需要)
|
||||
# 克隆仓库
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git
|
||||
cd Uni-Lab-OS
|
||||
|
||||
# 安装 Uni-Lab-OS
|
||||
pip install .
|
||||
```
|
||||
|
||||
3. 启动 Uni-Lab 系统
|
||||
|
||||
@@ -31,14 +31,6 @@
|
||||
|
||||
详细的安装步骤请参考 [安装指南](installation.md)。
|
||||
|
||||
**选择合适的安装包:**
|
||||
|
||||
| 安装包 | 适用场景 | 包含组件 |
|
||||
|--------|----------|----------|
|
||||
| `unilabos` | **推荐大多数用户**,生产部署 | 完整安装包,开箱即用 |
|
||||
| `unilabos-env` | 开发者(可编辑安装) | 仅环境依赖,通过 pip 安装 unilabos |
|
||||
| `unilabos-full` | 仿真/可视化 | unilabos + 完整 ROS2 桌面版 + Gazebo + MoveIt |
|
||||
|
||||
**关键步骤:**
|
||||
|
||||
```bash
|
||||
@@ -46,30 +38,15 @@
|
||||
# 下载 Miniforge: https://github.com/conda-forge/miniforge/releases
|
||||
|
||||
# 2. 创建 Conda 环境
|
||||
mamba create -n unilab python=3.11.14
|
||||
mamba create -n unilab python=3.11.11
|
||||
|
||||
# 3. 激活环境
|
||||
mamba activate unilab
|
||||
|
||||
# 4. 安装 Uni-Lab-OS(选择其一)
|
||||
|
||||
# 方案 A:标准安装(推荐大多数用户)
|
||||
# 4. 安装 Uni-Lab-OS
|
||||
mamba install uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# 方案 B:开发者环境(可编辑模式开发)
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
pip install -e /path/to/Uni-Lab-OS # 可编辑安装
|
||||
uv pip install -r unilabos/utils/requirements.txt # 安装 pip 依赖
|
||||
|
||||
# 方案 C:完整版(仿真/可视化)
|
||||
mamba install uni-lab::unilabos-full -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
**选择建议:**
|
||||
- **日常使用/生产部署**:使用 `unilabos`(推荐),完整功能,开箱即用
|
||||
- **开发者**:使用 `unilabos-env` + `pip install -e .` + `uv pip install -r unilabos/utils/requirements.txt`,代码修改立即生效
|
||||
- **仿真/可视化**:使用 `unilabos-full`,含 Gazebo、rviz2、MoveIt
|
||||
|
||||
#### 1.2 验证安装
|
||||
|
||||
```bash
|
||||
@@ -439,9 +416,6 @@ unilab --ak your_ak --sk your_sk -g test/experiments/mock_devices/mock_all.json
|
||||
1. 访问 Web 界面,进入"仪器耗材"模块
|
||||
2. 在"仪器设备"区域找到并添加上述设备
|
||||
3. 在"物料耗材"区域找到并添加容器
|
||||
4. 在workstation中配置protocol_type包含PumpTransferProtocol
|
||||
|
||||

|
||||
|
||||

|
||||
|
||||
@@ -452,9 +426,8 @@ unilab --ak your_ak --sk your_sk -g test/experiments/mock_devices/mock_all.json
|
||||
**操作步骤:**
|
||||
|
||||
1. 将两个 `container` 拖拽到 `workstation` 中
|
||||
2. 将 `virtual_multiway_valve` 拖拽到 `workstation` 中
|
||||
3. 将 `virtual_transfer_pump` 拖拽到 `workstation` 中
|
||||
4. 在画布上连接它们(建立父子关系)
|
||||
2. 将 `virtual_transfer_pump` 拖拽到 `workstation` 中
|
||||
3. 在画布上连接它们(建立父子关系)
|
||||
|
||||

|
||||
|
||||
@@ -795,43 +768,7 @@ Waiting for host service...
|
||||
|
||||
详细的设备驱动编写指南请参考 [添加设备驱动](../developer_guide/add_device.md)。
|
||||
|
||||
#### 9.1 开发环境准备
|
||||
|
||||
**推荐使用 `unilabos-env` + `pip install -e .` + `uv pip install`** 进行设备开发:
|
||||
|
||||
```bash
|
||||
# 1. 创建环境并安装 unilabos-env(ROS2 + conda 依赖 + uv)
|
||||
mamba create -n unilab python=3.11.14
|
||||
conda activate unilab
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
|
||||
# 2. 克隆代码
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git
|
||||
cd Uni-Lab-OS
|
||||
|
||||
# 3. 以可编辑模式安装(推荐使用脚本,自动检测中文环境)
|
||||
python scripts/dev_install.py
|
||||
|
||||
# 或手动安装:
|
||||
pip install -e .
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
```
|
||||
|
||||
**为什么使用这种方式?**
|
||||
- `unilabos-env` 提供 ROS2 核心组件和 uv(通过 conda 安装,避免编译)
|
||||
- `unilabos/utils/requirements.txt` 包含所有运行时需要的 pip 依赖
|
||||
- `dev_install.py` 自动检测中文环境,中文系统自动使用清华镜像
|
||||
- 使用 `uv` 替代 `pip`,安装速度更快
|
||||
- 可编辑模式:代码修改**立即生效**,无需重新安装
|
||||
|
||||
**如果安装失败或速度太慢**,可以手动执行(使用清华镜像):
|
||||
|
||||
```bash
|
||||
pip install -e . -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
uv pip install -r unilabos/utils/requirements.txt -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
```
|
||||
|
||||
#### 9.2 为什么需要自定义设备?
|
||||
#### 9.1 为什么需要自定义设备?
|
||||
|
||||
Uni-Lab-OS 内置了常见设备,但您的实验室可能有特殊设备需要集成:
|
||||
|
||||
@@ -840,7 +777,7 @@ Uni-Lab-OS 内置了常见设备,但您的实验室可能有特殊设备需要
|
||||
- 特殊的实验流程
|
||||
- 第三方设备集成
|
||||
|
||||
#### 9.3 创建 Python 包
|
||||
#### 9.2 创建 Python 包
|
||||
|
||||
为了方便开发和管理,建议为您的实验室创建独立的 Python 包。
|
||||
|
||||
@@ -877,7 +814,7 @@ touch my_lab_devices/my_lab_devices/__init__.py
|
||||
touch my_lab_devices/my_lab_devices/devices/__init__.py
|
||||
```
|
||||
|
||||
#### 9.4 创建 setup.py
|
||||
#### 9.3 创建 setup.py
|
||||
|
||||
```python
|
||||
# my_lab_devices/setup.py
|
||||
@@ -908,7 +845,7 @@ setup(
|
||||
)
|
||||
```
|
||||
|
||||
#### 9.5 开发安装
|
||||
#### 9.4 开发安装
|
||||
|
||||
使用 `-e` 参数进行可编辑安装,这样代码修改后立即生效:
|
||||
|
||||
@@ -923,7 +860,7 @@ pip install -e . -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
- 方便调试和测试
|
||||
- 支持版本控制(git)
|
||||
|
||||
#### 9.6 编写设备驱动
|
||||
#### 9.5 编写设备驱动
|
||||
|
||||
创建设备驱动文件:
|
||||
|
||||
@@ -1064,7 +1001,7 @@ class MyPump:
|
||||
- **返回 Dict**:所有动作方法返回字典类型
|
||||
- **文档字符串**:详细说明参数和功能
|
||||
|
||||
#### 9.7 测试设备驱动
|
||||
#### 9.6 测试设备驱动
|
||||
|
||||
创建简单的测试脚本:
|
||||
|
||||
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 81 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 415 KiB After Width: | Height: | Size: 275 KiB |
@@ -13,26 +13,15 @@
|
||||
- 开发者需要 Git 和基本的 Python 开发知识
|
||||
- 自定义 msgs 需要 GitHub 账号
|
||||
|
||||
## 安装包选择
|
||||
|
||||
Uni-Lab-OS 提供三个安装包版本,根据您的需求选择:
|
||||
|
||||
| 安装包 | 适用场景 | 包含组件 | 磁盘占用 |
|
||||
|--------|----------|----------|----------|
|
||||
| **unilabos** | **推荐大多数用户**,生产部署 | 完整安装包,开箱即用 | ~2-3 GB |
|
||||
| **unilabos-env** | 开发者环境(可编辑安装) | 仅环境依赖,通过 pip 安装 unilabos | ~2 GB |
|
||||
| **unilabos-full** | 仿真可视化、完整功能体验 | unilabos + 完整 ROS2 桌面版 + Gazebo + MoveIt | ~8-10 GB |
|
||||
|
||||
## 安装方式选择
|
||||
|
||||
根据您的使用场景,选择合适的安装方式:
|
||||
|
||||
| 安装方式 | 适用人群 | 推荐安装包 | 特点 | 安装时间 |
|
||||
| ---------------------- | -------------------- | ----------------- | ------------------------------ | ---------------------------- |
|
||||
| **方式一:一键安装** | 快速体验、演示 | 预打包环境 | 离线可用,无需配置 | 5-10 分钟 (网络良好的情况下) |
|
||||
| **方式二:手动安装** | **大多数用户** | `unilabos` | 完整功能,开箱即用 | 10-20 分钟 |
|
||||
| **方式三:开发者安装** | 开发者、需要修改源码 | `unilabos-env` | 可编辑模式,支持自定义开发 | 20-30 分钟 |
|
||||
| **仿真/可视化** | 仿真测试、可视化调试 | `unilabos-full` | 含 Gazebo、rviz2、MoveIt | 30-60 分钟 |
|
||||
| 安装方式 | 适用人群 | 特点 | 安装时间 |
|
||||
| ---------------------- | -------------------- | ------------------------------ | ---------------------------- |
|
||||
| **方式一:一键安装** | 实验室用户、快速体验 | 预打包环境,离线可用,无需配置 | 5-10 分钟 (网络良好的情况下) |
|
||||
| **方式二:手动安装** | 标准用户、生产环境 | 灵活配置,版本可控 | 10-20 分钟 |
|
||||
| **方式三:开发者安装** | 开发者、需要修改源码 | 可编辑模式,支持自定义 msgs | 20-30 分钟 |
|
||||
|
||||
---
|
||||
|
||||
@@ -155,38 +144,17 @@ bash Miniforge3-$(uname)-$(uname -m).sh
|
||||
使用以下命令创建 Uni-Lab 专用环境:
|
||||
|
||||
```bash
|
||||
mamba create -n unilab python=3.11.14 # 目前ros2组件依赖版本大多为3.11.14
|
||||
mamba create -n unilab python=3.11.11 # 目前ros2组件依赖版本大多为3.11.11
|
||||
mamba activate unilab
|
||||
|
||||
# 选择安装包(三选一):
|
||||
|
||||
# 方案 A:标准安装(推荐大多数用户)
|
||||
mamba install uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# 方案 B:开发者环境(可编辑模式开发)
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
# 然后安装 unilabos 和 pip 依赖:
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git && cd Uni-Lab-OS
|
||||
pip install -e .
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
|
||||
# 方案 C:完整版(含仿真和可视化工具)
|
||||
mamba install uni-lab::unilabos-full -c robostack-staging -c conda-forge
|
||||
mamba install -n unilab uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
**参数说明**:
|
||||
|
||||
- `-n unilab`: 创建名为 "unilab" 的环境
|
||||
- `uni-lab::unilabos`: 安装 unilabos 完整包,开箱即用(推荐)
|
||||
- `uni-lab::unilabos-env`: 仅安装环境依赖,适合开发者使用 `pip install -e .`
|
||||
- `uni-lab::unilabos-full`: 安装完整包(含 ROS2 Desktop、Gazebo、MoveIt 等)
|
||||
- `uni-lab::unilabos`: 从 uni-lab channel 安装 unilabos 包
|
||||
- `-c robostack-staging -c conda-forge`: 添加额外的软件源
|
||||
|
||||
**包选择建议**:
|
||||
- **日常使用/生产部署**:安装 `unilabos`(推荐,完整功能,开箱即用)
|
||||
- **开发者**:安装 `unilabos-env`,然后使用 `uv pip install -r unilabos/utils/requirements.txt` 安装依赖,再 `pip install -e .` 进行可编辑安装
|
||||
- **仿真/可视化**:安装 `unilabos-full`(Gazebo、rviz2、MoveIt)
|
||||
|
||||
**如果遇到网络问题**,可以使用清华镜像源加速下载:
|
||||
|
||||
```bash
|
||||
@@ -195,14 +163,8 @@ mamba config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/m
|
||||
mamba config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
|
||||
mamba config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
|
||||
|
||||
# 然后重新执行安装命令(推荐标准安装)
|
||||
# 然后重新执行安装命令
|
||||
mamba create -n unilab uni-lab::unilabos -c robostack-staging
|
||||
|
||||
# 或完整版(仿真/可视化)
|
||||
mamba create -n unilab uni-lab::unilabos-full -c robostack-staging
|
||||
|
||||
# pip 安装时使用清华镜像(开发者安装时使用)
|
||||
uv pip install -r unilabos/utils/requirements.txt -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
```
|
||||
|
||||
### 第三步:激活环境
|
||||
@@ -241,87 +203,58 @@ cd Uni-Lab-OS
|
||||
cd Uni-Lab-OS
|
||||
```
|
||||
|
||||
### 第二步:安装开发环境(unilabos-env)
|
||||
### 第二步:安装基础环境
|
||||
|
||||
**重要**:开发者请使用 `unilabos-env` 包,它专为开发者设计:
|
||||
- 包含 ROS2 核心组件和消息包(ros-humble-ros-core、std-msgs、geometry-msgs 等)
|
||||
- 包含 transforms3d、cv-bridge、tf2 等 conda 依赖
|
||||
- 包含 `uv` 工具,用于快速安装 pip 依赖
|
||||
- **不包含** pip 依赖和 unilabos 包(由 `pip install -e .` 和 `uv pip install` 安装)
|
||||
**推荐方式**:先通过**方式一(一键安装)**或**方式二(手动安装)**完成基础环境的安装,这将包含所有必需的依赖项(ROS2、msgs 等)。
|
||||
|
||||
#### 选项 A:通过一键安装(推荐)
|
||||
|
||||
参考上文"方式一:一键安装",完成基础环境的安装后,激活环境:
|
||||
|
||||
```bash
|
||||
# 创建并激活环境
|
||||
mamba create -n unilab python=3.11.14
|
||||
conda activate unilab
|
||||
|
||||
# 安装开发者环境包(ROS2 + conda 依赖 + uv)
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
### 第三步:安装 pip 依赖和可编辑模式安装
|
||||
#### 选项 B:通过手动安装
|
||||
|
||||
克隆代码并安装依赖:
|
||||
参考上文"方式二:手动安装",创建并安装环境:
|
||||
|
||||
```bash
|
||||
mamba create -n unilab python=3.11.11
|
||||
conda activate unilab
|
||||
mamba install -n unilab uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
**说明**:这会安装包括 Python 3.11.11、ROS2 Humble、ros-humble-unilabos-msgs 和所有必需依赖
|
||||
|
||||
### 第三步:切换到开发版本
|
||||
|
||||
现在你已经有了一个完整可用的 Uni-Lab 环境,接下来将 unilabos 包切换为开发版本:
|
||||
|
||||
```bash
|
||||
# 确保环境已激活
|
||||
conda activate unilab
|
||||
|
||||
# 克隆仓库(如果还未克隆)
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git
|
||||
cd Uni-Lab-OS
|
||||
# 卸载 pip 安装的 unilabos(保留所有 conda 依赖)
|
||||
pip uninstall unilabos -y
|
||||
|
||||
# 切换到 dev 分支(可选)
|
||||
# 克隆 dev 分支(如果还未克隆)
|
||||
cd /path/to/your/workspace
|
||||
git clone -b dev https://github.com/deepmodeling/Uni-Lab-OS.git
|
||||
# 或者如果已经克隆,切换到 dev 分支
|
||||
cd Uni-Lab-OS
|
||||
git checkout dev
|
||||
git pull
|
||||
```
|
||||
|
||||
**推荐:使用安装脚本**(自动检测中文环境,使用 uv 加速):
|
||||
|
||||
```bash
|
||||
# 自动检测中文环境,如果是中文系统则使用清华镜像
|
||||
python scripts/dev_install.py
|
||||
|
||||
# 或者手动指定:
|
||||
python scripts/dev_install.py --china # 强制使用清华镜像
|
||||
python scripts/dev_install.py --no-mirror # 强制使用 PyPI
|
||||
python scripts/dev_install.py --skip-deps # 跳过 pip 依赖安装
|
||||
python scripts/dev_install.py --use-pip # 使用 pip 而非 uv
|
||||
```
|
||||
|
||||
**手动安装**(如果脚本安装失败或速度太慢):
|
||||
|
||||
```bash
|
||||
# 1. 安装 unilabos(可编辑模式)
|
||||
pip install -e .
|
||||
|
||||
# 2. 使用 uv 安装 pip 依赖(推荐,速度更快)
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
|
||||
# 国内用户使用清华镜像:
|
||||
# 以可编辑模式安装开发版 unilabos
|
||||
pip install -e . -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
uv pip install -r unilabos/utils/requirements.txt -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
```
|
||||
|
||||
**注意**:
|
||||
- `uv` 已包含在 `unilabos-env` 中,无需单独安装
|
||||
- `unilabos/utils/requirements.txt` 包含运行 unilabos 所需的所有 pip 依赖
|
||||
- 部分特殊包(如 pylabrobot)会在运行时由 unilabos 自动检测并安装
|
||||
**参数说明**:
|
||||
|
||||
**为什么使用可编辑模式?**
|
||||
|
||||
- `-e` (editable mode):代码修改**立即生效**,无需重新安装
|
||||
- 适合开发调试:修改代码后直接运行测试
|
||||
- 与 `unilabos-env` 配合:环境依赖由 conda 管理,unilabos 代码由 pip 管理
|
||||
|
||||
**验证安装**:
|
||||
|
||||
```bash
|
||||
# 检查 unilabos 版本
|
||||
python -c "import unilabos; print(unilabos.__version__)"
|
||||
|
||||
# 检查安装位置(应该指向你的代码目录)
|
||||
pip show unilabos | grep Location
|
||||
```
|
||||
- `-e`: editable mode(可编辑模式),代码修改立即生效,无需重新安装
|
||||
- `-i`: 使用清华镜像源加速下载
|
||||
- `pip uninstall unilabos`: 只卸载 pip 安装的 unilabos 包,不影响 conda 安装的其他依赖(如 ROS2、msgs 等)
|
||||
|
||||
### 第四步:安装或自定义 ros-humble-unilabos-msgs(可选)
|
||||
|
||||
@@ -531,45 +464,7 @@ cd $CONDA_PREFIX/envs/unilab
|
||||
|
||||
### 问题 8: 环境很大,有办法减小吗?
|
||||
|
||||
**解决方案**:
|
||||
|
||||
1. **使用 `unilabos` 标准版**(推荐大多数用户):
|
||||
```bash
|
||||
mamba install uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
```
|
||||
标准版包含完整功能,环境大小约 2-3GB(相比完整版的 8-10GB)。
|
||||
|
||||
2. **使用 `unilabos-env` 开发者版**(最小化):
|
||||
```bash
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
# 然后手动安装依赖
|
||||
pip install -e .
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
```
|
||||
开发者版只包含环境依赖,体积最小约 2GB。
|
||||
|
||||
3. **按需安装额外组件**:
|
||||
如果后续需要特定功能,可以单独安装:
|
||||
```bash
|
||||
# 需要 Jupyter
|
||||
mamba install jupyter jupyros
|
||||
|
||||
# 需要可视化
|
||||
mamba install matplotlib opencv
|
||||
|
||||
# 需要仿真(注意:这会安装大量依赖)
|
||||
mamba install ros-humble-gazebo-ros
|
||||
```
|
||||
|
||||
4. **预打包环境问题**:
|
||||
预打包环境(方式一)包含所有依赖,通常较大(压缩后 2-5GB)。这是为了确保离线安装和完整功能。
|
||||
|
||||
**包选择建议**:
|
||||
| 需求 | 推荐包 | 预估大小 |
|
||||
|------|--------|----------|
|
||||
| 日常使用/生产部署 | `unilabos` | ~2-3 GB |
|
||||
| 开发调试(可编辑模式) | `unilabos-env` | ~2 GB |
|
||||
| 仿真/可视化 | `unilabos-full` | ~8-10 GB |
|
||||
**解决方案**: 预打包的环境包含所有依赖,通常较大(压缩后 2-5GB)。这是为了确保离线安装和完整功能。如果空间有限,考虑使用方式二手动安装,只安装需要的组件。
|
||||
|
||||
### 问题 9: 如何更新到最新版本?
|
||||
|
||||
@@ -616,7 +511,6 @@ mamba update ros-humble-unilabos-msgs -c uni-lab -c robostack-staging -c conda-f
|
||||
|
||||
**提示**:
|
||||
|
||||
- **大多数用户**推荐使用方式二(手动安装)的 `unilabos` 标准版
|
||||
- **开发者**推荐使用方式三(开发者安装),安装 `unilabos-env` 后使用 `uv pip install -r unilabos/utils/requirements.txt` 安装依赖
|
||||
- **仿真/可视化**推荐安装 `unilabos-full` 完整版
|
||||
- **快速体验和演示**推荐使用方式一(一键安装)
|
||||
- 生产环境推荐使用方式二(手动安装)的稳定版本
|
||||
- 开发和测试推荐使用方式三(开发者安装)
|
||||
- 快速体验和演示推荐使用方式一(一键安装)
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
package:
|
||||
name: ros-humble-unilabos-msgs
|
||||
version: 0.10.17
|
||||
version: 0.10.15
|
||||
source:
|
||||
path: ../../unilabos_msgs
|
||||
target_directory: src
|
||||
@@ -25,7 +25,7 @@ requirements:
|
||||
build:
|
||||
- ${{ compiler('cxx') }}
|
||||
- ${{ compiler('c') }}
|
||||
- python ==3.11.14
|
||||
- python ==3.11.11
|
||||
- numpy
|
||||
- if: build_platform != target_platform
|
||||
then:
|
||||
@@ -63,14 +63,14 @@ requirements:
|
||||
- robostack-staging::ros-humble-rosidl-default-generators
|
||||
- robostack-staging::ros-humble-std-msgs
|
||||
- robostack-staging::ros-humble-geometry-msgs
|
||||
- robostack-staging::ros2-distro-mutex=0.7
|
||||
- robostack-staging::ros2-distro-mutex=0.6
|
||||
run:
|
||||
- robostack-staging::ros-humble-action-msgs
|
||||
- robostack-staging::ros-humble-ros-workspace
|
||||
- robostack-staging::ros-humble-rosidl-default-runtime
|
||||
- robostack-staging::ros-humble-std-msgs
|
||||
- robostack-staging::ros-humble-geometry-msgs
|
||||
- robostack-staging::ros2-distro-mutex=0.7
|
||||
- robostack-staging::ros2-distro-mutex=0.6
|
||||
- if: osx and x86_64
|
||||
then:
|
||||
- __osx >=${{ MACOSX_DEPLOYMENT_TARGET|default('10.14') }}
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
package:
|
||||
name: unilabos
|
||||
version: "0.10.17"
|
||||
version: "0.10.15"
|
||||
|
||||
source:
|
||||
path: ../..
|
||||
|
||||
@@ -85,7 +85,7 @@ Verification:
|
||||
-------------
|
||||
|
||||
The verify_installation.py script will check:
|
||||
- Python version (3.11.14)
|
||||
- Python version (3.11.11)
|
||||
- ROS2 rclpy installation
|
||||
- UniLabOS installation and dependencies
|
||||
|
||||
@@ -104,7 +104,7 @@ Build Information:
|
||||
|
||||
Branch: {branch}
|
||||
Platform: {platform}
|
||||
Python: 3.11.14
|
||||
Python: 3.11.11
|
||||
Date: {build_date}
|
||||
|
||||
Troubleshooting:
|
||||
|
||||
@@ -1,214 +0,0 @@
|
||||
#!/usr/bin/env python3
|
||||
"""
|
||||
Development installation script for UniLabOS.
|
||||
Auto-detects Chinese locale and uses appropriate mirror.
|
||||
|
||||
Usage:
|
||||
python scripts/dev_install.py
|
||||
python scripts/dev_install.py --no-mirror # Force no mirror
|
||||
python scripts/dev_install.py --china # Force China mirror
|
||||
python scripts/dev_install.py --skip-deps # Skip pip dependencies installation
|
||||
|
||||
Flow:
|
||||
1. pip install -e . (install unilabos in editable mode)
|
||||
2. Detect Chinese locale
|
||||
3. Use uv to install pip dependencies from requirements.txt
|
||||
4. Special packages (like pylabrobot) are handled by environment_check.py at runtime
|
||||
"""
|
||||
|
||||
import locale
|
||||
import subprocess
|
||||
import sys
|
||||
import argparse
|
||||
from pathlib import Path
|
||||
|
||||
# Tsinghua mirror URL
|
||||
TSINGHUA_MIRROR = "https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple"
|
||||
|
||||
|
||||
def is_chinese_locale() -> bool:
|
||||
"""
|
||||
Detect if system is in Chinese locale.
|
||||
Same logic as EnvironmentChecker._is_chinese_locale()
|
||||
"""
|
||||
try:
|
||||
lang = locale.getdefaultlocale()[0]
|
||||
if lang and ("zh" in lang.lower() or "chinese" in lang.lower()):
|
||||
return True
|
||||
except Exception:
|
||||
pass
|
||||
return False
|
||||
|
||||
|
||||
def run_command(cmd: list, description: str, retry: int = 2) -> bool:
|
||||
"""Run command with retry support."""
|
||||
print(f"[INFO] {description}")
|
||||
print(f"[CMD] {' '.join(cmd)}")
|
||||
|
||||
for attempt in range(retry + 1):
|
||||
try:
|
||||
result = subprocess.run(cmd, check=True, timeout=600)
|
||||
print(f"[OK] {description}")
|
||||
return True
|
||||
except subprocess.CalledProcessError as e:
|
||||
if attempt < retry:
|
||||
print(f"[WARN] Attempt {attempt + 1} failed, retrying...")
|
||||
else:
|
||||
print(f"[ERROR] {description} failed: {e}")
|
||||
return False
|
||||
except subprocess.TimeoutExpired:
|
||||
print(f"[ERROR] {description} timed out")
|
||||
return False
|
||||
return False
|
||||
|
||||
|
||||
def install_editable(project_root: Path, use_mirror: bool) -> bool:
|
||||
"""Install unilabos in editable mode using pip."""
|
||||
cmd = [sys.executable, "-m", "pip", "install", "-e", str(project_root)]
|
||||
if use_mirror:
|
||||
cmd.extend(["-i", TSINGHUA_MIRROR])
|
||||
|
||||
return run_command(cmd, "Installing unilabos in editable mode")
|
||||
|
||||
|
||||
def install_requirements_uv(requirements_file: Path, use_mirror: bool) -> bool:
|
||||
"""Install pip dependencies using uv (installed via conda-forge::uv)."""
|
||||
cmd = ["uv", "pip", "install", "-r", str(requirements_file)]
|
||||
if use_mirror:
|
||||
cmd.extend(["-i", TSINGHUA_MIRROR])
|
||||
|
||||
return run_command(cmd, "Installing pip dependencies with uv", retry=2)
|
||||
|
||||
|
||||
def install_requirements_pip(requirements_file: Path, use_mirror: bool) -> bool:
|
||||
"""Fallback: Install pip dependencies using pip."""
|
||||
cmd = [sys.executable, "-m", "pip", "install", "-r", str(requirements_file)]
|
||||
if use_mirror:
|
||||
cmd.extend(["-i", TSINGHUA_MIRROR])
|
||||
|
||||
return run_command(cmd, "Installing pip dependencies with pip", retry=2)
|
||||
|
||||
|
||||
def check_uv_available() -> bool:
|
||||
"""Check if uv is available (installed via conda-forge::uv)."""
|
||||
try:
|
||||
subprocess.run(["uv", "--version"], capture_output=True, check=True)
|
||||
return True
|
||||
except (subprocess.CalledProcessError, FileNotFoundError):
|
||||
return False
|
||||
|
||||
|
||||
def main():
|
||||
parser = argparse.ArgumentParser(description="Development installation script for UniLabOS")
|
||||
parser.add_argument("--china", action="store_true", help="Force use China mirror (Tsinghua)")
|
||||
parser.add_argument("--no-mirror", action="store_true", help="Force use default PyPI (no mirror)")
|
||||
parser.add_argument(
|
||||
"--skip-deps", action="store_true", help="Skip pip dependencies installation (only install unilabos)"
|
||||
)
|
||||
parser.add_argument("--use-pip", action="store_true", help="Use pip instead of uv for dependencies")
|
||||
args = parser.parse_args()
|
||||
|
||||
# Determine project root
|
||||
script_dir = Path(__file__).parent
|
||||
project_root = script_dir.parent
|
||||
requirements_file = project_root / "unilabos" / "utils" / "requirements.txt"
|
||||
|
||||
if not (project_root / "setup.py").exists():
|
||||
print(f"[ERROR] setup.py not found in {project_root}")
|
||||
sys.exit(1)
|
||||
|
||||
print("=" * 60)
|
||||
print("UniLabOS Development Installation")
|
||||
print("=" * 60)
|
||||
print(f"Project root: {project_root}")
|
||||
print()
|
||||
|
||||
# Determine mirror usage based on locale
|
||||
if args.no_mirror:
|
||||
use_mirror = False
|
||||
print("[INFO] Mirror disabled by --no-mirror flag")
|
||||
elif args.china:
|
||||
use_mirror = True
|
||||
print("[INFO] China mirror enabled by --china flag")
|
||||
else:
|
||||
use_mirror = is_chinese_locale()
|
||||
if use_mirror:
|
||||
print("[INFO] Chinese locale detected, using Tsinghua mirror")
|
||||
else:
|
||||
print("[INFO] Non-Chinese locale detected, using default PyPI")
|
||||
|
||||
print()
|
||||
|
||||
# Step 1: Install unilabos in editable mode
|
||||
print("[STEP 1] Installing unilabos in editable mode...")
|
||||
if not install_editable(project_root, use_mirror):
|
||||
print("[ERROR] Failed to install unilabos")
|
||||
print()
|
||||
print("Manual fallback:")
|
||||
if use_mirror:
|
||||
print(f" pip install -e {project_root} -i {TSINGHUA_MIRROR}")
|
||||
else:
|
||||
print(f" pip install -e {project_root}")
|
||||
sys.exit(1)
|
||||
|
||||
print()
|
||||
|
||||
# Step 2: Install pip dependencies
|
||||
if args.skip_deps:
|
||||
print("[INFO] Skipping pip dependencies installation (--skip-deps)")
|
||||
else:
|
||||
print("[STEP 2] Installing pip dependencies...")
|
||||
|
||||
if not requirements_file.exists():
|
||||
print(f"[WARN] Requirements file not found: {requirements_file}")
|
||||
print("[INFO] Skipping dependencies installation")
|
||||
else:
|
||||
# Try uv first (faster), fallback to pip
|
||||
if args.use_pip:
|
||||
print("[INFO] Using pip (--use-pip flag)")
|
||||
success = install_requirements_pip(requirements_file, use_mirror)
|
||||
elif check_uv_available():
|
||||
print("[INFO] Using uv (installed via conda-forge::uv)")
|
||||
success = install_requirements_uv(requirements_file, use_mirror)
|
||||
if not success:
|
||||
print("[WARN] uv failed, falling back to pip...")
|
||||
success = install_requirements_pip(requirements_file, use_mirror)
|
||||
else:
|
||||
print("[WARN] uv not available (should be installed via: mamba install conda-forge::uv)")
|
||||
print("[INFO] Falling back to pip...")
|
||||
success = install_requirements_pip(requirements_file, use_mirror)
|
||||
|
||||
if not success:
|
||||
print()
|
||||
print("[WARN] Failed to install some dependencies automatically.")
|
||||
print("You can manually install them:")
|
||||
if use_mirror:
|
||||
print(f" uv pip install -r {requirements_file} -i {TSINGHUA_MIRROR}")
|
||||
print(" or:")
|
||||
print(f" pip install -r {requirements_file} -i {TSINGHUA_MIRROR}")
|
||||
else:
|
||||
print(f" uv pip install -r {requirements_file}")
|
||||
print(" or:")
|
||||
print(f" pip install -r {requirements_file}")
|
||||
|
||||
print()
|
||||
print("=" * 60)
|
||||
print("Installation complete!")
|
||||
print("=" * 60)
|
||||
print()
|
||||
print("Note: Some special packages (like pylabrobot) are installed")
|
||||
print("automatically at runtime by unilabos if needed.")
|
||||
print()
|
||||
print("Verify installation:")
|
||||
print(' python -c "import unilabos; print(unilabos.__version__)"')
|
||||
print()
|
||||
print("If you encounter issues, you can manually install dependencies:")
|
||||
if use_mirror:
|
||||
print(f" uv pip install -r unilabos/utils/requirements.txt -i {TSINGHUA_MIRROR}")
|
||||
else:
|
||||
print(" uv pip install -r unilabos/utils/requirements.txt")
|
||||
print()
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
main()
|
||||
2
setup.py
2
setup.py
@@ -4,7 +4,7 @@ package_name = 'unilabos'
|
||||
|
||||
setup(
|
||||
name=package_name,
|
||||
version='0.10.17',
|
||||
version='0.10.15',
|
||||
packages=find_packages(),
|
||||
include_package_data=True,
|
||||
install_requires=['setuptools'],
|
||||
|
||||
@@ -1,15 +0,0 @@
|
||||
# Liquid handling 集成测试
|
||||
|
||||
`test_transfer_liquid.py` 现在会调用 PRCXI 的 RViz 仿真 backend,运行前请确保:
|
||||
|
||||
1. 已安装包含 `pylabrobot`、`rclpy` 的运行环境;
|
||||
2. 启动 ROS 依赖(`rviz` 可选,但是 `rviz_backend` 会创建 ROS 节点);
|
||||
3. 在 shell 中设置 `UNILAB_SIM_TEST=1`,否则 pytest 会自动跳过这些慢速用例:
|
||||
|
||||
```bash
|
||||
export UNILAB_SIM_TEST=1
|
||||
pytest tests/devices/liquid_handling/test_transfer_liquid.py -m slow
|
||||
```
|
||||
|
||||
如果只需验证逻辑层(不依赖仿真),可以直接运行 `tests/devices/liquid_handling/unit_test.py`,该文件使用 Fake backend,适合作为 CI 的快速测试。***
|
||||
|
||||
@@ -1,547 +0,0 @@
|
||||
import asyncio
|
||||
from dataclasses import dataclass
|
||||
from typing import Any, Iterable, List, Optional, Sequence, Tuple
|
||||
|
||||
import pytest
|
||||
|
||||
from unilabos.devices.liquid_handling.liquid_handler_abstract import LiquidHandlerAbstract
|
||||
|
||||
|
||||
@dataclass(frozen=True)
|
||||
class DummyContainer:
|
||||
name: str
|
||||
|
||||
def __repr__(self) -> str: # pragma: no cover
|
||||
return f"DummyContainer({self.name})"
|
||||
|
||||
|
||||
@dataclass(frozen=True)
|
||||
class DummyTipSpot:
|
||||
name: str
|
||||
|
||||
def __repr__(self) -> str: # pragma: no cover
|
||||
return f"DummyTipSpot({self.name})"
|
||||
|
||||
|
||||
def make_tip_iter(n: int = 256) -> Iterable[List[DummyTipSpot]]:
|
||||
"""Yield lists so code can safely call `tip.extend(next(self.current_tip))`."""
|
||||
for i in range(n):
|
||||
yield [DummyTipSpot(f"tip_{i}")]
|
||||
|
||||
|
||||
class FakeLiquidHandler(LiquidHandlerAbstract):
|
||||
"""不初始化真实 backend/deck;仅用来记录 transfer_liquid 内部调用序列。"""
|
||||
|
||||
def __init__(self, channel_num: int = 8):
|
||||
# 不调用 super().__init__,避免真实硬件/后端依赖
|
||||
self.channel_num = channel_num
|
||||
self.support_touch_tip = True
|
||||
self.current_tip = iter(make_tip_iter())
|
||||
self.calls: List[Tuple[str, Any]] = []
|
||||
|
||||
async def pick_up_tips(self, tip_spots, use_channels=None, offsets=None, **backend_kwargs):
|
||||
self.calls.append(("pick_up_tips", {"tips": list(tip_spots), "use_channels": use_channels}))
|
||||
|
||||
async def aspirate(
|
||||
self,
|
||||
resources: Sequence[Any],
|
||||
vols: List[float],
|
||||
use_channels: Optional[List[int]] = None,
|
||||
flow_rates: Optional[List[Optional[float]]] = None,
|
||||
offsets: Any = None,
|
||||
liquid_height: Any = None,
|
||||
blow_out_air_volume: Any = None,
|
||||
spread: str = "wide",
|
||||
**backend_kwargs,
|
||||
):
|
||||
self.calls.append(
|
||||
(
|
||||
"aspirate",
|
||||
{
|
||||
"resources": list(resources),
|
||||
"vols": list(vols),
|
||||
"use_channels": list(use_channels) if use_channels is not None else None,
|
||||
"flow_rates": list(flow_rates) if flow_rates is not None else None,
|
||||
"offsets": list(offsets) if offsets is not None else None,
|
||||
"liquid_height": list(liquid_height) if liquid_height is not None else None,
|
||||
"blow_out_air_volume": list(blow_out_air_volume) if blow_out_air_volume is not None else None,
|
||||
},
|
||||
)
|
||||
)
|
||||
|
||||
async def dispense(
|
||||
self,
|
||||
resources: Sequence[Any],
|
||||
vols: List[float],
|
||||
use_channels: Optional[List[int]] = None,
|
||||
flow_rates: Optional[List[Optional[float]]] = None,
|
||||
offsets: Any = None,
|
||||
liquid_height: Any = None,
|
||||
blow_out_air_volume: Any = None,
|
||||
spread: str = "wide",
|
||||
**backend_kwargs,
|
||||
):
|
||||
self.calls.append(
|
||||
(
|
||||
"dispense",
|
||||
{
|
||||
"resources": list(resources),
|
||||
"vols": list(vols),
|
||||
"use_channels": list(use_channels) if use_channels is not None else None,
|
||||
"flow_rates": list(flow_rates) if flow_rates is not None else None,
|
||||
"offsets": list(offsets) if offsets is not None else None,
|
||||
"liquid_height": list(liquid_height) if liquid_height is not None else None,
|
||||
"blow_out_air_volume": list(blow_out_air_volume) if blow_out_air_volume is not None else None,
|
||||
},
|
||||
)
|
||||
)
|
||||
|
||||
async def discard_tips(self, use_channels=None, *args, **kwargs):
|
||||
# 有的分支是 discard_tips(use_channels=[0]),有的分支是 discard_tips([0..7])(位置参数)
|
||||
self.calls.append(("discard_tips", {"use_channels": list(use_channels) if use_channels is not None else None}))
|
||||
|
||||
async def custom_delay(self, seconds=0, msg=None):
|
||||
self.calls.append(("custom_delay", {"seconds": seconds, "msg": msg}))
|
||||
|
||||
async def touch_tip(self, targets):
|
||||
# 原实现会访问 targets.get_size_x() 等;测试里只记录调用
|
||||
self.calls.append(("touch_tip", {"targets": targets}))
|
||||
|
||||
def run(coro):
|
||||
return asyncio.run(coro)
|
||||
|
||||
|
||||
def test_one_to_one_single_channel_basic_calls():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(64))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(3)]
|
||||
targets = [DummyContainer(f"T{i}") for i in range(3)]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=[1, 2, 3],
|
||||
dis_vols=[4, 5, 6],
|
||||
mix_times=None, # 应该仍能执行(不 mix)
|
||||
)
|
||||
)
|
||||
|
||||
assert [c[0] for c in lh.calls].count("pick_up_tips") == 3
|
||||
assert [c[0] for c in lh.calls].count("aspirate") == 3
|
||||
assert [c[0] for c in lh.calls].count("dispense") == 3
|
||||
assert [c[0] for c in lh.calls].count("discard_tips") == 3
|
||||
|
||||
# 每次 aspirate/dispense 都是单孔列表
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
assert aspirates[0]["resources"] == [sources[0]]
|
||||
assert aspirates[0]["vols"] == [1.0]
|
||||
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert dispenses[2]["resources"] == [targets[2]]
|
||||
assert dispenses[2]["vols"] == [6.0]
|
||||
|
||||
|
||||
def test_one_to_one_single_channel_before_stage_mixes_prior_to_aspirate():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(16))
|
||||
|
||||
source = DummyContainer("S0")
|
||||
target = DummyContainer("T0")
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=[source],
|
||||
targets=[target],
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=[5],
|
||||
dis_vols=[5],
|
||||
mix_stage="before",
|
||||
mix_times=1,
|
||||
mix_vol=3,
|
||||
)
|
||||
)
|
||||
|
||||
aspirate_calls = [(idx, payload) for idx, (name, payload) in enumerate(lh.calls) if name == "aspirate"]
|
||||
assert len(aspirate_calls) >= 2
|
||||
mix_idx, mix_payload = aspirate_calls[0]
|
||||
assert mix_payload["resources"] == [target]
|
||||
assert mix_payload["vols"] == [3]
|
||||
transfer_idx, transfer_payload = aspirate_calls[1]
|
||||
assert transfer_payload["resources"] == [source]
|
||||
assert mix_idx < transfer_idx
|
||||
|
||||
|
||||
def test_one_to_one_eight_channel_groups_by_8():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(256))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(16)]
|
||||
targets = [DummyContainer(f"T{i}") for i in range(16)]
|
||||
asp_vols = list(range(1, 17))
|
||||
dis_vols = list(range(101, 117))
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=dis_vols,
|
||||
mix_times=0, # 触发逻辑但不 mix
|
||||
)
|
||||
)
|
||||
|
||||
# 16 个任务 -> 2 组,每组 8 通道一起做
|
||||
assert [c[0] for c in lh.calls].count("pick_up_tips") == 2
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert len(aspirates) == 2
|
||||
assert len(dispenses) == 2
|
||||
|
||||
assert aspirates[0]["resources"] == sources[0:8]
|
||||
assert aspirates[0]["vols"] == [float(v) for v in asp_vols[0:8]]
|
||||
assert dispenses[1]["resources"] == targets[8:16]
|
||||
assert dispenses[1]["vols"] == [float(v) for v in dis_vols[8:16]]
|
||||
|
||||
|
||||
def test_one_to_one_eight_channel_requires_multiple_of_8_targets():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(64))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(9)]
|
||||
targets = [DummyContainer(f"T{i}") for i in range(9)]
|
||||
|
||||
with pytest.raises(ValueError, match="multiple of 8"):
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=[1] * 9,
|
||||
dis_vols=[1] * 9,
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
|
||||
def test_one_to_one_eight_channel_parameter_lists_are_chunked_per_8():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(512))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(16)]
|
||||
targets = [DummyContainer(f"T{i}") for i in range(16)]
|
||||
asp_vols = [i + 1 for i in range(16)]
|
||||
dis_vols = [200 + i for i in range(16)]
|
||||
asp_flow_rates = [0.1 * (i + 1) for i in range(16)]
|
||||
dis_flow_rates = [0.2 * (i + 1) for i in range(16)]
|
||||
offsets = [f"offset_{i}" for i in range(16)]
|
||||
liquid_heights = [i * 0.5 for i in range(16)]
|
||||
blow_out_air_volume = [i + 0.05 for i in range(16)]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=dis_vols,
|
||||
asp_flow_rates=asp_flow_rates,
|
||||
dis_flow_rates=dis_flow_rates,
|
||||
offsets=offsets,
|
||||
liquid_height=liquid_heights,
|
||||
blow_out_air_volume=blow_out_air_volume,
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert len(aspirates) == len(dispenses) == 2
|
||||
|
||||
for batch_idx in range(2):
|
||||
start = batch_idx * 8
|
||||
end = start + 8
|
||||
asp_call = aspirates[batch_idx]
|
||||
dis_call = dispenses[batch_idx]
|
||||
assert asp_call["resources"] == sources[start:end]
|
||||
assert asp_call["flow_rates"] == asp_flow_rates[start:end]
|
||||
assert asp_call["offsets"] == offsets[start:end]
|
||||
assert asp_call["liquid_height"] == liquid_heights[start:end]
|
||||
assert asp_call["blow_out_air_volume"] == blow_out_air_volume[start:end]
|
||||
assert dis_call["flow_rates"] == dis_flow_rates[start:end]
|
||||
assert dis_call["offsets"] == offsets[start:end]
|
||||
assert dis_call["liquid_height"] == liquid_heights[start:end]
|
||||
assert dis_call["blow_out_air_volume"] == blow_out_air_volume[start:end]
|
||||
|
||||
|
||||
def test_one_to_one_eight_channel_handles_32_tasks_four_batches():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(1024))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(32)]
|
||||
targets = [DummyContainer(f"T{i}") for i in range(32)]
|
||||
asp_vols = [i + 1 for i in range(32)]
|
||||
dis_vols = [300 + i for i in range(32)]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=dis_vols,
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
pick_calls = [name for name, _ in lh.calls if name == "pick_up_tips"]
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert len(pick_calls) == 4
|
||||
assert len(aspirates) == len(dispenses) == 4
|
||||
assert aspirates[0]["resources"] == sources[0:8]
|
||||
assert aspirates[-1]["resources"] == sources[24:32]
|
||||
assert dispenses[0]["resources"] == targets[0:8]
|
||||
assert dispenses[-1]["resources"] == targets[24:32]
|
||||
|
||||
|
||||
def test_one_to_many_single_channel_aspirates_total_when_asp_vol_too_small():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(64))
|
||||
|
||||
source = DummyContainer("SRC")
|
||||
targets = [DummyContainer(f"T{i}") for i in range(3)]
|
||||
dis_vols = [10, 20, 30] # sum=60
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=[source],
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=10, # 小于 sum(dis_vols) -> 应吸 60
|
||||
dis_vols=dis_vols,
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
assert len(aspirates) == 1
|
||||
assert aspirates[0]["resources"] == [source]
|
||||
assert aspirates[0]["vols"] == [60.0]
|
||||
assert aspirates[0]["use_channels"] == [0]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert [d["vols"][0] for d in dispenses] == [10.0, 20.0, 30.0]
|
||||
|
||||
|
||||
def test_one_to_many_eight_channel_basic():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(128))
|
||||
|
||||
source = DummyContainer("SRC")
|
||||
targets = [DummyContainer(f"T{i}") for i in range(8)]
|
||||
dis_vols = [i + 1 for i in range(8)]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=[source],
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=999, # one-to-many 8ch 会按 dis_vols 吸(每通道各自)
|
||||
dis_vols=dis_vols,
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
assert aspirates[0]["resources"] == [source] * 8
|
||||
assert aspirates[0]["vols"] == [float(v) for v in dis_vols]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert dispenses[0]["resources"] == targets
|
||||
assert dispenses[0]["vols"] == [float(v) for v in dis_vols]
|
||||
|
||||
|
||||
def test_many_to_one_single_channel_standard_dispense_equals_asp_by_default():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(128))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(3)]
|
||||
target = DummyContainer("T")
|
||||
asp_vols = [5, 6, 7]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=[target],
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=1, # many-to-one 允许标量;非比例模式下实际每次分液=对应 asp_vol
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert [d["vols"][0] for d in dispenses] == [float(v) for v in asp_vols]
|
||||
assert all(d["resources"] == [target] for d in dispenses)
|
||||
|
||||
|
||||
def test_many_to_one_single_channel_before_stage_mixes_target_once():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(128))
|
||||
|
||||
sources = [DummyContainer("S0"), DummyContainer("S1")]
|
||||
target = DummyContainer("T")
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=[target],
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=[5, 6],
|
||||
dis_vols=1,
|
||||
mix_stage="before",
|
||||
mix_times=2,
|
||||
mix_vol=4,
|
||||
)
|
||||
)
|
||||
|
||||
aspirate_calls = [(idx, payload) for idx, (name, payload) in enumerate(lh.calls) if name == "aspirate"]
|
||||
assert len(aspirate_calls) >= 1
|
||||
mix_idx, mix_payload = aspirate_calls[0]
|
||||
assert mix_payload["resources"] == [target]
|
||||
assert mix_payload["vols"] == [4]
|
||||
# 第一個 mix 之後會真正開始吸 source
|
||||
assert any(call["resources"] == [sources[0]] for _, call in aspirate_calls[1:])
|
||||
|
||||
|
||||
def test_many_to_one_single_channel_proportional_mixing_uses_dis_vols_per_source():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(128))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(3)]
|
||||
target = DummyContainer("T")
|
||||
asp_vols = [5, 6, 7]
|
||||
dis_vols = [1, 2, 3]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=[target],
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=dis_vols, # 比例模式
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert [d["vols"][0] for d in dispenses] == [float(v) for v in dis_vols]
|
||||
|
||||
|
||||
def test_many_to_one_eight_channel_basic():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(256))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(8)]
|
||||
target = DummyContainer("T")
|
||||
asp_vols = [10 + i for i in range(8)]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=[target],
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=999, # 非比例模式下每通道分液=对应 asp_vol
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert aspirates[0]["resources"] == sources
|
||||
assert aspirates[0]["vols"] == [float(v) for v in asp_vols]
|
||||
assert dispenses[0]["resources"] == [target] * 8
|
||||
assert dispenses[0]["vols"] == [float(v) for v in asp_vols]
|
||||
|
||||
|
||||
def test_transfer_liquid_mode_detection_unsupported_shape_raises():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(64))
|
||||
|
||||
sources = [DummyContainer("S0"), DummyContainer("S1")]
|
||||
targets = [DummyContainer("T0"), DummyContainer("T1"), DummyContainer("T2")]
|
||||
|
||||
with pytest.raises(ValueError, match="Unsupported transfer mode"):
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=[1, 1],
|
||||
dis_vols=[1, 1, 1],
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
|
||||
def test_mix_single_target_produces_matching_cycles():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
target = DummyContainer("T_mix")
|
||||
|
||||
run(lh.mix(targets=[target], mix_time=2, mix_vol=5))
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert len(aspirates) == len(dispenses) == 2
|
||||
assert all(call["resources"] == [target] for call in aspirates)
|
||||
assert all(call["vols"] == [5] for call in aspirates)
|
||||
assert all(call["resources"] == [target] for call in dispenses)
|
||||
assert all(call["vols"] == [5] for call in dispenses)
|
||||
|
||||
|
||||
def test_mix_multiple_targets_supports_per_target_offsets():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
targets = [DummyContainer("T0"), DummyContainer("T1")]
|
||||
offsets = ["left", "right"]
|
||||
heights = [0.1, 0.2]
|
||||
rates = [0.5, 1.0]
|
||||
|
||||
run(
|
||||
lh.mix(
|
||||
targets=targets,
|
||||
mix_time=1,
|
||||
mix_vol=3,
|
||||
offsets=offsets,
|
||||
height_to_bottom=heights,
|
||||
mix_rate=rates,
|
||||
)
|
||||
)
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
assert len(aspirates) == 2
|
||||
assert aspirates[0]["resources"] == [targets[0]]
|
||||
assert aspirates[0]["offsets"] == [offsets[0]]
|
||||
assert aspirates[0]["liquid_height"] == [heights[0]]
|
||||
assert aspirates[0]["flow_rates"] == [rates[0]]
|
||||
assert aspirates[1]["resources"] == [targets[1]]
|
||||
assert aspirates[1]["offsets"] == [offsets[1]]
|
||||
assert aspirates[1]["liquid_height"] == [heights[1]]
|
||||
assert aspirates[1]["flow_rates"] == [rates[1]]
|
||||
|
||||
|
||||
@@ -1,213 +0,0 @@
|
||||
{
|
||||
"workflow": [
|
||||
{
|
||||
"action": "transfer_liquid",
|
||||
"action_args": {
|
||||
"sources": "cell_lines",
|
||||
"targets": "Liquid_1",
|
||||
"asp_vol": 100.0,
|
||||
"dis_vol": 74.75,
|
||||
"asp_flow_rate": 94.0,
|
||||
"dis_flow_rate": 95.5
|
||||
}
|
||||
},
|
||||
{
|
||||
"action": "transfer_liquid",
|
||||
"action_args": {
|
||||
"sources": "cell_lines",
|
||||
"targets": "Liquid_2",
|
||||
"asp_vol": 100.0,
|
||||
"dis_vol": 74.75,
|
||||
"asp_flow_rate": 94.0,
|
||||
"dis_flow_rate": 95.5
|
||||
}
|
||||
},
|
||||
{
|
||||
"action": "transfer_liquid",
|
||||
"action_args": {
|
||||
"sources": "cell_lines",
|
||||
"targets": "Liquid_3",
|
||||
"asp_vol": 100.0,
|
||||
"dis_vol": 74.75,
|
||||
"asp_flow_rate": 94.0,
|
||||
"dis_flow_rate": 95.5
|
||||
}
|
||||
},
|
||||
{
|
||||
"action": "transfer_liquid",
|
||||
"action_args": {
|
||||
"sources": "cell_lines_2",
|
||||
"targets": "Liquid_4",
|
||||
"asp_vol": 100.0,
|
||||
"dis_vol": 74.75,
|
||||
"asp_flow_rate": 94.0,
|
||||
"dis_flow_rate": 95.5
|
||||
}
|
||||
},
|
||||
{
|
||||
"action": "transfer_liquid",
|
||||
"action_args": {
|
||||
"sources": "cell_lines_2",
|
||||
"targets": "Liquid_5",
|
||||
"asp_vol": 100.0,
|
||||
"dis_vol": 74.75,
|
||||
"asp_flow_rate": 94.0,
|
||||
"dis_flow_rate": 95.5
|
||||
}
|
||||
},
|
||||
{
|
||||
"action": "transfer_liquid",
|
||||
"action_args": {
|
||||
"sources": "cell_lines_2",
|
||||
"targets": "Liquid_6",
|
||||
"asp_vol": 100.0,
|
||||
"dis_vol": 74.75,
|
||||
"asp_flow_rate": 94.0,
|
||||
"dis_flow_rate": 95.5
|
||||
}
|
||||
},
|
||||
{
|
||||
"action": "transfer_liquid",
|
||||
"action_args": {
|
||||
"sources": "cell_lines_3",
|
||||
"targets": "dest_set",
|
||||
"asp_vol": 100.0,
|
||||
"dis_vol": 74.75,
|
||||
"asp_flow_rate": 94.0,
|
||||
"dis_flow_rate": 95.5
|
||||
}
|
||||
},
|
||||
{
|
||||
"action": "transfer_liquid",
|
||||
"action_args": {
|
||||
"sources": "cell_lines_3",
|
||||
"targets": "dest_set_2",
|
||||
"asp_vol": 100.0,
|
||||
"dis_vol": 74.75,
|
||||
"asp_flow_rate": 94.0,
|
||||
"dis_flow_rate": 95.5
|
||||
}
|
||||
},
|
||||
{
|
||||
"action": "transfer_liquid",
|
||||
"action_args": {
|
||||
"sources": "cell_lines_3",
|
||||
"targets": "dest_set_3",
|
||||
"asp_vol": 100.0,
|
||||
"dis_vol": 74.75,
|
||||
"asp_flow_rate": 94.0,
|
||||
"dis_flow_rate": 95.5
|
||||
}
|
||||
}
|
||||
],
|
||||
"reagent": {
|
||||
"Liquid_1": {
|
||||
"slot": 1,
|
||||
"well": [
|
||||
"A4",
|
||||
"A7",
|
||||
"A10"
|
||||
],
|
||||
"labware": "rep 1"
|
||||
},
|
||||
"Liquid_4": {
|
||||
"slot": 1,
|
||||
"well": [
|
||||
"A4",
|
||||
"A7",
|
||||
"A10"
|
||||
],
|
||||
"labware": "rep 1"
|
||||
},
|
||||
"dest_set": {
|
||||
"slot": 1,
|
||||
"well": [
|
||||
"A4",
|
||||
"A7",
|
||||
"A10"
|
||||
],
|
||||
"labware": "rep 1"
|
||||
},
|
||||
"Liquid_2": {
|
||||
"slot": 2,
|
||||
"well": [
|
||||
"A3",
|
||||
"A5",
|
||||
"A8"
|
||||
],
|
||||
"labware": "rep 2"
|
||||
},
|
||||
"Liquid_5": {
|
||||
"slot": 2,
|
||||
"well": [
|
||||
"A3",
|
||||
"A5",
|
||||
"A8"
|
||||
],
|
||||
"labware": "rep 2"
|
||||
},
|
||||
"dest_set_2": {
|
||||
"slot": 2,
|
||||
"well": [
|
||||
"A3",
|
||||
"A5",
|
||||
"A8"
|
||||
],
|
||||
"labware": "rep 2"
|
||||
},
|
||||
"Liquid_3": {
|
||||
"slot": 3,
|
||||
"well": [
|
||||
"A4",
|
||||
"A6",
|
||||
"A10"
|
||||
],
|
||||
"labware": "rep 3"
|
||||
},
|
||||
"Liquid_6": {
|
||||
"slot": 3,
|
||||
"well": [
|
||||
"A4",
|
||||
"A6",
|
||||
"A10"
|
||||
],
|
||||
"labware": "rep 3"
|
||||
},
|
||||
"dest_set_3": {
|
||||
"slot": 3,
|
||||
"well": [
|
||||
"A4",
|
||||
"A6",
|
||||
"A10"
|
||||
],
|
||||
"labware": "rep 3"
|
||||
},
|
||||
"cell_lines": {
|
||||
"slot": 4,
|
||||
"well": [
|
||||
"A1",
|
||||
"A3",
|
||||
"A5"
|
||||
],
|
||||
"labware": "DRUG + YOYO-MEDIA"
|
||||
},
|
||||
"cell_lines_2": {
|
||||
"slot": 4,
|
||||
"well": [
|
||||
"A1",
|
||||
"A3",
|
||||
"A5"
|
||||
],
|
||||
"labware": "DRUG + YOYO-MEDIA"
|
||||
},
|
||||
"cell_lines_3": {
|
||||
"slot": 4,
|
||||
"well": [
|
||||
"A1",
|
||||
"A3",
|
||||
"A5"
|
||||
],
|
||||
"labware": "DRUG + YOYO-MEDIA"
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1 +1 @@
|
||||
__version__ = "0.10.17"
|
||||
__version__ = "0.10.15"
|
||||
|
||||
@@ -7,6 +7,7 @@ import sys
|
||||
import threading
|
||||
import time
|
||||
from typing import Dict, Any, List
|
||||
|
||||
import networkx as nx
|
||||
import yaml
|
||||
|
||||
@@ -16,9 +17,9 @@ unilabos_dir = os.path.dirname(os.path.dirname(current_dir))
|
||||
if unilabos_dir not in sys.path:
|
||||
sys.path.append(unilabos_dir)
|
||||
|
||||
from unilabos.app.utils import cleanup_for_restart
|
||||
from unilabos.utils.banner_print import print_status, print_unilab_banner
|
||||
from unilabos.config.config import load_config, BasicConfig, HTTPConfig
|
||||
from unilabos.app.utils import cleanup_for_restart
|
||||
|
||||
# Global restart flags (used by ws_client and web/server)
|
||||
_restart_requested: bool = False
|
||||
@@ -160,12 +161,6 @@ def parse_args():
|
||||
default=False,
|
||||
help="Complete registry information",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--check_mode",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Run in check mode for CI: validates registry imports and ensures no file changes",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--no_update_feedback",
|
||||
action="store_true",
|
||||
@@ -216,10 +211,7 @@ def main():
|
||||
args_dict = vars(args)
|
||||
|
||||
# 环境检查 - 检查并自动安装必需的包 (可选)
|
||||
skip_env_check = args_dict.get("skip_env_check", False)
|
||||
check_mode = args_dict.get("check_mode", False)
|
||||
|
||||
if not skip_env_check:
|
||||
if not args_dict.get("skip_env_check", False):
|
||||
from unilabos.utils.environment_check import check_environment
|
||||
|
||||
if not check_environment(auto_install=True):
|
||||
@@ -230,21 +222,7 @@ def main():
|
||||
|
||||
# 加载配置文件,优先加载config,然后从env读取
|
||||
config_path = args_dict.get("config")
|
||||
|
||||
if check_mode:
|
||||
args_dict["working_dir"] = os.path.abspath(os.getcwd())
|
||||
# 当 skip_env_check 时,默认使用当前目录作为 working_dir
|
||||
if skip_env_check and not args_dict.get("working_dir") and not config_path:
|
||||
working_dir = os.path.abspath(os.getcwd())
|
||||
print_status(f"跳过环境检查模式:使用当前目录作为工作目录 {working_dir}", "info")
|
||||
# 检查当前目录是否有 local_config.py
|
||||
local_config_in_cwd = os.path.join(working_dir, "local_config.py")
|
||||
if os.path.exists(local_config_in_cwd):
|
||||
config_path = local_config_in_cwd
|
||||
print_status(f"发现本地配置文件: {config_path}", "info")
|
||||
else:
|
||||
print_status(f"未指定config路径,可通过 --config 传入 local_config.py 文件路径", "info")
|
||||
elif os.getcwd().endswith("unilabos_data"):
|
||||
if os.getcwd().endswith("unilabos_data"):
|
||||
working_dir = os.path.abspath(os.getcwd())
|
||||
else:
|
||||
working_dir = os.path.abspath(os.path.join(os.getcwd(), "unilabos_data"))
|
||||
@@ -263,7 +241,7 @@ def main():
|
||||
working_dir = os.path.dirname(config_path)
|
||||
elif os.path.exists(working_dir) and os.path.exists(os.path.join(working_dir, "local_config.py")):
|
||||
config_path = os.path.join(working_dir, "local_config.py")
|
||||
elif not skip_env_check and not config_path and (
|
||||
elif not config_path and (
|
||||
not os.path.exists(working_dir) or not os.path.exists(os.path.join(working_dir, "local_config.py"))
|
||||
):
|
||||
print_status(f"未指定config路径,可通过 --config 传入 local_config.py 文件路径", "info")
|
||||
@@ -277,11 +255,9 @@ def main():
|
||||
print_status(f"已创建 local_config.py 路径: {config_path}", "info")
|
||||
else:
|
||||
os._exit(1)
|
||||
|
||||
# 加载配置文件 (check_mode 跳过)
|
||||
# 加载配置文件
|
||||
print_status(f"当前工作目录为 {working_dir}", "info")
|
||||
if not check_mode:
|
||||
load_config_from_file(config_path)
|
||||
load_config_from_file(config_path)
|
||||
|
||||
# 根据配置重新设置日志级别
|
||||
from unilabos.utils.log import configure_logger, logger
|
||||
@@ -337,7 +313,6 @@ def main():
|
||||
machine_name = "".join([c if c.isalnum() or c == "_" else "_" for c in machine_name])
|
||||
BasicConfig.machine_name = machine_name
|
||||
BasicConfig.vis_2d_enable = args_dict["2d_vis"]
|
||||
BasicConfig.check_mode = check_mode
|
||||
|
||||
from unilabos.resources.graphio import (
|
||||
read_node_link_json,
|
||||
@@ -356,14 +331,10 @@ def main():
|
||||
# 显示启动横幅
|
||||
print_unilab_banner(args_dict)
|
||||
|
||||
# 注册表 - check_mode 时强制启用 complete_registry
|
||||
complete_registry = args_dict.get("complete_registry", False) or check_mode
|
||||
lab_registry = build_registry(args_dict["registry_path"], complete_registry, BasicConfig.upload_registry)
|
||||
|
||||
# Check mode: complete_registry 完成后直接退出,git diff 检测由 CI workflow 执行
|
||||
if check_mode:
|
||||
print_status("Check mode: complete_registry 完成,退出", "info")
|
||||
os._exit(0)
|
||||
# 注册表
|
||||
lab_registry = build_registry(
|
||||
args_dict["registry_path"], args_dict.get("complete_registry", False), BasicConfig.upload_registry
|
||||
)
|
||||
|
||||
if BasicConfig.upload_registry:
|
||||
# 设备注册到服务端 - 需要 ak 和 sk
|
||||
|
||||
@@ -54,7 +54,6 @@ class JobAddReq(BaseModel):
|
||||
action_type: str = Field(
|
||||
examples=["unilabos_msgs.action._str_single_input.StrSingleInput"], description="action type", default=""
|
||||
)
|
||||
sample_material: dict = Field(examples=[{"string": "string"}], description="sample uuid to material uuid")
|
||||
action_args: dict = Field(examples=[{"string": "string"}], description="action arguments", default_factory=dict)
|
||||
task_id: str = Field(examples=["task_id"], description="task uuid (auto-generated if empty)", default="")
|
||||
job_id: str = Field(examples=["job_id"], description="goal uuid (auto-generated if empty)", default="")
|
||||
|
||||
@@ -4,40 +4,8 @@ UniLabOS 应用工具函数
|
||||
提供清理、重启等工具函数
|
||||
"""
|
||||
|
||||
import glob
|
||||
import os
|
||||
import shutil
|
||||
import sys
|
||||
|
||||
|
||||
def patch_rclpy_dll_windows():
|
||||
"""在 Windows + conda 环境下为 rclpy 打 DLL 加载补丁"""
|
||||
if sys.platform != "win32" or not os.environ.get("CONDA_PREFIX"):
|
||||
return
|
||||
try:
|
||||
import rclpy
|
||||
|
||||
return
|
||||
except ImportError as e:
|
||||
if not str(e).startswith("DLL load failed"):
|
||||
return
|
||||
cp = os.environ["CONDA_PREFIX"]
|
||||
impl = os.path.join(cp, "Lib", "site-packages", "rclpy", "impl", "implementation_singleton.py")
|
||||
pyd = glob.glob(os.path.join(cp, "Lib", "site-packages", "rclpy", "_rclpy_pybind11*.pyd"))
|
||||
if not os.path.exists(impl) or not pyd:
|
||||
return
|
||||
with open(impl, "r", encoding="utf-8") as f:
|
||||
content = f.read()
|
||||
lib_bin = os.path.join(cp, "Library", "bin").replace("\\", "/")
|
||||
patch = f'# UniLabOS DLL Patch\nimport os,ctypes\nos.add_dll_directory("{lib_bin}") if hasattr(os,"add_dll_directory") else None\ntry: ctypes.CDLL("{pyd[0].replace(chr(92),"/")}")\nexcept: pass\n# End Patch\n'
|
||||
shutil.copy2(impl, impl + ".bak")
|
||||
with open(impl, "w", encoding="utf-8") as f:
|
||||
f.write(patch + content)
|
||||
|
||||
|
||||
patch_rclpy_dll_windows()
|
||||
|
||||
import gc
|
||||
import os
|
||||
import threading
|
||||
import time
|
||||
|
||||
|
||||
@@ -359,7 +359,9 @@ class HTTPClient:
|
||||
Returns:
|
||||
Dict: API响应数据,包含 code 和 data (uuid, name)
|
||||
"""
|
||||
# target_lab_uuid 暂时使用默认值,后续由后端根据 ak/sk 获取
|
||||
payload = {
|
||||
"target_lab_uuid": "28c38bb0-63f6-4352-b0d8-b5b8eb1766d5",
|
||||
"name": name,
|
||||
"data": {
|
||||
"workflow_uuid": workflow_uuid,
|
||||
|
||||
@@ -327,7 +327,6 @@ def job_add(req: JobAddReq) -> JobData:
|
||||
queue_item,
|
||||
action_type=action_type,
|
||||
action_kwargs=action_args,
|
||||
sample_material=req.sample_material,
|
||||
server_info=server_info,
|
||||
)
|
||||
|
||||
|
||||
@@ -540,7 +540,7 @@ class MessageProcessor:
|
||||
try:
|
||||
message_str = json.dumps(msg, ensure_ascii=False)
|
||||
await self.websocket.send(message_str)
|
||||
# logger.trace(f"[MessageProcessor] Message sent: {msg.get('action', 'unknown')}") # type: ignore # noqa: E501
|
||||
logger.trace(f"[MessageProcessor] Message sent: {msg.get('action', 'unknown')}") # type: ignore # noqa: E501
|
||||
except Exception as e:
|
||||
logger.error(f"[MessageProcessor] Failed to send message: {str(e)}")
|
||||
logger.error(traceback.format_exc())
|
||||
@@ -652,8 +652,6 @@ class MessageProcessor:
|
||||
async def _handle_job_start(self, data: Dict[str, Any]):
|
||||
"""处理job_start消息"""
|
||||
try:
|
||||
if not data.get("sample_material"):
|
||||
data["sample_material"] = {}
|
||||
req = JobAddReq(**data)
|
||||
|
||||
job_log = format_job_log(req.job_id, req.task_id, req.device_id, req.action)
|
||||
@@ -685,7 +683,6 @@ class MessageProcessor:
|
||||
queue_item,
|
||||
action_type=req.action_type,
|
||||
action_kwargs=req.action_args,
|
||||
sample_material=req.sample_material,
|
||||
server_info=req.server_info,
|
||||
)
|
||||
|
||||
@@ -905,28 +902,28 @@ class MessageProcessor:
|
||||
async def _handle_request_restart(self, data: Dict[str, Any]):
|
||||
"""
|
||||
处理重启请求
|
||||
|
||||
|
||||
当LabGo发送request_restart时,执行清理并触发重启
|
||||
"""
|
||||
reason = data.get("reason", "unknown")
|
||||
delay = data.get("delay", 2) # 默认延迟2秒
|
||||
logger.info(f"[MessageProcessor] Received restart request, reason: {reason}, delay: {delay}s")
|
||||
|
||||
|
||||
# 发送确认消息
|
||||
if self.websocket_client:
|
||||
await self.websocket_client.send_message({
|
||||
"action": "restart_acknowledged",
|
||||
"data": {"reason": reason, "delay": delay}
|
||||
})
|
||||
|
||||
|
||||
# 设置全局重启标志
|
||||
import unilabos.app.main as main_module
|
||||
main_module._restart_requested = True
|
||||
main_module._restart_reason = reason
|
||||
|
||||
|
||||
# 延迟后执行清理
|
||||
await asyncio.sleep(delay)
|
||||
|
||||
|
||||
# 在新线程中执行清理,避免阻塞当前事件循环
|
||||
def do_cleanup():
|
||||
import time
|
||||
@@ -940,7 +937,7 @@ class MessageProcessor:
|
||||
logger.error("[MessageProcessor] Cleanup failed")
|
||||
except Exception as e:
|
||||
logger.error(f"[MessageProcessor] Error during cleanup: {e}")
|
||||
|
||||
|
||||
cleanup_thread = threading.Thread(target=do_cleanup, name="RestartCleanupThread", daemon=True)
|
||||
cleanup_thread.start()
|
||||
logger.info(f"[MessageProcessor] Restart cleanup scheduled")
|
||||
@@ -1297,7 +1294,7 @@ class WebSocketClient(BaseCommunicationClient):
|
||||
},
|
||||
}
|
||||
self.message_processor.send_message(message)
|
||||
# logger.trace(f"[WebSocketClient] Device status published: {device_id}.{property_name}")
|
||||
logger.trace(f"[WebSocketClient] Device status published: {device_id}.{property_name}")
|
||||
|
||||
def publish_job_status(
|
||||
self, feedback_data: dict, item: QueueItem, status: str, return_info: Optional[dict] = None
|
||||
@@ -1378,7 +1375,7 @@ class WebSocketClient(BaseCommunicationClient):
|
||||
# 收集设备信息
|
||||
devices = []
|
||||
machine_name = BasicConfig.machine_name
|
||||
|
||||
|
||||
try:
|
||||
host_node = HostNode.get_instance(0)
|
||||
if host_node:
|
||||
@@ -1386,7 +1383,7 @@ class WebSocketClient(BaseCommunicationClient):
|
||||
for device_id, namespace in host_node.devices_names.items():
|
||||
device_key = f"{namespace}/{device_id}" if namespace.startswith("/") else f"/{namespace}/{device_id}"
|
||||
is_online = device_key in host_node._online_devices
|
||||
|
||||
|
||||
# 获取设备的动作信息
|
||||
actions = {}
|
||||
for action_id, client in host_node._action_clients.items():
|
||||
@@ -1397,7 +1394,7 @@ class WebSocketClient(BaseCommunicationClient):
|
||||
"action_path": action_id,
|
||||
"action_type": str(type(client).__name__),
|
||||
}
|
||||
|
||||
|
||||
devices.append({
|
||||
"device_id": device_id,
|
||||
"namespace": namespace,
|
||||
@@ -1406,7 +1403,7 @@ class WebSocketClient(BaseCommunicationClient):
|
||||
"machine_name": host_node.device_machine_names.get(device_id, machine_name),
|
||||
"actions": actions,
|
||||
})
|
||||
|
||||
|
||||
logger.info(f"[WebSocketClient] Collected {len(devices)} devices for host_ready")
|
||||
except Exception as e:
|
||||
logger.warning(f"[WebSocketClient] Error collecting device info: {e}")
|
||||
|
||||
@@ -95,29 +95,8 @@ def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
|
||||
return total_volume
|
||||
|
||||
|
||||
def is_integrated_pump(node_class: str, node_name: str = "") -> bool:
|
||||
"""
|
||||
判断是否为泵阀一体设备
|
||||
"""
|
||||
class_lower = (node_class or "").lower()
|
||||
name_lower = (node_name or "").lower()
|
||||
|
||||
if "pump" not in class_lower and "pump" not in name_lower:
|
||||
return False
|
||||
|
||||
integrated_markers = [
|
||||
"valve",
|
||||
"pump_valve",
|
||||
"pumpvalve",
|
||||
"integrated",
|
||||
"transfer_pump",
|
||||
]
|
||||
|
||||
for marker in integrated_markers:
|
||||
if marker in class_lower or marker in name_lower:
|
||||
return True
|
||||
|
||||
return False
|
||||
def is_integrated_pump(node_name):
|
||||
return "pump" in node_name and "valve" in node_name
|
||||
|
||||
|
||||
def find_connected_pump(G, valve_node):
|
||||
@@ -207,9 +186,7 @@ def build_pump_valve_maps(G, pump_backbone):
|
||||
debug_print(f"🔧 过滤后的骨架: {filtered_backbone}")
|
||||
|
||||
for node in filtered_backbone:
|
||||
node_data = G.nodes.get(node, {})
|
||||
node_class = node_data.get("class", "") or ""
|
||||
if is_integrated_pump(node_class, node):
|
||||
if is_integrated_pump(G.nodes[node]["class"]):
|
||||
pumps_from_node[node] = node
|
||||
valve_from_node[node] = node
|
||||
debug_print(f" - 集成泵-阀: {node}")
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
@@ -43,7 +43,7 @@ class Base(ABC):
|
||||
self._type = typ
|
||||
self._data_type = data_type
|
||||
self._node: Optional[Node] = None
|
||||
|
||||
|
||||
def _get_node(self) -> Node:
|
||||
if self._node is None:
|
||||
try:
|
||||
@@ -66,7 +66,7 @@ class Base(ABC):
|
||||
# 直接以字符串形式处理
|
||||
if isinstance(nid, str):
|
||||
nid = nid.strip()
|
||||
|
||||
|
||||
# 处理包含类名的格式,如 'StringNodeId(ns=4;s=...)' 或 'NumericNodeId(ns=2;i=...)'
|
||||
# 提取括号内的内容
|
||||
match_wrapped = re.match(r'(String|Numeric|Byte|Guid|TwoByteNode|FourByteNode)NodeId\((.*)\)', nid)
|
||||
@@ -116,16 +116,16 @@ class Base(ABC):
|
||||
def read(self) -> Tuple[Any, bool]:
|
||||
"""读取节点值,返回(值, 是否出错)"""
|
||||
pass
|
||||
|
||||
|
||||
@abstractmethod
|
||||
def write(self, value: Any) -> bool:
|
||||
"""写入节点值,返回是否出错"""
|
||||
pass
|
||||
|
||||
|
||||
@property
|
||||
def type(self) -> NodeType:
|
||||
return self._type
|
||||
|
||||
|
||||
@property
|
||||
def node_id(self) -> str:
|
||||
return self._node_id
|
||||
@@ -210,15 +210,15 @@ class Method(Base):
|
||||
super().__init__(client, name, node_id, NodeType.METHOD, data_type)
|
||||
self._parent_node_id = parent_node_id
|
||||
self._parent_node = None
|
||||
|
||||
|
||||
def _get_parent_node(self) -> Node:
|
||||
if self._parent_node is None:
|
||||
try:
|
||||
# 处理父节点ID,使用与_get_node相同的解析逻辑
|
||||
import re
|
||||
|
||||
|
||||
nid = self._parent_node_id
|
||||
|
||||
|
||||
# 如果已经是 NodeId 对象,直接使用
|
||||
try:
|
||||
from opcua.ua import NodeId as UaNodeId
|
||||
@@ -227,16 +227,16 @@ class Method(Base):
|
||||
return self._parent_node
|
||||
except Exception:
|
||||
pass
|
||||
|
||||
|
||||
# 字符串处理
|
||||
if isinstance(nid, str):
|
||||
nid = nid.strip()
|
||||
|
||||
|
||||
# 处理包含类名的格式
|
||||
match_wrapped = re.match(r'(String|Numeric|Byte|Guid|TwoByteNode|FourByteNode)NodeId\((.*)\)', nid)
|
||||
if match_wrapped:
|
||||
nid = match_wrapped.group(2).strip()
|
||||
|
||||
|
||||
# 常见短格式
|
||||
if re.match(r'^ns=\d+;[is]=', nid):
|
||||
self._parent_node = self._client.get_node(nid)
|
||||
@@ -271,7 +271,7 @@ class Method(Base):
|
||||
def write(self, value: Any) -> bool:
|
||||
"""方法节点不支持写入操作"""
|
||||
return True
|
||||
|
||||
|
||||
def call(self, *args) -> Tuple[Any, bool]:
|
||||
"""调用方法,返回(返回值, 是否出错)"""
|
||||
try:
|
||||
@@ -285,7 +285,7 @@ class Method(Base):
|
||||
class Object(Base):
|
||||
def __init__(self, client: Client, name: str, node_id: str):
|
||||
super().__init__(client, name, node_id, NodeType.OBJECT, None)
|
||||
|
||||
|
||||
def read(self) -> Tuple[Any, bool]:
|
||||
"""对象节点不支持直接读取操作"""
|
||||
return None, True
|
||||
@@ -293,7 +293,7 @@ class Object(Base):
|
||||
def write(self, value: Any) -> bool:
|
||||
"""对象节点不支持直接写入操作"""
|
||||
return True
|
||||
|
||||
|
||||
def get_children(self) -> Tuple[List[Node], bool]:
|
||||
"""获取子节点列表,返回(子节点列表, 是否出错)"""
|
||||
try:
|
||||
@@ -301,4 +301,4 @@ class Object(Base):
|
||||
return children, False
|
||||
except Exception as e:
|
||||
print(f"获取对象 {self._name} 的子节点失败: {e}")
|
||||
return [], True
|
||||
return [], True
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
@@ -15,35 +15,35 @@ class VirtualPumpMode(Enum):
|
||||
|
||||
class VirtualTransferPump:
|
||||
"""虚拟转移泵类 - 模拟泵的基本功能,无需实际硬件 🚰"""
|
||||
|
||||
|
||||
_ros_node: BaseROS2DeviceNode
|
||||
|
||||
|
||||
def __init__(self, device_id: str = None, config: dict = None, **kwargs):
|
||||
"""
|
||||
初始化虚拟转移泵
|
||||
|
||||
|
||||
Args:
|
||||
device_id: 设备ID
|
||||
config: 配置字典,包含max_volume, port等参数
|
||||
**kwargs: 其他参数,确保兼容性
|
||||
"""
|
||||
self.device_id = device_id or "virtual_transfer_pump"
|
||||
|
||||
|
||||
# 从config或kwargs中获取参数,确保类型正确
|
||||
if config:
|
||||
self.max_volume = float(config.get("max_volume", 25.0))
|
||||
self.port = config.get("port", "VIRTUAL")
|
||||
self.max_volume = float(config.get('max_volume', 25.0))
|
||||
self.port = config.get('port', 'VIRTUAL')
|
||||
else:
|
||||
self.max_volume = float(kwargs.get("max_volume", 25.0))
|
||||
self.port = kwargs.get("port", "VIRTUAL")
|
||||
|
||||
self._transfer_rate = float(kwargs.get("transfer_rate", 0))
|
||||
self.mode = kwargs.get("mode", VirtualPumpMode.Normal)
|
||||
|
||||
self.max_volume = float(kwargs.get('max_volume', 25.0))
|
||||
self.port = kwargs.get('port', 'VIRTUAL')
|
||||
|
||||
self._transfer_rate = float(kwargs.get('transfer_rate', 0))
|
||||
self.mode = kwargs.get('mode', VirtualPumpMode.Normal)
|
||||
|
||||
# 状态变量 - 确保都是正确类型
|
||||
self._status = "Idle"
|
||||
self._position = 0.0 # float
|
||||
self._max_velocity = 5.0 # float
|
||||
self._max_velocity = 5.0 # float
|
||||
self._current_volume = 0.0 # float
|
||||
|
||||
# 🚀 新增:快速模式设置 - 大幅缩短执行时间
|
||||
@@ -52,16 +52,14 @@ class VirtualTransferPump:
|
||||
self._fast_dispense_time = 1.0 # 快速喷射时间(秒)
|
||||
|
||||
self.logger = logging.getLogger(f"VirtualTransferPump.{self.device_id}")
|
||||
|
||||
|
||||
print(f"🚰 === 虚拟转移泵 {self.device_id} 已创建 === ✨")
|
||||
print(
|
||||
f"💨 快速模式: {'启用' if self._fast_mode else '禁用'} | 移动时间: {self._fast_move_time}s | 喷射时间: {self._fast_dispense_time}s"
|
||||
)
|
||||
print(f"💨 快速模式: {'启用' if self._fast_mode else '禁用'} | 移动时间: {self._fast_move_time}s | 喷射时间: {self._fast_dispense_time}s")
|
||||
print(f"📊 最大容量: {self.max_volume}mL | 端口: {self.port}")
|
||||
|
||||
|
||||
def post_init(self, ros_node: BaseROS2DeviceNode):
|
||||
self._ros_node = ros_node
|
||||
|
||||
|
||||
async def initialize(self) -> bool:
|
||||
"""初始化虚拟泵 🚀"""
|
||||
self.logger.info(f"🔧 初始化虚拟转移泵 {self.device_id} ✨")
|
||||
@@ -70,33 +68,33 @@ class VirtualTransferPump:
|
||||
self._current_volume = 0.0
|
||||
self.logger.info(f"✅ 转移泵 {self.device_id} 初始化完成 🚰")
|
||||
return True
|
||||
|
||||
|
||||
async def cleanup(self) -> bool:
|
||||
"""清理虚拟泵 🧹"""
|
||||
self.logger.info(f"🧹 清理虚拟转移泵 {self.device_id} 🔚")
|
||||
self._status = "Idle"
|
||||
self.logger.info(f"✅ 转移泵 {self.device_id} 清理完成 💤")
|
||||
return True
|
||||
|
||||
|
||||
# 基本属性
|
||||
@property
|
||||
def status(self) -> str:
|
||||
return self._status
|
||||
|
||||
|
||||
@property
|
||||
def position(self) -> float:
|
||||
"""当前柱塞位置 (ml) 📍"""
|
||||
return self._position
|
||||
|
||||
|
||||
@property
|
||||
def current_volume(self) -> float:
|
||||
"""当前注射器中的体积 (ml) 💧"""
|
||||
return self._current_volume
|
||||
|
||||
|
||||
@property
|
||||
def max_velocity(self) -> float:
|
||||
return self._max_velocity
|
||||
|
||||
|
||||
@property
|
||||
def transfer_rate(self) -> float:
|
||||
return self._transfer_rate
|
||||
@@ -105,17 +103,17 @@ class VirtualTransferPump:
|
||||
"""设置最大速度 (ml/s) 🌊"""
|
||||
self._max_velocity = max(0.1, min(50.0, velocity)) # 限制在合理范围内
|
||||
self.logger.info(f"🌊 设置最大速度为 {self._max_velocity} mL/s")
|
||||
|
||||
|
||||
def get_status(self) -> str:
|
||||
"""获取泵状态 📋"""
|
||||
return self._status
|
||||
|
||||
|
||||
async def _simulate_operation(self, duration: float):
|
||||
"""模拟操作延时 ⏱️"""
|
||||
self._status = "Busy"
|
||||
await self._ros_node.sleep(duration)
|
||||
self._status = "Idle"
|
||||
|
||||
|
||||
def _calculate_duration(self, volume: float, velocity: float = None) -> float:
|
||||
"""
|
||||
计算操作持续时间 ⏰
|
||||
@@ -123,10 +121,10 @@ class VirtualTransferPump:
|
||||
"""
|
||||
if velocity is None:
|
||||
velocity = self._max_velocity
|
||||
|
||||
|
||||
# 📊 计算理论时间(用于日志显示)
|
||||
theoretical_duration = abs(volume) / velocity
|
||||
|
||||
|
||||
# 🚀 如果启用快速模式,使用固定的快速时间
|
||||
if self._fast_mode:
|
||||
# 根据操作类型选择快速时间
|
||||
@@ -134,13 +132,13 @@ class VirtualTransferPump:
|
||||
actual_duration = self._fast_move_time
|
||||
else: # 很小的操作
|
||||
actual_duration = 0.5
|
||||
|
||||
|
||||
self.logger.debug(f"⚡ 快速模式: 理论时间 {theoretical_duration:.2f}s → 实际时间 {actual_duration:.2f}s")
|
||||
return actual_duration
|
||||
else:
|
||||
# 正常模式使用理论时间
|
||||
return theoretical_duration
|
||||
|
||||
|
||||
def _calculate_display_duration(self, volume: float, velocity: float = None) -> float:
|
||||
"""
|
||||
计算显示用的持续时间(用于日志) 📊
|
||||
@@ -149,16 +147,16 @@ class VirtualTransferPump:
|
||||
if velocity is None:
|
||||
velocity = self._max_velocity
|
||||
return abs(volume) / velocity
|
||||
|
||||
|
||||
# 新的set_position方法 - 专门用于SetPumpPosition动作
|
||||
async def set_position(self, position: float, max_velocity: float = None):
|
||||
"""
|
||||
移动到绝对位置 - 专门用于SetPumpPosition动作 🎯
|
||||
|
||||
|
||||
Args:
|
||||
position (float): 目标位置 (ml)
|
||||
max_velocity (float): 移动速度 (ml/s)
|
||||
|
||||
|
||||
Returns:
|
||||
dict: 符合SetPumpPosition.action定义的结果
|
||||
"""
|
||||
@@ -166,19 +164,19 @@ class VirtualTransferPump:
|
||||
# 验证并转换参数
|
||||
target_position = float(position)
|
||||
velocity = float(max_velocity) if max_velocity is not None else self._max_velocity
|
||||
|
||||
|
||||
# 限制位置在有效范围内
|
||||
target_position = max(0.0, min(float(self.max_volume), target_position))
|
||||
|
||||
|
||||
# 计算移动距离
|
||||
volume_to_move = abs(target_position - self._position)
|
||||
|
||||
|
||||
# 📊 计算显示用的时间(用于日志)
|
||||
display_duration = self._calculate_display_duration(volume_to_move, velocity)
|
||||
|
||||
|
||||
# ⚡ 计算实际执行时间(快速模式)
|
||||
actual_duration = self._calculate_duration(volume_to_move, velocity)
|
||||
|
||||
|
||||
# 🎯 确定操作类型和emoji
|
||||
if target_position > self._position:
|
||||
operation_type = "吸液"
|
||||
@@ -189,34 +187,28 @@ class VirtualTransferPump:
|
||||
else:
|
||||
operation_type = "保持"
|
||||
operation_emoji = "📍"
|
||||
|
||||
|
||||
self.logger.info(f"🎯 SET_POSITION: {operation_type} {operation_emoji}")
|
||||
self.logger.info(
|
||||
f" 📍 位置: {self._position:.2f}mL → {target_position:.2f}mL (移动 {volume_to_move:.2f}mL)"
|
||||
)
|
||||
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {target_position:.2f}mL (移动 {volume_to_move:.2f}mL)")
|
||||
self.logger.info(f" 🌊 速度: {velocity:.2f} mL/s")
|
||||
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
|
||||
|
||||
|
||||
if self._fast_mode:
|
||||
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
|
||||
|
||||
|
||||
# 🚀 模拟移动过程
|
||||
if volume_to_move > 0.01: # 只有当移动距离足够大时才显示进度
|
||||
start_position = self._position
|
||||
steps = 5 if actual_duration > 0.5 else 2 # 根据实际时间调整步数
|
||||
step_duration = actual_duration / steps
|
||||
|
||||
|
||||
self.logger.info(f"🚀 开始{operation_type}... {operation_emoji}")
|
||||
|
||||
|
||||
for i in range(steps + 1):
|
||||
# 计算当前位置和进度
|
||||
progress = (i / steps) * 100 if steps > 0 else 100
|
||||
current_pos = (
|
||||
start_position + (target_position - start_position) * (i / steps)
|
||||
if steps > 0
|
||||
else target_position
|
||||
)
|
||||
|
||||
current_pos = start_position + (target_position - start_position) * (i / steps) if steps > 0 else target_position
|
||||
|
||||
# 更新状态
|
||||
if i < steps:
|
||||
self._status = f"{operation_type}中"
|
||||
@@ -224,10 +216,10 @@ class VirtualTransferPump:
|
||||
else:
|
||||
self._status = "Idle"
|
||||
status_emoji = "✅"
|
||||
|
||||
|
||||
self._position = current_pos
|
||||
self._current_volume = current_pos
|
||||
|
||||
|
||||
# 显示进度(每25%或最后一步)
|
||||
if i == 0:
|
||||
self.logger.debug(f" 🔄 {operation_type}开始: {progress:.0f}%")
|
||||
@@ -235,7 +227,7 @@ class VirtualTransferPump:
|
||||
self.logger.debug(f" 🔄 {operation_type}进度: {progress:.0f}%")
|
||||
elif i == steps:
|
||||
self.logger.info(f" ✅ {operation_type}完成: {progress:.0f}% | 当前位置: {current_pos:.2f}mL")
|
||||
|
||||
|
||||
# 等待一小步时间
|
||||
if i < steps and step_duration > 0:
|
||||
await self._ros_node.sleep(step_duration)
|
||||
@@ -244,27 +236,25 @@ class VirtualTransferPump:
|
||||
self._position = target_position
|
||||
self._current_volume = target_position
|
||||
self.logger.info(f" 📍 微调完成: {target_position:.2f}mL")
|
||||
|
||||
|
||||
# 确保最终位置准确
|
||||
self._position = target_position
|
||||
self._current_volume = target_position
|
||||
self._status = "Idle"
|
||||
|
||||
|
||||
# 📊 最终状态日志
|
||||
if volume_to_move > 0.01:
|
||||
self.logger.info(
|
||||
f"🎉 SET_POSITION 完成! 📍 最终位置: {self._position:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL"
|
||||
)
|
||||
|
||||
self.logger.info(f"🎉 SET_POSITION 完成! 📍 最终位置: {self._position:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
|
||||
|
||||
# 返回符合action定义的结果
|
||||
return {
|
||||
"success": True,
|
||||
"message": f"✅ 成功移动到位置 {self._position:.2f}mL ({operation_type})",
|
||||
"final_position": self._position,
|
||||
"final_volume": self._current_volume,
|
||||
"operation_type": operation_type,
|
||||
"operation_type": operation_type
|
||||
}
|
||||
|
||||
|
||||
except Exception as e:
|
||||
error_msg = f"❌ 设置位置失败: {str(e)}"
|
||||
self.logger.error(error_msg)
|
||||
@@ -272,136 +262,134 @@ class VirtualTransferPump:
|
||||
"success": False,
|
||||
"message": error_msg,
|
||||
"final_position": self._position,
|
||||
"final_volume": self._current_volume,
|
||||
"final_volume": self._current_volume
|
||||
}
|
||||
|
||||
|
||||
# 其他泵操作方法
|
||||
async def pull_plunger(self, volume: float, velocity: float = None):
|
||||
"""
|
||||
拉取柱塞(吸液) 📥
|
||||
|
||||
|
||||
Args:
|
||||
volume (float): 要拉取的体积 (ml)
|
||||
velocity (float): 拉取速度 (ml/s)
|
||||
"""
|
||||
new_position = min(self.max_volume, self._position + volume)
|
||||
actual_volume = new_position - self._position
|
||||
|
||||
|
||||
if actual_volume <= 0:
|
||||
self.logger.warning("⚠️ 无法吸液 - 已达到最大容量")
|
||||
return
|
||||
|
||||
|
||||
display_duration = self._calculate_display_duration(actual_volume, velocity)
|
||||
actual_duration = self._calculate_duration(actual_volume, velocity)
|
||||
|
||||
|
||||
self.logger.info(f"📥 开始吸液: {actual_volume:.2f}mL")
|
||||
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {new_position:.2f}mL")
|
||||
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
|
||||
|
||||
|
||||
if self._fast_mode:
|
||||
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
|
||||
|
||||
|
||||
await self._simulate_operation(actual_duration)
|
||||
|
||||
|
||||
self._position = new_position
|
||||
self._current_volume = new_position
|
||||
|
||||
|
||||
self.logger.info(f"✅ 吸液完成: {actual_volume:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
|
||||
|
||||
async def push_plunger(self, volume: float, velocity: float = None):
|
||||
"""
|
||||
推出柱塞(排液) 📤
|
||||
|
||||
|
||||
Args:
|
||||
volume (float): 要推出的体积 (ml)
|
||||
velocity (float): 推出速度 (ml/s)
|
||||
"""
|
||||
new_position = max(0, self._position - volume)
|
||||
actual_volume = self._position - new_position
|
||||
|
||||
|
||||
if actual_volume <= 0:
|
||||
self.logger.warning("⚠️ 无法排液 - 已达到最小容量")
|
||||
return
|
||||
|
||||
|
||||
display_duration = self._calculate_display_duration(actual_volume, velocity)
|
||||
actual_duration = self._calculate_duration(actual_volume, velocity)
|
||||
|
||||
|
||||
self.logger.info(f"📤 开始排液: {actual_volume:.2f}mL")
|
||||
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {new_position:.2f}mL")
|
||||
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
|
||||
|
||||
|
||||
if self._fast_mode:
|
||||
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
|
||||
|
||||
|
||||
await self._simulate_operation(actual_duration)
|
||||
|
||||
|
||||
self._position = new_position
|
||||
self._current_volume = new_position
|
||||
|
||||
|
||||
self.logger.info(f"✅ 排液完成: {actual_volume:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
|
||||
|
||||
# 便捷操作方法
|
||||
async def aspirate(self, volume: float, velocity: float = None):
|
||||
"""吸液操作 📥"""
|
||||
await self.pull_plunger(volume, velocity)
|
||||
|
||||
|
||||
async def dispense(self, volume: float, velocity: float = None):
|
||||
"""排液操作 📤"""
|
||||
await self.push_plunger(volume, velocity)
|
||||
|
||||
|
||||
async def transfer(self, volume: float, aspirate_velocity: float = None, dispense_velocity: float = None):
|
||||
"""转移操作(先吸后排) 🔄"""
|
||||
self.logger.info(f"🔄 开始转移操作: {volume:.2f}mL")
|
||||
|
||||
|
||||
# 吸液
|
||||
await self.aspirate(volume, aspirate_velocity)
|
||||
|
||||
|
||||
# 短暂停顿
|
||||
self.logger.debug("⏸️ 短暂停顿...")
|
||||
await self._ros_node.sleep(0.1)
|
||||
|
||||
|
||||
# 排液
|
||||
await self.dispense(volume, dispense_velocity)
|
||||
|
||||
|
||||
async def empty_syringe(self, velocity: float = None):
|
||||
"""清空注射器"""
|
||||
await self.set_position(0, velocity)
|
||||
|
||||
|
||||
async def fill_syringe(self, velocity: float = None):
|
||||
"""充满注射器"""
|
||||
await self.set_position(self.max_volume, velocity)
|
||||
|
||||
|
||||
async def stop_operation(self):
|
||||
"""停止当前操作"""
|
||||
self._status = "Idle"
|
||||
self.logger.info("Operation stopped")
|
||||
|
||||
|
||||
# 状态查询方法
|
||||
def get_position(self) -> float:
|
||||
"""获取当前位置"""
|
||||
return self._position
|
||||
|
||||
|
||||
def get_current_volume(self) -> float:
|
||||
"""获取当前体积"""
|
||||
return self._current_volume
|
||||
|
||||
|
||||
def get_remaining_capacity(self) -> float:
|
||||
"""获取剩余容量"""
|
||||
return self.max_volume - self._current_volume
|
||||
|
||||
|
||||
def is_empty(self) -> bool:
|
||||
"""检查是否为空"""
|
||||
return self._current_volume <= 0.01 # 允许小量误差
|
||||
|
||||
|
||||
def is_full(self) -> bool:
|
||||
"""检查是否已满"""
|
||||
return self._current_volume >= (self.max_volume - 0.01) # 允许小量误差
|
||||
|
||||
|
||||
def __str__(self):
|
||||
return (
|
||||
f"VirtualTransferPump({self.device_id}: {self._current_volume:.2f}/{self.max_volume} ml, {self._status})"
|
||||
)
|
||||
|
||||
return f"VirtualTransferPump({self.device_id}: {self._current_volume:.2f}/{self.max_volume} ml, {self._status})"
|
||||
|
||||
def __repr__(self):
|
||||
return self.__str__()
|
||||
|
||||
@@ -410,20 +398,20 @@ class VirtualTransferPump:
|
||||
async def demo():
|
||||
"""虚拟泵使用示例"""
|
||||
pump = VirtualTransferPump("demo_pump", {"max_volume": 50.0})
|
||||
|
||||
|
||||
await pump.initialize()
|
||||
|
||||
|
||||
print(f"Initial state: {pump}")
|
||||
|
||||
|
||||
# 测试set_position方法
|
||||
result = await pump.set_position(10.0, max_velocity=2.0)
|
||||
print(f"Set position result: {result}")
|
||||
print(f"After setting position to 10ml: {pump}")
|
||||
|
||||
|
||||
# 吸液测试
|
||||
await pump.aspirate(5.0, velocity=2.0)
|
||||
print(f"After aspirating 5ml: {pump}")
|
||||
|
||||
|
||||
# 清空测试
|
||||
result = await pump.set_position(0.0)
|
||||
print(f"Empty result: {result}")
|
||||
|
||||
@@ -1,742 +0,0 @@
|
||||
"""
|
||||
Virtual Workbench Device - 模拟工作台设备
|
||||
包含:
|
||||
- 1个机械臂 (每次操作3s, 独占锁)
|
||||
- 3个加热台 (每次加热10s, 可并行)
|
||||
|
||||
工作流程:
|
||||
1. A1-A5 物料同时启动,竞争机械臂
|
||||
2. 机械臂将物料移动到空闲加热台
|
||||
3. 加热完成后,机械臂将物料移动到C1-C5
|
||||
|
||||
注意:调用来自线程池,使用 threading.Lock 进行同步
|
||||
"""
|
||||
|
||||
import logging
|
||||
import time
|
||||
from typing import Dict, Any, Optional, List
|
||||
from dataclasses import dataclass
|
||||
from enum import Enum
|
||||
from threading import Lock, RLock
|
||||
|
||||
from typing_extensions import TypedDict
|
||||
|
||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
|
||||
from unilabos.utils.decorator import not_action
|
||||
from unilabos.resources.resource_tracker import SampleUUIDsType, LabSample, RETURN_UNILABOS_SAMPLES
|
||||
|
||||
|
||||
# ============ TypedDict 返回类型定义 ============
|
||||
|
||||
|
||||
class MoveToHeatingStationResult(TypedDict):
|
||||
"""move_to_heating_station 返回类型"""
|
||||
|
||||
success: bool
|
||||
station_id: int
|
||||
material_id: str
|
||||
material_number: int
|
||||
message: str
|
||||
unilabos_samples: List[LabSample]
|
||||
|
||||
|
||||
class StartHeatingResult(TypedDict):
|
||||
"""start_heating 返回类型"""
|
||||
|
||||
success: bool
|
||||
station_id: int
|
||||
material_id: str
|
||||
material_number: int
|
||||
message: str
|
||||
unilabos_samples: List[LabSample]
|
||||
|
||||
|
||||
class MoveToOutputResult(TypedDict):
|
||||
"""move_to_output 返回类型"""
|
||||
|
||||
success: bool
|
||||
station_id: int
|
||||
material_id: str
|
||||
unilabos_samples: List[LabSample]
|
||||
|
||||
|
||||
class PrepareMaterialsResult(TypedDict):
|
||||
"""prepare_materials 返回类型 - 批量准备物料"""
|
||||
|
||||
success: bool
|
||||
count: int
|
||||
material_1: int # 物料编号1
|
||||
material_2: int # 物料编号2
|
||||
material_3: int # 物料编号3
|
||||
material_4: int # 物料编号4
|
||||
material_5: int # 物料编号5
|
||||
message: str
|
||||
unilabos_samples: List[LabSample]
|
||||
|
||||
|
||||
# ============ 状态枚举 ============
|
||||
|
||||
|
||||
class HeatingStationState(Enum):
|
||||
"""加热台状态枚举"""
|
||||
|
||||
IDLE = "idle" # 空闲
|
||||
OCCUPIED = "occupied" # 已放置物料,等待加热
|
||||
HEATING = "heating" # 加热中
|
||||
COMPLETED = "completed" # 加热完成,等待取走
|
||||
|
||||
|
||||
class ArmState(Enum):
|
||||
"""机械臂状态枚举"""
|
||||
|
||||
IDLE = "idle" # 空闲
|
||||
BUSY = "busy" # 工作中
|
||||
|
||||
|
||||
@dataclass
|
||||
class HeatingStation:
|
||||
"""加热台数据结构"""
|
||||
|
||||
station_id: int
|
||||
state: HeatingStationState = HeatingStationState.IDLE
|
||||
current_material: Optional[str] = None # 当前物料 (如 "A1", "A2")
|
||||
material_number: Optional[int] = None # 物料编号 (1-5)
|
||||
heating_start_time: Optional[float] = None
|
||||
heating_progress: float = 0.0
|
||||
|
||||
|
||||
class VirtualWorkbench:
|
||||
"""
|
||||
Virtual Workbench Device - 虚拟工作台设备
|
||||
|
||||
模拟一个包含1个机械臂和3个加热台的工作站
|
||||
- 机械臂操作耗时3秒,同一时间只能执行一个操作
|
||||
- 加热台加热耗时10秒,3个加热台可并行工作
|
||||
|
||||
工作流:
|
||||
1. 物料A1-A5并发启动(线程池),竞争机械臂使用权
|
||||
2. 获取机械臂后,查找空闲加热台
|
||||
3. 机械臂将物料放入加热台,开始加热
|
||||
4. 加热完成后,机械臂将物料移动到目标位置Cn
|
||||
"""
|
||||
|
||||
_ros_node: BaseROS2DeviceNode
|
||||
|
||||
# 配置常量
|
||||
ARM_OPERATION_TIME: float = 3.0 # 机械臂操作时间(秒)
|
||||
HEATING_TIME: float = 10.0 # 加热时间(秒)
|
||||
NUM_HEATING_STATIONS: int = 3 # 加热台数量
|
||||
|
||||
def __init__(self, device_id: Optional[str] = None, config: Optional[Dict[str, Any]] = None, **kwargs):
|
||||
# 处理可能的不同调用方式
|
||||
if device_id is None and "id" in kwargs:
|
||||
device_id = kwargs.pop("id")
|
||||
if config is None and "config" in kwargs:
|
||||
config = kwargs.pop("config")
|
||||
|
||||
self.device_id = device_id or "virtual_workbench"
|
||||
self.config = config or {}
|
||||
|
||||
self.logger = logging.getLogger(f"VirtualWorkbench.{self.device_id}")
|
||||
self.data: Dict[str, Any] = {}
|
||||
|
||||
# 从config中获取可配置参数
|
||||
self.ARM_OPERATION_TIME = float(self.config.get("arm_operation_time", 3.0))
|
||||
self.HEATING_TIME = float(self.config.get("heating_time", 10.0))
|
||||
self.NUM_HEATING_STATIONS = int(self.config.get("num_heating_stations", 3))
|
||||
|
||||
# 机械臂状态和锁 (使用threading.Lock)
|
||||
self._arm_lock = Lock()
|
||||
self._arm_state = ArmState.IDLE
|
||||
self._arm_current_task: Optional[str] = None
|
||||
|
||||
# 加热台状态 (station_id -> HeatingStation) - 立即初始化,不依赖initialize()
|
||||
self._heating_stations: Dict[int, HeatingStation] = {
|
||||
i: HeatingStation(station_id=i) for i in range(1, self.NUM_HEATING_STATIONS + 1)
|
||||
}
|
||||
self._stations_lock = RLock() # 可重入锁,保护加热台状态
|
||||
|
||||
# 任务追踪
|
||||
self._active_tasks: Dict[str, Dict[str, Any]] = {} # material_id -> task_info
|
||||
self._tasks_lock = Lock()
|
||||
|
||||
# 处理其他kwargs参数
|
||||
skip_keys = {"arm_operation_time", "heating_time", "num_heating_stations"}
|
||||
for key, value in kwargs.items():
|
||||
if key not in skip_keys and not hasattr(self, key):
|
||||
setattr(self, key, value)
|
||||
|
||||
self.logger.info(f"=== 虚拟工作台 {self.device_id} 已创建 ===")
|
||||
self.logger.info(
|
||||
f"机械臂操作时间: {self.ARM_OPERATION_TIME}s | "
|
||||
f"加热时间: {self.HEATING_TIME}s | "
|
||||
f"加热台数量: {self.NUM_HEATING_STATIONS}"
|
||||
)
|
||||
|
||||
@not_action
|
||||
def post_init(self, ros_node: BaseROS2DeviceNode):
|
||||
"""ROS节点初始化后回调"""
|
||||
self._ros_node = ros_node
|
||||
|
||||
@not_action
|
||||
def initialize(self) -> bool:
|
||||
"""初始化虚拟工作台"""
|
||||
self.logger.info(f"初始化虚拟工作台 {self.device_id}")
|
||||
|
||||
# 重置加热台状态 (已在__init__中创建,这里重置为初始状态)
|
||||
with self._stations_lock:
|
||||
for station in self._heating_stations.values():
|
||||
station.state = HeatingStationState.IDLE
|
||||
station.current_material = None
|
||||
station.material_number = None
|
||||
station.heating_progress = 0.0
|
||||
|
||||
# 初始化状态
|
||||
self.data.update(
|
||||
{
|
||||
"status": "Ready",
|
||||
"arm_state": ArmState.IDLE.value,
|
||||
"arm_current_task": None,
|
||||
"heating_stations": self._get_stations_status(),
|
||||
"active_tasks_count": 0,
|
||||
"message": "工作台就绪",
|
||||
}
|
||||
)
|
||||
|
||||
self.logger.info(f"工作台初始化完成: {self.NUM_HEATING_STATIONS}个加热台就绪")
|
||||
return True
|
||||
|
||||
@not_action
|
||||
def cleanup(self) -> bool:
|
||||
"""清理虚拟工作台"""
|
||||
self.logger.info(f"清理虚拟工作台 {self.device_id}")
|
||||
|
||||
self._arm_state = ArmState.IDLE
|
||||
self._arm_current_task = None
|
||||
|
||||
with self._stations_lock:
|
||||
self._heating_stations.clear()
|
||||
|
||||
with self._tasks_lock:
|
||||
self._active_tasks.clear()
|
||||
|
||||
self.data.update(
|
||||
{
|
||||
"status": "Offline",
|
||||
"arm_state": ArmState.IDLE.value,
|
||||
"heating_stations": {},
|
||||
"message": "工作台已关闭",
|
||||
}
|
||||
)
|
||||
return True
|
||||
|
||||
def _get_stations_status(self) -> Dict[int, Dict[str, Any]]:
|
||||
"""获取所有加热台状态"""
|
||||
with self._stations_lock:
|
||||
return {
|
||||
station_id: {
|
||||
"state": station.state.value,
|
||||
"current_material": station.current_material,
|
||||
"material_number": station.material_number,
|
||||
"heating_progress": station.heating_progress,
|
||||
}
|
||||
for station_id, station in self._heating_stations.items()
|
||||
}
|
||||
|
||||
def _update_data_status(self, message: Optional[str] = None):
|
||||
"""更新状态数据"""
|
||||
self.data.update(
|
||||
{
|
||||
"arm_state": self._arm_state.value,
|
||||
"arm_current_task": self._arm_current_task,
|
||||
"heating_stations": self._get_stations_status(),
|
||||
"active_tasks_count": len(self._active_tasks),
|
||||
}
|
||||
)
|
||||
if message:
|
||||
self.data["message"] = message
|
||||
|
||||
def _find_available_heating_station(self) -> Optional[int]:
|
||||
"""查找空闲的加热台
|
||||
|
||||
Returns:
|
||||
空闲加热台ID,如果没有则返回None
|
||||
"""
|
||||
with self._stations_lock:
|
||||
for station_id, station in self._heating_stations.items():
|
||||
if station.state == HeatingStationState.IDLE:
|
||||
return station_id
|
||||
return None
|
||||
|
||||
def _acquire_arm(self, task_description: str) -> bool:
|
||||
"""获取机械臂使用权(阻塞直到获取)
|
||||
|
||||
Args:
|
||||
task_description: 任务描述,用于日志
|
||||
|
||||
Returns:
|
||||
是否成功获取
|
||||
"""
|
||||
self.logger.info(f"[{task_description}] 等待获取机械臂...")
|
||||
|
||||
# 阻塞等待获取锁
|
||||
self._arm_lock.acquire()
|
||||
|
||||
self._arm_state = ArmState.BUSY
|
||||
self._arm_current_task = task_description
|
||||
self._update_data_status(f"机械臂执行: {task_description}")
|
||||
|
||||
self.logger.info(f"[{task_description}] 成功获取机械臂使用权")
|
||||
return True
|
||||
|
||||
def _release_arm(self):
|
||||
"""释放机械臂"""
|
||||
task = self._arm_current_task
|
||||
self._arm_state = ArmState.IDLE
|
||||
self._arm_current_task = None
|
||||
self._arm_lock.release()
|
||||
self._update_data_status(f"机械臂已释放 (完成: {task})")
|
||||
self.logger.info(f"机械臂已释放 (完成: {task})")
|
||||
|
||||
def prepare_materials(
|
||||
self,
|
||||
sample_uuids: SampleUUIDsType,
|
||||
count: int = 5,
|
||||
) -> PrepareMaterialsResult:
|
||||
"""
|
||||
批量准备物料 - 虚拟起始节点
|
||||
|
||||
作为工作流的起始节点,生成指定数量的物料编号供后续节点使用。
|
||||
输出5个handle (material_1 ~ material_5),分别对应实验1~5。
|
||||
|
||||
Args:
|
||||
count: 待生成的物料数量,默认5 (生成 A1-A5)
|
||||
|
||||
Returns:
|
||||
PrepareMaterialsResult: 包含 material_1 ~ material_5 用于传递给 move_to_heating_station
|
||||
"""
|
||||
# 生成物料列表 A1 - A{count}
|
||||
materials = [i for i in range(1, count + 1)]
|
||||
|
||||
self.logger.info(f"[准备物料] 生成 {count} 个物料: " f"A1-A{count} -> material_1~material_{count}")
|
||||
|
||||
return {
|
||||
"success": True,
|
||||
"count": count,
|
||||
"material_1": materials[0] if len(materials) > 0 else 0,
|
||||
"material_2": materials[1] if len(materials) > 1 else 0,
|
||||
"material_3": materials[2] if len(materials) > 2 else 0,
|
||||
"material_4": materials[3] if len(materials) > 3 else 0,
|
||||
"material_5": materials[4] if len(materials) > 4 else 0,
|
||||
"message": f"已准备 {count} 个物料: A1-A{count}",
|
||||
"unilabos_samples": [LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
def move_to_heating_station(
|
||||
self,
|
||||
sample_uuids: SampleUUIDsType,
|
||||
material_number: int,
|
||||
) -> MoveToHeatingStationResult:
|
||||
"""
|
||||
将物料从An位置移动到加热台
|
||||
|
||||
多线程并发调用时,会竞争机械臂使用权,并自动查找空闲加热台
|
||||
|
||||
Args:
|
||||
material_number: 物料编号 (1-5)
|
||||
|
||||
Returns:
|
||||
MoveToHeatingStationResult: 包含 station_id, material_number 等用于传递给下一个节点
|
||||
"""
|
||||
# 根据物料编号生成物料ID
|
||||
material_id = f"A{material_number}"
|
||||
task_desc = f"移动{material_id}到加热台"
|
||||
self.logger.info(f"[任务] {task_desc} - 开始执行")
|
||||
|
||||
# 记录任务
|
||||
with self._tasks_lock:
|
||||
self._active_tasks[material_id] = {
|
||||
"status": "waiting_for_arm",
|
||||
"start_time": time.time(),
|
||||
}
|
||||
|
||||
try:
|
||||
# 步骤1: 等待获取机械臂使用权(竞争)
|
||||
with self._tasks_lock:
|
||||
self._active_tasks[material_id]["status"] = "waiting_for_arm"
|
||||
self._acquire_arm(task_desc)
|
||||
|
||||
# 步骤2: 查找空闲加热台
|
||||
with self._tasks_lock:
|
||||
self._active_tasks[material_id]["status"] = "finding_station"
|
||||
station_id = None
|
||||
|
||||
# 循环等待直到找到空闲加热台
|
||||
while station_id is None:
|
||||
station_id = self._find_available_heating_station()
|
||||
if station_id is None:
|
||||
self.logger.info(f"[{material_id}] 没有空闲加热台,等待中...")
|
||||
# 释放机械臂,等待后重试
|
||||
self._release_arm()
|
||||
time.sleep(0.5)
|
||||
self._acquire_arm(task_desc)
|
||||
|
||||
# 步骤3: 占用加热台 - 立即标记为OCCUPIED,防止其他任务选择同一加热台
|
||||
with self._stations_lock:
|
||||
self._heating_stations[station_id].state = HeatingStationState.OCCUPIED
|
||||
self._heating_stations[station_id].current_material = material_id
|
||||
self._heating_stations[station_id].material_number = material_number
|
||||
|
||||
# 步骤4: 模拟机械臂移动操作 (3秒)
|
||||
with self._tasks_lock:
|
||||
self._active_tasks[material_id]["status"] = "arm_moving"
|
||||
self._active_tasks[material_id]["assigned_station"] = station_id
|
||||
self.logger.info(f"[{material_id}] 机械臂正在移动到加热台{station_id}...")
|
||||
|
||||
time.sleep(self.ARM_OPERATION_TIME)
|
||||
|
||||
# 步骤5: 放入加热台完成
|
||||
self._update_data_status(f"{material_id}已放入加热台{station_id}")
|
||||
self.logger.info(f"[{material_id}] 已放入加热台{station_id} (用时{self.ARM_OPERATION_TIME}s)")
|
||||
|
||||
# 释放机械臂
|
||||
self._release_arm()
|
||||
|
||||
with self._tasks_lock:
|
||||
self._active_tasks[material_id]["status"] = "placed_on_station"
|
||||
|
||||
return {
|
||||
"success": True,
|
||||
"station_id": station_id,
|
||||
"material_id": material_id,
|
||||
"material_number": material_number,
|
||||
"message": f"{material_id}已成功移动到加热台{station_id}",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
except Exception as e:
|
||||
self.logger.error(f"[{material_id}] 移动失败: {str(e)}")
|
||||
if self._arm_lock.locked():
|
||||
self._release_arm()
|
||||
return {
|
||||
"success": False,
|
||||
"station_id": -1,
|
||||
"material_id": material_id,
|
||||
"material_number": material_number,
|
||||
"message": f"移动失败: {str(e)}",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
def start_heating(
|
||||
self,
|
||||
sample_uuids: SampleUUIDsType,
|
||||
station_id: int,
|
||||
material_number: int,
|
||||
) -> StartHeatingResult:
|
||||
"""
|
||||
启动指定加热台的加热程序
|
||||
|
||||
Args:
|
||||
station_id: 加热台ID (1-3),从 move_to_heating_station 的 handle 传入
|
||||
material_number: 物料编号,从 move_to_heating_station 的 handle 传入
|
||||
|
||||
Returns:
|
||||
StartHeatingResult: 包含 station_id, material_number 等用于传递给下一个节点
|
||||
"""
|
||||
self.logger.info(f"[加热台{station_id}] 开始加热")
|
||||
|
||||
if station_id not in self._heating_stations:
|
||||
return {
|
||||
"success": False,
|
||||
"station_id": station_id,
|
||||
"material_id": "",
|
||||
"material_number": material_number,
|
||||
"message": f"无效的加热台ID: {station_id}",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations[station_id]
|
||||
|
||||
if station.current_material is None:
|
||||
return {
|
||||
"success": False,
|
||||
"station_id": station_id,
|
||||
"material_id": "",
|
||||
"material_number": material_number,
|
||||
"message": f"加热台{station_id}上没有物料",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
if station.state == HeatingStationState.HEATING:
|
||||
return {
|
||||
"success": False,
|
||||
"station_id": station_id,
|
||||
"material_id": station.current_material,
|
||||
"material_number": material_number,
|
||||
"message": f"加热台{station_id}已经在加热中",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
material_id = station.current_material
|
||||
|
||||
# 开始加热
|
||||
station.state = HeatingStationState.HEATING
|
||||
station.heating_start_time = time.time()
|
||||
station.heating_progress = 0.0
|
||||
|
||||
with self._tasks_lock:
|
||||
if material_id in self._active_tasks:
|
||||
self._active_tasks[material_id]["status"] = "heating"
|
||||
|
||||
self._update_data_status(f"加热台{station_id}开始加热{material_id}")
|
||||
|
||||
# 模拟加热过程 (10秒)
|
||||
start_time = time.time()
|
||||
while True:
|
||||
elapsed = time.time() - start_time
|
||||
progress = min(100.0, (elapsed / self.HEATING_TIME) * 100)
|
||||
|
||||
with self._stations_lock:
|
||||
self._heating_stations[station_id].heating_progress = progress
|
||||
|
||||
self._update_data_status(f"加热台{station_id}加热中: {progress:.1f}%")
|
||||
|
||||
if elapsed >= self.HEATING_TIME:
|
||||
break
|
||||
|
||||
time.sleep(1.0)
|
||||
|
||||
# 加热完成
|
||||
with self._stations_lock:
|
||||
self._heating_stations[station_id].state = HeatingStationState.COMPLETED
|
||||
self._heating_stations[station_id].heating_progress = 100.0
|
||||
|
||||
with self._tasks_lock:
|
||||
if material_id in self._active_tasks:
|
||||
self._active_tasks[material_id]["status"] = "heating_completed"
|
||||
|
||||
self._update_data_status(f"加热台{station_id}加热完成")
|
||||
self.logger.info(f"[加热台{station_id}] {material_id}加热完成 (用时{self.HEATING_TIME}s)")
|
||||
|
||||
return {
|
||||
"success": True,
|
||||
"station_id": station_id,
|
||||
"material_id": material_id,
|
||||
"material_number": material_number,
|
||||
"message": f"加热台{station_id}加热完成",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
def move_to_output(
|
||||
self,
|
||||
sample_uuids: SampleUUIDsType,
|
||||
station_id: int,
|
||||
material_number: int,
|
||||
) -> MoveToOutputResult:
|
||||
"""
|
||||
将物料从加热台移动到输出位置Cn
|
||||
|
||||
Args:
|
||||
station_id: 加热台ID (1-3),从 start_heating 的 handle 传入
|
||||
material_number: 物料编号,从 start_heating 的 handle 传入,用于确定输出位置 Cn
|
||||
|
||||
Returns:
|
||||
MoveToOutputResult: 包含执行结果
|
||||
"""
|
||||
output_number = material_number # 物料编号决定输出位置
|
||||
|
||||
if station_id not in self._heating_stations:
|
||||
return {
|
||||
"success": False,
|
||||
"station_id": station_id,
|
||||
"material_id": "",
|
||||
"output_position": f"C{output_number}",
|
||||
"message": f"无效的加热台ID: {station_id}",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations[station_id]
|
||||
material_id = station.current_material
|
||||
|
||||
if material_id is None:
|
||||
return {
|
||||
"success": False,
|
||||
"station_id": station_id,
|
||||
"material_id": "",
|
||||
"output_position": f"C{output_number}",
|
||||
"message": f"加热台{station_id}上没有物料",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
if station.state != HeatingStationState.COMPLETED:
|
||||
return {
|
||||
"success": False,
|
||||
"station_id": station_id,
|
||||
"material_id": material_id,
|
||||
"output_position": f"C{output_number}",
|
||||
"message": f"加热台{station_id}尚未完成加热 (当前状态: {station.state.value})",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
output_position = f"C{output_number}"
|
||||
task_desc = f"从加热台{station_id}移动{material_id}到{output_position}"
|
||||
self.logger.info(f"[任务] {task_desc}")
|
||||
|
||||
try:
|
||||
with self._tasks_lock:
|
||||
if material_id in self._active_tasks:
|
||||
self._active_tasks[material_id]["status"] = "waiting_for_arm_output"
|
||||
|
||||
# 获取机械臂
|
||||
self._acquire_arm(task_desc)
|
||||
|
||||
with self._tasks_lock:
|
||||
if material_id in self._active_tasks:
|
||||
self._active_tasks[material_id]["status"] = "arm_moving_to_output"
|
||||
|
||||
# 模拟机械臂操作 (3秒)
|
||||
self.logger.info(f"[{material_id}] 机械臂正在从加热台{station_id}取出并移动到{output_position}...")
|
||||
time.sleep(self.ARM_OPERATION_TIME)
|
||||
|
||||
# 清空加热台
|
||||
with self._stations_lock:
|
||||
self._heating_stations[station_id].state = HeatingStationState.IDLE
|
||||
self._heating_stations[station_id].current_material = None
|
||||
self._heating_stations[station_id].material_number = None
|
||||
self._heating_stations[station_id].heating_progress = 0.0
|
||||
self._heating_stations[station_id].heating_start_time = None
|
||||
|
||||
# 释放机械臂
|
||||
self._release_arm()
|
||||
|
||||
# 任务完成
|
||||
with self._tasks_lock:
|
||||
if material_id in self._active_tasks:
|
||||
self._active_tasks[material_id]["status"] = "completed"
|
||||
self._active_tasks[material_id]["end_time"] = time.time()
|
||||
|
||||
self._update_data_status(f"{material_id}已移动到{output_position}")
|
||||
self.logger.info(f"[{material_id}] 已成功移动到{output_position} (用时{self.ARM_OPERATION_TIME}s)")
|
||||
|
||||
return {
|
||||
"success": True,
|
||||
"station_id": station_id,
|
||||
"material_id": material_id,
|
||||
"output_position": output_position,
|
||||
"message": f"{material_id}已成功移动到{output_position}",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
except Exception as e:
|
||||
self.logger.error(f"移动到输出位置失败: {str(e)}")
|
||||
if self._arm_lock.locked():
|
||||
self._release_arm()
|
||||
return {
|
||||
"success": False,
|
||||
"station_id": station_id,
|
||||
"material_id": "",
|
||||
"output_position": output_position,
|
||||
"message": f"移动失败: {str(e)}",
|
||||
"unilabos_samples": [
|
||||
LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for
|
||||
sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
# ============ 状态属性 ============
|
||||
|
||||
@property
|
||||
def status(self) -> str:
|
||||
return self.data.get("status", "Unknown")
|
||||
|
||||
@property
|
||||
def arm_state(self) -> str:
|
||||
return self._arm_state.value
|
||||
|
||||
@property
|
||||
def arm_current_task(self) -> str:
|
||||
return self._arm_current_task or ""
|
||||
|
||||
@property
|
||||
def heating_station_1_state(self) -> str:
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations.get(1)
|
||||
return station.state.value if station else "unknown"
|
||||
|
||||
@property
|
||||
def heating_station_1_material(self) -> str:
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations.get(1)
|
||||
return station.current_material or "" if station else ""
|
||||
|
||||
@property
|
||||
def heating_station_1_progress(self) -> float:
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations.get(1)
|
||||
return station.heating_progress if station else 0.0
|
||||
|
||||
@property
|
||||
def heating_station_2_state(self) -> str:
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations.get(2)
|
||||
return station.state.value if station else "unknown"
|
||||
|
||||
@property
|
||||
def heating_station_2_material(self) -> str:
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations.get(2)
|
||||
return station.current_material or "" if station else ""
|
||||
|
||||
@property
|
||||
def heating_station_2_progress(self) -> float:
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations.get(2)
|
||||
return station.heating_progress if station else 0.0
|
||||
|
||||
@property
|
||||
def heating_station_3_state(self) -> str:
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations.get(3)
|
||||
return station.state.value if station else "unknown"
|
||||
|
||||
@property
|
||||
def heating_station_3_material(self) -> str:
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations.get(3)
|
||||
return station.current_material or "" if station else ""
|
||||
|
||||
@property
|
||||
def heating_station_3_progress(self) -> float:
|
||||
with self._stations_lock:
|
||||
station = self._heating_stations.get(3)
|
||||
return station.heating_progress if station else 0.0
|
||||
|
||||
@property
|
||||
def active_tasks_count(self) -> int:
|
||||
with self._tasks_lock:
|
||||
return len(self._active_tasks)
|
||||
|
||||
@property
|
||||
def message(self) -> str:
|
||||
return self.data.get("message", "")
|
||||
@@ -9,7 +9,7 @@ from datetime import datetime, timezone
|
||||
from unilabos.device_comms.rpc import BaseRequest
|
||||
from typing import Optional, List, Dict, Any
|
||||
import json
|
||||
from unilabos.devices.workstation.bioyond_studio.config import LOCATION_MAPPING
|
||||
|
||||
|
||||
|
||||
class SimpleLogger:
|
||||
@@ -49,6 +49,14 @@ class BioyondV1RPC(BaseRequest):
|
||||
self.config = config
|
||||
self.api_key = config["api_key"]
|
||||
self.host = config["api_host"]
|
||||
|
||||
# 初始化 location_mapping
|
||||
# 直接从 warehouse_mapping 构建,确保数据源所谓的单一和结构化
|
||||
self.location_mapping = {}
|
||||
warehouse_mapping = self.config.get("warehouse_mapping", {})
|
||||
for warehouse_name, warehouse_config in warehouse_mapping.items():
|
||||
if "site_uuids" in warehouse_config:
|
||||
self.location_mapping.update(warehouse_config["site_uuids"])
|
||||
self._logger = SimpleLogger()
|
||||
self.material_cache = {}
|
||||
self._load_material_cache()
|
||||
@@ -176,7 +184,40 @@ class BioyondV1RPC(BaseRequest):
|
||||
return {}
|
||||
|
||||
print(f"add material data: {response['data']}")
|
||||
return response.get("data", {})
|
||||
|
||||
# 自动更新缓存
|
||||
data = response.get("data", {})
|
||||
if data:
|
||||
if isinstance(data, str):
|
||||
# 如果返回的是字符串,通常是ID
|
||||
mat_id = data
|
||||
name = params.get("name")
|
||||
else:
|
||||
# 如果返回的是字典,尝试获取name和id
|
||||
name = data.get("name") or params.get("name")
|
||||
mat_id = data.get("id")
|
||||
|
||||
if name and mat_id:
|
||||
self.material_cache[name] = mat_id
|
||||
print(f"已自动更新缓存: {name} -> {mat_id}")
|
||||
|
||||
# 处理返回数据中的 details (如果有)
|
||||
# 有些 API 返回结构可能直接包含 details,或者在 data 字段中
|
||||
details = data.get("details", []) if isinstance(data, dict) else []
|
||||
if not details and isinstance(data, dict):
|
||||
details = data.get("detail", [])
|
||||
|
||||
if details:
|
||||
for detail in details:
|
||||
d_name = detail.get("name")
|
||||
# 尝试从不同字段获取 ID
|
||||
d_id = detail.get("id") or detail.get("detailMaterialId")
|
||||
|
||||
if d_name and d_id:
|
||||
self.material_cache[d_name] = d_id
|
||||
print(f"已自动更新 detail 缓存: {d_name} -> {d_id}")
|
||||
|
||||
return data
|
||||
|
||||
def query_matial_type_id(self, data) -> list:
|
||||
"""查找物料typeid"""
|
||||
@@ -203,7 +244,7 @@ class BioyondV1RPC(BaseRequest):
|
||||
params={
|
||||
"apiKey": self.api_key,
|
||||
"requestTime": self.get_current_time_iso8601(),
|
||||
"data": {},
|
||||
"data": 0,
|
||||
})
|
||||
if not response or response['code'] != 1:
|
||||
return []
|
||||
@@ -273,11 +314,19 @@ class BioyondV1RPC(BaseRequest):
|
||||
|
||||
if not response or response['code'] != 1:
|
||||
return {}
|
||||
|
||||
# 自动更新缓存 - 移除被删除的物料
|
||||
for name, mid in list(self.material_cache.items()):
|
||||
if mid == material_id:
|
||||
del self.material_cache[name]
|
||||
print(f"已从缓存移除物料: {name}")
|
||||
break
|
||||
|
||||
return response.get("data", {})
|
||||
|
||||
def material_outbound(self, material_id: str, location_name: str, quantity: int) -> dict:
|
||||
"""指定库位出库物料(通过库位名称)"""
|
||||
location_id = LOCATION_MAPPING.get(location_name, location_name)
|
||||
location_id = self.location_mapping.get(location_name, location_name)
|
||||
|
||||
params = {
|
||||
"materialId": material_id,
|
||||
@@ -1103,6 +1152,10 @@ class BioyondV1RPC(BaseRequest):
|
||||
for detail_material in detail_materials:
|
||||
detail_name = detail_material.get("name")
|
||||
detail_id = detail_material.get("detailMaterialId")
|
||||
if not detail_id:
|
||||
# 尝试其他可能的字段
|
||||
detail_id = detail_material.get("id")
|
||||
|
||||
if detail_name and detail_id:
|
||||
self.material_cache[detail_name] = detail_id
|
||||
print(f"加载detail材料: {detail_name} -> ID: {detail_id}")
|
||||
@@ -1123,6 +1176,14 @@ class BioyondV1RPC(BaseRequest):
|
||||
print(f"从缓存找到材料: {material_name_or_id} -> ID: {material_id}")
|
||||
return material_id
|
||||
|
||||
# 如果缓存中没有,尝试刷新缓存
|
||||
print(f"缓存中未找到材料 '{material_name_or_id}',尝试刷新缓存...")
|
||||
self.refresh_material_cache()
|
||||
if material_name_or_id in self.material_cache:
|
||||
material_id = self.material_cache[material_name_or_id]
|
||||
print(f"刷新缓存后找到材料: {material_name_or_id} -> ID: {material_id}")
|
||||
return material_id
|
||||
|
||||
print(f"警告: 未在缓存中找到材料名称 '{material_name_or_id}',将使用原值")
|
||||
return material_name_or_id
|
||||
|
||||
|
||||
@@ -1,142 +0,0 @@
|
||||
# config.py
|
||||
"""
|
||||
配置文件 - 包含所有配置信息和映射关系
|
||||
"""
|
||||
|
||||
# API配置
|
||||
API_CONFIG = {
|
||||
"api_key": "",
|
||||
"api_host": ""
|
||||
}
|
||||
|
||||
# 工作流映射配置
|
||||
WORKFLOW_MAPPINGS = {
|
||||
"reactor_taken_out": "",
|
||||
"reactor_taken_in": "",
|
||||
"Solid_feeding_vials": "",
|
||||
"Liquid_feeding_vials(non-titration)": "",
|
||||
"Liquid_feeding_solvents": "",
|
||||
"Liquid_feeding(titration)": "",
|
||||
"liquid_feeding_beaker": "",
|
||||
"Drip_back": "",
|
||||
}
|
||||
|
||||
# 工作流名称到DisplaySectionName的映射
|
||||
WORKFLOW_TO_SECTION_MAP = {
|
||||
'reactor_taken_in': '反应器放入',
|
||||
'liquid_feeding_beaker': '液体投料-烧杯',
|
||||
'Liquid_feeding_vials(non-titration)': '液体投料-小瓶(非滴定)',
|
||||
'Liquid_feeding_solvents': '液体投料-溶剂',
|
||||
'Solid_feeding_vials': '固体投料-小瓶',
|
||||
'Liquid_feeding(titration)': '液体投料-滴定',
|
||||
'reactor_taken_out': '反应器取出'
|
||||
}
|
||||
|
||||
# 库位映射配置
|
||||
WAREHOUSE_MAPPING = {
|
||||
"粉末堆栈": {
|
||||
"uuid": "",
|
||||
"site_uuids": {
|
||||
# 样品板
|
||||
"A1": "3a14198e-6929-31f0-8a22-0f98f72260df",
|
||||
"A2": "3a14198e-6929-4379-affa-9a2935c17f99",
|
||||
"A3": "3a14198e-6929-56da-9a1c-7f5fbd4ae8af",
|
||||
"A4": "3a14198e-6929-5e99-2b79-80720f7cfb54",
|
||||
"B1": "3a14198e-6929-f525-9a1b-1857552b28ee",
|
||||
"B2": "3a14198e-6929-bf98-0fd5-26e1d68bf62d",
|
||||
"B3": "3a14198e-6929-2d86-a468-602175a2b5aa",
|
||||
"B4": "3a14198e-6929-1a98-ae57-e97660c489ad",
|
||||
# 分装板
|
||||
"C1": "3a14198e-6929-46fe-841e-03dd753f1e4a",
|
||||
"C2": "3a14198e-6929-1bc9-a9bd-3b7ca66e7f95",
|
||||
"C3": "3a14198e-6929-72ac-32ce-9b50245682b8",
|
||||
"C4": "3a14198e-6929-3bd8-e6c7-4a9fd93be118",
|
||||
"D1": "3a14198e-6929-8a0b-b686-6f4a2955c4e2",
|
||||
"D2": "3a14198e-6929-dde1-fc78-34a84b71afdf",
|
||||
"D3": "3a14198e-6929-a0ec-5f15-c0f9f339f963",
|
||||
"D4": "3a14198e-6929-7ac8-915a-fea51cb2e884"
|
||||
}
|
||||
},
|
||||
"溶液堆栈": {
|
||||
"uuid": "",
|
||||
"site_uuids": {
|
||||
"A1": "3a14198e-d724-e036-afdc-2ae39a7f3383",
|
||||
"A2": "3a14198e-d724-afa4-fc82-0ac8a9016791",
|
||||
"A3": "3a14198e-d724-ca48-bb9e-7e85751e55b6",
|
||||
"A4": "3a14198e-d724-df6d-5e32-5483b3cab583",
|
||||
"B1": "3a14198e-d724-d818-6d4f-5725191a24b5",
|
||||
"B2": "3a14198e-d724-be8a-5e0b-012675e195c6",
|
||||
"B3": "3a14198e-d724-cc1e-5c2c-228a130f40a8",
|
||||
"B4": "3a14198e-d724-1e28-c885-574c3df468d0",
|
||||
"C1": "3a14198e-d724-b5bb-adf3-4c5a0da6fb31",
|
||||
"C2": "3a14198e-d724-ab4e-48cb-817c3c146707",
|
||||
"C3": "3a14198e-d724-7f18-1853-39d0c62e1d33",
|
||||
"C4": "3a14198e-d724-28a2-a760-baa896f46b66",
|
||||
"D1": "3a14198e-d724-d378-d266-2508a224a19f",
|
||||
"D2": "3a14198e-d724-f56e-468b-0110a8feb36a",
|
||||
"D3": "3a14198e-d724-0cf1-dea9-a1f40fe7e13c",
|
||||
"D4": "3a14198e-d724-0ddd-9654-f9352a421de9"
|
||||
}
|
||||
},
|
||||
"试剂堆栈": {
|
||||
"uuid": "",
|
||||
"site_uuids": {
|
||||
"A1": "3a14198c-c2cf-8b40-af28-b467808f1c36",
|
||||
"A2": "3a14198c-c2d0-f3e7-871a-e470d144296f",
|
||||
"A3": "3a14198c-c2d0-dc7d-b8d0-e1d88cee3094",
|
||||
"A4": "3a14198c-c2d0-2070-efc8-44e245f10c6f",
|
||||
"B1": "3a14198c-c2d0-354f-39ad-642e1a72fcb8",
|
||||
"B2": "3a14198c-c2d0-1559-105d-0ea30682cab4",
|
||||
"B3": "3a14198c-c2d0-725e-523d-34c037ac2440",
|
||||
"B4": "3a14198c-c2d0-efce-0939-69ca5a7dfd39"
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
# 物料类型配置
|
||||
MATERIAL_TYPE_MAPPINGS = {
|
||||
"烧杯": ("BIOYOND_PolymerStation_1FlaskCarrier", "3a14196b-24f2-ca49-9081-0cab8021bf1a"),
|
||||
"试剂瓶": ("BIOYOND_PolymerStation_1BottleCarrier", ""),
|
||||
"样品板": ("BIOYOND_PolymerStation_6StockCarrier", "3a14196e-b7a0-a5da-1931-35f3000281e9"),
|
||||
"分装板": ("BIOYOND_PolymerStation_6VialCarrier", "3a14196e-5dfe-6e21-0c79-fe2036d052c4"),
|
||||
"样品瓶": ("BIOYOND_PolymerStation_Solid_Stock", "3a14196a-cf7d-8aea-48d8-b9662c7dba94"),
|
||||
"90%分装小瓶": ("BIOYOND_PolymerStation_Solid_Vial", "3a14196c-cdcf-088d-dc7d-5cf38f0ad9ea"),
|
||||
"10%分装小瓶": ("BIOYOND_PolymerStation_Liquid_Vial", "3a14196c-76be-2279-4e22-7310d69aed68"),
|
||||
}
|
||||
|
||||
# 步骤参数配置(各工作流的步骤UUID)
|
||||
WORKFLOW_STEP_IDS = {
|
||||
"reactor_taken_in": {
|
||||
"config": ""
|
||||
},
|
||||
"liquid_feeding_beaker": {
|
||||
"liquid": "",
|
||||
"observe": ""
|
||||
},
|
||||
"liquid_feeding_vials_non_titration": {
|
||||
"liquid": "",
|
||||
"observe": ""
|
||||
},
|
||||
"liquid_feeding_solvents": {
|
||||
"liquid": "",
|
||||
"observe": ""
|
||||
},
|
||||
"solid_feeding_vials": {
|
||||
"feeding": "",
|
||||
"observe": ""
|
||||
},
|
||||
"liquid_feeding_titration": {
|
||||
"liquid": "",
|
||||
"observe": ""
|
||||
},
|
||||
"drip_back": {
|
||||
"liquid": "",
|
||||
"observe": ""
|
||||
}
|
||||
}
|
||||
|
||||
LOCATION_MAPPING = {}
|
||||
|
||||
ACTION_NAMES = {}
|
||||
|
||||
HTTP_SERVICE_CONFIG = {}
|
||||
329
unilabos/devices/workstation/bioyond_studio/config.py.deprecated
Normal file
329
unilabos/devices/workstation/bioyond_studio/config.py.deprecated
Normal file
@@ -0,0 +1,329 @@
|
||||
# config.py
|
||||
"""
|
||||
Bioyond工作站配置文件
|
||||
包含API配置、工作流映射、物料类型映射、仓库库位映射等所有配置信息
|
||||
"""
|
||||
|
||||
from unilabos.resources.bioyond.decks import BIOYOND_PolymerReactionStation_Deck
|
||||
|
||||
# ============================================================================
|
||||
# 基础配置
|
||||
# ============================================================================
|
||||
|
||||
# API配置
|
||||
API_CONFIG = {
|
||||
"api_key": "DE9BDDA0",
|
||||
"api_host": "http://192.168.1.200:44402"
|
||||
}
|
||||
|
||||
# HTTP 报送服务配置
|
||||
HTTP_SERVICE_CONFIG = {
|
||||
"http_service_host": "127.0.0.1", # 监听地址
|
||||
"http_service_port": 8080, # 监听端口
|
||||
}
|
||||
|
||||
# Deck配置 - 反应站工作台配置
|
||||
DECK_CONFIG = BIOYOND_PolymerReactionStation_Deck(setup=True)
|
||||
|
||||
# ============================================================================
|
||||
# 工作流配置
|
||||
# ============================================================================
|
||||
|
||||
# 工作流ID映射
|
||||
WORKFLOW_MAPPINGS = {
|
||||
"reactor_taken_out": "3a16081e-4788-ca37-eff4-ceed8d7019d1",
|
||||
"reactor_taken_in": "3a160df6-76b3-0957-9eb0-cb496d5721c6",
|
||||
"Solid_feeding_vials": "3a160877-87e7-7699-7bc6-ec72b05eb5e6",
|
||||
"Liquid_feeding_vials(non-titration)": "3a167d99-6158-c6f0-15b5-eb030f7d8e47",
|
||||
"Liquid_feeding_solvents": "3a160824-0665-01ed-285a-51ef817a9046",
|
||||
"Liquid_feeding(titration)": "3a16082a-96ac-0449-446a-4ed39f3365b6",
|
||||
"liquid_feeding_beaker": "3a16087e-124f-8ddb-8ec1-c2dff09ca784",
|
||||
"Drip_back": "3a162cf9-6aac-565a-ddd7-682ba1796a4a",
|
||||
}
|
||||
|
||||
# 工作流名称到显示名称的映射
|
||||
WORKFLOW_TO_SECTION_MAP = {
|
||||
'reactor_taken_in': '反应器放入',
|
||||
'reactor_taken_out': '反应器取出',
|
||||
'Solid_feeding_vials': '固体投料-小瓶',
|
||||
'Liquid_feeding_vials(non-titration)': '液体投料-小瓶(非滴定)',
|
||||
'Liquid_feeding_solvents': '液体投料-溶剂',
|
||||
'Liquid_feeding(titration)': '液体投料-滴定',
|
||||
'liquid_feeding_beaker': '液体投料-烧杯',
|
||||
'Drip_back': '液体回滴'
|
||||
}
|
||||
|
||||
# 工作流步骤ID配置
|
||||
WORKFLOW_STEP_IDS = {
|
||||
"reactor_taken_in": {
|
||||
"config": "60a06f85-c5b3-29eb-180f-4f62dd7e2154"
|
||||
},
|
||||
"liquid_feeding_beaker": {
|
||||
"liquid": "6808cda7-fee7-4092-97f0-5f9c2ffa60e3",
|
||||
"observe": "1753c0de-dffc-4ee6-8458-805a2e227362"
|
||||
},
|
||||
"liquid_feeding_vials_non_titration": {
|
||||
"liquid": "62ea6e95-3d5d-43db-bc1e-9a1802673861",
|
||||
"observe": "3a167d99-6172-b67b-5f22-a7892197142e"
|
||||
},
|
||||
"liquid_feeding_solvents": {
|
||||
"liquid": "1fcea355-2545-462b-b727-350b69a313bf",
|
||||
"observe": "0553dfb3-9ac5-4ace-8e00-2f11029919a8"
|
||||
},
|
||||
"solid_feeding_vials": {
|
||||
"feeding": "f7ae7448-4f20-4c1d-8096-df6fbadd787a",
|
||||
"observe": "263c7ed5-7277-426b-bdff-d6fbf77bcc05"
|
||||
},
|
||||
"liquid_feeding_titration": {
|
||||
"liquid": "a00ec41b-e666-4422-9c20-bfcd3cd15c54",
|
||||
"observe": "ac738ff6-4c58-4155-87b1-d6f65a2c9ab5"
|
||||
},
|
||||
"drip_back": {
|
||||
"liquid": "371be86a-ab77-4769-83e5-54580547c48a",
|
||||
"observe": "ce024b9d-bd20-47b8-9f78-ca5ce7f44cf1"
|
||||
}
|
||||
}
|
||||
|
||||
# 工作流动作名称配置
|
||||
ACTION_NAMES = {
|
||||
"reactor_taken_in": {
|
||||
"config": "通量-配置",
|
||||
"stirring": "反应模块-开始搅拌"
|
||||
},
|
||||
"solid_feeding_vials": {
|
||||
"feeding": "粉末加样模块-投料",
|
||||
"observe": "反应模块-观察搅拌结果"
|
||||
},
|
||||
"liquid_feeding_vials_non_titration": {
|
||||
"liquid": "稀释液瓶加液位-液体投料",
|
||||
"observe": "反应模块-滴定结果观察"
|
||||
},
|
||||
"liquid_feeding_solvents": {
|
||||
"liquid": "试剂AB放置位-试剂吸液分液",
|
||||
"observe": "反应模块-观察搅拌结果"
|
||||
},
|
||||
"liquid_feeding_titration": {
|
||||
"liquid": "稀释液瓶加液位-稀释液吸液分液",
|
||||
"observe": "反应模块-滴定结果观察"
|
||||
},
|
||||
"liquid_feeding_beaker": {
|
||||
"liquid": "烧杯溶液放置位-烧杯吸液分液",
|
||||
"observe": "反应模块-观察搅拌结果"
|
||||
},
|
||||
"drip_back": {
|
||||
"liquid": "试剂AB放置位-试剂吸液分液",
|
||||
"observe": "反应模块-向下滴定结果观察"
|
||||
}
|
||||
}
|
||||
|
||||
# ============================================================================
|
||||
# 仓库配置
|
||||
# ============================================================================
|
||||
# 说明:
|
||||
# - 出库和入库操作都需要UUID
|
||||
WAREHOUSE_MAPPING = {
|
||||
# ========== 反应站仓库 ==========
|
||||
|
||||
# 堆栈1左 - 反应站左侧堆栈 (4行×4列=16个库位, A01~D04)
|
||||
"堆栈1左": {
|
||||
"uuid": "3a14aa17-0d49-dce4-486e-4b5c85c8b366",
|
||||
"site_uuids": {
|
||||
"A01": "3a14aa17-0d49-11d7-a6e1-f236b3e5e5a3",
|
||||
"A02": "3a14aa17-0d49-4bc5-8836-517b75473f5f",
|
||||
"A03": "3a14aa17-0d49-c2bc-6222-5cee8d2d94f8",
|
||||
"A04": "3a14aa17-0d49-3ce2-8e9a-008c38d116fb",
|
||||
"B01": "3a14aa17-0d49-f49c-6b66-b27f185a3b32",
|
||||
"B02": "3a14aa17-0d49-cf46-df85-a979c9c9920c",
|
||||
"B03": "3a14aa17-0d49-7698-4a23-f7ffb7d48ba3",
|
||||
"B04": "3a14aa17-0d49-1231-99be-d5870e6478e9",
|
||||
"C01": "3a14aa17-0d49-be34-6fae-4aed9d48b70b",
|
||||
"C02": "3a14aa17-0d49-11d7-0897-34921dcf6b7c",
|
||||
"C03": "3a14aa17-0d49-9840-0bd5-9c63c1bb2c29",
|
||||
"C04": "3a14aa17-0d49-8335-3bff-01da69ea4911",
|
||||
"D01": "3a14aa17-0d49-2bea-c8e5-2b32094935d5",
|
||||
"D02": "3a14aa17-0d49-cff4-e9e8-5f5f0bc1ef32",
|
||||
"D03": "3a14aa17-0d49-4948-cb0a-78f30d1ca9b8",
|
||||
"D04": "3a14aa17-0d49-fd2f-9dfb-a29b11e84099",
|
||||
},
|
||||
},
|
||||
|
||||
# 堆栈1右 - 反应站右侧堆栈 (4行×4列=16个库位, A05~D08)
|
||||
"堆栈1右": {
|
||||
"uuid": "3a14aa17-0d49-dce4-486e-4b5c85c8b366",
|
||||
"site_uuids": {
|
||||
"A05": "3a14aa17-0d49-2c61-edc8-72a8ca7192dd",
|
||||
"A06": "3a14aa17-0d49-60c8-2b00-40b17198f397",
|
||||
"A07": "3a14aa17-0d49-ec5b-0b75-634dce8eed25",
|
||||
"A08": "3a14aa17-0d49-3ec9-55b3-f3189c4ec53d",
|
||||
"B05": "3a14aa17-0d49-6a4e-abcf-4c113eaaeaad",
|
||||
"B06": "3a14aa17-0d49-e3f6-2dd6-28c2e8194fbe",
|
||||
"B07": "3a14aa17-0d49-11a6-b861-ee895121bf52",
|
||||
"B08": "3a14aa17-0d49-9c7d-1145-d554a6e482f0",
|
||||
"C05": "3a14aa17-0d49-45c4-7a34-5105bc3e2368",
|
||||
"C06": "3a14aa17-0d49-867e-39ab-31b3fe9014be",
|
||||
"C07": "3a14aa17-0d49-ec56-c4b4-39fd9b2131e7",
|
||||
"C08": "3a14aa17-0d49-1128-d7d9-ffb1231c98c0",
|
||||
"D05": "3a14aa17-0d49-e843-f961-ea173326a14b",
|
||||
"D06": "3a14aa17-0d49-4d26-a985-f188359c4f8b",
|
||||
"D07": "3a14aa17-0d49-223a-b520-bc092bb42fe0",
|
||||
"D08": "3a14aa17-0d49-4fa3-401a-6a444e1cca22",
|
||||
},
|
||||
},
|
||||
|
||||
# 站内试剂存放堆栈
|
||||
"站内试剂存放堆栈": {
|
||||
"uuid": "3a14aa3b-9fab-9d8e-d1a7-828f01f51f0c",
|
||||
"site_uuids": {
|
||||
"A01": "3a14aa3b-9fab-adac-7b9c-e1ee446b51d5",
|
||||
"A02": "3a14aa3b-9fab-ca72-febc-b7c304476c78"
|
||||
}
|
||||
},
|
||||
|
||||
|
||||
# 测量小瓶仓库(测密度)
|
||||
"测量小瓶仓库": {
|
||||
"uuid": "3a15012f-705b-c0de-3f9e-950c205f9921",
|
||||
"site_uuids": {
|
||||
"A01": "3a15012f-705e-0524-3161-c523b5aebc97",
|
||||
"A02": "3a15012f-705e-7cd1-32ab-ad4fd1ab75c8",
|
||||
"A03": "3a15012f-705e-a5d6-edac-bdbfec236260",
|
||||
"B01": "3a15012f-705e-e0ee-80e0-10a6b3fc500d",
|
||||
"B02": "3a15012f-705e-e499-180d-de06d60d0b21",
|
||||
"B03": "3a15012f-705e-eff6-63f1-09f742096b26"
|
||||
}
|
||||
},
|
||||
|
||||
# 站内Tip盒堆栈 - 用于存放枪头盒 (耗材)
|
||||
"站内Tip盒堆栈": {
|
||||
"uuid": "3a14aa3a-2d3c-b5c1-9ddf-7c4a957d459a",
|
||||
"site_uuids": {
|
||||
"A01": "3a14aa3a-2d3d-e700-411a-0ddf85e1f18a",
|
||||
"A02": "3a14aa3a-2d3d-a7ce-099a-d5632fdafa24",
|
||||
"A03": "3a14aa3a-2d3d-bdf6-a702-c60b38b08501",
|
||||
"B01": "3a14aa3a-2d3d-d704-f076-2a8d5bc72cb8",
|
||||
"B02": "3a14aa3a-2d3d-c350-2526-0778d173a5ac",
|
||||
"B03": "3a14aa3a-2d3d-bc38-b356-f0de2e44e0c7"
|
||||
}
|
||||
},
|
||||
# ========== 配液站仓库 ==========
|
||||
"粉末堆栈": {
|
||||
"uuid": "3a14198e-6928-121f-7ca6-88ad3ae7e6a0",
|
||||
"site_uuids": {
|
||||
"A01": "3a14198e-6929-31f0-8a22-0f98f72260df",
|
||||
"A02": "3a14198e-6929-4379-affa-9a2935c17f99",
|
||||
"A03": "3a14198e-6929-56da-9a1c-7f5fbd4ae8af",
|
||||
"A04": "3a14198e-6929-5e99-2b79-80720f7cfb54",
|
||||
"B01": "3a14198e-6929-f525-9a1b-1857552b28ee",
|
||||
"B02": "3a14198e-6929-bf98-0fd5-26e1d68bf62d",
|
||||
"B03": "3a14198e-6929-2d86-a468-602175a2b5aa",
|
||||
"B04": "3a14198e-6929-1a98-ae57-e97660c489ad",
|
||||
"C01": "3a14198e-6929-46fe-841e-03dd753f1e4a",
|
||||
"C02": "3a14198e-6929-72ac-32ce-9b50245682b8",
|
||||
"C03": "3a14198e-6929-8a0b-b686-6f4a2955c4e2",
|
||||
"C04": "3a14198e-6929-a0ec-5f15-c0f9f339f963",
|
||||
"D01": "3a14198e-6929-1bc9-a9bd-3b7ca66e7f95",
|
||||
"D02": "3a14198e-6929-3bd8-e6c7-4a9fd93be118",
|
||||
"D03": "3a14198e-6929-dde1-fc78-34a84b71afdf",
|
||||
"D04": "3a14198e-6929-7ac8-915a-fea51cb2e884"
|
||||
}
|
||||
},
|
||||
"溶液堆栈": {
|
||||
"uuid": "3a14198e-d723-2c13-7d12-50143e190a23",
|
||||
"site_uuids": {
|
||||
"A01": "3a14198e-d724-e036-afdc-2ae39a7f3383",
|
||||
"A02": "3a14198e-d724-d818-6d4f-5725191a24b5",
|
||||
"A03": "3a14198e-d724-b5bb-adf3-4c5a0da6fb31",
|
||||
"A04": "3a14198e-d724-d378-d266-2508a224a19f",
|
||||
"B01": "3a14198e-d724-afa4-fc82-0ac8a9016791",
|
||||
"B02": "3a14198e-d724-be8a-5e0b-012675e195c6",
|
||||
"B03": "3a14198e-d724-ab4e-48cb-817c3c146707",
|
||||
"B04": "3a14198e-d724-f56e-468b-0110a8feb36a",
|
||||
"C01": "3a14198e-d724-ca48-bb9e-7e85751e55b6",
|
||||
"C02": "3a14198e-d724-cc1e-5c2c-228a130f40a8",
|
||||
"C03": "3a14198e-d724-7f18-1853-39d0c62e1d33",
|
||||
"C04": "3a14198e-d724-0cf1-dea9-a1f40fe7e13c",
|
||||
"D01": "3a14198e-d724-df6d-5e32-5483b3cab583",
|
||||
"D02": "3a14198e-d724-1e28-c885-574c3df468d0",
|
||||
"D03": "3a14198e-d724-28a2-a760-baa896f46b66",
|
||||
"D04": "3a14198e-d724-0ddd-9654-f9352a421de9"
|
||||
}
|
||||
},
|
||||
"试剂堆栈": {
|
||||
"uuid": "3a14198c-c2cc-0290-e086-44a428fba248",
|
||||
"site_uuids": {
|
||||
"A01": "3a14198c-c2cf-8b40-af28-b467808f1c36", # x=1, y=1, code=0001-0001
|
||||
"A02": "3a14198c-c2d0-dc7d-b8d0-e1d88cee3094", # x=1, y=2, code=0001-0002
|
||||
"A03": "3a14198c-c2d0-354f-39ad-642e1a72fcb8", # x=1, y=3, code=0001-0003
|
||||
"A04": "3a14198c-c2d0-725e-523d-34c037ac2440", # x=1, y=4, code=0001-0004
|
||||
"B01": "3a14198c-c2d0-f3e7-871a-e470d144296f", # x=2, y=1, code=0001-0005
|
||||
"B02": "3a14198c-c2d0-2070-efc8-44e245f10c6f", # x=2, y=2, code=0001-0006
|
||||
"B03": "3a14198c-c2d0-1559-105d-0ea30682cab4", # x=2, y=3, code=0001-0007
|
||||
"B04": "3a14198c-c2d0-efce-0939-69ca5a7dfd39" # x=2, y=4, code=0001-0008
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
# ============================================================================
|
||||
# 物料类型配置
|
||||
# ============================================================================
|
||||
# 说明:
|
||||
# - 格式: PyLabRobot资源类型名称 → Bioyond系统typeId的UUID
|
||||
# - 这个映射基于 resource.model 属性 (不是显示名称!)
|
||||
# - UUID为空表示该类型暂未在Bioyond系统中定义
|
||||
MATERIAL_TYPE_MAPPINGS = {
|
||||
# ================================================配液站资源============================================================
|
||||
# ==================================================样品===============================================================
|
||||
"BIOYOND_PolymerStation_1FlaskCarrier": ("烧杯", "3a14196b-24f2-ca49-9081-0cab8021bf1a"), # 配液站-样品-烧杯
|
||||
"BIOYOND_PolymerStation_1BottleCarrier": ("试剂瓶", "3a14196b-8bcf-a460-4f74-23f21ca79e72"), # 配液站-样品-试剂瓶
|
||||
"BIOYOND_PolymerStation_6StockCarrier": ("分装板", "3a14196e-5dfe-6e21-0c79-fe2036d052c4"), # 配液站-样品-分装板
|
||||
"BIOYOND_PolymerStation_Liquid_Vial": ("10%分装小瓶", "3a14196c-76be-2279-4e22-7310d69aed68"), # 配液站-样品-分装板-第一排小瓶
|
||||
"BIOYOND_PolymerStation_Solid_Vial": ("90%分装小瓶", "3a14196c-cdcf-088d-dc7d-5cf38f0ad9ea"), # 配液站-样品-分装板-第二排小瓶
|
||||
# ==================================================试剂===============================================================
|
||||
"BIOYOND_PolymerStation_8StockCarrier": ("样品板", "3a14196e-b7a0-a5da-1931-35f3000281e9"), # 配液站-试剂-样品板(8孔)
|
||||
"BIOYOND_PolymerStation_Solid_Stock": ("样品瓶", "3a14196a-cf7d-8aea-48d8-b9662c7dba94"), # 配液站-试剂-样品板-样品瓶
|
||||
|
||||
}
|
||||
|
||||
# ============================================================================
|
||||
# 动态生成的库位UUID映射(从WAREHOUSE_MAPPING中提取)
|
||||
# ============================================================================
|
||||
|
||||
LOCATION_MAPPING = {}
|
||||
for warehouse_name, warehouse_config in WAREHOUSE_MAPPING.items():
|
||||
if "site_uuids" in warehouse_config:
|
||||
LOCATION_MAPPING.update(warehouse_config["site_uuids"])
|
||||
|
||||
# ============================================================================
|
||||
# 物料默认参数配置
|
||||
# ============================================================================
|
||||
# 说明:
|
||||
# - 为特定物料名称自动添加默认参数(如密度、分子量、单位等)
|
||||
# - 格式: 物料名称 → {参数字典}
|
||||
# - 在创建或更新物料时,会自动合并这些参数到 Parameters 字段
|
||||
# - unit: 物料的计量单位(会用于 unit 字段)
|
||||
# - density/densityUnit: 密度信息(会添加到 Parameters 中)
|
||||
|
||||
MATERIAL_DEFAULT_PARAMETERS = {
|
||||
# 溶剂类
|
||||
"NMP": {
|
||||
"unit": "毫升",
|
||||
"density": "1.03",
|
||||
"densityUnit": "g/mL",
|
||||
"description": "N-甲基吡咯烷酮 (N-Methyl-2-pyrrolidone)"
|
||||
},
|
||||
# 可以继续添加其他物料...
|
||||
}
|
||||
|
||||
# ============================================================================
|
||||
# 物料类型默认参数配置
|
||||
# ============================================================================
|
||||
# 说明:
|
||||
# - 为特定物料类型(UUID)自动添加默认参数
|
||||
# - 格式: Bioyond类型UUID → {参数字典}
|
||||
# - 优先级低于按名称匹配的配置
|
||||
MATERIAL_TYPE_PARAMETERS = {
|
||||
# 示例:
|
||||
# "3a14196b-24f2-ca49-9081-0cab8021bf1a": { # 烧杯
|
||||
# "unit": "个"
|
||||
# }
|
||||
}
|
||||
@@ -4,7 +4,8 @@ import time
|
||||
from typing import Optional, Dict, Any, List
|
||||
from typing_extensions import TypedDict
|
||||
import requests
|
||||
from unilabos.devices.workstation.bioyond_studio.config import API_CONFIG
|
||||
import pint
|
||||
|
||||
|
||||
from unilabos.devices.workstation.bioyond_studio.bioyond_rpc import BioyondException
|
||||
from unilabos.devices.workstation.bioyond_studio.station import BioyondWorkstation
|
||||
@@ -25,13 +26,89 @@ class ComputeExperimentDesignReturn(TypedDict):
|
||||
class BioyondDispensingStation(BioyondWorkstation):
|
||||
def __init__(
|
||||
self,
|
||||
config,
|
||||
# 桌子
|
||||
deck,
|
||||
*args,
|
||||
config: dict = None,
|
||||
deck=None,
|
||||
protocol_type=None,
|
||||
**kwargs,
|
||||
):
|
||||
super().__init__(config, deck, *args, **kwargs)
|
||||
):
|
||||
"""初始化配液站
|
||||
|
||||
Args:
|
||||
config: 配置字典,应包含material_type_mappings等配置
|
||||
deck: Deck对象
|
||||
protocol_type: 协议类型(由ROS系统传递,此处忽略)
|
||||
**kwargs: 其他可能的参数
|
||||
"""
|
||||
if config is None:
|
||||
config = {}
|
||||
|
||||
# 将 kwargs 合并到 config 中 (处理扁平化配置如 api_key)
|
||||
config.update(kwargs)
|
||||
|
||||
if deck is None and config:
|
||||
deck = config.get('deck')
|
||||
|
||||
# 🔧 修复: 确保 Deck 上的 warehouses 具有正确的 UUID (必须在 super().__init__ 之前执行,因为父类会触发同步)
|
||||
# 从配置中读取 warehouse_mapping,并应用到实际的 deck 资源上
|
||||
if config and "warehouse_mapping" in config and deck:
|
||||
warehouse_mapping = config["warehouse_mapping"]
|
||||
print(f"正在根据配置更新 Deck warehouse UUIDs... (共有 {len(warehouse_mapping)} 个配置)")
|
||||
|
||||
user_deck = deck
|
||||
# 初始化 warehouses 字典
|
||||
if not hasattr(user_deck, "warehouses") or user_deck.warehouses is None:
|
||||
user_deck.warehouses = {}
|
||||
|
||||
# 1. 尝试从 children 中查找匹配的资源
|
||||
for child in user_deck.children:
|
||||
# 简单判断: 如果名字在 mapping 中,就认为是 warehouse
|
||||
if child.name in warehouse_mapping:
|
||||
user_deck.warehouses[child.name] = child
|
||||
print(f" - 从子资源中找到 warehouse: {child.name}")
|
||||
|
||||
# 2. 如果还是没找到,且 Deck 类有 setup 方法,尝试调用 setup (针对 Deck 对象正确但未初始化的情况)
|
||||
if not user_deck.warehouses and hasattr(user_deck, "setup"):
|
||||
print(" - 尝试调用 deck.setup() 初始化仓库...")
|
||||
try:
|
||||
user_deck.setup()
|
||||
# setup 后重新检查
|
||||
if hasattr(user_deck, "warehouses") and user_deck.warehouses:
|
||||
print(f" - setup() 成功,找到 {len(user_deck.warehouses)} 个仓库")
|
||||
except Exception as e:
|
||||
print(f" - 调用 setup() 失败: {e}")
|
||||
|
||||
# 3. 如果仍然为空,可能需要手动创建 (仅针对特定已知的 Deck 类型进行补救,这里暂时只打印警告)
|
||||
if not user_deck.warehouses:
|
||||
print(" - ⚠️ 仍然无法找到任何 warehouse 资源!")
|
||||
|
||||
for wh_name, wh_config in warehouse_mapping.items():
|
||||
target_uuid = wh_config.get("uuid")
|
||||
|
||||
# 尝试在 deck.warehouses 中查找
|
||||
wh_resource = None
|
||||
if hasattr(user_deck, "warehouses") and wh_name in user_deck.warehouses:
|
||||
wh_resource = user_deck.warehouses[wh_name]
|
||||
|
||||
# 如果没找到,尝试在所有子资源中查找
|
||||
if not wh_resource:
|
||||
wh_resource = user_deck.get_resource(wh_name)
|
||||
|
||||
if wh_resource:
|
||||
if target_uuid:
|
||||
current_uuid = getattr(wh_resource, "uuid", None)
|
||||
print(f"✅ 更新仓库 '{wh_name}' UUID: {current_uuid} -> {target_uuid}")
|
||||
|
||||
# 动态添加 uuid 属性
|
||||
wh_resource.uuid = target_uuid
|
||||
# 同时也确保 category 正确,避免 graphio 识别错误
|
||||
# wh_resource.category = "warehouse"
|
||||
else:
|
||||
print(f"⚠️ 仓库 '{wh_name}' 在配置中没有 UUID")
|
||||
else:
|
||||
print(f"❌ 在 Deck 中未找到配置的仓库: '{wh_name}'")
|
||||
|
||||
super().__init__(bioyond_config=config, deck=deck)
|
||||
|
||||
# self.config = config
|
||||
# self.api_key = config["api_key"]
|
||||
# self.host = config["api_host"]
|
||||
@@ -43,6 +120,41 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
# 用于跟踪任务完成状态的字典: {orderCode: {status, order_id, timestamp}}
|
||||
self.order_completion_status = {}
|
||||
|
||||
# 初始化 pint 单位注册表
|
||||
self.ureg = pint.UnitRegistry()
|
||||
|
||||
# 化合物信息
|
||||
self.compound_info = {
|
||||
"MolWt": {
|
||||
"MDA": 108.14 * self.ureg.g / self.ureg.mol,
|
||||
"TDA": 122.16 * self.ureg.g / self.ureg.mol,
|
||||
"PAPP": 521.62 * self.ureg.g / self.ureg.mol,
|
||||
"BTDA": 322.23 * self.ureg.g / self.ureg.mol,
|
||||
"BPDA": 294.22 * self.ureg.g / self.ureg.mol,
|
||||
"6FAP": 366.26 * self.ureg.g / self.ureg.mol,
|
||||
"PMDA": 218.12 * self.ureg.g / self.ureg.mol,
|
||||
"MPDA": 108.14 * self.ureg.g / self.ureg.mol,
|
||||
"SIDA": 248.51 * self.ureg.g / self.ureg.mol,
|
||||
"ODA": 200.236 * self.ureg.g / self.ureg.mol,
|
||||
"4,4'-ODA": 200.236 * self.ureg.g / self.ureg.mol,
|
||||
"134": 292.34 * self.ureg.g / self.ureg.mol,
|
||||
},
|
||||
"FuncGroup": {
|
||||
"MDA": "Amine",
|
||||
"TDA": "Amine",
|
||||
"PAPP": "Amine",
|
||||
"BTDA": "Anhydride",
|
||||
"BPDA": "Anhydride",
|
||||
"6FAP": "Amine",
|
||||
"MPDA": "Amine",
|
||||
"SIDA": "Amine",
|
||||
"PMDA": "Anhydride",
|
||||
"ODA": "Amine",
|
||||
"4,4'-ODA": "Amine",
|
||||
"134": "Amine",
|
||||
}
|
||||
}
|
||||
|
||||
def _post_project_api(self, endpoint: str, data: Any) -> Dict[str, Any]:
|
||||
"""项目接口通用POST调用
|
||||
|
||||
@@ -54,7 +166,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
dict: 服务端响应,失败时返回 {code:0,message,...}
|
||||
"""
|
||||
request_data = {
|
||||
"apiKey": API_CONFIG["api_key"],
|
||||
"apiKey": self.bioyond_config["api_key"],
|
||||
"requestTime": self.hardware_interface.get_current_time_iso8601(),
|
||||
"data": data
|
||||
}
|
||||
@@ -85,7 +197,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
dict: 服务端响应,失败时返回 {code:0,message,...}
|
||||
"""
|
||||
request_data = {
|
||||
"apiKey": API_CONFIG["api_key"],
|
||||
"apiKey": self.bioyond_config["api_key"],
|
||||
"requestTime": self.hardware_interface.get_current_time_iso8601(),
|
||||
"data": data
|
||||
}
|
||||
@@ -118,20 +230,22 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
ratio = json.loads(ratio)
|
||||
except Exception:
|
||||
ratio = {}
|
||||
root = str(Path(__file__).resolve().parents[3])
|
||||
if root not in sys.path:
|
||||
sys.path.append(root)
|
||||
try:
|
||||
mod = importlib.import_module("tem.compute")
|
||||
except Exception as e:
|
||||
raise BioyondException(f"无法导入计算模块: {e}")
|
||||
try:
|
||||
wp = float(wt_percent) if isinstance(wt_percent, str) else wt_percent
|
||||
mt = float(m_tot) if isinstance(m_tot, str) else m_tot
|
||||
tp = float(titration_percent) if isinstance(titration_percent, str) else titration_percent
|
||||
except Exception as e:
|
||||
raise BioyondException(f"参数解析失败: {e}")
|
||||
res = mod.generate_experiment_design(ratio=ratio, wt_percent=wp, m_tot=mt, titration_percent=tp)
|
||||
|
||||
# 2. 调用内部计算方法
|
||||
res = self._generate_experiment_design(
|
||||
ratio=ratio,
|
||||
wt_percent=wp,
|
||||
m_tot=mt,
|
||||
titration_percent=tp
|
||||
)
|
||||
|
||||
# 3. 构造返回结果
|
||||
out = {
|
||||
"solutions": res.get("solutions", []),
|
||||
"titration": res.get("titration", {}),
|
||||
@@ -140,11 +254,248 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
"return_info": json.dumps(res, ensure_ascii=False)
|
||||
}
|
||||
return out
|
||||
|
||||
except BioyondException:
|
||||
raise
|
||||
except Exception as e:
|
||||
raise BioyondException(str(e))
|
||||
|
||||
def _generate_experiment_design(
|
||||
self,
|
||||
ratio: dict,
|
||||
wt_percent: float = 0.25,
|
||||
m_tot: float = 70,
|
||||
titration_percent: float = 0.03,
|
||||
) -> dict:
|
||||
"""内部方法:生成实验设计
|
||||
|
||||
根据FuncGroup自动区分二胺和二酐,每种二胺单独配溶液,严格按照ratio顺序投料。
|
||||
|
||||
参数:
|
||||
ratio: 化合物配比字典,格式: {"compound_name": ratio_value}
|
||||
wt_percent: 固体重量百分比
|
||||
m_tot: 反应混合物总质量(g)
|
||||
titration_percent: 滴定溶液百分比
|
||||
|
||||
返回:
|
||||
包含实验设计详细参数的字典
|
||||
"""
|
||||
# 溶剂密度
|
||||
ρ_solvent = 1.03 * self.ureg.g / self.ureg.ml
|
||||
# 二酐溶解度
|
||||
solubility = 0.02 * self.ureg.g / self.ureg.ml
|
||||
# 投入固体时最小溶剂体积
|
||||
V_min = 30 * self.ureg.ml
|
||||
m_tot = m_tot * self.ureg.g
|
||||
|
||||
# 保持ratio中的顺序
|
||||
compound_names = list(ratio.keys())
|
||||
compound_ratios = list(ratio.values())
|
||||
|
||||
# 验证所有化合物是否在 compound_info 中定义
|
||||
undefined_compounds = [name for name in compound_names if name not in self.compound_info["MolWt"]]
|
||||
if undefined_compounds:
|
||||
available = list(self.compound_info["MolWt"].keys())
|
||||
raise ValueError(
|
||||
f"以下化合物未在 compound_info 中定义: {undefined_compounds}。"
|
||||
f"可用的化合物: {available}"
|
||||
)
|
||||
|
||||
# 获取各化合物的分子量和官能团类型
|
||||
molecular_weights = [self.compound_info["MolWt"][name] for name in compound_names]
|
||||
func_groups = [self.compound_info["FuncGroup"][name] for name in compound_names]
|
||||
|
||||
# 记录化合物信息用于调试
|
||||
self.hardware_interface._logger.info(f"化合物名称: {compound_names}")
|
||||
self.hardware_interface._logger.info(f"官能团类型: {func_groups}")
|
||||
|
||||
# 按原始顺序分离二胺和二酐
|
||||
ordered_compounds = list(zip(compound_names, compound_ratios, molecular_weights, func_groups))
|
||||
diamine_compounds = [(name, ratio_val, mw, i) for i, (name, ratio_val, mw, fg) in enumerate(ordered_compounds) if fg == "Amine"]
|
||||
anhydride_compounds = [(name, ratio_val, mw, i) for i, (name, ratio_val, mw, fg) in enumerate(ordered_compounds) if fg == "Anhydride"]
|
||||
|
||||
if not diamine_compounds or not anhydride_compounds:
|
||||
raise ValueError(
|
||||
f"需要同时包含二胺(Amine)和二酐(Anhydride)化合物。"
|
||||
f"当前二胺: {[c[0] for c in diamine_compounds]}, "
|
||||
f"当前二酐: {[c[0] for c in anhydride_compounds]}"
|
||||
)
|
||||
|
||||
# 计算加权平均分子量 (基于摩尔比)
|
||||
total_molar_ratio = sum(compound_ratios)
|
||||
weighted_molecular_weight = sum(ratio_val * mw for ratio_val, mw in zip(compound_ratios, molecular_weights))
|
||||
|
||||
# 取最后一个二酐用于滴定
|
||||
titration_anhydride = anhydride_compounds[-1]
|
||||
solid_anhydrides = anhydride_compounds[:-1] if len(anhydride_compounds) > 1 else []
|
||||
|
||||
# 二胺溶液配制参数 - 每种二胺单独配制
|
||||
diamine_solutions = []
|
||||
total_diamine_volume = 0 * self.ureg.ml
|
||||
|
||||
# 计算反应物的总摩尔量
|
||||
n_reactant = m_tot * wt_percent / weighted_molecular_weight
|
||||
|
||||
for name, ratio_val, mw, order_index in diamine_compounds:
|
||||
# 跳过 SIDA
|
||||
if name == "SIDA":
|
||||
continue
|
||||
|
||||
# 计算该二胺需要的摩尔数
|
||||
n_diamine_needed = n_reactant * ratio_val
|
||||
|
||||
# 二胺溶液配制参数 (每种二胺固定配制参数)
|
||||
m_diamine_solid = 5.0 * self.ureg.g # 每种二胺固体质量
|
||||
V_solvent_for_this = 20 * self.ureg.ml # 每种二胺溶剂体积
|
||||
m_solvent_for_this = ρ_solvent * V_solvent_for_this
|
||||
|
||||
# 计算该二胺溶液的浓度
|
||||
c_diamine = (m_diamine_solid / mw) / V_solvent_for_this
|
||||
|
||||
# 计算需要移取的溶液体积
|
||||
V_diamine_needed = n_diamine_needed / c_diamine
|
||||
|
||||
diamine_solutions.append({
|
||||
"name": name,
|
||||
"order": order_index,
|
||||
"solid_mass": m_diamine_solid.magnitude,
|
||||
"solvent_volume": V_solvent_for_this.magnitude,
|
||||
"concentration": c_diamine.magnitude,
|
||||
"volume_needed": V_diamine_needed.magnitude,
|
||||
"molar_ratio": ratio_val
|
||||
})
|
||||
|
||||
total_diamine_volume += V_diamine_needed
|
||||
|
||||
# 按原始顺序排序
|
||||
diamine_solutions.sort(key=lambda x: x["order"])
|
||||
|
||||
# 计算滴定二酐的质量
|
||||
titration_name, titration_ratio, titration_mw, _ = titration_anhydride
|
||||
m_titration_anhydride = n_reactant * titration_ratio * titration_mw
|
||||
m_titration_90 = m_titration_anhydride * (1 - titration_percent)
|
||||
m_titration_10 = m_titration_anhydride * titration_percent
|
||||
|
||||
# 计算其他固体二酐的质量 (按顺序)
|
||||
solid_anhydride_masses = []
|
||||
for name, ratio_val, mw, order_index in solid_anhydrides:
|
||||
mass = n_reactant * ratio_val * mw
|
||||
solid_anhydride_masses.append({
|
||||
"name": name,
|
||||
"order": order_index,
|
||||
"mass": mass.magnitude,
|
||||
"molar_ratio": ratio_val
|
||||
})
|
||||
|
||||
# 按原始顺序排序
|
||||
solid_anhydride_masses.sort(key=lambda x: x["order"])
|
||||
|
||||
# 计算溶剂用量
|
||||
total_diamine_solution_mass = sum(
|
||||
sol["volume_needed"] * ρ_solvent for sol in diamine_solutions
|
||||
) * self.ureg.ml
|
||||
|
||||
# 预估滴定溶剂量、计算补加溶剂量
|
||||
m_solvent_titration = m_titration_10 / solubility * ρ_solvent
|
||||
m_solvent_add = m_tot * (1 - wt_percent) - total_diamine_solution_mass - m_solvent_titration
|
||||
|
||||
# 检查最小溶剂体积要求
|
||||
total_liquid_volume = (total_diamine_solution_mass + m_solvent_add) / ρ_solvent
|
||||
m_tot_min = V_min / total_liquid_volume * m_tot
|
||||
|
||||
# 如果需要,按比例放大
|
||||
scale_factor = 1.0
|
||||
if m_tot_min > m_tot:
|
||||
scale_factor = (m_tot_min / m_tot).magnitude
|
||||
m_titration_90 *= scale_factor
|
||||
m_titration_10 *= scale_factor
|
||||
m_solvent_add *= scale_factor
|
||||
m_solvent_titration *= scale_factor
|
||||
|
||||
# 更新二胺溶液用量
|
||||
for sol in diamine_solutions:
|
||||
sol["volume_needed"] *= scale_factor
|
||||
|
||||
# 更新固体二酐用量
|
||||
for anhydride in solid_anhydride_masses:
|
||||
anhydride["mass"] *= scale_factor
|
||||
|
||||
m_tot = m_tot_min
|
||||
|
||||
# 生成投料顺序
|
||||
feeding_order = []
|
||||
|
||||
# 1. 固体二酐 (按顺序)
|
||||
for anhydride in solid_anhydride_masses:
|
||||
feeding_order.append({
|
||||
"step": len(feeding_order) + 1,
|
||||
"type": "solid_anhydride",
|
||||
"name": anhydride["name"],
|
||||
"amount": anhydride["mass"],
|
||||
"order": anhydride["order"]
|
||||
})
|
||||
|
||||
# 2. 二胺溶液 (按顺序)
|
||||
for sol in diamine_solutions:
|
||||
feeding_order.append({
|
||||
"step": len(feeding_order) + 1,
|
||||
"type": "diamine_solution",
|
||||
"name": sol["name"],
|
||||
"amount": sol["volume_needed"],
|
||||
"order": sol["order"]
|
||||
})
|
||||
|
||||
# 3. 主要二酐粉末
|
||||
feeding_order.append({
|
||||
"step": len(feeding_order) + 1,
|
||||
"type": "main_anhydride",
|
||||
"name": titration_name,
|
||||
"amount": m_titration_90.magnitude,
|
||||
"order": titration_anhydride[3]
|
||||
})
|
||||
|
||||
# 4. 补加溶剂
|
||||
if m_solvent_add > 0:
|
||||
feeding_order.append({
|
||||
"step": len(feeding_order) + 1,
|
||||
"type": "additional_solvent",
|
||||
"name": "溶剂",
|
||||
"amount": m_solvent_add.magnitude,
|
||||
"order": 999
|
||||
})
|
||||
|
||||
# 5. 滴定二酐溶液
|
||||
feeding_order.append({
|
||||
"step": len(feeding_order) + 1,
|
||||
"type": "titration_anhydride",
|
||||
"name": f"{titration_name} 滴定液",
|
||||
"amount": m_titration_10.magnitude,
|
||||
"titration_solvent": m_solvent_titration.magnitude,
|
||||
"order": titration_anhydride[3]
|
||||
})
|
||||
|
||||
# 返回实验设计结果
|
||||
results = {
|
||||
"total_mass": m_tot.magnitude,
|
||||
"scale_factor": scale_factor,
|
||||
"solutions": diamine_solutions,
|
||||
"solids": solid_anhydride_masses,
|
||||
"titration": {
|
||||
"name": titration_name,
|
||||
"main_portion": m_titration_90.magnitude,
|
||||
"titration_portion": m_titration_10.magnitude,
|
||||
"titration_solvent": m_solvent_titration.magnitude,
|
||||
},
|
||||
"solvents": {
|
||||
"additional_solvent": m_solvent_add.magnitude,
|
||||
"total_liquid_volume": total_liquid_volume.magnitude
|
||||
},
|
||||
"feeding_order": feeding_order,
|
||||
"minimum_required_mass": m_tot_min.magnitude
|
||||
}
|
||||
|
||||
return results
|
||||
|
||||
# 90%10%小瓶投料任务创建方法
|
||||
def create_90_10_vial_feeding_task(self,
|
||||
order_name: str = None,
|
||||
@@ -961,6 +1312,108 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
'actualVolume': actual_volume
|
||||
}
|
||||
|
||||
def _simplify_report(self, report) -> Dict[str, Any]:
|
||||
"""简化实验报告,只保留关键信息,去除冗余的工作流参数"""
|
||||
if not isinstance(report, dict):
|
||||
return report
|
||||
|
||||
data = report.get('data', {})
|
||||
if not isinstance(data, dict):
|
||||
return report
|
||||
|
||||
# 提取关键信息
|
||||
simplified = {
|
||||
'name': data.get('name'),
|
||||
'code': data.get('code'),
|
||||
'requester': data.get('requester'),
|
||||
'workflowName': data.get('workflowName'),
|
||||
'workflowStep': data.get('workflowStep'),
|
||||
'requestTime': data.get('requestTime'),
|
||||
'startPreparationTime': data.get('startPreparationTime'),
|
||||
'completeTime': data.get('completeTime'),
|
||||
'useTime': data.get('useTime'),
|
||||
'status': data.get('status'),
|
||||
'statusName': data.get('statusName'),
|
||||
}
|
||||
|
||||
# 提取物料信息(简化版)
|
||||
pre_intakes = data.get('preIntakes', [])
|
||||
if pre_intakes and isinstance(pre_intakes, list):
|
||||
first_intake = pre_intakes[0]
|
||||
sample_materials = first_intake.get('sampleMaterials', [])
|
||||
|
||||
# 简化物料信息
|
||||
simplified_materials = []
|
||||
for material in sample_materials:
|
||||
if isinstance(material, dict):
|
||||
mat_info = {
|
||||
'materialName': material.get('materialName'),
|
||||
'materialTypeName': material.get('materialTypeName'),
|
||||
'materialCode': material.get('materialCode'),
|
||||
'materialLocation': material.get('materialLocation'),
|
||||
}
|
||||
|
||||
# 解析parameters中的关键信息(如密度、加料历史等)
|
||||
params_str = material.get('parameters', '{}')
|
||||
try:
|
||||
params = json.loads(params_str) if isinstance(params_str, str) else params_str
|
||||
if isinstance(params, dict):
|
||||
# 只保留关键参数
|
||||
if 'density' in params:
|
||||
mat_info['density'] = params['density']
|
||||
if 'feedingHistory' in params:
|
||||
mat_info['feedingHistory'] = params['feedingHistory']
|
||||
if 'liquidVolume' in params:
|
||||
mat_info['liquidVolume'] = params['liquidVolume']
|
||||
if 'm_diamine_tot' in params:
|
||||
mat_info['m_diamine_tot'] = params['m_diamine_tot']
|
||||
if 'wt_diamine' in params:
|
||||
mat_info['wt_diamine'] = params['wt_diamine']
|
||||
except:
|
||||
pass
|
||||
|
||||
simplified_materials.append(mat_info)
|
||||
|
||||
simplified['sampleMaterials'] = simplified_materials
|
||||
|
||||
# 提取extraProperties中的实际值
|
||||
extra_props = first_intake.get('extraProperties', {})
|
||||
if isinstance(extra_props, dict):
|
||||
simplified_extra = {}
|
||||
for key, value in extra_props.items():
|
||||
try:
|
||||
parsed_value = json.loads(value) if isinstance(value, str) else value
|
||||
simplified_extra[key] = parsed_value
|
||||
except:
|
||||
simplified_extra[key] = value
|
||||
simplified['extraProperties'] = simplified_extra
|
||||
|
||||
return {
|
||||
'data': simplified,
|
||||
'code': report.get('code'),
|
||||
'message': report.get('message'),
|
||||
'timestamp': report.get('timestamp')
|
||||
}
|
||||
|
||||
def scheduler_start(self) -> dict:
|
||||
"""启动调度器 - 启动Bioyond工作站的任务调度器,开始执行队列中的任务
|
||||
|
||||
Returns:
|
||||
dict: 包含return_info的字典,return_info为整型(1=成功)
|
||||
|
||||
Raises:
|
||||
BioyondException: 调度器启动失败时抛出异常
|
||||
"""
|
||||
result = self.hardware_interface.scheduler_start()
|
||||
self.hardware_interface._logger.info(f"调度器启动结果: {result}")
|
||||
|
||||
if result != 1:
|
||||
error_msg = "启动调度器失败: 有未处理错误,调度无法启动。请检查Bioyond系统状态。"
|
||||
self.hardware_interface._logger.error(error_msg)
|
||||
raise BioyondException(error_msg)
|
||||
|
||||
return {"return_info": result}
|
||||
|
||||
# 等待多个任务完成并获取实验报告
|
||||
def wait_for_multiple_orders_and_get_reports(self,
|
||||
batch_create_result: str = None,
|
||||
@@ -1002,7 +1455,12 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
|
||||
# 验证batch_create_result参数
|
||||
if not batch_create_result or batch_create_result == "":
|
||||
raise BioyondException("batch_create_result参数为空,请确保从batch_create节点正确连接handle")
|
||||
raise BioyondException(
|
||||
"batch_create_result参数为空,请确保:\n"
|
||||
"1. batch_create节点与wait节点之间正确连接了handle\n"
|
||||
"2. batch_create节点成功执行并返回了结果\n"
|
||||
"3. 检查上游batch_create任务是否成功创建了订单"
|
||||
)
|
||||
|
||||
# 解析batch_create_result JSON对象
|
||||
try:
|
||||
@@ -1031,7 +1489,17 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
|
||||
# 验证提取的数据
|
||||
if not order_codes:
|
||||
raise BioyondException("batch_create_result中未找到order_codes字段或为空")
|
||||
self.hardware_interface._logger.error(
|
||||
f"batch_create任务未生成任何订单。batch_create_result内容: {batch_create_result}"
|
||||
)
|
||||
raise BioyondException(
|
||||
"batch_create_result中未找到order_codes或为空。\n"
|
||||
"可能的原因:\n"
|
||||
"1. batch_create任务执行失败(检查任务是否报错)\n"
|
||||
"2. 物料配置问题(如'物料样品板分配失败')\n"
|
||||
"3. Bioyond系统状态异常\n"
|
||||
f"请检查batch_create任务的执行结果"
|
||||
)
|
||||
if not order_ids:
|
||||
raise BioyondException("batch_create_result中未找到order_ids字段或为空")
|
||||
|
||||
@@ -1114,6 +1582,8 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
self.hardware_interface._logger.info(
|
||||
f"成功获取任务 {order_code} 的实验报告"
|
||||
)
|
||||
# 简化报告,去除冗余信息
|
||||
report = self._simplify_report(report)
|
||||
|
||||
reports.append({
|
||||
"order_code": order_code,
|
||||
@@ -1288,7 +1758,7 @@ class BioyondDispensingStation(BioyondWorkstation):
|
||||
f"开始执行批量物料转移: {len(transfer_groups)}组任务 -> {target_device_id}"
|
||||
)
|
||||
|
||||
from .config import WAREHOUSE_MAPPING
|
||||
warehouse_mapping = self.bioyond_config.get("warehouse_mapping", {})
|
||||
results = []
|
||||
successful_count = 0
|
||||
failed_count = 0
|
||||
File diff suppressed because it is too large
Load Diff
@@ -6,6 +6,7 @@ Bioyond Workstation Implementation
|
||||
"""
|
||||
import time
|
||||
import traceback
|
||||
import threading
|
||||
from datetime import datetime
|
||||
from typing import Dict, Any, List, Optional, Union
|
||||
import json
|
||||
@@ -23,12 +24,94 @@ from unilabos.ros.nodes.presets.workstation import ROS2WorkstationNode
|
||||
from unilabos.ros.msgs.message_converter import convert_to_ros_msg, Float64, String
|
||||
from pylabrobot.resources.resource import Resource as ResourcePLR
|
||||
|
||||
from unilabos.devices.workstation.bioyond_studio.config import (
|
||||
API_CONFIG, WORKFLOW_MAPPINGS, MATERIAL_TYPE_MAPPINGS, WAREHOUSE_MAPPING, HTTP_SERVICE_CONFIG
|
||||
)
|
||||
|
||||
from unilabos.devices.workstation.workstation_http_service import WorkstationHTTPService
|
||||
|
||||
|
||||
class ConnectionMonitor:
|
||||
"""Bioyond连接监控器"""
|
||||
def __init__(self, workstation, check_interval=30):
|
||||
self.workstation = workstation
|
||||
self.check_interval = check_interval
|
||||
self._running = False
|
||||
self._thread = None
|
||||
self._last_status = "unknown"
|
||||
|
||||
def start(self):
|
||||
if self._running:
|
||||
return
|
||||
self._running = True
|
||||
self._thread = threading.Thread(target=self._monitor_loop, daemon=True, name="BioyondConnectionMonitor")
|
||||
self._thread.start()
|
||||
logger.info("Bioyond连接监控器已启动")
|
||||
|
||||
def stop(self):
|
||||
self._running = False
|
||||
if self._thread:
|
||||
self._thread.join(timeout=2)
|
||||
logger.info("Bioyond连接监控器已停止")
|
||||
|
||||
def _monitor_loop(self):
|
||||
while self._running:
|
||||
try:
|
||||
# 使用 lightweight API 检查连接
|
||||
# query_matial_type_list 是比较快的查询
|
||||
start_time = time.time()
|
||||
result = self.workstation.hardware_interface.material_type_list()
|
||||
|
||||
status = "online" if result else "offline"
|
||||
msg = "Connection established" if status == "online" else "Failed to get material type list"
|
||||
|
||||
if status != self._last_status:
|
||||
logger.info(f"Bioyond连接状态变更: {self._last_status} -> {status}")
|
||||
self._publish_event(status, msg)
|
||||
self._last_status = status
|
||||
|
||||
# 发布心跳 (可选,或者只在状态变更时发布)
|
||||
# self._publish_event(status, msg)
|
||||
|
||||
except Exception as e:
|
||||
logger.error(f"Bioyond连接检查异常: {e}")
|
||||
if self._last_status != "error":
|
||||
self._publish_event("error", str(e))
|
||||
self._last_status = "error"
|
||||
|
||||
time.sleep(self.check_interval)
|
||||
|
||||
def _publish_event(self, status, message):
|
||||
try:
|
||||
if hasattr(self.workstation, "_ros_node") and self.workstation._ros_node:
|
||||
event_data = {
|
||||
"status": status,
|
||||
"message": message,
|
||||
"timestamp": datetime.now().isoformat()
|
||||
}
|
||||
|
||||
# 动态发布消息,需要在 ROS2DeviceNode 中有对应支持
|
||||
# 这里假设通用事件发布机制,使用 String 类型的 topic
|
||||
# 话题: /<namespace>/events/device_status
|
||||
ns = self.workstation._ros_node.namespace
|
||||
topic = f"{ns}/events/device_status"
|
||||
|
||||
# 使用 ROS2DeviceNode 的发布功能
|
||||
# 如果没有预定义的 publisher,需要动态创建
|
||||
# 注意:workstation base node 可能没有自动创建 arbitrary publishers 的机制
|
||||
# 这里我们先尝试用 String json 发布
|
||||
|
||||
# 在 ROS2DeviceNode 中通常需要先 create_publisher
|
||||
# 为了简单起见,我们检查是否已有 publisher,没有则创建
|
||||
if not hasattr(self.workstation, "_device_status_pub"):
|
||||
self.workstation._device_status_pub = self.workstation._ros_node.create_publisher(
|
||||
String, topic, 10
|
||||
)
|
||||
|
||||
self.workstation._device_status_pub.publish(
|
||||
convert_to_ros_msg(String, json.dumps(event_data, ensure_ascii=False))
|
||||
)
|
||||
except Exception as e:
|
||||
logger.error(f"发布设备状态事件失败: {e}")
|
||||
|
||||
|
||||
class BioyondResourceSynchronizer(ResourceSynchronizer):
|
||||
"""Bioyond资源同步器
|
||||
|
||||
@@ -174,9 +257,8 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
|
||||
else:
|
||||
logger.info(f"[同步→Bioyond] ➕ 物料不存在于 Bioyond,将创建新物料并入库")
|
||||
|
||||
# 第1步:获取仓库配置
|
||||
from .config import WAREHOUSE_MAPPING
|
||||
warehouse_mapping = WAREHOUSE_MAPPING
|
||||
# 第1步:从配置中获取仓库配置
|
||||
warehouse_mapping = self.bioyond_config.get("warehouse_mapping", {})
|
||||
|
||||
# 确定目标仓库名称
|
||||
parent_name = None
|
||||
@@ -238,14 +320,20 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
|
||||
# 第2步:转换为 Bioyond 格式
|
||||
logger.info(f"[同步→Bioyond] 🔄 转换物料为 Bioyond 格式...")
|
||||
|
||||
# 导入物料默认参数配置
|
||||
from .config import MATERIAL_DEFAULT_PARAMETERS
|
||||
# 从配置中获取物料默认参数
|
||||
material_default_params = self.workstation.bioyond_config.get("material_default_parameters", {})
|
||||
material_type_params = self.workstation.bioyond_config.get("material_type_parameters", {})
|
||||
|
||||
# 合并参数配置:物料名称参数 + typeId参数(转换为 type:<uuid> 格式)
|
||||
merged_params = material_default_params.copy()
|
||||
for type_id, params in material_type_params.items():
|
||||
merged_params[f"type:{type_id}"] = params
|
||||
|
||||
bioyond_material = resource_plr_to_bioyond(
|
||||
[resource],
|
||||
type_mapping=self.workstation.bioyond_config["material_type_mappings"],
|
||||
warehouse_mapping=self.workstation.bioyond_config["warehouse_mapping"],
|
||||
material_params=MATERIAL_DEFAULT_PARAMETERS
|
||||
material_params=merged_params
|
||||
)[0]
|
||||
|
||||
logger.info(f"[同步→Bioyond] 🔧 准备覆盖locations字段,目标仓库: {parent_name}, 库位: {update_site}, UUID: {target_location_uuid[:8]}...")
|
||||
@@ -468,13 +556,20 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
|
||||
return material_bioyond_id
|
||||
|
||||
# 转换为 Bioyond 格式
|
||||
from .config import MATERIAL_DEFAULT_PARAMETERS
|
||||
# 从配置中获取物料默认参数
|
||||
material_default_params = self.workstation.bioyond_config.get("material_default_parameters", {})
|
||||
material_type_params = self.workstation.bioyond_config.get("material_type_parameters", {})
|
||||
|
||||
# 合并参数配置:物料名称参数 + typeId参数(转换为 type:<uuid> 格式)
|
||||
merged_params = material_default_params.copy()
|
||||
for type_id, params in material_type_params.items():
|
||||
merged_params[f"type:{type_id}"] = params
|
||||
|
||||
bioyond_material = resource_plr_to_bioyond(
|
||||
[resource],
|
||||
type_mapping=self.workstation.bioyond_config["material_type_mappings"],
|
||||
warehouse_mapping=self.workstation.bioyond_config["warehouse_mapping"],
|
||||
material_params=MATERIAL_DEFAULT_PARAMETERS
|
||||
material_params=merged_params
|
||||
)[0]
|
||||
|
||||
# ⚠️ 关键:创建物料时不设置 locations,让 Bioyond 系统暂不分配库位
|
||||
@@ -528,8 +623,7 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
|
||||
logger.info(f"[物料入库] 目标库位: {update_site}")
|
||||
|
||||
# 获取仓库配置和目标库位 UUID
|
||||
from .config import WAREHOUSE_MAPPING
|
||||
warehouse_mapping = WAREHOUSE_MAPPING
|
||||
warehouse_mapping = self.workstation.bioyond_config.get("warehouse_mapping", {})
|
||||
|
||||
parent_name = None
|
||||
target_location_uuid = None
|
||||
@@ -584,6 +678,44 @@ class BioyondWorkstation(WorkstationBase):
|
||||
集成Bioyond物料管理的工作站实现
|
||||
"""
|
||||
|
||||
def _publish_task_status(
|
||||
self,
|
||||
task_id: str,
|
||||
task_type: str,
|
||||
status: str,
|
||||
result: dict = None,
|
||||
progress: float = 0.0,
|
||||
task_code: str = None
|
||||
):
|
||||
"""发布任务状态事件"""
|
||||
try:
|
||||
if not getattr(self, "_ros_node", None):
|
||||
return
|
||||
|
||||
event_data = {
|
||||
"task_id": task_id,
|
||||
"task_code": task_code,
|
||||
"task_type": task_type,
|
||||
"status": status,
|
||||
"progress": progress,
|
||||
"timestamp": datetime.now().isoformat()
|
||||
}
|
||||
if result:
|
||||
event_data["result"] = result
|
||||
|
||||
topic = f"{self._ros_node.namespace}/events/task_status"
|
||||
|
||||
if not hasattr(self, "_task_status_pub"):
|
||||
self._task_status_pub = self._ros_node.create_publisher(
|
||||
String, topic, 10
|
||||
)
|
||||
|
||||
self._task_status_pub.publish(
|
||||
convert_to_ros_msg(String, json.dumps(event_data, ensure_ascii=False))
|
||||
)
|
||||
except Exception as e:
|
||||
logger.error(f"发布任务状态事件失败: {e}")
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
bioyond_config: Optional[Dict[str, Any]] = None,
|
||||
@@ -605,10 +737,28 @@ class BioyondWorkstation(WorkstationBase):
|
||||
raise ValueError("Deck 配置不能为空,请在配置文件中添加正确的 deck 配置")
|
||||
|
||||
# 初始化 warehouses 属性
|
||||
self.deck.warehouses = {}
|
||||
for resource in self.deck.children:
|
||||
if isinstance(resource, WareHouse):
|
||||
self.deck.warehouses[resource.name] = resource
|
||||
if not hasattr(self.deck, "warehouses") or self.deck.warehouses is None:
|
||||
self.deck.warehouses = {}
|
||||
|
||||
# 仅当 warehouses 为空时尝试重新扫描(避免覆盖子类的修复)
|
||||
if not self.deck.warehouses:
|
||||
for resource in self.deck.children:
|
||||
# 兼容性增强: 只要是仓库类别或者是 WareHouse 实例均可
|
||||
is_warehouse = isinstance(resource, WareHouse) or getattr(resource, "category", "") == "warehouse"
|
||||
|
||||
# 如果配置中有定义,也可以认定为 warehouse
|
||||
if not is_warehouse and "warehouse_mapping" in bioyond_config:
|
||||
if resource.name in bioyond_config["warehouse_mapping"]:
|
||||
is_warehouse = True
|
||||
|
||||
if is_warehouse:
|
||||
self.deck.warehouses[resource.name] = resource
|
||||
# 确保 category 被正确设置,方便后续使用
|
||||
if getattr(resource, "category", "") != "warehouse":
|
||||
try:
|
||||
resource.category = "warehouse"
|
||||
except:
|
||||
pass
|
||||
|
||||
# 创建通信模块
|
||||
self._create_communication_module(bioyond_config)
|
||||
@@ -627,18 +777,22 @@ class BioyondWorkstation(WorkstationBase):
|
||||
self._set_workflow_mappings(bioyond_config["workflow_mappings"])
|
||||
|
||||
# 准备 HTTP 报送接收服务配置(延迟到 post_init 启动)
|
||||
# 从 bioyond_config 中获取,如果没有则使用 HTTP_SERVICE_CONFIG 的默认值
|
||||
# 从 bioyond_config 中的 http_service_config 获取
|
||||
http_service_cfg = bioyond_config.get("http_service_config", {})
|
||||
self._http_service_config = {
|
||||
"host": bioyond_config.get("http_service_host", HTTP_SERVICE_CONFIG["http_service_host"]),
|
||||
"port": bioyond_config.get("http_service_port", HTTP_SERVICE_CONFIG["http_service_port"])
|
||||
"host": http_service_cfg.get("http_service_host", "127.0.0.1"),
|
||||
"port": http_service_cfg.get("http_service_port", 8080)
|
||||
}
|
||||
self.http_service = None # 将在 post_init 中启动
|
||||
self.http_service = None # 将在 post_init 启动
|
||||
self.connection_monitor = None # 将在 post_init 启动
|
||||
|
||||
logger.info(f"Bioyond工作站初始化完成")
|
||||
|
||||
def __del__(self):
|
||||
"""析构函数:清理资源,停止 HTTP 服务"""
|
||||
try:
|
||||
if hasattr(self, 'connection_monitor') and self.connection_monitor:
|
||||
self.connection_monitor.stop()
|
||||
if hasattr(self, 'http_service') and self.http_service is not None:
|
||||
logger.info("正在停止 HTTP 报送服务...")
|
||||
self.http_service.stop()
|
||||
@@ -648,6 +802,13 @@ class BioyondWorkstation(WorkstationBase):
|
||||
def post_init(self, ros_node: ROS2WorkstationNode):
|
||||
self._ros_node = ros_node
|
||||
|
||||
# 启动连接监控
|
||||
try:
|
||||
self.connection_monitor = ConnectionMonitor(self)
|
||||
self.connection_monitor.start()
|
||||
except Exception as e:
|
||||
logger.error(f"启动连接监控失败: {e}")
|
||||
|
||||
# 启动 HTTP 报送接收服务(现在 device_id 已可用)
|
||||
if hasattr(self, '_http_service_config'):
|
||||
try:
|
||||
@@ -688,19 +849,14 @@ class BioyondWorkstation(WorkstationBase):
|
||||
|
||||
def _create_communication_module(self, config: Optional[Dict[str, Any]] = None) -> None:
|
||||
"""创建Bioyond通信模块"""
|
||||
# 创建默认配置
|
||||
default_config = {
|
||||
**API_CONFIG,
|
||||
"workflow_mappings": WORKFLOW_MAPPINGS,
|
||||
"material_type_mappings": MATERIAL_TYPE_MAPPINGS,
|
||||
"warehouse_mapping": WAREHOUSE_MAPPING
|
||||
}
|
||||
|
||||
# 如果传入了 config,合并配置(config 中的值会覆盖默认值)
|
||||
# 直接使用传入的配置,不再使用默认值
|
||||
# 所有配置必须从 JSON 文件中提供
|
||||
if config:
|
||||
self.bioyond_config = {**default_config, **config}
|
||||
self.bioyond_config = config
|
||||
else:
|
||||
self.bioyond_config = default_config
|
||||
# 如果没有配置,使用空字典(会导致后续错误,但这是预期的)
|
||||
self.bioyond_config = {}
|
||||
print("警告: 未提供 bioyond_config,请确保在 JSON 配置文件中提供完整配置")
|
||||
|
||||
self.hardware_interface = BioyondV1RPC(self.bioyond_config)
|
||||
|
||||
@@ -1014,7 +1170,15 @@ class BioyondWorkstation(WorkstationBase):
|
||||
|
||||
workflow_id = self._get_workflow(actual_workflow_name)
|
||||
if workflow_id:
|
||||
self.workflow_sequence.append(workflow_id)
|
||||
# 兼容 BioyondReactionStation 中 workflow_sequence 被重写为 property 的情况
|
||||
if isinstance(self.workflow_sequence, list):
|
||||
self.workflow_sequence.append(workflow_id)
|
||||
elif hasattr(self, "_cached_workflow_sequence") and isinstance(self._cached_workflow_sequence, list):
|
||||
self._cached_workflow_sequence.append(workflow_id)
|
||||
else:
|
||||
print(f"❌ 无法添加工作流: workflow_sequence 类型错误 {type(self.workflow_sequence)}")
|
||||
return False
|
||||
|
||||
print(f"添加工作流到执行顺序: {actual_workflow_name} -> {workflow_id}")
|
||||
return True
|
||||
return False
|
||||
@@ -1215,6 +1379,22 @@ class BioyondWorkstation(WorkstationBase):
|
||||
# TODO: 根据实际业务需求处理步骤完成逻辑
|
||||
# 例如:更新数据库、触发后续流程等
|
||||
|
||||
# 发布任务状态事件 (running/progress update)
|
||||
self._publish_task_status(
|
||||
task_id=data.get('orderCode'), # 使用 OrderCode 作为关联 ID
|
||||
task_code=data.get('orderCode'),
|
||||
task_type="bioyond_step",
|
||||
status="running",
|
||||
progress=0.5, # 步骤完成视为任务进行中
|
||||
result={"step_name": data.get('stepName'), "step_id": data.get('stepId')}
|
||||
)
|
||||
|
||||
# 更新物料信息
|
||||
# 步骤完成后,物料状态可能发生变化(如位置、用量等),触发同步
|
||||
logger.info(f"[步骤完成报送] 触发物料同步...")
|
||||
self.resource_synchronizer.sync_from_external()
|
||||
|
||||
|
||||
return {
|
||||
"processed": True,
|
||||
"step_id": data.get('stepId'),
|
||||
@@ -1249,6 +1429,17 @@ class BioyondWorkstation(WorkstationBase):
|
||||
|
||||
# TODO: 根据实际业务需求处理通量完成逻辑
|
||||
|
||||
# 发布任务状态事件
|
||||
self._publish_task_status(
|
||||
task_id=data.get('orderCode'),
|
||||
task_code=data.get('orderCode'),
|
||||
task_type="bioyond_sample",
|
||||
status="running",
|
||||
progress=0.7,
|
||||
result={"sample_id": data.get('sampleId'), "status": status_desc}
|
||||
)
|
||||
|
||||
|
||||
return {
|
||||
"processed": True,
|
||||
"sample_id": data.get('sampleId'),
|
||||
@@ -1288,6 +1479,32 @@ class BioyondWorkstation(WorkstationBase):
|
||||
# TODO: 根据实际业务需求处理任务完成逻辑
|
||||
# 例如:更新物料库存、生成报表等
|
||||
|
||||
# 映射状态到事件状态
|
||||
event_status = "completed"
|
||||
if str(data.get('status')) in ["-11", "-12"]:
|
||||
event_status = "error"
|
||||
elif str(data.get('status')) == "30":
|
||||
event_status = "completed"
|
||||
else:
|
||||
event_status = "running" # 其他状态视为运行中(或根据实际定义)
|
||||
|
||||
# 发布任务状态事件
|
||||
self._publish_task_status(
|
||||
task_id=data.get('orderCode'),
|
||||
task_code=data.get('orderCode'),
|
||||
task_type="bioyond_order",
|
||||
status=event_status,
|
||||
progress=1.0 if event_status in ["completed", "error"] else 0.9,
|
||||
result={"order_name": data.get('orderName'), "status": status_desc, "materials_count": len(used_materials)}
|
||||
)
|
||||
|
||||
# 更新物料信息
|
||||
# 任务完成后,且状态为完成时,触发同步以更新最终物料状态
|
||||
if event_status == "completed":
|
||||
logger.info(f"[任务完成报送] 触发物料同步...")
|
||||
self.resource_synchronizer.sync_from_external()
|
||||
|
||||
|
||||
return {
|
||||
"processed": True,
|
||||
"order_code": data.get('orderCode'),
|
||||
|
||||
@@ -459,12 +459,12 @@ class WorkstationHTTPHandler(BaseHTTPRequestHandler):
|
||||
# 验证必需字段
|
||||
if 'brand' in request_data:
|
||||
if request_data['brand'] == "bioyond": # 奔曜
|
||||
error_msg = request_data["text"]
|
||||
logger.info(f"收到奔曜错误处理报送: {error_msg}")
|
||||
material_data = request_data["text"]
|
||||
logger.info(f"收到奔曜物料变更报送: {material_data}")
|
||||
return HttpResponse(
|
||||
success=True,
|
||||
message=f"错误处理报送已收到: {error_msg}",
|
||||
acknowledgment_id=f"ERROR_{int(time.time() * 1000)}_{error_msg.get('action_id', 'unknown')}",
|
||||
message=f"物料变更报送已收到: {material_data}",
|
||||
acknowledgment_id=f"MATERIAL_{int(time.time() * 1000)}_{material_data.get('id', 'unknown')}",
|
||||
data=None
|
||||
)
|
||||
else:
|
||||
|
||||
@@ -5,229 +5,6 @@ bioyond_dispensing_station:
|
||||
- bioyond_dispensing_station
|
||||
class:
|
||||
action_value_mappings:
|
||||
auto-brief_step_parameters:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
data: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
data:
|
||||
type: object
|
||||
required:
|
||||
- data
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: brief_step_parameters参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-compute_experiment_design:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
m_tot: '70'
|
||||
ratio: null
|
||||
titration_percent: '0.03'
|
||||
wt_percent: '0.25'
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
m_tot:
|
||||
default: '70'
|
||||
type: string
|
||||
ratio:
|
||||
type: object
|
||||
titration_percent:
|
||||
default: '0.03'
|
||||
type: string
|
||||
wt_percent:
|
||||
default: '0.25'
|
||||
type: string
|
||||
required:
|
||||
- ratio
|
||||
type: object
|
||||
result:
|
||||
properties:
|
||||
feeding_order:
|
||||
items: {}
|
||||
title: Feeding Order
|
||||
type: array
|
||||
return_info:
|
||||
title: Return Info
|
||||
type: string
|
||||
solutions:
|
||||
items: {}
|
||||
title: Solutions
|
||||
type: array
|
||||
solvents:
|
||||
additionalProperties: true
|
||||
title: Solvents
|
||||
type: object
|
||||
titration:
|
||||
additionalProperties: true
|
||||
title: Titration
|
||||
type: object
|
||||
required:
|
||||
- solutions
|
||||
- titration
|
||||
- solvents
|
||||
- feeding_order
|
||||
- return_info
|
||||
title: ComputeExperimentDesignReturn
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: compute_experiment_design参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-process_order_finish_report:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
report_request: null
|
||||
used_materials: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
report_request:
|
||||
type: string
|
||||
used_materials:
|
||||
type: string
|
||||
required:
|
||||
- report_request
|
||||
- used_materials
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: process_order_finish_report参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-project_order_report:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
order_id: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
order_id:
|
||||
type: string
|
||||
required:
|
||||
- order_id
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: project_order_report参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-query_resource_by_name:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
material_name: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
material_name:
|
||||
type: string
|
||||
required:
|
||||
- material_name
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: query_resource_by_name参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-transfer_materials_to_reaction_station:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
target_device_id: null
|
||||
transfer_groups: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
target_device_id:
|
||||
type: string
|
||||
transfer_groups:
|
||||
type: array
|
||||
required:
|
||||
- target_device_id
|
||||
- transfer_groups
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: transfer_materials_to_reaction_station参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-workflow_sample_locations:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
workflow_id: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
workflow_id:
|
||||
type: string
|
||||
required:
|
||||
- workflow_id
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: workflow_sample_locations参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
batch_create_90_10_vial_feeding_tasks:
|
||||
feedback: {}
|
||||
goal:
|
||||
@@ -394,6 +171,99 @@ bioyond_dispensing_station:
|
||||
title: BatchCreateDiamineSolutionTasks
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
compute_experiment_design:
|
||||
feedback: {}
|
||||
goal:
|
||||
m_tot: m_tot
|
||||
ratio: ratio
|
||||
titration_percent: titration_percent
|
||||
wt_percent: wt_percent
|
||||
goal_default:
|
||||
m_tot: '70'
|
||||
ratio: ''
|
||||
titration_percent: '0.03'
|
||||
wt_percent: '0.25'
|
||||
handles:
|
||||
output:
|
||||
- data_key: solutions
|
||||
data_source: executor
|
||||
data_type: array
|
||||
handler_key: solutions
|
||||
io_type: sink
|
||||
label: Solution Data From Python
|
||||
- data_key: titration
|
||||
data_source: executor
|
||||
data_type: object
|
||||
handler_key: titration
|
||||
io_type: sink
|
||||
label: Titration Data From Calculation Node
|
||||
- data_key: solvents
|
||||
data_source: executor
|
||||
data_type: object
|
||||
handler_key: solvents
|
||||
io_type: sink
|
||||
label: Solvents Data From Calculation Node
|
||||
- data_key: feeding_order
|
||||
data_source: executor
|
||||
data_type: array
|
||||
handler_key: feeding_order
|
||||
io_type: sink
|
||||
label: Feeding Order Data From Calculation Node
|
||||
result:
|
||||
feeding_order: feeding_order
|
||||
return_info: return_info
|
||||
solutions: solutions
|
||||
solvents: solvents
|
||||
titration: titration
|
||||
schema:
|
||||
description: 计算实验设计,输出solutions/titration/solvents/feeding_order用于后续节点。
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
m_tot:
|
||||
default: '70'
|
||||
description: 总质量(g)
|
||||
type: string
|
||||
ratio:
|
||||
description: 组分摩尔比的对象,保持输入顺序,如{"MDA":1,"BTDA":1}
|
||||
type: string
|
||||
titration_percent:
|
||||
default: '0.03'
|
||||
description: 滴定比例(10%部分)
|
||||
type: string
|
||||
wt_percent:
|
||||
default: '0.25'
|
||||
description: 目标固含质量分数
|
||||
type: string
|
||||
required:
|
||||
- ratio
|
||||
type: object
|
||||
result:
|
||||
properties:
|
||||
feeding_order:
|
||||
type: array
|
||||
return_info:
|
||||
type: string
|
||||
solutions:
|
||||
type: array
|
||||
solvents:
|
||||
type: object
|
||||
titration:
|
||||
type: object
|
||||
required:
|
||||
- solutions
|
||||
- titration
|
||||
- solvents
|
||||
- feeding_order
|
||||
- return_info
|
||||
title: ComputeExperimentDesign_Result
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: ComputeExperimentDesign
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
create_90_10_vial_feeding_task:
|
||||
feedback: {}
|
||||
goal:
|
||||
@@ -620,6 +490,89 @@ bioyond_dispensing_station:
|
||||
title: DispenStationSolnPrep
|
||||
type: object
|
||||
type: DispenStationSolnPrep
|
||||
scheduler_start:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default: {}
|
||||
handles: {}
|
||||
result:
|
||||
return_info: return_info
|
||||
schema:
|
||||
description: 启动调度器 - 启动Bioyond配液站的任务调度器,开始执行队列中的任务
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties: {}
|
||||
required: []
|
||||
type: object
|
||||
result:
|
||||
properties:
|
||||
return_info:
|
||||
description: 调度器启动结果,成功返回1,失败返回0
|
||||
type: integer
|
||||
required:
|
||||
- return_info
|
||||
title: scheduler_start结果
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: scheduler_start参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
transfer_materials_to_reaction_station:
|
||||
feedback: {}
|
||||
goal:
|
||||
target_device_id: target_device_id
|
||||
transfer_groups: transfer_groups
|
||||
goal_default:
|
||||
target_device_id: ''
|
||||
transfer_groups: ''
|
||||
handles: {}
|
||||
placeholder_keys:
|
||||
target_device_id: unilabos_devices
|
||||
result: {}
|
||||
schema:
|
||||
description: 将配液站完成的物料(溶液、样品等)转移到指定反应站的堆栈库位。支持配置多组转移任务,每组包含物料名称、目标堆栈和目标库位。
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
target_device_id:
|
||||
description: 目标反应站设备ID(从设备列表中选择,所有转移组都使用同一个目标设备)
|
||||
type: string
|
||||
transfer_groups:
|
||||
description: 转移任务组列表,每组包含物料名称、目标堆栈和目标库位,可以添加多组
|
||||
items:
|
||||
properties:
|
||||
materials:
|
||||
description: 物料名称(手动输入,系统将通过RPC查询验证)
|
||||
type: string
|
||||
target_sites:
|
||||
description: 目标库位(手动输入,如"A01")
|
||||
type: string
|
||||
target_stack:
|
||||
description: 目标堆栈名称(从列表选择)
|
||||
enum:
|
||||
- 堆栈1左
|
||||
- 堆栈1右
|
||||
- 站内试剂存放堆栈
|
||||
type: string
|
||||
required:
|
||||
- materials
|
||||
- target_stack
|
||||
- target_sites
|
||||
type: object
|
||||
type: array
|
||||
required:
|
||||
- target_device_id
|
||||
- transfer_groups
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: transfer_materials_to_reaction_station参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
wait_for_multiple_orders_and_get_reports:
|
||||
feedback: {}
|
||||
goal:
|
||||
@@ -688,7 +641,7 @@ bioyond_dispensing_station:
|
||||
title: WaitForMultipleOrdersAndGetReports
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
module: unilabos.devices.workstation.bioyond_studio.dispensing_station:BioyondDispensingStation
|
||||
module: unilabos.devices.workstation.bioyond_studio.dispensing_station.dispensing_station:BioyondDispensingStation
|
||||
status_types: {}
|
||||
type: python
|
||||
config_info: []
|
||||
@@ -699,15 +652,16 @@ bioyond_dispensing_station:
|
||||
config:
|
||||
properties:
|
||||
config:
|
||||
type: string
|
||||
type: object
|
||||
deck:
|
||||
type: string
|
||||
required:
|
||||
- config
|
||||
- deck
|
||||
protocol_type:
|
||||
type: string
|
||||
required: []
|
||||
type: object
|
||||
data:
|
||||
properties: {}
|
||||
required: []
|
||||
type: object
|
||||
model: {}
|
||||
version: 1.0.0
|
||||
|
||||
@@ -638,7 +638,7 @@ liquid_handler:
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: 吸头迭代函数。用于自动管理和切换枪头盒中的吸头,实现批量实验中的吸头自动分配和追踪。该函数监控吸头使用状态,自动切换到下一个可用吸头位置,确保实验流程的连续性。适用于高通量实验、批量处理、自动化流水线等需要大量吸头管理的应用场景。
|
||||
description: 吸头迭代函数。用于自动管理和切换吸头架中的吸头,实现批量实验中的吸头自动分配和追踪。该函数监控吸头使用状态,自动切换到下一个可用吸头位置,确保实验流程的连续性。适用于高通量实验、批量处理、自动化流水线等需要大量吸头管理的应用场景。
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
@@ -712,43 +712,6 @@ liquid_handler:
|
||||
title: set_group参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-set_liquid_from_plate:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
liquid_names: null
|
||||
plate: null
|
||||
volumes: null
|
||||
well_names: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
liquid_names:
|
||||
type: string
|
||||
plate:
|
||||
type: string
|
||||
volumes:
|
||||
type: string
|
||||
well_names:
|
||||
type: string
|
||||
required:
|
||||
- plate
|
||||
- well_names
|
||||
- liquid_names
|
||||
- volumes
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: set_liquid_from_plate参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-set_tiprack:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
@@ -758,7 +721,7 @@ liquid_handler:
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: 枪头盒设置函数。用于配置和初始化液体处理系统的枪头盒信息,包括枪头盒位置、类型、容量等参数。该函数建立吸头资源管理系统,为后续的吸头选择和使用提供基础配置。适用于系统初始化、枪头盒更换、实验配置等需要吸头资源管理的操作场景。
|
||||
description: 吸头架设置函数。用于配置和初始化液体处理系统的吸头架信息,包括吸头架位置、类型、容量等参数。该函数建立吸头资源管理系统,为后续的吸头选择和使用提供基础配置。适用于系统初始化、吸头架更换、实验配置等需要吸头资源管理的操作场景。
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
@@ -4130,43 +4093,32 @@ liquid_handler:
|
||||
- 0
|
||||
handles:
|
||||
input:
|
||||
- data_key: sources
|
||||
- data_key: liquid
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: sources
|
||||
label: sources
|
||||
- data_key: targets
|
||||
data_source: handle
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: targets
|
||||
label: targets
|
||||
- data_key: tip_racks
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: tip_racks
|
||||
label: tip_racks
|
||||
output:
|
||||
- data_key: sources
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: targets
|
||||
label: 转移目标
|
||||
- data_key: tip_racks
|
||||
data_source: handle
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: tip_rack
|
||||
label: 枪头盒
|
||||
label: tip_rack
|
||||
output:
|
||||
- data_key: sources.@flatten
|
||||
data_source: executor
|
||||
- data_key: liquid
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: sources_out
|
||||
label: sources
|
||||
- data_key: targets
|
||||
data_source: handle
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: targets_out
|
||||
label: 移液后目标孔
|
||||
label: targets
|
||||
placeholder_keys:
|
||||
sources: unilabos_resources
|
||||
targets: unilabos_resources
|
||||
@@ -4812,13 +4764,13 @@ liquid_handler.biomek:
|
||||
targets: ''
|
||||
handles:
|
||||
input:
|
||||
- data_key: sources
|
||||
- data_key: liquid
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: sources
|
||||
label: sources
|
||||
output:
|
||||
- data_key: targets
|
||||
- data_key: liquid
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: targets
|
||||
@@ -4971,29 +4923,29 @@ liquid_handler.biomek:
|
||||
volume: 0.0
|
||||
handles:
|
||||
input:
|
||||
- data_key: sources
|
||||
- data_key: liquid
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: sources
|
||||
label: sources
|
||||
- data_key: targets
|
||||
data_source: handle
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: targets
|
||||
label: targets
|
||||
- data_key: tip_racks
|
||||
data_source: handle
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: tip_racks
|
||||
label: tip_racks
|
||||
handler_key: tip_rack
|
||||
label: tip_rack
|
||||
output:
|
||||
- data_key: sources
|
||||
- data_key: liquid
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: sources_out
|
||||
label: sources
|
||||
- data_key: targets
|
||||
data_source: handle
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: targets_out
|
||||
label: targets
|
||||
@@ -5162,32 +5114,19 @@ liquid_handler.biomek:
|
||||
- 0
|
||||
handles:
|
||||
input:
|
||||
- data_key: sources
|
||||
- data_key: liquid
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: sources
|
||||
label: sources
|
||||
- data_key: targets
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: targets
|
||||
label: targets
|
||||
- data_key: tip_racks
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: tip_racks
|
||||
label: tip_racks
|
||||
handler_key: liquid-input
|
||||
io_type: target
|
||||
label: Liquid Input
|
||||
output:
|
||||
- data_key: sources
|
||||
data_source: handle
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: sources_out
|
||||
label: sources
|
||||
- data_key: targets
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: targets_out
|
||||
label: targets
|
||||
handler_key: liquid-output
|
||||
io_type: source
|
||||
label: Liquid Output
|
||||
placeholder_keys:
|
||||
sources: unilabos_resources
|
||||
targets: unilabos_resources
|
||||
@@ -7665,43 +7604,6 @@ liquid_handler.prcxi:
|
||||
title: iter_tips参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-magnetic_action:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
height: null
|
||||
is_wait: null
|
||||
module_no: null
|
||||
time: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
height:
|
||||
type: integer
|
||||
is_wait:
|
||||
type: boolean
|
||||
module_no:
|
||||
type: integer
|
||||
time:
|
||||
type: integer
|
||||
required:
|
||||
- time
|
||||
- module_no
|
||||
- height
|
||||
- is_wait
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: magnetic_action参数
|
||||
type: object
|
||||
type: UniLabJsonCommandAsync
|
||||
auto-move_to:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
@@ -7735,31 +7637,6 @@ liquid_handler.prcxi:
|
||||
title: move_to参数
|
||||
type: object
|
||||
type: UniLabJsonCommandAsync
|
||||
auto-plr_pos_to_prcxi:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
resource: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
resource:
|
||||
type: object
|
||||
required:
|
||||
- resource
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: plr_pos_to_prcxi参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-post_init:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
@@ -7880,47 +7757,6 @@ liquid_handler.prcxi:
|
||||
title: shaker_action参数
|
||||
type: object
|
||||
type: UniLabJsonCommandAsync
|
||||
auto-shaking_incubation_action:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
amplitude: null
|
||||
is_wait: null
|
||||
module_no: null
|
||||
temperature: null
|
||||
time: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
amplitude:
|
||||
type: integer
|
||||
is_wait:
|
||||
type: boolean
|
||||
module_no:
|
||||
type: integer
|
||||
temperature:
|
||||
type: integer
|
||||
time:
|
||||
type: integer
|
||||
required:
|
||||
- time
|
||||
- module_no
|
||||
- amplitude
|
||||
- is_wait
|
||||
- temperature
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: shaking_incubation_action参数
|
||||
type: object
|
||||
type: UniLabJsonCommandAsync
|
||||
auto-touch_tip:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
@@ -8655,19 +8491,7 @@ liquid_handler.prcxi:
|
||||
z: 0.0
|
||||
sample_id: ''
|
||||
type: ''
|
||||
handles:
|
||||
input:
|
||||
- data_key: plate
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: plate
|
||||
label: plate
|
||||
output:
|
||||
- data_key: plate
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: plate
|
||||
label: plate
|
||||
handles: {}
|
||||
placeholder_keys:
|
||||
plate: unilabos_resources
|
||||
to: unilabos_resources
|
||||
@@ -9460,13 +9284,7 @@ liquid_handler.prcxi:
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: input_wells
|
||||
label: 待设定液体孔
|
||||
output:
|
||||
- data_key: wells.@flatten
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: output_wells
|
||||
label: 已设定液体孔
|
||||
label: InputWells
|
||||
placeholder_keys:
|
||||
wells: unilabos_resources
|
||||
result: {}
|
||||
@@ -9582,352 +9400,6 @@ liquid_handler.prcxi:
|
||||
title: LiquidHandlerSetLiquid
|
||||
type: object
|
||||
type: LiquidHandlerSetLiquid
|
||||
set_liquid_from_plate:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
liquid_names: null
|
||||
plate: null
|
||||
volumes: null
|
||||
well_names: null
|
||||
handles:
|
||||
input:
|
||||
- data_key: '@this.0@@@plate'
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: input_plate
|
||||
label: 待设定液体板
|
||||
output:
|
||||
- data_key: plate.@flatten
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: output_plate
|
||||
label: 已设定液体板
|
||||
- data_key: wells.@flatten
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: output_wells
|
||||
label: 已设定液体孔
|
||||
- data_key: volumes
|
||||
data_source: executor
|
||||
data_type: number_array
|
||||
handler_key: output_volumes
|
||||
label: 各孔设定体积
|
||||
placeholder_keys:
|
||||
plate: unilabos_resources
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
liquid_names:
|
||||
items:
|
||||
type: string
|
||||
type: array
|
||||
plate:
|
||||
properties:
|
||||
category:
|
||||
type: string
|
||||
children:
|
||||
items:
|
||||
type: string
|
||||
type: array
|
||||
config:
|
||||
type: string
|
||||
data:
|
||||
type: string
|
||||
id:
|
||||
type: string
|
||||
name:
|
||||
type: string
|
||||
parent:
|
||||
type: string
|
||||
pose:
|
||||
properties:
|
||||
orientation:
|
||||
properties:
|
||||
w:
|
||||
type: number
|
||||
x:
|
||||
type: number
|
||||
y:
|
||||
type: number
|
||||
z:
|
||||
type: number
|
||||
required:
|
||||
- x
|
||||
- y
|
||||
- z
|
||||
- w
|
||||
title: orientation
|
||||
type: object
|
||||
position:
|
||||
properties:
|
||||
x:
|
||||
type: number
|
||||
y:
|
||||
type: number
|
||||
z:
|
||||
type: number
|
||||
required:
|
||||
- x
|
||||
- y
|
||||
- z
|
||||
title: position
|
||||
type: object
|
||||
required:
|
||||
- position
|
||||
- orientation
|
||||
title: pose
|
||||
type: object
|
||||
sample_id:
|
||||
type: string
|
||||
type:
|
||||
type: string
|
||||
required:
|
||||
- id
|
||||
- name
|
||||
- sample_id
|
||||
- children
|
||||
- parent
|
||||
- type
|
||||
- category
|
||||
- pose
|
||||
- config
|
||||
- data
|
||||
title: plate
|
||||
type: object
|
||||
volumes:
|
||||
items:
|
||||
type: number
|
||||
type: array
|
||||
well_names:
|
||||
items:
|
||||
type: string
|
||||
type: array
|
||||
required:
|
||||
- plate
|
||||
- well_names
|
||||
- liquid_names
|
||||
- volumes
|
||||
type: object
|
||||
result:
|
||||
$defs:
|
||||
ResourceDict:
|
||||
properties:
|
||||
class:
|
||||
description: Resource class name
|
||||
title: Class
|
||||
type: string
|
||||
config:
|
||||
additionalProperties: true
|
||||
description: Resource configuration
|
||||
title: Config
|
||||
type: object
|
||||
data:
|
||||
additionalProperties: true
|
||||
description: 'Resource data, eg: container liquid data'
|
||||
title: Data
|
||||
type: object
|
||||
description:
|
||||
default: ''
|
||||
description: Resource description
|
||||
title: Description
|
||||
type: string
|
||||
extra:
|
||||
additionalProperties: true
|
||||
description: 'Extra data, eg: slot index'
|
||||
title: Extra
|
||||
type: object
|
||||
icon:
|
||||
default: ''
|
||||
description: Resource icon
|
||||
title: Icon
|
||||
type: string
|
||||
id:
|
||||
description: Resource ID
|
||||
title: Id
|
||||
type: string
|
||||
model:
|
||||
additionalProperties: true
|
||||
description: Resource model
|
||||
title: Model
|
||||
type: object
|
||||
name:
|
||||
description: Resource name
|
||||
title: Name
|
||||
type: string
|
||||
parent:
|
||||
anyOf:
|
||||
- $ref: '#/$defs/ResourceDict'
|
||||
- type: 'null'
|
||||
default: null
|
||||
description: Parent resource object
|
||||
parent_uuid:
|
||||
anyOf:
|
||||
- type: string
|
||||
- type: 'null'
|
||||
default: null
|
||||
description: Parent resource uuid
|
||||
title: Parent Uuid
|
||||
pose:
|
||||
$ref: '#/$defs/ResourceDictPosition'
|
||||
description: Resource position
|
||||
schema:
|
||||
additionalProperties: true
|
||||
description: Resource schema
|
||||
title: Schema
|
||||
type: object
|
||||
type:
|
||||
anyOf:
|
||||
- const: device
|
||||
type: string
|
||||
- type: string
|
||||
description: Resource type
|
||||
title: Type
|
||||
uuid:
|
||||
description: Resource UUID
|
||||
title: Uuid
|
||||
type: string
|
||||
required:
|
||||
- id
|
||||
- uuid
|
||||
- name
|
||||
- type
|
||||
- class
|
||||
- config
|
||||
- data
|
||||
- extra
|
||||
title: ResourceDict
|
||||
type: object
|
||||
ResourceDictPosition:
|
||||
properties:
|
||||
cross_section_type:
|
||||
default: rectangle
|
||||
description: Cross section type
|
||||
enum:
|
||||
- rectangle
|
||||
- circle
|
||||
- rounded_rectangle
|
||||
title: Cross Section Type
|
||||
type: string
|
||||
layout:
|
||||
default: x-y
|
||||
description: Resource layout
|
||||
enum:
|
||||
- 2d
|
||||
- x-y
|
||||
- z-y
|
||||
- x-z
|
||||
title: Layout
|
||||
type: string
|
||||
position:
|
||||
$ref: '#/$defs/ResourceDictPositionObject'
|
||||
description: Resource position
|
||||
position3d:
|
||||
$ref: '#/$defs/ResourceDictPositionObject'
|
||||
description: Resource position in 3D space
|
||||
rotation:
|
||||
$ref: '#/$defs/ResourceDictPositionObject'
|
||||
description: Resource rotation
|
||||
scale:
|
||||
$ref: '#/$defs/ResourceDictPositionScale'
|
||||
description: Resource scale
|
||||
size:
|
||||
$ref: '#/$defs/ResourceDictPositionSize'
|
||||
description: Resource size
|
||||
title: ResourceDictPosition
|
||||
type: object
|
||||
ResourceDictPositionObject:
|
||||
properties:
|
||||
x:
|
||||
default: 0.0
|
||||
description: X coordinate
|
||||
title: X
|
||||
type: number
|
||||
y:
|
||||
default: 0.0
|
||||
description: Y coordinate
|
||||
title: Y
|
||||
type: number
|
||||
z:
|
||||
default: 0.0
|
||||
description: Z coordinate
|
||||
title: Z
|
||||
type: number
|
||||
title: ResourceDictPositionObject
|
||||
type: object
|
||||
ResourceDictPositionScale:
|
||||
properties:
|
||||
x:
|
||||
default: 0.0
|
||||
description: x scale
|
||||
title: X
|
||||
type: number
|
||||
y:
|
||||
default: 0.0
|
||||
description: y scale
|
||||
title: Y
|
||||
type: number
|
||||
z:
|
||||
default: 0.0
|
||||
description: z scale
|
||||
title: Z
|
||||
type: number
|
||||
title: ResourceDictPositionScale
|
||||
type: object
|
||||
ResourceDictPositionSize:
|
||||
properties:
|
||||
depth:
|
||||
default: 0.0
|
||||
description: Depth
|
||||
title: Depth
|
||||
type: number
|
||||
height:
|
||||
default: 0.0
|
||||
description: Height
|
||||
title: Height
|
||||
type: number
|
||||
width:
|
||||
default: 0.0
|
||||
description: Width
|
||||
title: Width
|
||||
type: number
|
||||
title: ResourceDictPositionSize
|
||||
type: object
|
||||
properties:
|
||||
plate:
|
||||
items:
|
||||
items:
|
||||
$ref: '#/$defs/ResourceDict'
|
||||
type: array
|
||||
title: Plate
|
||||
type: array
|
||||
volumes:
|
||||
items:
|
||||
type: number
|
||||
title: Volumes
|
||||
type: array
|
||||
wells:
|
||||
items:
|
||||
items:
|
||||
$ref: '#/$defs/ResourceDict'
|
||||
type: array
|
||||
title: Wells
|
||||
type: array
|
||||
required:
|
||||
- plate
|
||||
- wells
|
||||
- volumes
|
||||
title: SetLiquidFromPlateReturn
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: set_liquid_from_plate参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
set_tiprack:
|
||||
feedback: {}
|
||||
goal:
|
||||
@@ -10273,32 +9745,32 @@ liquid_handler.prcxi:
|
||||
- 0
|
||||
handles:
|
||||
input:
|
||||
- data_key: sources
|
||||
- data_key: liquid
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: sources
|
||||
label: sources
|
||||
- data_key: targets
|
||||
data_source: handle
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: targets
|
||||
label: targets
|
||||
- data_key: tip_racks
|
||||
data_source: handle
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: tip_racks
|
||||
label: tip_racks
|
||||
handler_key: tip_rack
|
||||
label: tip_rack
|
||||
output:
|
||||
- data_key: sources
|
||||
- data_key: liquid
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: sources_out
|
||||
label: sources
|
||||
- data_key: targets
|
||||
data_source: handle
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
data_type: resource
|
||||
handler_key: targets_out
|
||||
label: 移液后目标孔
|
||||
label: targets
|
||||
placeholder_keys:
|
||||
sources: unilabos_resources
|
||||
targets: unilabos_resources
|
||||
@@ -10679,12 +10151,6 @@ liquid_handler.prcxi:
|
||||
type: string
|
||||
deck:
|
||||
type: object
|
||||
deck_y:
|
||||
default: 400
|
||||
type: string
|
||||
deck_z:
|
||||
default: 300
|
||||
type: string
|
||||
host:
|
||||
type: string
|
||||
is_9320:
|
||||
@@ -10695,44 +10161,17 @@ liquid_handler.prcxi:
|
||||
type: string
|
||||
port:
|
||||
type: integer
|
||||
rail_interval:
|
||||
default: 0
|
||||
type: string
|
||||
rail_nums:
|
||||
default: 4
|
||||
type: string
|
||||
rail_width:
|
||||
default: 27.5
|
||||
type: string
|
||||
setup:
|
||||
default: true
|
||||
type: string
|
||||
simulator:
|
||||
default: false
|
||||
type: string
|
||||
start_rail:
|
||||
default: 2
|
||||
type: string
|
||||
step_mode:
|
||||
default: false
|
||||
type: string
|
||||
timeout:
|
||||
type: number
|
||||
x_increase:
|
||||
default: -0.003636
|
||||
type: string
|
||||
x_offset:
|
||||
default: -0.8
|
||||
type: string
|
||||
xy_coupling:
|
||||
default: -0.0045
|
||||
type: string
|
||||
y_increase:
|
||||
default: -0.003636
|
||||
type: string
|
||||
y_offset:
|
||||
default: -37.98
|
||||
type: string
|
||||
required:
|
||||
- deck
|
||||
- host
|
||||
|
||||
@@ -4,213 +4,88 @@ reaction_station.bioyond:
|
||||
- reaction_station_bioyond
|
||||
class:
|
||||
action_value_mappings:
|
||||
auto-create_order:
|
||||
add_time_constraint:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal:
|
||||
duration: duration
|
||||
end_point: end_point
|
||||
end_step_key: end_step_key
|
||||
start_point: start_point
|
||||
start_step_key: start_step_key
|
||||
goal_default:
|
||||
json_str: null
|
||||
duration: 0
|
||||
end_point: 0
|
||||
end_step_key: ''
|
||||
start_point: 0
|
||||
start_step_key: ''
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
description: 添加时间约束 - 在两个工作流之间添加时间约束
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
json_str:
|
||||
type: string
|
||||
required:
|
||||
- json_str
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: create_order参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-hard_delete_merged_workflows:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
workflow_ids: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
workflow_ids:
|
||||
items:
|
||||
type: string
|
||||
type: array
|
||||
required:
|
||||
- workflow_ids
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: hard_delete_merged_workflows参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-merge_workflow_with_parameters:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
json_str: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
json_str:
|
||||
type: string
|
||||
required:
|
||||
- json_str
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: merge_workflow_with_parameters参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-process_temperature_cutoff_report:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
report_request: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
report_request:
|
||||
type: string
|
||||
required:
|
||||
- report_request
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: process_temperature_cutoff_report参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-process_web_workflows:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
web_workflow_json: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
web_workflow_json:
|
||||
type: string
|
||||
required:
|
||||
- web_workflow_json
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: process_web_workflows参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-skip_titration_steps:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
preintake_id: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
preintake_id:
|
||||
type: string
|
||||
required:
|
||||
- preintake_id
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: skip_titration_steps参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-wait_for_multiple_orders_and_get_reports:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
batch_create_result: null
|
||||
check_interval: 10
|
||||
timeout: 7200
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
batch_create_result:
|
||||
type: string
|
||||
check_interval:
|
||||
default: 10
|
||||
type: integer
|
||||
timeout:
|
||||
default: 7200
|
||||
duration:
|
||||
description: 时间(秒)
|
||||
type: integer
|
||||
end_point:
|
||||
default: Start
|
||||
description: 终点计时点 (Start=开始前, End=结束后)
|
||||
enum:
|
||||
- Start
|
||||
- End
|
||||
type: string
|
||||
end_step_key:
|
||||
description: 终点步骤Key (可选, 默认为空则自动选择)
|
||||
type: string
|
||||
start_point:
|
||||
default: Start
|
||||
description: 起点计时点 (Start=开始前, End=结束后)
|
||||
enum:
|
||||
- Start
|
||||
- End
|
||||
type: string
|
||||
start_step_key:
|
||||
description: 起点步骤Key (例如 "feeding", "liquid", 可选, 默认为空则自动选择)
|
||||
type: string
|
||||
required:
|
||||
- duration
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: add_time_constraint参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
clean_all_server_workflows:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default: {}
|
||||
handles: {}
|
||||
result:
|
||||
code: code
|
||||
message: message
|
||||
schema:
|
||||
description: 清空服务端所有非核心工作流 (保留核心流程)
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties: {}
|
||||
required: []
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: wait_for_multiple_orders_and_get_reports参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-workflow_step_query:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
workflow_id: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
result:
|
||||
properties:
|
||||
workflow_id:
|
||||
code:
|
||||
description: 操作结果代码(1表示成功)
|
||||
type: integer
|
||||
message:
|
||||
description: 结果描述
|
||||
type: string
|
||||
required:
|
||||
- workflow_id
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: workflow_step_query参数
|
||||
title: clean_all_server_workflows参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
drip_back:
|
||||
@@ -247,13 +122,19 @@ reaction_station.bioyond:
|
||||
description: 观察时间(分钟)
|
||||
type: string
|
||||
titration_type:
|
||||
description: 是否滴定(1=否, 2=是)
|
||||
description: 是否滴定(NO=否, YES=是)
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
torque_variation:
|
||||
description: 是否观察 (1=否, 2=是)
|
||||
description: 是否观察 (NO=否, YES=是)
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
volume:
|
||||
description: 分液公式(μL)
|
||||
description: 分液公式(mL)
|
||||
type: string
|
||||
required:
|
||||
- volume
|
||||
@@ -353,13 +234,19 @@ reaction_station.bioyond:
|
||||
description: 观察时间(分钟)
|
||||
type: string
|
||||
titration_type:
|
||||
description: 是否滴定(1=否, 2=是)
|
||||
description: 是否滴定(NO=否, YES=是)
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
torque_variation:
|
||||
description: 是否观察 (1=否, 2=是)
|
||||
description: 是否观察 (NO=否, YES=是)
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
volume:
|
||||
description: 分液公式(μL)
|
||||
description: 分液公式(mL)
|
||||
type: string
|
||||
required:
|
||||
- volume
|
||||
@@ -403,7 +290,7 @@ reaction_station.bioyond:
|
||||
label: Solvents Data From Calculation Node
|
||||
result: {}
|
||||
schema:
|
||||
description: 液体投料-溶剂。可以直接提供volume(μL),或通过solvents对象自动从additional_solvent(mL)计算volume。
|
||||
description: 液体投料-溶剂。可以直接提供volume(mL),或通过solvents对象自动从additional_solvent(mL)计算volume。
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
@@ -423,15 +310,21 @@ reaction_station.bioyond:
|
||||
description: 观察时间(分钟),默认360
|
||||
type: string
|
||||
titration_type:
|
||||
default: '1'
|
||||
description: 是否滴定(1=否, 2=是),默认1
|
||||
default: 'NO'
|
||||
description: 是否滴定(NO=否, YES=是),默认NO
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
torque_variation:
|
||||
default: '2'
|
||||
description: 是否观察 (1=否, 2=是),默认2
|
||||
default: 'YES'
|
||||
description: 是否观察 (NO=否, YES=是),默认YES
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
volume:
|
||||
description: 分液量(μL)。可直接提供,或通过solvents参数自动计算
|
||||
description: 分液量(mL)。可直接提供,或通过solvents参数自动计算
|
||||
type: string
|
||||
required:
|
||||
- assign_material_name
|
||||
@@ -504,15 +397,21 @@ reaction_station.bioyond:
|
||||
description: 观察时间(分钟),默认90
|
||||
type: string
|
||||
titration_type:
|
||||
default: '2'
|
||||
description: 是否滴定(1=否, 2=是),默认2
|
||||
default: 'YES'
|
||||
description: 是否滴定(NO=否, YES=是),默认YES
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
torque_variation:
|
||||
default: '2'
|
||||
description: 是否观察 (1=否, 2=是),默认2
|
||||
default: 'YES'
|
||||
description: 是否观察 (NO=否, YES=是),默认YES
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
volume_formula:
|
||||
description: 分液公式(μL)。可直接提供固定公式,或留空由系统根据x_value、feeding_order_data、extracted_actuals自动生成
|
||||
description: 分液公式(mL)。可直接提供固定公式,或留空由系统根据x_value、feeding_order_data、extracted_actuals自动生成
|
||||
type: string
|
||||
x_value:
|
||||
description: 公式中的x值,手工输入,格式为"{{1-2-3}}"(包含双花括号)。用于自动公式计算
|
||||
@@ -560,13 +459,19 @@ reaction_station.bioyond:
|
||||
description: 观察时间(分钟)
|
||||
type: string
|
||||
titration_type:
|
||||
description: 是否滴定(1=否, 2=是)
|
||||
description: 是否滴定(NO=否, YES=是)
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
torque_variation:
|
||||
description: 是否观察 (1=否, 2=是)
|
||||
description: 是否观察 (NO=否, YES=是)
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
volume_formula:
|
||||
description: 分液公式(μL)
|
||||
description: 分液公式(mL)
|
||||
type: string
|
||||
required:
|
||||
- volume_formula
|
||||
@@ -680,6 +585,35 @@ reaction_station.bioyond:
|
||||
title: reactor_taken_out参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
scheduler_start:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default: {}
|
||||
handles: {}
|
||||
result:
|
||||
return_info: return_info
|
||||
schema:
|
||||
description: 启动调度器 - 启动Bioyond工作站的任务调度器,开始执行队列中的任务
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties: {}
|
||||
required: []
|
||||
type: object
|
||||
result:
|
||||
properties:
|
||||
return_info:
|
||||
description: 调度器启动结果,成功返回1,失败返回0
|
||||
type: integer
|
||||
required:
|
||||
- return_info
|
||||
title: scheduler_start结果
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: scheduler_start参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
solid_feeding_vials:
|
||||
feedback: {}
|
||||
goal:
|
||||
@@ -706,7 +640,11 @@ reaction_station.bioyond:
|
||||
description: 物料名称(用于获取试剂瓶位ID)
|
||||
type: string
|
||||
material_id:
|
||||
description: 粉末类型ID,1=盐(21分钟),2=面粉(27分钟),3=BTDA(38分钟)
|
||||
description: 粉末类型ID,Salt=盐(21分钟),Flour=面粉(27分钟),BTDA=BTDA(38分钟)
|
||||
enum:
|
||||
- Salt
|
||||
- Flour
|
||||
- BTDA
|
||||
type: string
|
||||
temperature:
|
||||
description: 温度设定(°C)
|
||||
@@ -715,7 +653,10 @@ reaction_station.bioyond:
|
||||
description: 观察时间(分钟)
|
||||
type: string
|
||||
torque_variation:
|
||||
description: 是否观察 (1=否, 2=是)
|
||||
description: 是否观察 (NO=否, YES=是)
|
||||
enum:
|
||||
- 'NO'
|
||||
- 'YES'
|
||||
type: string
|
||||
required:
|
||||
- assign_material_name
|
||||
@@ -730,9 +671,19 @@ reaction_station.bioyond:
|
||||
title: solid_feeding_vials参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
module: unilabos.devices.workstation.bioyond_studio.reaction_station:BioyondReactionStation
|
||||
module: unilabos.devices.workstation.bioyond_studio.reaction_station.reaction_station:BioyondReactionStation
|
||||
protocol_type: []
|
||||
status_types:
|
||||
average_viscosity: Float64
|
||||
force: Float64
|
||||
in_temperature: Float64
|
||||
out_temperature: Float64
|
||||
pt100_temperature: Float64
|
||||
sensor_average_temperature: Float64
|
||||
setting_temperature: Float64
|
||||
speed: Float64
|
||||
target_temperature: Float64
|
||||
viscosity: Float64
|
||||
workflow_sequence: String
|
||||
type: python
|
||||
config_info: []
|
||||
@@ -765,34 +716,19 @@ reaction_station.reactor:
|
||||
- reactor
|
||||
- reaction_station_bioyond
|
||||
class:
|
||||
action_value_mappings:
|
||||
auto-update_metrics:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
payload: null
|
||||
handles: {}
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: ''
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
payload:
|
||||
type: object
|
||||
required:
|
||||
- payload
|
||||
type: object
|
||||
result: {}
|
||||
required:
|
||||
- goal
|
||||
title: update_metrics参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
module: unilabos.devices.workstation.bioyond_studio.reaction_station:BioyondReactor
|
||||
status_types: {}
|
||||
action_value_mappings: {}
|
||||
module: unilabos.devices.workstation.bioyond_studio.reaction_station.reaction_station:BioyondReactor
|
||||
status_types:
|
||||
average_viscosity: Float64
|
||||
force: Float64
|
||||
in_temperature: Float64
|
||||
out_temperature: Float64
|
||||
pt100_temperature: Float64
|
||||
sensor_average_temperature: Float64
|
||||
setting_temperature: Float64
|
||||
speed: Float64
|
||||
target_temperature: Float64
|
||||
viscosity: Float64
|
||||
type: python
|
||||
config_info: []
|
||||
description: 反应站子设备-反应器
|
||||
|
||||
@@ -5792,481 +5792,3 @@ virtual_vacuum_pump:
|
||||
- status
|
||||
type: object
|
||||
version: 1.0.0
|
||||
virtual_workbench:
|
||||
category:
|
||||
- virtual_device
|
||||
class:
|
||||
action_value_mappings:
|
||||
auto-move_to_heating_station:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
material_number: null
|
||||
handles:
|
||||
input:
|
||||
- data_key: material_number
|
||||
data_source: handle
|
||||
data_type: workbench_material
|
||||
handler_key: material_input
|
||||
label: 物料编号
|
||||
output:
|
||||
- data_key: station_id
|
||||
data_source: executor
|
||||
data_type: workbench_station
|
||||
handler_key: heating_station_output
|
||||
label: 加热台ID
|
||||
- data_key: material_number
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: material_number_output
|
||||
label: 物料编号
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: 将物料从An位置移动到空闲加热台,返回分配的加热台ID
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
material_number:
|
||||
description: 物料编号,1-5,物料ID自动生成为A{n}
|
||||
type: integer
|
||||
required:
|
||||
- material_number
|
||||
type: object
|
||||
result:
|
||||
$defs:
|
||||
LabSample:
|
||||
properties:
|
||||
extra:
|
||||
additionalProperties: true
|
||||
title: Extra
|
||||
type: object
|
||||
oss_path:
|
||||
title: Oss Path
|
||||
type: string
|
||||
sample_uuid:
|
||||
title: Sample Uuid
|
||||
type: string
|
||||
required:
|
||||
- sample_uuid
|
||||
- oss_path
|
||||
- extra
|
||||
title: LabSample
|
||||
type: object
|
||||
description: move_to_heating_station 返回类型
|
||||
properties:
|
||||
material_id:
|
||||
title: Material Id
|
||||
type: string
|
||||
material_number:
|
||||
title: Material Number
|
||||
type: integer
|
||||
message:
|
||||
title: Message
|
||||
type: string
|
||||
station_id:
|
||||
description: 分配的加热台ID
|
||||
title: Station Id
|
||||
type: integer
|
||||
success:
|
||||
title: Success
|
||||
type: boolean
|
||||
unilabos_samples:
|
||||
items:
|
||||
$ref: '#/$defs/LabSample'
|
||||
title: Unilabos Samples
|
||||
type: array
|
||||
required:
|
||||
- success
|
||||
- station_id
|
||||
- material_id
|
||||
- material_number
|
||||
- message
|
||||
- unilabos_samples
|
||||
title: MoveToHeatingStationResult
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: move_to_heating_station参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-move_to_output:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
material_number: null
|
||||
station_id: null
|
||||
handles:
|
||||
input:
|
||||
- data_key: station_id
|
||||
data_source: handle
|
||||
data_type: workbench_station
|
||||
handler_key: output_station_input
|
||||
label: 加热台ID
|
||||
- data_key: material_number
|
||||
data_source: handle
|
||||
data_type: workbench_material
|
||||
handler_key: output_material_input
|
||||
label: 物料编号
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: 将物料从加热台移动到输出位置Cn
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
material_number:
|
||||
description: 物料编号,用于确定输出位置Cn
|
||||
type: integer
|
||||
station_id:
|
||||
description: 加热台ID,1-3,从上一节点传入
|
||||
type: integer
|
||||
required:
|
||||
- station_id
|
||||
- material_number
|
||||
type: object
|
||||
result:
|
||||
$defs:
|
||||
LabSample:
|
||||
properties:
|
||||
extra:
|
||||
additionalProperties: true
|
||||
title: Extra
|
||||
type: object
|
||||
oss_path:
|
||||
title: Oss Path
|
||||
type: string
|
||||
sample_uuid:
|
||||
title: Sample Uuid
|
||||
type: string
|
||||
required:
|
||||
- sample_uuid
|
||||
- oss_path
|
||||
- extra
|
||||
title: LabSample
|
||||
type: object
|
||||
description: move_to_output 返回类型
|
||||
properties:
|
||||
material_id:
|
||||
title: Material Id
|
||||
type: string
|
||||
station_id:
|
||||
title: Station Id
|
||||
type: integer
|
||||
success:
|
||||
title: Success
|
||||
type: boolean
|
||||
unilabos_samples:
|
||||
items:
|
||||
$ref: '#/$defs/LabSample'
|
||||
title: Unilabos Samples
|
||||
type: array
|
||||
required:
|
||||
- success
|
||||
- station_id
|
||||
- material_id
|
||||
- unilabos_samples
|
||||
title: MoveToOutputResult
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: move_to_output参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-prepare_materials:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
count: 5
|
||||
handles:
|
||||
output:
|
||||
- data_key: material_1
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: channel_1
|
||||
label: 实验1
|
||||
- data_key: material_2
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: channel_2
|
||||
label: 实验2
|
||||
- data_key: material_3
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: channel_3
|
||||
label: 实验3
|
||||
- data_key: material_4
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: channel_4
|
||||
label: 实验4
|
||||
- data_key: material_5
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: channel_5
|
||||
label: 实验5
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: 批量准备物料 - 虚拟起始节点,生成A1-A5物料,输出5个handle供后续节点使用
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
count:
|
||||
default: 5
|
||||
description: 待生成的物料数量,默认5 (生成 A1-A5)
|
||||
type: integer
|
||||
required: []
|
||||
type: object
|
||||
result:
|
||||
$defs:
|
||||
LabSample:
|
||||
properties:
|
||||
extra:
|
||||
additionalProperties: true
|
||||
title: Extra
|
||||
type: object
|
||||
oss_path:
|
||||
title: Oss Path
|
||||
type: string
|
||||
sample_uuid:
|
||||
title: Sample Uuid
|
||||
type: string
|
||||
required:
|
||||
- sample_uuid
|
||||
- oss_path
|
||||
- extra
|
||||
title: LabSample
|
||||
type: object
|
||||
description: prepare_materials 返回类型 - 批量准备物料
|
||||
properties:
|
||||
count:
|
||||
title: Count
|
||||
type: integer
|
||||
material_1:
|
||||
title: Material 1
|
||||
type: integer
|
||||
material_2:
|
||||
title: Material 2
|
||||
type: integer
|
||||
material_3:
|
||||
title: Material 3
|
||||
type: integer
|
||||
material_4:
|
||||
title: Material 4
|
||||
type: integer
|
||||
material_5:
|
||||
title: Material 5
|
||||
type: integer
|
||||
message:
|
||||
title: Message
|
||||
type: string
|
||||
success:
|
||||
title: Success
|
||||
type: boolean
|
||||
unilabos_samples:
|
||||
items:
|
||||
$ref: '#/$defs/LabSample'
|
||||
title: Unilabos Samples
|
||||
type: array
|
||||
required:
|
||||
- success
|
||||
- count
|
||||
- material_1
|
||||
- material_2
|
||||
- material_3
|
||||
- material_4
|
||||
- material_5
|
||||
- message
|
||||
- unilabos_samples
|
||||
title: PrepareMaterialsResult
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: prepare_materials参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-start_heating:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
material_number: null
|
||||
station_id: null
|
||||
handles:
|
||||
input:
|
||||
- data_key: station_id
|
||||
data_source: handle
|
||||
data_type: workbench_station
|
||||
handler_key: station_id_input
|
||||
label: 加热台ID
|
||||
- data_key: material_number
|
||||
data_source: handle
|
||||
data_type: workbench_material
|
||||
handler_key: material_number_input
|
||||
label: 物料编号
|
||||
output:
|
||||
- data_key: station_id
|
||||
data_source: executor
|
||||
data_type: workbench_station
|
||||
handler_key: heating_done_station
|
||||
label: 加热完成-加热台ID
|
||||
- data_key: material_number
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: heating_done_material
|
||||
label: 加热完成-物料编号
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: 启动指定加热台的加热程序
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
material_number:
|
||||
description: 物料编号,从上一节点传入
|
||||
type: integer
|
||||
station_id:
|
||||
description: 加热台ID,1-3,从上一节点传入
|
||||
type: integer
|
||||
required:
|
||||
- station_id
|
||||
- material_number
|
||||
type: object
|
||||
result:
|
||||
$defs:
|
||||
LabSample:
|
||||
properties:
|
||||
extra:
|
||||
additionalProperties: true
|
||||
title: Extra
|
||||
type: object
|
||||
oss_path:
|
||||
title: Oss Path
|
||||
type: string
|
||||
sample_uuid:
|
||||
title: Sample Uuid
|
||||
type: string
|
||||
required:
|
||||
- sample_uuid
|
||||
- oss_path
|
||||
- extra
|
||||
title: LabSample
|
||||
type: object
|
||||
description: start_heating 返回类型
|
||||
properties:
|
||||
material_id:
|
||||
title: Material Id
|
||||
type: string
|
||||
material_number:
|
||||
title: Material Number
|
||||
type: integer
|
||||
message:
|
||||
title: Message
|
||||
type: string
|
||||
station_id:
|
||||
title: Station Id
|
||||
type: integer
|
||||
success:
|
||||
title: Success
|
||||
type: boolean
|
||||
unilabos_samples:
|
||||
items:
|
||||
$ref: '#/$defs/LabSample'
|
||||
title: Unilabos Samples
|
||||
type: array
|
||||
required:
|
||||
- success
|
||||
- station_id
|
||||
- material_id
|
||||
- material_number
|
||||
- message
|
||||
- unilabos_samples
|
||||
title: StartHeatingResult
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: start_heating参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
module: unilabos.devices.virtual.workbench:VirtualWorkbench
|
||||
status_types:
|
||||
active_tasks_count: int
|
||||
arm_current_task: str
|
||||
arm_state: str
|
||||
heating_station_1_material: str
|
||||
heating_station_1_progress: float
|
||||
heating_station_1_state: str
|
||||
heating_station_2_material: str
|
||||
heating_station_2_progress: float
|
||||
heating_station_2_state: str
|
||||
heating_station_3_material: str
|
||||
heating_station_3_progress: float
|
||||
heating_station_3_state: str
|
||||
message: str
|
||||
status: str
|
||||
type: python
|
||||
config_info: []
|
||||
description: Virtual Workbench with 1 robotic arm and 3 heating stations for concurrent
|
||||
material processing
|
||||
handles: []
|
||||
icon: ''
|
||||
init_param_schema:
|
||||
config:
|
||||
properties:
|
||||
config:
|
||||
type: string
|
||||
device_id:
|
||||
type: string
|
||||
required: []
|
||||
type: object
|
||||
data:
|
||||
properties:
|
||||
active_tasks_count:
|
||||
type: integer
|
||||
arm_current_task:
|
||||
type: string
|
||||
arm_state:
|
||||
type: string
|
||||
heating_station_1_material:
|
||||
type: string
|
||||
heating_station_1_progress:
|
||||
type: number
|
||||
heating_station_1_state:
|
||||
type: string
|
||||
heating_station_2_material:
|
||||
type: string
|
||||
heating_station_2_progress:
|
||||
type: number
|
||||
heating_station_2_state:
|
||||
type: string
|
||||
heating_station_3_material:
|
||||
type: string
|
||||
heating_station_3_progress:
|
||||
type: number
|
||||
heating_station_3_state:
|
||||
type: string
|
||||
message:
|
||||
type: string
|
||||
status:
|
||||
type: string
|
||||
required:
|
||||
- status
|
||||
- arm_state
|
||||
- arm_current_task
|
||||
- heating_station_1_state
|
||||
- heating_station_1_material
|
||||
- heating_station_1_progress
|
||||
- heating_station_2_state
|
||||
- heating_station_2_material
|
||||
- heating_station_2_progress
|
||||
- heating_station_3_state
|
||||
- heating_station_3_material
|
||||
- heating_station_3_progress
|
||||
- active_tasks_count
|
||||
- message
|
||||
type: object
|
||||
version: 1.0.0
|
||||
|
||||
@@ -4,8 +4,6 @@ import os
|
||||
import sys
|
||||
import inspect
|
||||
import importlib
|
||||
import threading
|
||||
from concurrent.futures import ThreadPoolExecutor, as_completed
|
||||
from pathlib import Path
|
||||
from typing import Any, Dict, List, Union, Tuple
|
||||
|
||||
@@ -62,7 +60,6 @@ class Registry:
|
||||
self.device_module_to_registry = {}
|
||||
self.resource_type_registry = {}
|
||||
self._setup_called = False # 跟踪setup是否已调用
|
||||
self._registry_lock = threading.Lock() # 多线程加载时的锁
|
||||
# 其他状态变量
|
||||
# self.is_host_mode = False # 移至BasicConfig中
|
||||
|
||||
@@ -74,20 +71,6 @@ class Registry:
|
||||
|
||||
from unilabos.app.web.utils.action_utils import get_yaml_from_goal_type
|
||||
|
||||
# 获取 HostNode 类的增强信息,用于自动生成 action schema
|
||||
host_node_enhanced_info = get_enhanced_class_info(
|
||||
"unilabos.ros.nodes.presets.host_node:HostNode", use_dynamic=True
|
||||
)
|
||||
|
||||
# 为 test_latency 生成 schema,保留原有 description
|
||||
test_latency_method_info = host_node_enhanced_info.get("action_methods", {}).get("test_latency", {})
|
||||
test_latency_schema = self._generate_unilab_json_command_schema(
|
||||
test_latency_method_info.get("args", []),
|
||||
"test_latency",
|
||||
test_latency_method_info.get("return_annotation"),
|
||||
)
|
||||
test_latency_schema["description"] = "用于测试延迟的动作,返回延迟时间和时间差。"
|
||||
|
||||
self.device_type_registry.update(
|
||||
{
|
||||
"host_node": {
|
||||
@@ -166,22 +149,17 @@ class Registry:
|
||||
"res_id": "unilabos_resources", # 将当前实验室的全部物料id作为下拉框可选择
|
||||
"device_id": "unilabos_devices", # 将当前实验室的全部设备id作为下拉框可选择
|
||||
"parent": "unilabos_nodes", # 将当前实验室的设备/物料作为下拉框可选择
|
||||
"class_name": "unilabos_class",
|
||||
},
|
||||
},
|
||||
"test_latency": {
|
||||
"type": (
|
||||
"UniLabJsonCommandAsync"
|
||||
if test_latency_method_info.get("is_async", False)
|
||||
else "UniLabJsonCommand"
|
||||
),
|
||||
"type": self.EmptyIn,
|
||||
"goal": {},
|
||||
"feedback": {},
|
||||
"result": {},
|
||||
"schema": test_latency_schema,
|
||||
"goal_default": {
|
||||
arg["name"]: arg["default"] for arg in test_latency_method_info.get("args", [])
|
||||
},
|
||||
"schema": ros_action_to_json_schema(
|
||||
self.EmptyIn, "用于测试延迟的动作,返回延迟时间和时间差。"
|
||||
),
|
||||
"goal_default": {},
|
||||
"handles": {},
|
||||
},
|
||||
"auto-test_resource": {
|
||||
@@ -264,115 +242,67 @@ class Registry:
|
||||
# 标记setup已被调用
|
||||
self._setup_called = True
|
||||
|
||||
def _load_single_resource_file(
|
||||
self, file: Path, complete_registry: bool, upload_registry: bool
|
||||
) -> Tuple[Dict[str, Any], Dict[str, Any], bool]:
|
||||
"""
|
||||
加载单个资源文件 (线程安全)
|
||||
|
||||
Returns:
|
||||
(data, complete_data, is_valid): 资源数据, 完整数据, 是否有效
|
||||
"""
|
||||
try:
|
||||
with open(file, encoding="utf-8", mode="r") as f:
|
||||
data = yaml.safe_load(io.StringIO(f.read()))
|
||||
except Exception as e:
|
||||
logger.warning(f"[UniLab Registry] 读取资源文件失败: {file}, 错误: {e}")
|
||||
return {}, {}, False
|
||||
|
||||
if not data:
|
||||
return {}, {}, False
|
||||
|
||||
complete_data = {}
|
||||
for resource_id, resource_info in data.items():
|
||||
if "version" not in resource_info:
|
||||
resource_info["version"] = "1.0.0"
|
||||
if "category" not in resource_info:
|
||||
resource_info["category"] = [file.stem]
|
||||
elif file.stem not in resource_info["category"]:
|
||||
resource_info["category"].append(file.stem)
|
||||
elif not isinstance(resource_info.get("category"), list):
|
||||
resource_info["category"] = [resource_info["category"]]
|
||||
if "config_info" not in resource_info:
|
||||
resource_info["config_info"] = []
|
||||
if "icon" not in resource_info:
|
||||
resource_info["icon"] = ""
|
||||
if "handles" not in resource_info:
|
||||
resource_info["handles"] = []
|
||||
if "init_param_schema" not in resource_info:
|
||||
resource_info["init_param_schema"] = {}
|
||||
if "config_info" in resource_info:
|
||||
del resource_info["config_info"]
|
||||
if "file_path" in resource_info:
|
||||
del resource_info["file_path"]
|
||||
complete_data[resource_id] = copy.deepcopy(dict(sorted(resource_info.items())))
|
||||
if upload_registry:
|
||||
class_info = resource_info.get("class", {})
|
||||
if len(class_info) and "module" in class_info:
|
||||
if class_info.get("type") == "pylabrobot":
|
||||
res_class = get_class(class_info["module"])
|
||||
if callable(res_class) and not isinstance(res_class, type):
|
||||
res_instance = res_class(res_class.__name__)
|
||||
res_ulr = tree_to_list([resource_plr_to_ulab(res_instance)])
|
||||
resource_info["config_info"] = res_ulr
|
||||
resource_info["registry_type"] = "resource"
|
||||
resource_info["file_path"] = str(file.absolute()).replace("\\", "/")
|
||||
|
||||
complete_data = dict(sorted(complete_data.items()))
|
||||
complete_data = copy.deepcopy(complete_data)
|
||||
|
||||
if complete_registry:
|
||||
try:
|
||||
with open(file, "w", encoding="utf-8") as f:
|
||||
yaml.dump(complete_data, f, allow_unicode=True, default_flow_style=False, Dumper=NoAliasDumper)
|
||||
except Exception as e:
|
||||
logger.warning(f"[UniLab Registry] 写入资源文件失败: {file}, 错误: {e}")
|
||||
|
||||
return data, complete_data, True
|
||||
|
||||
def load_resource_types(self, path: os.PathLike, complete_registry: bool, upload_registry: bool):
|
||||
abs_path = Path(path).absolute()
|
||||
resource_path = abs_path / "resources"
|
||||
files = list(resource_path.glob("*/*.yaml"))
|
||||
logger.debug(f"[UniLab Registry] resources: {resource_path.exists()}, total: {len(files)}")
|
||||
|
||||
if not files:
|
||||
return
|
||||
|
||||
# 使用线程池并行加载
|
||||
max_workers = min(8, len(files))
|
||||
results = []
|
||||
|
||||
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
future_to_file = {
|
||||
executor.submit(self._load_single_resource_file, file, complete_registry, upload_registry): file
|
||||
for file in files
|
||||
}
|
||||
for future in as_completed(future_to_file):
|
||||
file = future_to_file[future]
|
||||
try:
|
||||
data, complete_data, is_valid = future.result()
|
||||
if is_valid:
|
||||
results.append((file, data))
|
||||
except Exception as e:
|
||||
logger.warning(f"[UniLab Registry] 处理资源文件异常: {file}, 错误: {e}")
|
||||
|
||||
# 线程安全地更新注册表
|
||||
logger.trace(f"[UniLab Registry] load resources? {resource_path.exists()}, total: {len(files)}")
|
||||
current_resource_number = len(self.resource_type_registry) + 1
|
||||
with self._registry_lock:
|
||||
for i, (file, data) in enumerate(results):
|
||||
for i, file in enumerate(files):
|
||||
with open(file, encoding="utf-8", mode="r") as f:
|
||||
data = yaml.safe_load(io.StringIO(f.read()))
|
||||
complete_data = {}
|
||||
if data:
|
||||
# 为每个资源添加文件路径信息
|
||||
for resource_id, resource_info in data.items():
|
||||
if "version" not in resource_info:
|
||||
resource_info["version"] = "1.0.0"
|
||||
if "category" not in resource_info:
|
||||
resource_info["category"] = [file.stem]
|
||||
elif file.stem not in resource_info["category"]:
|
||||
resource_info["category"].append(file.stem)
|
||||
elif not isinstance(resource_info.get("category"), list):
|
||||
resource_info["category"] = [resource_info["category"]]
|
||||
if "config_info" not in resource_info:
|
||||
resource_info["config_info"] = []
|
||||
if "icon" not in resource_info:
|
||||
resource_info["icon"] = ""
|
||||
if "handles" not in resource_info:
|
||||
resource_info["handles"] = []
|
||||
if "init_param_schema" not in resource_info:
|
||||
resource_info["init_param_schema"] = {}
|
||||
if "config_info" in resource_info:
|
||||
del resource_info["config_info"]
|
||||
if "file_path" in resource_info:
|
||||
del resource_info["file_path"]
|
||||
complete_data[resource_id] = copy.deepcopy(dict(sorted(resource_info.items())))
|
||||
if upload_registry:
|
||||
class_info = resource_info.get("class", {})
|
||||
if len(class_info) and "module" in class_info:
|
||||
if class_info.get("type") == "pylabrobot":
|
||||
res_class = get_class(class_info["module"])
|
||||
if callable(res_class) and not isinstance(
|
||||
res_class, type
|
||||
): # 有的是类,有的是函数,这里暂时只登记函数类的
|
||||
res_instance = res_class(res_class.__name__)
|
||||
res_ulr = tree_to_list([resource_plr_to_ulab(res_instance)])
|
||||
resource_info["config_info"] = res_ulr
|
||||
resource_info["registry_type"] = "resource"
|
||||
resource_info["file_path"] = str(file.absolute()).replace("\\", "/")
|
||||
complete_data = dict(sorted(complete_data.items()))
|
||||
complete_data = copy.deepcopy(complete_data)
|
||||
if complete_registry:
|
||||
with open(file, "w", encoding="utf-8") as f:
|
||||
yaml.dump(complete_data, f, allow_unicode=True, default_flow_style=False, Dumper=NoAliasDumper)
|
||||
|
||||
self.resource_type_registry.update(data)
|
||||
logger.trace(
|
||||
f"[UniLab Registry] Resource-{current_resource_number} File-{i+1}/{len(results)} "
|
||||
logger.trace( # type: ignore
|
||||
f"[UniLab Registry] Resource-{current_resource_number} File-{i+1}/{len(files)} "
|
||||
+ f"Add {list(data.keys())}"
|
||||
)
|
||||
current_resource_number += 1
|
||||
|
||||
# 记录无效文件
|
||||
valid_files = {r[0] for r in results}
|
||||
for file in files:
|
||||
if file not in valid_files:
|
||||
logger.debug(f"[UniLab Registry] Res File Not Valid YAML File: {file.absolute()}")
|
||||
else:
|
||||
logger.debug(f"[UniLab Registry] Res File-{i+1}/{len(files)} Not Valid YAML File: {file.absolute()}")
|
||||
|
||||
def _extract_class_docstrings(self, module_string: str) -> Dict[str, str]:
|
||||
"""
|
||||
@@ -549,11 +479,7 @@ class Registry:
|
||||
return status_schema
|
||||
|
||||
def _generate_unilab_json_command_schema(
|
||||
self,
|
||||
method_args: List[Dict[str, Any]],
|
||||
method_name: str,
|
||||
return_annotation: Any = None,
|
||||
previous_schema: Dict[str, Any] | None = None,
|
||||
self, method_args: List[Dict[str, Any]], method_name: str, return_annotation: Any = None
|
||||
) -> Dict[str, Any]:
|
||||
"""
|
||||
根据UniLabJsonCommand方法信息生成JSON Schema,暂不支持嵌套类型
|
||||
@@ -562,7 +488,6 @@ class Registry:
|
||||
method_args: 方法信息字典,包含args等
|
||||
method_name: 方法名称
|
||||
return_annotation: 返回类型注解,用于生成result schema(仅支持TypedDict)
|
||||
previous_schema: 之前的 schema,用于保留 goal/feedback/result 下一级字段的 description
|
||||
|
||||
Returns:
|
||||
JSON Schema格式的参数schema
|
||||
@@ -596,7 +521,7 @@ class Registry:
|
||||
if return_annotation is not None and self._is_typed_dict(return_annotation):
|
||||
result_schema = self._generate_typed_dict_result_schema(return_annotation)
|
||||
|
||||
final_schema = {
|
||||
return {
|
||||
"title": f"{method_name}参数",
|
||||
"description": f"",
|
||||
"type": "object",
|
||||
@@ -604,40 +529,6 @@ class Registry:
|
||||
"required": ["goal"],
|
||||
}
|
||||
|
||||
# 保留之前 schema 中 goal/feedback/result 下一级字段的 description
|
||||
if previous_schema:
|
||||
self._preserve_field_descriptions(final_schema, previous_schema)
|
||||
|
||||
return final_schema
|
||||
|
||||
def _preserve_field_descriptions(self, new_schema: Dict[str, Any], previous_schema: Dict[str, Any]) -> None:
|
||||
"""
|
||||
保留之前 schema 中 goal/feedback/result 下一级字段的 description 和 title
|
||||
|
||||
Args:
|
||||
new_schema: 新生成的 schema(会被修改)
|
||||
previous_schema: 之前的 schema
|
||||
"""
|
||||
for section in ["goal", "feedback", "result"]:
|
||||
new_section = new_schema.get("properties", {}).get(section, {})
|
||||
prev_section = previous_schema.get("properties", {}).get(section, {})
|
||||
|
||||
if not new_section or not prev_section:
|
||||
continue
|
||||
|
||||
new_props = new_section.get("properties", {})
|
||||
prev_props = prev_section.get("properties", {})
|
||||
|
||||
for field_name, field_schema in new_props.items():
|
||||
if field_name in prev_props:
|
||||
prev_field = prev_props[field_name]
|
||||
# 保留字段的 description
|
||||
if "description" in prev_field and prev_field["description"]:
|
||||
field_schema["description"] = prev_field["description"]
|
||||
# 保留字段的 title(用户自定义的中文名)
|
||||
if "title" in prev_field and prev_field["title"]:
|
||||
field_schema["title"] = prev_field["title"]
|
||||
|
||||
def _is_typed_dict(self, annotation: Any) -> bool:
|
||||
"""
|
||||
检查类型注解是否是TypedDict
|
||||
@@ -724,244 +615,209 @@ class Registry:
|
||||
"handles": {},
|
||||
}
|
||||
|
||||
def _load_single_device_file(
|
||||
self, file: Path, complete_registry: bool, get_yaml_from_goal_type
|
||||
) -> Tuple[Dict[str, Any], Dict[str, Any], bool, List[str]]:
|
||||
"""
|
||||
加载单个设备文件 (线程安全)
|
||||
|
||||
Returns:
|
||||
(data, complete_data, is_valid, device_ids): 设备数据, 完整数据, 是否有效, 设备ID列表
|
||||
"""
|
||||
try:
|
||||
with open(file, encoding="utf-8", mode="r") as f:
|
||||
data = yaml.safe_load(io.StringIO(f.read()))
|
||||
except Exception as e:
|
||||
logger.warning(f"[UniLab Registry] 读取设备文件失败: {file}, 错误: {e}")
|
||||
return {}, {}, False, []
|
||||
|
||||
if not data:
|
||||
return {}, {}, False, []
|
||||
|
||||
complete_data = {}
|
||||
action_str_type_mapping = {
|
||||
"UniLabJsonCommand": "UniLabJsonCommand",
|
||||
"UniLabJsonCommandAsync": "UniLabJsonCommandAsync",
|
||||
}
|
||||
status_str_type_mapping = {}
|
||||
device_ids = []
|
||||
|
||||
for device_id, device_config in data.items():
|
||||
if "version" not in device_config:
|
||||
device_config["version"] = "1.0.0"
|
||||
if "category" not in device_config:
|
||||
device_config["category"] = [file.stem]
|
||||
elif file.stem not in device_config["category"]:
|
||||
device_config["category"].append(file.stem)
|
||||
if "config_info" not in device_config:
|
||||
device_config["config_info"] = []
|
||||
if "description" not in device_config:
|
||||
device_config["description"] = ""
|
||||
if "icon" not in device_config:
|
||||
device_config["icon"] = ""
|
||||
if "handles" not in device_config:
|
||||
device_config["handles"] = []
|
||||
if "init_param_schema" not in device_config:
|
||||
device_config["init_param_schema"] = {}
|
||||
if "class" in device_config:
|
||||
if "status_types" not in device_config["class"] or device_config["class"]["status_types"] is None:
|
||||
device_config["class"]["status_types"] = {}
|
||||
if (
|
||||
"action_value_mappings" not in device_config["class"]
|
||||
or device_config["class"]["action_value_mappings"] is None
|
||||
):
|
||||
device_config["class"]["action_value_mappings"] = {}
|
||||
enhanced_info = {}
|
||||
if complete_registry:
|
||||
device_config["class"]["status_types"].clear()
|
||||
enhanced_info = get_enhanced_class_info(device_config["class"]["module"], use_dynamic=True)
|
||||
if not enhanced_info.get("dynamic_import_success", False):
|
||||
continue
|
||||
device_config["class"]["status_types"].update(
|
||||
{k: v["return_type"] for k, v in enhanced_info["status_methods"].items()}
|
||||
)
|
||||
for status_name, status_type in device_config["class"]["status_types"].items():
|
||||
if isinstance(status_type, tuple) or status_type in ["Any", "None", "Unknown"]:
|
||||
status_type = "String"
|
||||
device_config["class"]["status_types"][status_name] = status_type
|
||||
try:
|
||||
target_type = self._replace_type_with_class(status_type, device_id, f"状态 {status_name}")
|
||||
except ROSMsgNotFound:
|
||||
continue
|
||||
if target_type in [dict, list]:
|
||||
target_type = String
|
||||
status_str_type_mapping[status_type] = target_type
|
||||
device_config["class"]["status_types"] = dict(sorted(device_config["class"]["status_types"].items()))
|
||||
if complete_registry:
|
||||
old_action_configs = {}
|
||||
for action_name, action_config in device_config["class"]["action_value_mappings"].items():
|
||||
old_action_configs[action_name] = action_config
|
||||
|
||||
device_config["class"]["action_value_mappings"] = {
|
||||
k: v
|
||||
for k, v in device_config["class"]["action_value_mappings"].items()
|
||||
if not k.startswith("auto-")
|
||||
}
|
||||
device_config["class"]["action_value_mappings"].update(
|
||||
{
|
||||
f"auto-{k}": {
|
||||
"type": "UniLabJsonCommandAsync" if v["is_async"] else "UniLabJsonCommand",
|
||||
"goal": {},
|
||||
"feedback": {},
|
||||
"result": {},
|
||||
"schema": self._generate_unilab_json_command_schema(
|
||||
v["args"],
|
||||
k,
|
||||
v.get("return_annotation"),
|
||||
old_action_configs.get(f"auto-{k}", {}).get("schema"),
|
||||
),
|
||||
"goal_default": {i["name"]: i["default"] for i in v["args"]},
|
||||
"handles": old_action_configs.get(f"auto-{k}", {}).get("handles", []),
|
||||
"placeholder_keys": {
|
||||
i["name"]: (
|
||||
"unilabos_resources"
|
||||
if i["type"] == "unilabos.registry.placeholder_type:ResourceSlot"
|
||||
or i["type"] == ("list", "unilabos.registry.placeholder_type:ResourceSlot")
|
||||
else "unilabos_devices"
|
||||
)
|
||||
for i in v["args"]
|
||||
if i.get("type", "")
|
||||
in [
|
||||
"unilabos.registry.placeholder_type:ResourceSlot",
|
||||
"unilabos.registry.placeholder_type:DeviceSlot",
|
||||
("list", "unilabos.registry.placeholder_type:ResourceSlot"),
|
||||
("list", "unilabos.registry.placeholder_type:DeviceSlot"),
|
||||
]
|
||||
},
|
||||
}
|
||||
for k, v in enhanced_info["action_methods"].items()
|
||||
if k not in device_config["class"]["action_value_mappings"]
|
||||
}
|
||||
)
|
||||
for action_name, old_config in old_action_configs.items():
|
||||
if action_name in device_config["class"]["action_value_mappings"]:
|
||||
old_schema = old_config.get("schema", {})
|
||||
if "description" in old_schema and old_schema["description"]:
|
||||
device_config["class"]["action_value_mappings"][action_name]["schema"][
|
||||
"description"
|
||||
] = old_schema["description"]
|
||||
device_config["init_param_schema"] = {}
|
||||
device_config["init_param_schema"]["config"] = self._generate_unilab_json_command_schema(
|
||||
enhanced_info["init_params"], "__init__"
|
||||
)["properties"]["goal"]
|
||||
device_config["init_param_schema"]["data"] = self._generate_status_types_schema(
|
||||
enhanced_info["status_methods"]
|
||||
)
|
||||
|
||||
device_config.pop("schema", None)
|
||||
device_config["class"]["action_value_mappings"] = dict(
|
||||
sorted(device_config["class"]["action_value_mappings"].items())
|
||||
)
|
||||
for action_name, action_config in device_config["class"]["action_value_mappings"].items():
|
||||
if "handles" not in action_config:
|
||||
action_config["handles"] = {}
|
||||
elif isinstance(action_config["handles"], list):
|
||||
if len(action_config["handles"]):
|
||||
logger.error(f"设备{device_id} {action_name} 的handles配置错误,应该是字典类型")
|
||||
continue
|
||||
else:
|
||||
action_config["handles"] = {}
|
||||
if "type" in action_config:
|
||||
action_type_str: str = action_config["type"]
|
||||
if not action_type_str.startswith("UniLabJsonCommand"):
|
||||
try:
|
||||
target_type = self._replace_type_with_class(
|
||||
action_type_str, device_id, f"动作 {action_name}"
|
||||
)
|
||||
except ROSMsgNotFound:
|
||||
continue
|
||||
action_str_type_mapping[action_type_str] = target_type
|
||||
if target_type is not None:
|
||||
action_config["goal_default"] = yaml.safe_load(
|
||||
io.StringIO(get_yaml_from_goal_type(target_type.Goal))
|
||||
)
|
||||
action_config["schema"] = ros_action_to_json_schema(target_type)
|
||||
else:
|
||||
logger.warning(
|
||||
f"[UniLab Registry] 设备 {device_id} 的动作 {action_name} 类型为空,跳过替换"
|
||||
)
|
||||
complete_data[device_id] = copy.deepcopy(dict(sorted(device_config.items())))
|
||||
for status_name, status_type in device_config["class"]["status_types"].items():
|
||||
device_config["class"]["status_types"][status_name] = status_str_type_mapping[status_type]
|
||||
for action_name, action_config in device_config["class"]["action_value_mappings"].items():
|
||||
if action_config["type"] not in action_str_type_mapping:
|
||||
continue
|
||||
action_config["type"] = action_str_type_mapping[action_config["type"]]
|
||||
self._add_builtin_actions(device_config, device_id)
|
||||
device_config["file_path"] = str(file.absolute()).replace("\\", "/")
|
||||
device_config["registry_type"] = "device"
|
||||
device_ids.append(device_id)
|
||||
|
||||
complete_data = dict(sorted(complete_data.items()))
|
||||
complete_data = copy.deepcopy(complete_data)
|
||||
try:
|
||||
with open(file, "w", encoding="utf-8") as f:
|
||||
yaml.dump(complete_data, f, allow_unicode=True, default_flow_style=False, Dumper=NoAliasDumper)
|
||||
except Exception as e:
|
||||
logger.warning(f"[UniLab Registry] 写入设备文件失败: {file}, 错误: {e}")
|
||||
|
||||
return data, complete_data, True, device_ids
|
||||
|
||||
def load_device_types(self, path: os.PathLike, complete_registry: bool):
|
||||
# return
|
||||
abs_path = Path(path).absolute()
|
||||
devices_path = abs_path / "devices"
|
||||
device_comms_path = abs_path / "device_comms"
|
||||
files = list(devices_path.glob("*.yaml")) + list(device_comms_path.glob("*.yaml"))
|
||||
logger.trace(
|
||||
logger.trace( # type: ignore
|
||||
f"[UniLab Registry] devices: {devices_path.exists()}, device_comms: {device_comms_path.exists()}, "
|
||||
+ f"total: {len(files)}"
|
||||
)
|
||||
|
||||
if not files:
|
||||
return
|
||||
|
||||
current_device_number = len(self.device_type_registry) + 1
|
||||
from unilabos.app.web.utils.action_utils import get_yaml_from_goal_type
|
||||
|
||||
# 使用线程池并行加载
|
||||
max_workers = min(8, len(files))
|
||||
results = []
|
||||
|
||||
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
future_to_file = {
|
||||
executor.submit(self._load_single_device_file, file, complete_registry, get_yaml_from_goal_type): file
|
||||
for file in files
|
||||
for i, file in enumerate(files):
|
||||
with open(file, encoding="utf-8", mode="r") as f:
|
||||
data = yaml.safe_load(io.StringIO(f.read()))
|
||||
complete_data = {}
|
||||
action_str_type_mapping = {
|
||||
"UniLabJsonCommand": "UniLabJsonCommand",
|
||||
"UniLabJsonCommandAsync": "UniLabJsonCommandAsync",
|
||||
}
|
||||
for future in as_completed(future_to_file):
|
||||
file = future_to_file[future]
|
||||
try:
|
||||
data, complete_data, is_valid, device_ids = future.result()
|
||||
if is_valid:
|
||||
results.append((file, data, device_ids))
|
||||
except Exception as e:
|
||||
logger.warning(f"[UniLab Registry] 处理设备文件异常: {file}, 错误: {e}")
|
||||
status_str_type_mapping = {}
|
||||
if data:
|
||||
# 在添加到注册表前处理类型替换
|
||||
for device_id, device_config in data.items():
|
||||
# 添加文件路径信息 - 使用规范化的完整文件路径
|
||||
if "version" not in device_config:
|
||||
device_config["version"] = "1.0.0"
|
||||
if "category" not in device_config:
|
||||
device_config["category"] = [file.stem]
|
||||
elif file.stem not in device_config["category"]:
|
||||
device_config["category"].append(file.stem)
|
||||
if "config_info" not in device_config:
|
||||
device_config["config_info"] = []
|
||||
if "description" not in device_config:
|
||||
device_config["description"] = ""
|
||||
if "icon" not in device_config:
|
||||
device_config["icon"] = ""
|
||||
if "handles" not in device_config:
|
||||
device_config["handles"] = []
|
||||
if "init_param_schema" not in device_config:
|
||||
device_config["init_param_schema"] = {}
|
||||
if "class" in device_config:
|
||||
if (
|
||||
"status_types" not in device_config["class"]
|
||||
or device_config["class"]["status_types"] is None
|
||||
):
|
||||
device_config["class"]["status_types"] = {}
|
||||
if (
|
||||
"action_value_mappings" not in device_config["class"]
|
||||
or device_config["class"]["action_value_mappings"] is None
|
||||
):
|
||||
device_config["class"]["action_value_mappings"] = {}
|
||||
enhanced_info = {}
|
||||
if complete_registry:
|
||||
device_config["class"]["status_types"].clear()
|
||||
enhanced_info = get_enhanced_class_info(device_config["class"]["module"], use_dynamic=True)
|
||||
if not enhanced_info.get("dynamic_import_success", False):
|
||||
continue
|
||||
device_config["class"]["status_types"].update(
|
||||
{k: v["return_type"] for k, v in enhanced_info["status_methods"].items()}
|
||||
)
|
||||
for status_name, status_type in device_config["class"]["status_types"].items():
|
||||
if isinstance(status_type, tuple) or status_type in ["Any", "None", "Unknown"]:
|
||||
status_type = "String" # 替换成ROS的String,便于显示
|
||||
device_config["class"]["status_types"][status_name] = status_type
|
||||
try:
|
||||
target_type = self._replace_type_with_class(
|
||||
status_type, device_id, f"状态 {status_name}"
|
||||
)
|
||||
except ROSMsgNotFound:
|
||||
continue
|
||||
if target_type in [
|
||||
dict,
|
||||
list,
|
||||
]: # 对于嵌套类型返回的对象,暂时处理成字符串,无法直接进行转换
|
||||
target_type = String
|
||||
status_str_type_mapping[status_type] = target_type
|
||||
device_config["class"]["status_types"] = dict(
|
||||
sorted(device_config["class"]["status_types"].items())
|
||||
)
|
||||
if complete_registry:
|
||||
# 保存原有的description信息
|
||||
old_descriptions = {}
|
||||
for action_name, action_config in device_config["class"]["action_value_mappings"].items():
|
||||
if "description" in action_config.get("schema", {}):
|
||||
description = action_config["schema"]["description"]
|
||||
if len(description):
|
||||
old_descriptions[action_name] = action_config["schema"]["description"]
|
||||
|
||||
# 线程安全地更新注册表
|
||||
current_device_number = len(self.device_type_registry) + 1
|
||||
with self._registry_lock:
|
||||
for file, data, device_ids in results:
|
||||
self.device_type_registry.update(data)
|
||||
for device_id in device_ids:
|
||||
logger.trace(
|
||||
f"[UniLab Registry] Device-{current_device_number} Add {device_id} "
|
||||
device_config["class"]["action_value_mappings"] = {
|
||||
k: v
|
||||
for k, v in device_config["class"]["action_value_mappings"].items()
|
||||
if not k.startswith("auto-")
|
||||
}
|
||||
# 处理动作值映射
|
||||
device_config["class"]["action_value_mappings"].update(
|
||||
{
|
||||
f"auto-{k}": {
|
||||
"type": "UniLabJsonCommandAsync" if v["is_async"] else "UniLabJsonCommand",
|
||||
"goal": {},
|
||||
"feedback": {},
|
||||
"result": {},
|
||||
"schema": self._generate_unilab_json_command_schema(
|
||||
v["args"], k, v.get("return_annotation")
|
||||
),
|
||||
"goal_default": {i["name"]: i["default"] for i in v["args"]},
|
||||
"handles": [],
|
||||
"placeholder_keys": {
|
||||
i["name"]: (
|
||||
"unilabos_resources"
|
||||
if i["type"] == "unilabos.registry.placeholder_type:ResourceSlot"
|
||||
or i["type"]
|
||||
== ("list", "unilabos.registry.placeholder_type:ResourceSlot")
|
||||
else "unilabos_devices"
|
||||
)
|
||||
for i in v["args"]
|
||||
if i.get("type", "")
|
||||
in [
|
||||
"unilabos.registry.placeholder_type:ResourceSlot",
|
||||
"unilabos.registry.placeholder_type:DeviceSlot",
|
||||
("list", "unilabos.registry.placeholder_type:ResourceSlot"),
|
||||
("list", "unilabos.registry.placeholder_type:DeviceSlot"),
|
||||
]
|
||||
},
|
||||
}
|
||||
# 不生成已配置action的动作
|
||||
for k, v in enhanced_info["action_methods"].items()
|
||||
if k not in device_config["class"]["action_value_mappings"]
|
||||
}
|
||||
)
|
||||
# 恢复原有的description信息(auto开头的不修改)
|
||||
for action_name, description in old_descriptions.items():
|
||||
if action_name in device_config["class"]["action_value_mappings"]: # 有一些会被删除
|
||||
device_config["class"]["action_value_mappings"][action_name]["schema"][
|
||||
"description"
|
||||
] = description
|
||||
device_config["init_param_schema"] = {}
|
||||
device_config["init_param_schema"]["config"] = self._generate_unilab_json_command_schema(
|
||||
enhanced_info["init_params"], "__init__"
|
||||
)["properties"]["goal"]
|
||||
device_config["init_param_schema"]["data"] = self._generate_status_types_schema(
|
||||
enhanced_info["status_methods"]
|
||||
)
|
||||
|
||||
device_config.pop("schema", None)
|
||||
device_config["class"]["action_value_mappings"] = dict(
|
||||
sorted(device_config["class"]["action_value_mappings"].items())
|
||||
)
|
||||
for action_name, action_config in device_config["class"]["action_value_mappings"].items():
|
||||
if "handles" not in action_config:
|
||||
action_config["handles"] = {}
|
||||
elif isinstance(action_config["handles"], list):
|
||||
if len(action_config["handles"]):
|
||||
logger.error(f"设备{device_id} {action_name} 的handles配置错误,应该是字典类型")
|
||||
continue
|
||||
else:
|
||||
action_config["handles"] = {}
|
||||
if "type" in action_config:
|
||||
action_type_str: str = action_config["type"]
|
||||
# 通过Json发放指令,而不是通过特殊的ros action进行处理
|
||||
if not action_type_str.startswith("UniLabJsonCommand"):
|
||||
try:
|
||||
target_type = self._replace_type_with_class(
|
||||
action_type_str, device_id, f"动作 {action_name}"
|
||||
)
|
||||
except ROSMsgNotFound:
|
||||
continue
|
||||
action_str_type_mapping[action_type_str] = target_type
|
||||
if target_type is not None:
|
||||
action_config["goal_default"] = yaml.safe_load(
|
||||
io.StringIO(get_yaml_from_goal_type(target_type.Goal))
|
||||
)
|
||||
action_config["schema"] = ros_action_to_json_schema(target_type)
|
||||
else:
|
||||
logger.warning(
|
||||
f"[UniLab Registry] 设备 {device_id} 的动作 {action_name} 类型为空,跳过替换"
|
||||
)
|
||||
complete_data[device_id] = copy.deepcopy(dict(sorted(device_config.items()))) # 稍后dump到文件
|
||||
for status_name, status_type in device_config["class"]["status_types"].items():
|
||||
device_config["class"]["status_types"][status_name] = status_str_type_mapping[status_type]
|
||||
for action_name, action_config in device_config["class"]["action_value_mappings"].items():
|
||||
if action_config["type"] not in action_str_type_mapping:
|
||||
continue
|
||||
action_config["type"] = action_str_type_mapping[action_config["type"]]
|
||||
# 添加内置的驱动命令动作
|
||||
self._add_builtin_actions(device_config, device_id)
|
||||
device_config["file_path"] = str(file.absolute()).replace("\\", "/")
|
||||
device_config["registry_type"] = "device"
|
||||
logger.trace( # type: ignore
|
||||
f"[UniLab Registry] Device-{current_device_number} File-{i+1}/{len(files)} Add {device_id} "
|
||||
+ f"[{data[device_id].get('name', '未命名设备')}]"
|
||||
)
|
||||
current_device_number += 1
|
||||
|
||||
# 记录无效文件
|
||||
valid_files = {r[0] for r in results}
|
||||
for file in files:
|
||||
if file not in valid_files:
|
||||
logger.debug(f"[UniLab Registry] Device File Not Valid YAML File: {file.absolute()}")
|
||||
complete_data = dict(sorted(complete_data.items()))
|
||||
complete_data = copy.deepcopy(complete_data)
|
||||
with open(file, "w", encoding="utf-8") as f:
|
||||
yaml.dump(complete_data, f, allow_unicode=True, default_flow_style=False, Dumper=NoAliasDumper)
|
||||
self.device_type_registry.update(data)
|
||||
else:
|
||||
logger.debug(
|
||||
f"[UniLab Registry] Device File-{i+1}/{len(files)} Not Valid YAML File: {file.absolute()}"
|
||||
)
|
||||
|
||||
def obtain_registry_device_info(self):
|
||||
devices = []
|
||||
|
||||
@@ -20,6 +20,17 @@ BIOYOND_PolymerStation_Liquid_Vial:
|
||||
icon: ''
|
||||
init_param_schema: {}
|
||||
version: 1.0.0
|
||||
BIOYOND_PolymerStation_Measurement_Vial:
|
||||
category:
|
||||
- bottles
|
||||
class:
|
||||
module: unilabos.resources.bioyond.bottles:BIOYOND_PolymerStation_Measurement_Vial
|
||||
type: pylabrobot
|
||||
description: 聚合站-测量小瓶(测密度)
|
||||
handles: []
|
||||
icon: ''
|
||||
init_param_schema: {}
|
||||
version: 1.0.0
|
||||
BIOYOND_PolymerStation_Reactor:
|
||||
category:
|
||||
- bottles
|
||||
|
||||
@@ -193,3 +193,20 @@ def BIOYOND_PolymerStation_Flask(
|
||||
barcode=barcode,
|
||||
model="BIOYOND_PolymerStation_Flask",
|
||||
)
|
||||
|
||||
def BIOYOND_PolymerStation_Measurement_Vial(
|
||||
name: str,
|
||||
diameter: float = 25.0,
|
||||
height: float = 60.0,
|
||||
max_volume: float = 20000.0, # 20mL
|
||||
barcode: str = None,
|
||||
) -> Bottle:
|
||||
"""创建测量小瓶"""
|
||||
return Bottle(
|
||||
name=name,
|
||||
diameter=diameter,
|
||||
height=height,
|
||||
max_volume=max_volume,
|
||||
barcode=barcode,
|
||||
model="BIOYOND_PolymerStation_Measurement_Vial",
|
||||
)
|
||||
|
||||
@@ -49,20 +49,17 @@ class BIOYOND_PolymerReactionStation_Deck(Deck):
|
||||
"测量小瓶仓库(测密度)": bioyond_warehouse_density_vial("测量小瓶仓库(测密度)"), # A01~B03
|
||||
}
|
||||
self.warehouse_locations = {
|
||||
"堆栈1左": Coordinate(0.0, 430.0, 0.0), # 左侧位置
|
||||
"堆栈1右": Coordinate(2500.0, 430.0, 0.0), # 右侧位置
|
||||
"站内试剂存放堆栈": Coordinate(640.0, 480.0, 0.0),
|
||||
"堆栈1左": Coordinate(-200.0, 450.0, 0.0), # 左侧位置
|
||||
"堆栈1右": Coordinate(2350.0, 450.0, 0.0), # 右侧位置
|
||||
"站内试剂存放堆栈": Coordinate(730.0, 390.0, 0.0),
|
||||
# "移液站内10%分装液体准备仓库": Coordinate(1200.0, 600.0, 0.0),
|
||||
"站内Tip盒堆栈": Coordinate(300.0, 150.0, 0.0),
|
||||
"测量小瓶仓库(测密度)": Coordinate(922.0, 552.0, 0.0),
|
||||
"测量小瓶仓库(测密度)": Coordinate(940.0, 530.0, 0.0),
|
||||
}
|
||||
self.warehouses["站内试剂存放堆栈"].rotation = Rotation(z=90)
|
||||
self.warehouses["测量小瓶仓库(测密度)"].rotation = Rotation(z=270)
|
||||
|
||||
for warehouse_name, warehouse in self.warehouses.items():
|
||||
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
|
||||
|
||||
|
||||
class BIOYOND_PolymerPreparationStation_Deck(Deck):
|
||||
def __init__(
|
||||
self,
|
||||
@@ -144,6 +141,7 @@ class BIOYOND_YB_Deck(Deck):
|
||||
|
||||
for warehouse_name, warehouse in self.warehouses.items():
|
||||
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
|
||||
|
||||
def YB_Deck(name: str) -> Deck:
|
||||
by=BIOYOND_YB_Deck(name=name)
|
||||
by.setup()
|
||||
|
||||
@@ -46,41 +46,55 @@ def bioyond_warehouse_1x4x4_right(name: str) -> WareHouse:
|
||||
)
|
||||
|
||||
def bioyond_warehouse_density_vial(name: str) -> WareHouse:
|
||||
"""创建测量小瓶仓库(测密度) A01~B03"""
|
||||
"""创建测量小瓶仓库(测密度) - 竖向排列2列3行
|
||||
布局(从下到上,从左到右):
|
||||
| A03 | B03 | ← 顶部
|
||||
| A02 | B02 | ← 中部
|
||||
| A01 | B01 | ← 底部
|
||||
"""
|
||||
return warehouse_factory(
|
||||
name=name,
|
||||
num_items_x=3, # 3列(01-03)
|
||||
num_items_y=2, # 2行(A-B)
|
||||
num_items_x=2, # 2列(A, B)
|
||||
num_items_y=3, # 3行(01-03,从下到上)
|
||||
num_items_z=1, # 1层
|
||||
dx=10.0,
|
||||
dy=10.0,
|
||||
dz=10.0,
|
||||
item_dx=40.0,
|
||||
item_dy=40.0,
|
||||
item_dx=40.0, # 列间距(A到B的横向距离)
|
||||
item_dy=40.0, # 行间距(01到02到03的竖向距离)
|
||||
item_dz=50.0,
|
||||
# 用更小的 resource_size 来表现 "小点的孔位"
|
||||
# ⭐ 竖向warehouse:槽位尺寸也是竖向的(小瓶已经是正方形,无需调整)
|
||||
resource_size_x=30.0,
|
||||
resource_size_y=30.0,
|
||||
resource_size_z=12.0,
|
||||
category="warehouse",
|
||||
col_offset=0,
|
||||
layout="row-major",
|
||||
layout="vertical-col-major", # ⭐ 竖向warehouse专用布局
|
||||
)
|
||||
|
||||
def bioyond_warehouse_reagent_storage(name: str) -> WareHouse:
|
||||
"""创建BioYond站内试剂存放堆栈(A01~A02, 1行×2列)"""
|
||||
"""创建BioYond站内试剂存放堆栈 - 竖向排列1列2行
|
||||
布局(竖向,从下到上):
|
||||
| A02 | ← 顶部
|
||||
| A01 | ← 底部
|
||||
"""
|
||||
return warehouse_factory(
|
||||
name=name,
|
||||
num_items_x=2, # 2列(01-02)
|
||||
num_items_y=1, # 1行(A)
|
||||
num_items_x=1, # 1列
|
||||
num_items_y=2, # 2行(01-02,从下到上)
|
||||
num_items_z=1, # 1层
|
||||
dx=10.0,
|
||||
dy=10.0,
|
||||
dz=10.0,
|
||||
item_dx=137.0,
|
||||
item_dy=96.0,
|
||||
item_dx=96.0, # 列间距(这里只有1列,不重要)
|
||||
item_dy=137.0, # 行间距(A01到A02的竖向距离)
|
||||
item_dz=120.0,
|
||||
# ⭐ 竖向warehouse:交换槽位尺寸,使槽位框也是竖向的
|
||||
resource_size_x=86.0, # 原来的 resource_size_y
|
||||
resource_size_y=127.0, # 原来的 resource_size_x
|
||||
resource_size_z=25.0,
|
||||
category="warehouse",
|
||||
layout="vertical-col-major", # ⭐ 竖向warehouse专用布局
|
||||
)
|
||||
|
||||
def bioyond_warehouse_tipbox_storage(name: str) -> WareHouse:
|
||||
|
||||
@@ -151,40 +151,12 @@ def canonicalize_links_ports(links: List[Dict[str, Any]], resource_tree_set: Res
|
||||
"""
|
||||
# 构建 id 到 uuid 的映射
|
||||
id_to_uuid: Dict[str, str] = {}
|
||||
uuid_to_id: Dict[str, str] = {}
|
||||
for node in resource_tree_set.all_nodes:
|
||||
id_to_uuid[node.res_content.id] = node.res_content.uuid
|
||||
uuid_to_id[node.res_content.uuid] = node.res_content.id
|
||||
|
||||
# 第三遍处理:为每个 link 添加 source_uuid 和 target_uuid
|
||||
for link in links:
|
||||
source_id = link.get("source")
|
||||
target_id = link.get("target")
|
||||
|
||||
# 添加 source_uuid
|
||||
if source_id and source_id in id_to_uuid:
|
||||
link["source_uuid"] = id_to_uuid[source_id]
|
||||
|
||||
# 添加 target_uuid
|
||||
if target_id and target_id in id_to_uuid:
|
||||
link["target_uuid"] = id_to_uuid[target_id]
|
||||
|
||||
source_uuid = link.get("source_uuid")
|
||||
target_uuid = link.get("target_uuid")
|
||||
|
||||
# 添加 source_uuid
|
||||
if source_uuid and source_uuid in uuid_to_id:
|
||||
link["source"] = uuid_to_id[source_uuid]
|
||||
|
||||
# 添加 target_uuid
|
||||
if target_uuid and target_uuid in uuid_to_id:
|
||||
link["target"] = uuid_to_id[target_uuid]
|
||||
|
||||
# 第一遍处理:将字符串类型的port转换为字典格式
|
||||
for link in links:
|
||||
port = link.get("port")
|
||||
if port is None:
|
||||
continue
|
||||
if link.get("type", "physical") == "physical":
|
||||
link["type"] = "fluid"
|
||||
if isinstance(port, int):
|
||||
@@ -207,15 +179,13 @@ def canonicalize_links_ports(links: List[Dict[str, Any]], resource_tree_set: Res
|
||||
link["port"] = {link["source"]: None, link["target"]: None}
|
||||
|
||||
# 构建边字典,键为(source节点, target节点),值为对应的port信息
|
||||
edges = {(link["source"], link["target"]): link["port"] for link in links if link.get("port")}
|
||||
edges = {(link["source"], link["target"]): link["port"] for link in links}
|
||||
|
||||
# 第二遍处理:填充反向边的dest信息
|
||||
delete_reverses = []
|
||||
for i, link in enumerate(links):
|
||||
s, t = link["source"], link["target"]
|
||||
current_port = link.get("port")
|
||||
if current_port is None:
|
||||
continue
|
||||
current_port = link["port"]
|
||||
if current_port.get(t) is None:
|
||||
reverse_key = (t, s)
|
||||
reverse_port = edges.get(reverse_key)
|
||||
@@ -230,6 +200,20 @@ def canonicalize_links_ports(links: List[Dict[str, Any]], resource_tree_set: Res
|
||||
current_port[t] = current_port[s]
|
||||
# 删除已被使用反向端口信息的反向边
|
||||
standardized_links = [link for i, link in enumerate(links) if i not in delete_reverses]
|
||||
|
||||
# 第三遍处理:为每个 link 添加 source_uuid 和 target_uuid
|
||||
for link in standardized_links:
|
||||
source_id = link.get("source")
|
||||
target_id = link.get("target")
|
||||
|
||||
# 添加 source_uuid
|
||||
if source_id and source_id in id_to_uuid:
|
||||
link["source_uuid"] = id_to_uuid[source_id]
|
||||
|
||||
# 添加 target_uuid
|
||||
if target_id and target_id in id_to_uuid:
|
||||
link["target_uuid"] = id_to_uuid[target_id]
|
||||
|
||||
return standardized_links
|
||||
|
||||
|
||||
@@ -276,7 +260,7 @@ def read_node_link_json(
|
||||
resource_tree_set = canonicalize_nodes_data(nodes)
|
||||
|
||||
# 标准化边数据
|
||||
links = data.get("links", data.get("edges", []))
|
||||
links = data.get("links", [])
|
||||
standardized_links = canonicalize_links_ports(links, resource_tree_set)
|
||||
|
||||
# 构建 NetworkX 图(需要转换回 dict 格式)
|
||||
@@ -300,8 +284,6 @@ def modify_to_backend_format(data: list[dict[str, Any]]) -> list[dict[str, Any]]
|
||||
edge["sourceHandle"] = port[source]
|
||||
elif "source_port" in edge:
|
||||
edge["sourceHandle"] = edge.pop("source_port")
|
||||
elif "source_handle" in edge:
|
||||
edge["sourceHandle"] = edge.pop("source_handle")
|
||||
else:
|
||||
typ = edge.get("type")
|
||||
if typ == "communication":
|
||||
@@ -310,8 +292,6 @@ def modify_to_backend_format(data: list[dict[str, Any]]) -> list[dict[str, Any]]
|
||||
edge["targetHandle"] = port[target]
|
||||
elif "target_port" in edge:
|
||||
edge["targetHandle"] = edge.pop("target_port")
|
||||
elif "target_handle" in edge:
|
||||
edge["targetHandle"] = edge.pop("target_handle")
|
||||
else:
|
||||
typ = edge.get("type")
|
||||
if typ == "communication":
|
||||
@@ -617,8 +597,6 @@ def resource_plr_to_ulab(resource_plr: "ResourcePLR", parent_name: str = None, w
|
||||
"tube": "tube",
|
||||
"bottle_carrier": "bottle_carrier",
|
||||
"plate_adapter": "plate_adapter",
|
||||
"electrode_sheet": "electrode_sheet",
|
||||
"material_hole": "material_hole",
|
||||
}
|
||||
if source in replace_info:
|
||||
return replace_info[source]
|
||||
@@ -801,6 +779,22 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
|
||||
if not locations:
|
||||
logger.debug(f"[物料位置] {unique_name} 没有location信息,跳过warehouse放置")
|
||||
|
||||
# ⭐ 预先检查:如果物料的任何location在竖向warehouse中,提前交换尺寸
|
||||
# 这样可以避免多个location时尺寸不一致的问题
|
||||
needs_size_swap = False
|
||||
for loc in locations:
|
||||
wh_name_check = loc.get("whName")
|
||||
if wh_name_check in ["站内试剂存放堆栈", "测量小瓶仓库(测密度)"]:
|
||||
needs_size_swap = True
|
||||
break
|
||||
|
||||
if needs_size_swap and hasattr(plr_material, 'size_x') and hasattr(plr_material, 'size_y'):
|
||||
original_x = plr_material.size_x
|
||||
original_y = plr_material.size_y
|
||||
plr_material.size_x = original_y
|
||||
plr_material.size_y = original_x
|
||||
logger.debug(f" 物料 {unique_name} 将放入竖向warehouse,预先交换尺寸: {original_x}×{original_y} → {plr_material.size_x}×{plr_material.size_y}")
|
||||
|
||||
for loc in locations:
|
||||
wh_name = loc.get("whName")
|
||||
logger.debug(f"[物料位置] {unique_name} 尝试放置到 warehouse: {wh_name} (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')}, z={loc.get('z')})")
|
||||
@@ -822,7 +816,6 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
|
||||
logger.debug(f"[Warehouse匹配] 找到warehouse: {wh_name} (容量: {warehouse.capacity}, 行×列: {warehouse.num_items_x}×{warehouse.num_items_y})")
|
||||
|
||||
# Bioyond坐标映射 (重要!): x→行(1=A,2=B...), y→列(1=01,2=02...), z→层(通常=1)
|
||||
# PyLabRobot warehouse是列优先存储: A01,B01,C01,D01, A02,B02,C02,D02, ...
|
||||
x = loc.get("x", 1) # 行号 (1-based: 1=A, 2=B, 3=C, 4=D)
|
||||
y = loc.get("y", 1) # 列号 (1-based: 1=01, 2=02, 3=03...)
|
||||
z = loc.get("z", 1) # 层号 (1-based, 通常为1)
|
||||
@@ -831,12 +824,23 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
|
||||
if wh_name == "堆栈1右":
|
||||
y = y - 4 # 将5-8映射到1-4
|
||||
|
||||
# 特殊处理:对于1行×N列的横向warehouse(如站内试剂存放堆栈)
|
||||
# Bioyond的y坐标表示线性位置序号,而不是列号
|
||||
if warehouse.num_items_y == 1:
|
||||
# 1行warehouse: 直接用y作为线性索引
|
||||
idx = y - 1
|
||||
logger.debug(f"1行warehouse {wh_name}: y={y} → idx={idx}")
|
||||
# 特殊处理竖向warehouse(站内试剂存放堆栈、测量小瓶仓库)
|
||||
# 这些warehouse使用 vertical-col-major 布局
|
||||
if wh_name in ["站内试剂存放堆栈", "测量小瓶仓库(测密度)"]:
|
||||
# vertical-col-major 布局的坐标映射:
|
||||
# - Bioyond的x(1=A,2=B)对应warehouse的列(col, x方向)
|
||||
# - Bioyond的y(1=01,2=02,3=03)对应warehouse的行(row, y方向),从下到上
|
||||
# vertical-col-major 中: row=0 对应底部,row=n-1 对应顶部
|
||||
# Bioyond y=1(01) 对应底部 → row=0, y=2(02) 对应中间 → row=1
|
||||
# 索引计算: idx = row * num_cols + col
|
||||
col_idx = x - 1 # Bioyond的x(A,B) → col索引(0,1)
|
||||
row_idx = y - 1 # Bioyond的y(01,02,03) → row索引(0,1,2)
|
||||
layer_idx = z - 1
|
||||
|
||||
idx = layer_idx * (warehouse.num_items_x * warehouse.num_items_y) + row_idx * warehouse.num_items_x + col_idx
|
||||
logger.debug(f"🔍 竖向warehouse {wh_name}: Bioyond(x={x},y={y},z={z}) → warehouse(col={col_idx},row={row_idx},layer={layer_idx}) → idx={idx}, capacity={warehouse.capacity}")
|
||||
|
||||
# 普通横向warehouse的处理
|
||||
else:
|
||||
# 多行warehouse: 根据 layout 使用不同的索引计算
|
||||
row_idx = x - 1 # x表示行: 转为0-based
|
||||
@@ -860,6 +864,7 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
|
||||
|
||||
if 0 <= idx < warehouse.capacity:
|
||||
if warehouse[idx] is None or isinstance(warehouse[idx], ResourceHolder):
|
||||
# 物料尺寸已在放入warehouse前根据需要进行了交换
|
||||
warehouse[idx] = plr_material
|
||||
logger.debug(f"✅ 物料 {unique_name} 放置到 {wh_name}[{idx}] (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')})")
|
||||
else:
|
||||
@@ -1033,11 +1038,24 @@ def resource_plr_to_bioyond(plr_resources: list[ResourcePLR], type_mapping: dict
|
||||
logger.debug(f" 📭 [单瓶物料] {resource.name} 无液体,使用资源名: {material_name}")
|
||||
|
||||
# 🎯 处理物料默认参数和单位
|
||||
# 检查是否有该物料名称的默认参数配置
|
||||
# 优先级: typeId参数 > 物料名称参数 > 默认值
|
||||
default_unit = "个" # 默认单位
|
||||
material_parameters = {}
|
||||
|
||||
if material_name in material_params:
|
||||
# 1️⃣ 首先检查是否有 typeId 对应的参数配置(从 material_params 中获取,key 格式为 "type:<typeId>")
|
||||
type_params_key = f"type:{type_id}"
|
||||
if type_params_key in material_params:
|
||||
params_config = material_params[type_params_key].copy()
|
||||
|
||||
# 提取 unit 字段(如果有)
|
||||
if "unit" in params_config:
|
||||
default_unit = params_config.pop("unit") # 从参数中移除,放到外层
|
||||
|
||||
# 剩余的字段放入 Parameters
|
||||
material_parameters = params_config
|
||||
logger.debug(f" 🔧 [物料参数-按typeId] 为 typeId={type_id[:8]}... 应用配置: unit={default_unit}, parameters={material_parameters}")
|
||||
# 2️⃣ 其次检查是否有该物料名称的默认参数配置
|
||||
elif material_name in material_params:
|
||||
params_config = material_params[material_name].copy()
|
||||
|
||||
# 提取 unit 字段(如果有)
|
||||
@@ -1046,7 +1064,7 @@ def resource_plr_to_bioyond(plr_resources: list[ResourcePLR], type_mapping: dict
|
||||
|
||||
# 剩余的字段放入 Parameters
|
||||
material_parameters = params_config
|
||||
logger.debug(f" 🔧 [物料参数] 为 {material_name} 应用配置: unit={default_unit}, parameters={material_parameters}")
|
||||
logger.debug(f" 🔧 [物料参数-按名称] 为 {material_name} 应用配置: unit={default_unit}, parameters={material_parameters}")
|
||||
|
||||
# 转换为 JSON 字符串
|
||||
parameters_json = json.dumps(material_parameters) if material_parameters else "{}"
|
||||
|
||||
@@ -50,13 +50,46 @@ class Bottle(Well):
|
||||
self.barcode = barcode
|
||||
|
||||
def serialize(self) -> dict:
|
||||
# Pylabrobot expects barcode to be an object with serialize(), but here it is a str.
|
||||
# We temporarily unset it to avoid AttributeError in super().serialize().
|
||||
_barcode = self.barcode
|
||||
self.barcode = None
|
||||
try:
|
||||
data = super().serialize()
|
||||
finally:
|
||||
self.barcode = _barcode
|
||||
|
||||
return {
|
||||
**super().serialize(),
|
||||
**data,
|
||||
"diameter": self.diameter,
|
||||
"height": self.height,
|
||||
"barcode": self.barcode,
|
||||
}
|
||||
|
||||
@classmethod
|
||||
def deserialize(cls, data: dict, allow_marshal: bool = False):
|
||||
# Extract barcode before calling parent deserialize to avoid type error
|
||||
barcode_data = data.pop("barcode", None)
|
||||
|
||||
# Call parent deserialize
|
||||
instance = super(Bottle, cls).deserialize(data, allow_marshal=allow_marshal)
|
||||
|
||||
# Set barcode as string (not as Barcode object)
|
||||
if barcode_data:
|
||||
if isinstance(barcode_data, str):
|
||||
instance.barcode = barcode_data
|
||||
elif isinstance(barcode_data, dict):
|
||||
# If it's a dict (Barcode serialized format), extract the data field
|
||||
instance.barcode = barcode_data.get("data", "")
|
||||
else:
|
||||
instance.barcode = ""
|
||||
|
||||
# Set additional attributes
|
||||
instance.diameter = data.get("diameter", instance._size_x)
|
||||
instance.height = data.get("height", instance._size_z)
|
||||
|
||||
return instance
|
||||
|
||||
T = TypeVar("T", bound=ResourceHolder)
|
||||
|
||||
S = TypeVar("S", bound=ResourceHolder)
|
||||
@@ -79,7 +112,6 @@ class ItemizedCarrier(ResourcePLR):
|
||||
category: Optional[str] = "carrier",
|
||||
model: Optional[str] = None,
|
||||
invisible_slots: Optional[str] = None,
|
||||
content_type: Optional[List[str]] = ["bottle", "container", "tube", "bottle_carrier", "tip_rack"],
|
||||
):
|
||||
super().__init__(
|
||||
name=name,
|
||||
@@ -93,7 +125,6 @@ class ItemizedCarrier(ResourcePLR):
|
||||
self.num_items_x, self.num_items_y, self.num_items_z = num_items_x, num_items_y, num_items_z
|
||||
self.invisible_slots = [] if invisible_slots is None else invisible_slots
|
||||
self.layout = "z-y" if self.num_items_z > 1 and self.num_items_x == 1 else "x-z" if self.num_items_z > 1 and self.num_items_y == 1 else "x-y"
|
||||
self.content_type = content_type
|
||||
|
||||
if isinstance(sites, dict):
|
||||
sites = sites or {}
|
||||
@@ -421,7 +452,7 @@ class ItemizedCarrier(ResourcePLR):
|
||||
self[identifier] if isinstance(self[identifier], str) else None,
|
||||
"position": {"x": location.x, "y": location.y, "z": location.z},
|
||||
"size": self.child_size[identifier],
|
||||
"content_type": self.content_type
|
||||
"content_type": ["bottle", "container", "tube", "bottle_carrier", "tip_rack"]
|
||||
} for identifier, location in self.child_locations.items()]
|
||||
}
|
||||
|
||||
|
||||
@@ -5,8 +5,6 @@ from pydantic import BaseModel, field_serializer, field_validator, ValidationErr
|
||||
from pydantic import Field
|
||||
from typing import List, Tuple, Any, Dict, Literal, Optional, cast, TYPE_CHECKING, Union
|
||||
|
||||
from typing_extensions import TypedDict
|
||||
|
||||
from unilabos.resources.plr_additional_res_reg import register
|
||||
from unilabos.utils.log import logger
|
||||
|
||||
@@ -15,29 +13,6 @@ if TYPE_CHECKING:
|
||||
from pylabrobot.resources import Resource as PLRResource
|
||||
|
||||
|
||||
EXTRA_CLASS = "unilabos_resource_class"
|
||||
EXTRA_SAMPLE_UUID = "sample_uuid"
|
||||
EXTRA_UNILABOS_SAMPLE_UUID = "unilabos_sample_uuid"
|
||||
|
||||
# 函数参数名常量 - 用于自动注入 sample_uuids 列表
|
||||
PARAM_SAMPLE_UUIDS = "sample_uuids"
|
||||
|
||||
# JSON Command 中的系统参数字段名
|
||||
JSON_UNILABOS_PARAM = "unilabos_param"
|
||||
|
||||
# 返回值中的 samples 字段名
|
||||
RETURN_UNILABOS_SAMPLES = "unilabos_samples"
|
||||
|
||||
# sample_uuids 参数类型 (用于 virtual bench 等设备添加 sample_uuids 参数)
|
||||
SampleUUIDsType = Dict[str, Optional["PLRResource"]]
|
||||
|
||||
|
||||
class LabSample(TypedDict):
|
||||
sample_uuid: str
|
||||
oss_path: str
|
||||
extra: Dict[str, Any]
|
||||
|
||||
|
||||
class ResourceDictPositionSize(BaseModel):
|
||||
depth: float = Field(description="Depth", default=0.0) # z
|
||||
width: float = Field(description="Width", default=0.0) # x
|
||||
@@ -418,7 +393,7 @@ class ResourceTreeSet(object):
|
||||
"parent": parent_resource, # 直接传入 ResourceDict 对象
|
||||
"parent_uuid": parent_uuid, # 使用 parent_uuid 而不是 parent 对象
|
||||
"type": replace_plr_type(d.get("category", "")),
|
||||
"class": extra.get(EXTRA_CLASS, ""),
|
||||
"class": d.get("class", ""),
|
||||
"position": pos,
|
||||
"pose": pos,
|
||||
"config": {
|
||||
@@ -468,7 +443,7 @@ class ResourceTreeSet(object):
|
||||
trees.append(tree_instance)
|
||||
return cls(trees)
|
||||
|
||||
def to_plr_resources(self, skip_devices=True) -> List["PLRResource"]:
|
||||
def to_plr_resources(self) -> List["PLRResource"]:
|
||||
"""
|
||||
将 ResourceTreeSet 转换为 PLR 资源列表
|
||||
|
||||
@@ -493,7 +468,6 @@ class ResourceTreeSet(object):
|
||||
name_to_uuid[node.res_content.name] = node.res_content.uuid
|
||||
all_states[node.res_content.name] = node.res_content.data
|
||||
name_to_extra[node.res_content.name] = node.res_content.extra
|
||||
name_to_extra[node.res_content.name][EXTRA_CLASS] = node.res_content.klass
|
||||
for child in node.children:
|
||||
collect_node_data(child, name_to_uuid, all_states, name_to_extra)
|
||||
|
||||
@@ -538,10 +512,7 @@ class ResourceTreeSet(object):
|
||||
plr_dict = node_to_plr_dict(tree.root_node, has_model)
|
||||
try:
|
||||
sub_cls = find_subclass(plr_dict["type"], PLRResource)
|
||||
if skip_devices and plr_dict["type"] == "device":
|
||||
logger.info(f"跳过更新 {plr_dict['name']} 设备是class")
|
||||
continue
|
||||
elif sub_cls is None:
|
||||
if sub_cls is None:
|
||||
raise ValueError(
|
||||
f"无法找到类型 {plr_dict['type']} 对应的 PLR 资源类。原始信息:{tree.root_node.res_content}"
|
||||
)
|
||||
@@ -549,11 +520,6 @@ class ResourceTreeSet(object):
|
||||
if "category" not in spec.parameters:
|
||||
plr_dict.pop("category", None)
|
||||
plr_resource = sub_cls.deserialize(plr_dict, allow_marshal=True)
|
||||
from pylabrobot.resources import Coordinate
|
||||
from pylabrobot.serializer import deserialize
|
||||
|
||||
location = cast(Coordinate, deserialize(plr_dict["location"]))
|
||||
plr_resource.location = location
|
||||
plr_resource.load_all_state(all_states)
|
||||
# 使用 DeviceNodeResourceTracker 设置 UUID 和 Extra
|
||||
tracker.loop_set_uuid(plr_resource, name_to_uuid)
|
||||
@@ -655,6 +621,16 @@ class ResourceTreeSet(object):
|
||||
"""
|
||||
return [tree.root_node for tree in self.trees]
|
||||
|
||||
@property
|
||||
def root_nodes_uuid(self) -> List[ResourceDictInstance]:
|
||||
"""
|
||||
获取所有树的根节点
|
||||
|
||||
Returns:
|
||||
所有根节点的资源实例列表
|
||||
"""
|
||||
return [tree.root_node.res_content.uuid for tree in self.trees]
|
||||
|
||||
@property
|
||||
def all_nodes(self) -> List[ResourceDictInstance]:
|
||||
"""
|
||||
@@ -1010,7 +986,7 @@ class DeviceNodeResourceTracker(object):
|
||||
extra = name_to_extra_map[resource_name]
|
||||
self.set_resource_extra(res, extra)
|
||||
if len(extra):
|
||||
logger.trace(f"设置资源Extra: {resource_name} -> {extra}")
|
||||
logger.debug(f"设置资源Extra: {resource_name} -> {extra}")
|
||||
return 1
|
||||
return 0
|
||||
|
||||
|
||||
@@ -42,6 +42,10 @@ def warehouse_factory(
|
||||
if layout == "row-major":
|
||||
# 行优先:row=0(A行) 应该显示在上方,需要较小的 y 值
|
||||
y = dy + row * item_dy
|
||||
elif layout == "vertical-col-major":
|
||||
# 竖向warehouse: row=0 对应顶部(y小),row=n-1 对应底部(y大)
|
||||
# 但标签 01 应该在底部,所以使用反向映射
|
||||
y = dy + (num_items_y - row - 1) * item_dy
|
||||
else:
|
||||
# 列优先:保持原逻辑(row=0 对应较大的 y)
|
||||
y = dy + (num_items_y - row - 1) * item_dy
|
||||
@@ -66,6 +70,14 @@ def warehouse_factory(
|
||||
# 行优先顺序: A01,A02,A03,A04, B01,B02,B03,B04
|
||||
# locations[0] 对应 row=0, y最大(前端顶部)→ 应该是 A01
|
||||
keys = [f"{LETTERS[j]}{i + 1 + col_offset:02d}" for j in range(len_y) for i in range(len_x)]
|
||||
elif layout == "vertical-col-major":
|
||||
# ⭐ 竖向warehouse专用布局:
|
||||
# 字母(A,B,C...)对应列(横向, x方向),数字(01,02,03...)对应行(竖向, y方向,从下到上)
|
||||
# locations 生成顺序: row→col (row=0,col=0 → row=0,col=1 → row=1,col=0 → ...)
|
||||
# 其中 row=0 对应底部(y大),row=n-1 对应顶部(y小)
|
||||
# 标签中 01 对应底部(row=0),02 对应中间(row=1),03 对应顶部(row=2)
|
||||
# 标签顺序: A01,B01,A02,B02,A03,B03
|
||||
keys = [f"{LETTERS[col]}{row + 1 + col_offset:02d}" for row in range(len_y) for col in range(len_x)]
|
||||
else:
|
||||
# 列优先顺序: A01,B01,C01,D01, A02,B02,C02,D02
|
||||
keys = [f"{LETTERS[j]}{i + 1 + col_offset:02d}" for i in range(len_x) for j in range(len_y)]
|
||||
|
||||
@@ -361,14 +361,7 @@ def convert_to_ros_msg(ros_msg_type: Union[Type, Any], obj: Any) -> Any:
|
||||
if hasattr(ros_msg, key):
|
||||
attr = getattr(ros_msg, key)
|
||||
if isinstance(attr, (float, int, str, bool)):
|
||||
# 处理list类型的值,取第一个元素或抛出错误
|
||||
if isinstance(value, list):
|
||||
if len(value) > 0:
|
||||
setattr(ros_msg, key, type(attr)(value[0]))
|
||||
else:
|
||||
setattr(ros_msg, key, type(attr)()) # 使用默认值
|
||||
else:
|
||||
setattr(ros_msg, key, type(attr)(value))
|
||||
setattr(ros_msg, key, type(attr)(value))
|
||||
elif isinstance(attr, (list, tuple)) and isinstance(value, Iterable):
|
||||
td = ros_msg.SLOT_TYPES[ind].value_type
|
||||
if isinstance(td, NamespacedType):
|
||||
@@ -381,35 +374,9 @@ def convert_to_ros_msg(ros_msg_type: Union[Type, Any], obj: Any) -> Any:
|
||||
setattr(ros_msg, key, []) # FIXME
|
||||
elif "array.array" in str(type(attr)):
|
||||
if attr.typecode == "f" or attr.typecode == "d":
|
||||
# 如果是单个值,转换为列表
|
||||
if value is None:
|
||||
value = []
|
||||
elif not isinstance(value, Iterable) or isinstance(value, (str, bytes)):
|
||||
value = [value]
|
||||
setattr(ros_msg, key, [float(i) for i in value])
|
||||
else:
|
||||
# 对于整数数组,需要确保是序列且每个值在有效范围内
|
||||
if value is None:
|
||||
value = []
|
||||
elif not isinstance(value, Iterable) or isinstance(value, (str, bytes)):
|
||||
# 如果是单个值,转换为列表
|
||||
value = [value]
|
||||
# 确保每个整数值在有效范围内(-2147483648 到 2147483647)
|
||||
converted_value = []
|
||||
for i in value:
|
||||
if i is None:
|
||||
continue # 跳过 None 值
|
||||
if isinstance(i, (int, float)):
|
||||
int_val = int(i)
|
||||
# 确保在 int32 范围内
|
||||
if int_val < -2147483648:
|
||||
int_val = -2147483648
|
||||
elif int_val > 2147483647:
|
||||
int_val = 2147483647
|
||||
converted_value.append(int_val)
|
||||
else:
|
||||
converted_value.append(i)
|
||||
setattr(ros_msg, key, converted_value)
|
||||
setattr(ros_msg, key, value)
|
||||
else:
|
||||
nested_ros_msg = convert_to_ros_msg(type(attr)(), value)
|
||||
setattr(ros_msg, key, nested_ros_msg)
|
||||
|
||||
@@ -4,20 +4,8 @@ import json
|
||||
import threading
|
||||
import time
|
||||
import traceback
|
||||
from typing import (
|
||||
get_type_hints,
|
||||
TypeVar,
|
||||
Generic,
|
||||
Dict,
|
||||
Any,
|
||||
Type,
|
||||
TypedDict,
|
||||
Optional,
|
||||
List,
|
||||
TYPE_CHECKING,
|
||||
Union,
|
||||
Tuple,
|
||||
)
|
||||
from typing import get_type_hints, TypeVar, Generic, Dict, Any, Type, TypedDict, Optional, List, TYPE_CHECKING, Union, \
|
||||
Tuple
|
||||
|
||||
from concurrent.futures import ThreadPoolExecutor
|
||||
import asyncio
|
||||
@@ -60,10 +48,8 @@ from unilabos.resources.resource_tracker import (
|
||||
ResourceTreeSet,
|
||||
ResourceTreeInstance,
|
||||
ResourceDictInstance,
|
||||
EXTRA_SAMPLE_UUID,
|
||||
PARAM_SAMPLE_UUIDS,
|
||||
JSON_UNILABOS_PARAM,
|
||||
)
|
||||
from unilabos.ros.x.rclpyx import get_event_loop
|
||||
from unilabos.ros.utils.driver_creator import WorkstationNodeCreator, PyLabRobotCreator, DeviceClassCreator
|
||||
from rclpy.task import Task, Future
|
||||
from unilabos.utils.import_manager import default_manager
|
||||
@@ -199,7 +185,7 @@ class PropertyPublisher:
|
||||
f"创建发布者 {name} 失败,可能由于注册表有误,类型: {msg_type},错误: {ex}\n{traceback.format_exc()}"
|
||||
)
|
||||
self.timer = node.create_timer(self.timer_period, self.publish_property)
|
||||
self.__loop = ROS2DeviceNode.get_asyncio_loop()
|
||||
self.__loop = get_event_loop()
|
||||
str_msg_type = str(msg_type)[8:-2]
|
||||
self.node.lab_logger().trace(f"发布属性: {name}, 类型: {str_msg_type}, 周期: {initial_period}秒, QoS: {qos}")
|
||||
|
||||
@@ -231,15 +217,14 @@ class PropertyPublisher:
|
||||
|
||||
def publish_property(self):
|
||||
try:
|
||||
# self.node.lab_logger().trace(f"【.publish_property】开始发布属性: {self.name}")
|
||||
self.node.lab_logger().trace(f"【.publish_property】开始发布属性: {self.name}")
|
||||
value = self.get_property()
|
||||
if self.print_publish:
|
||||
pass
|
||||
# self.node.lab_logger().trace(f"【.publish_property】发布 {self.msg_type}: {value}")
|
||||
self.node.lab_logger().trace(f"【.publish_property】发布 {self.msg_type}: {value}")
|
||||
if value is not None:
|
||||
msg = convert_to_ros_msg(self.msg_type, value)
|
||||
self.publisher_.publish(msg)
|
||||
# self.node.lab_logger().trace(f"【.publish_property】属性 {self.name} 发布成功")
|
||||
self.node.lab_logger().trace(f"【.publish_property】属性 {self.name} 发布成功")
|
||||
except Exception as e:
|
||||
self.node.lab_logger().error(
|
||||
f"【.publish_property】发布属性 {self.publisher_.topic} 出错: {str(e)}\n{traceback.format_exc()}"
|
||||
@@ -377,7 +362,6 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
from pylabrobot.resources.deck import Deck
|
||||
from pylabrobot.resources import Coordinate
|
||||
from pylabrobot.resources import Plate
|
||||
|
||||
# 物料传输到对应的node节点
|
||||
client = self._resource_clients["c2s_update_resource_tree"]
|
||||
request = SerialCommand.Request()
|
||||
@@ -405,27 +389,30 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
rts: ResourceTreeSet = ResourceTreeSet.from_raw_dict_list(input_resources)
|
||||
parent_resource = None
|
||||
if bind_parent_id != self.node_name:
|
||||
parent_resource = self.resource_tracker.figure_resource({"name": bind_parent_id})
|
||||
for r in rts.root_nodes:
|
||||
# noinspection PyUnresolvedReferences
|
||||
r.res_content.parent_uuid = parent_resource.unilabos_uuid
|
||||
else:
|
||||
for r in rts.root_nodes:
|
||||
r.res_content.parent_uuid = self.uuid
|
||||
rts_plr_instances = rts.to_plr_resources()
|
||||
if len(rts.root_nodes) == 1 and isinstance(rts_plr_instances[0], RegularContainer):
|
||||
parent_resource = self.resource_tracker.figure_resource(
|
||||
{"name": bind_parent_id}
|
||||
)
|
||||
for r in rts.root_nodes:
|
||||
# noinspection PyUnresolvedReferences
|
||||
r.res_content.parent_uuid = parent_resource.unilabos_uuid
|
||||
|
||||
if len(LIQUID_INPUT_SLOT) and LIQUID_INPUT_SLOT[0] == -1 and len(rts.root_nodes) == 1 and isinstance(rts.root_nodes[0], RegularContainer):
|
||||
# noinspection PyTypeChecker
|
||||
container_instance: RegularContainer = rts_plr_instances[0]
|
||||
found_resources = self.resource_tracker.figure_resource({"name": container_instance.name}, try_mode=True)
|
||||
container_instance: RegularContainer = rts.root_nodes[0]
|
||||
found_resources = self.resource_tracker.figure_resource(
|
||||
{"id": container_instance.name}, try_mode=True
|
||||
)
|
||||
if not len(found_resources):
|
||||
self.resource_tracker.add_resource(container_instance)
|
||||
logger.info(f"添加物料{container_instance.name}到资源跟踪器")
|
||||
else:
|
||||
assert len(found_resources) == 1, f"找到多个同名物料: {container_instance.name}, 请检查物料系统"
|
||||
assert (
|
||||
len(found_resources) == 1
|
||||
), f"找到多个同名物料: {container_instance.name}, 请检查物料系统"
|
||||
found_resource = found_resources[0]
|
||||
if isinstance(found_resource, RegularContainer):
|
||||
logger.info(f"更新物料{container_instance.name}的数据{found_resource.state}")
|
||||
found_resource.state.update(container_instance.state)
|
||||
found_resource.state.update(json.loads(container_instance.state))
|
||||
elif isinstance(found_resource, dict):
|
||||
raise ValueError("已不支持 字典 版本的RegularContainer")
|
||||
else:
|
||||
@@ -433,16 +420,14 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
f"更新物料{container_instance.name}出现不支持的数据类型{type(found_resource)} {found_resource}"
|
||||
)
|
||||
# noinspection PyUnresolvedReferences
|
||||
request.command = json.dumps(
|
||||
{
|
||||
"action": "add",
|
||||
"data": {
|
||||
"data": rts.dump(),
|
||||
"mount_uuid": parent_resource.unilabos_uuid if parent_resource is not None else self.uuid,
|
||||
"first_add": False,
|
||||
},
|
||||
}
|
||||
)
|
||||
request.command = json.dumps({
|
||||
"action": "add",
|
||||
"data": {
|
||||
"data": rts.dump(),
|
||||
"mount_uuid": parent_resource.unilabos_uuid if parent_resource is not None else "",
|
||||
"first_add": False,
|
||||
},
|
||||
})
|
||||
tree_response: SerialCommand.Response = await client.call_async(request)
|
||||
uuid_maps = json.loads(tree_response.response)
|
||||
plr_instances = rts.to_plr_resources()
|
||||
@@ -484,9 +469,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
if len(ADD_LIQUID_TYPE) == 1 and len(LIQUID_VOLUME) == 1 and len(LIQUID_INPUT_SLOT) > 1:
|
||||
ADD_LIQUID_TYPE = ADD_LIQUID_TYPE * len(LIQUID_INPUT_SLOT)
|
||||
LIQUID_VOLUME = LIQUID_VOLUME * len(LIQUID_INPUT_SLOT)
|
||||
self.lab_logger().warning(
|
||||
f"增加液体资源时,数量为1,自动补全为 {len(LIQUID_INPUT_SLOT)} 个"
|
||||
)
|
||||
self.lab_logger().warning(f"增加液体资源时,数量为1,自动补全为 {len(LIQUID_INPUT_SLOT)} 个")
|
||||
for liquid_type, liquid_volume, liquid_input_slot in zip(
|
||||
ADD_LIQUID_TYPE, LIQUID_VOLUME, LIQUID_INPUT_SLOT
|
||||
):
|
||||
@@ -505,15 +488,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
input_wells = []
|
||||
for r in LIQUID_INPUT_SLOT:
|
||||
input_wells.append(plr_instance.children[r])
|
||||
final_response["liquid_input_resource_tree"] = ResourceTreeSet.from_plr_resources(
|
||||
input_wells
|
||||
).dump()
|
||||
final_response["liquid_input_resource_tree"] = ResourceTreeSet.from_plr_resources(input_wells).dump()
|
||||
res.response = json.dumps(final_response)
|
||||
if (
|
||||
issubclass(parent_resource.__class__, Deck)
|
||||
and hasattr(parent_resource, "assign_child_at_slot")
|
||||
and "slot" in other_calling_param
|
||||
):
|
||||
if issubclass(parent_resource.__class__, Deck) and hasattr(parent_resource, "assign_child_at_slot") and "slot" in other_calling_param:
|
||||
other_calling_param["slot"] = int(other_calling_param["slot"])
|
||||
parent_resource.assign_child_at_slot(plr_instance, **other_calling_param)
|
||||
else:
|
||||
@@ -528,16 +505,14 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
rts_with_parent = ResourceTreeSet.from_plr_resources([parent_resource])
|
||||
if rts_with_parent.root_nodes[0].res_content.uuid_parent is None:
|
||||
rts_with_parent.root_nodes[0].res_content.parent_uuid = self.uuid
|
||||
request.command = json.dumps(
|
||||
{
|
||||
"action": "add",
|
||||
"data": {
|
||||
"data": rts_with_parent.dump(),
|
||||
"mount_uuid": rts_with_parent.root_nodes[0].res_content.uuid_parent,
|
||||
"first_add": False,
|
||||
},
|
||||
}
|
||||
)
|
||||
request.command = json.dumps({
|
||||
"action": "add",
|
||||
"data": {
|
||||
"data": rts_with_parent.dump(),
|
||||
"mount_uuid": rts_with_parent.root_nodes[0].res_content.uuid_parent,
|
||||
"first_add": False,
|
||||
},
|
||||
})
|
||||
tree_response: SerialCommand.Response = await client.call_async(request)
|
||||
uuid_maps = json.loads(tree_response.response)
|
||||
self.resource_tracker.loop_update_uuid(input_resources, uuid_maps)
|
||||
@@ -834,9 +809,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
}
|
||||
|
||||
def _handle_update(
|
||||
plr_resources: List[Union[ResourcePLR, ResourceDictInstance]],
|
||||
tree_set: ResourceTreeSet,
|
||||
additional_add_params: Dict[str, Any],
|
||||
plr_resources: List[Union[ResourcePLR, ResourceDictInstance]], tree_set: ResourceTreeSet, additional_add_params: Dict[str, Any]
|
||||
) -> Tuple[Dict[str, Any], List[ResourcePLR]]:
|
||||
"""
|
||||
处理资源更新操作的内部函数
|
||||
@@ -861,10 +834,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
original_parent_resource = original_instance.parent
|
||||
original_parent_resource_uuid = getattr(original_parent_resource, "unilabos_uuid", None)
|
||||
target_parent_resource_uuid = tree.root_node.res_content.uuid_parent
|
||||
not_same_parent = (
|
||||
original_parent_resource_uuid != target_parent_resource_uuid
|
||||
and original_parent_resource is not None
|
||||
)
|
||||
not_same_parent = original_parent_resource_uuid != target_parent_resource_uuid and original_parent_resource is not None
|
||||
old_name = original_instance.name
|
||||
new_name = plr_resource.name
|
||||
parent_appended = False
|
||||
@@ -900,16 +870,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
else:
|
||||
# 判断是否变更了resource_site,重新登记
|
||||
target_site = original_instance.unilabos_extra.get("update_resource_site")
|
||||
sites = (
|
||||
original_instance.parent.sites
|
||||
if original_instance.parent is not None and hasattr(original_instance.parent, "sites")
|
||||
else None
|
||||
)
|
||||
site_names = (
|
||||
list(original_instance.parent._ordering.keys())
|
||||
if original_instance.parent is not None and hasattr(original_instance.parent, "sites")
|
||||
else []
|
||||
)
|
||||
sites = original_instance.parent.sites if original_instance.parent is not None and hasattr(original_instance.parent, "sites") else None
|
||||
site_names = list(original_instance.parent._ordering.keys()) if original_instance.parent is not None and hasattr(original_instance.parent, "sites") else []
|
||||
if target_site is not None and sites is not None and site_names is not None:
|
||||
site_index = sites.index(original_instance)
|
||||
site_name = site_names[site_index]
|
||||
@@ -920,9 +882,6 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
parent_appended = True
|
||||
|
||||
# 加载状态
|
||||
original_instance.location = plr_resource.location
|
||||
original_instance.rotation = plr_resource.rotation
|
||||
original_instance.barcode = plr_resource.barcode
|
||||
original_instance.load_all_state(states)
|
||||
child_count = len(original_instance.get_all_children())
|
||||
self.lab_logger().info(
|
||||
@@ -946,7 +905,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
action = i.get("action") # remove, add, update
|
||||
resources_uuid: List[str] = i.get("data") # 资源数据
|
||||
additional_add_params = i.get("additional_add_params", {}) # 额外参数
|
||||
self.lab_logger().trace(f"[资源同步] 处理 {action}, " f"resources count: {len(resources_uuid)}")
|
||||
self.lab_logger().trace(
|
||||
f"[资源同步] 处理 {action}, " f"resources count: {len(resources_uuid)}"
|
||||
)
|
||||
tree_set = None
|
||||
if action in ["add", "update"]:
|
||||
tree_set = await self.get_resource(
|
||||
@@ -973,13 +934,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
tree.root_node.res_content.parent_uuid = self.uuid
|
||||
r = SerialCommand.Request()
|
||||
r.command = json.dumps(
|
||||
{"data": {"data": new_tree_set.dump()}, "action": "update"}
|
||||
) # 和Update Resource一致
|
||||
{"data": {"data": new_tree_set.dump()}, "action": "update"}) # 和Update Resource一致
|
||||
response: SerialCommand_Response = await self._resource_clients[
|
||||
"c2s_update_resource_tree"
|
||||
].call_async(
|
||||
r
|
||||
) # type: ignore
|
||||
"c2s_update_resource_tree"].call_async(r) # type: ignore
|
||||
self.lab_logger().info(f"确认资源云端 Add 结果: {response.response}")
|
||||
results.append(result)
|
||||
elif action == "update":
|
||||
@@ -999,13 +956,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
tree.root_node.res_content.parent_uuid = self.uuid
|
||||
r = SerialCommand.Request()
|
||||
r.command = json.dumps(
|
||||
{"data": {"data": new_tree_set.dump()}, "action": "update"}
|
||||
) # 和Update Resource一致
|
||||
{"data": {"data": new_tree_set.dump()}, "action": "update"}) # 和Update Resource一致
|
||||
response: SerialCommand_Response = await self._resource_clients[
|
||||
"c2s_update_resource_tree"
|
||||
].call_async(
|
||||
r
|
||||
) # type: ignore
|
||||
"c2s_update_resource_tree"].call_async(r) # type: ignore
|
||||
self.lab_logger().info(f"确认资源云端 Update 结果: {response.response}")
|
||||
results.append(result)
|
||||
elif action == "remove":
|
||||
@@ -1364,41 +1317,26 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
resource_inputs = action_kwargs[k] if is_sequence else [action_kwargs[k]]
|
||||
|
||||
# 批量查询资源
|
||||
queried_resources: list = [None] * len(resource_inputs)
|
||||
uuid_indices: list[tuple[int, str, dict]] = [] # (index, uuid, resource_data)
|
||||
|
||||
# 第一遍:处理没有uuid的资源,收集有uuid的资源信息
|
||||
for idx, resource_data in enumerate(resource_inputs):
|
||||
queried_resources = []
|
||||
for resource_data in resource_inputs:
|
||||
unilabos_uuid = resource_data.get("data", {}).get("unilabos_uuid")
|
||||
if unilabos_uuid is None:
|
||||
plr_resource = await self.get_resource_with_dir(
|
||||
resource_id=resource_data["id"], with_children=True
|
||||
)
|
||||
if "sample_id" in resource_data:
|
||||
plr_resource.unilabos_extra[EXTRA_SAMPLE_UUID] = resource_data["sample_id"]
|
||||
queried_resources[idx] = plr_resource
|
||||
else:
|
||||
uuid_indices.append((idx, unilabos_uuid, resource_data))
|
||||
|
||||
# 第二遍:批量查询有uuid的资源
|
||||
if uuid_indices:
|
||||
uuids = [item[1] for item in uuid_indices]
|
||||
resource_tree = await self.get_resource(uuids)
|
||||
plr_resources = resource_tree.to_plr_resources()
|
||||
for i, (idx, _, resource_data) in enumerate(uuid_indices):
|
||||
plr_resource = plr_resources[i]
|
||||
if "sample_id" in resource_data:
|
||||
plr_resource.unilabos_extra[EXTRA_SAMPLE_UUID] = resource_data["sample_id"]
|
||||
queried_resources[idx] = plr_resource
|
||||
resource_tree = await self.get_resource([unilabos_uuid])
|
||||
plr_resource = resource_tree.to_plr_resources()[0]
|
||||
if "sample_id" in resource_data:
|
||||
plr_resource.unilabos_extra["sample_uuid"] = resource_data["sample_id"]
|
||||
queried_resources.append(plr_resource)
|
||||
|
||||
self.lab_logger().debug(f"资源查询结果: 共 {len(queried_resources)} 个资源")
|
||||
|
||||
# 通过资源跟踪器获取本地实例
|
||||
final_resources = queried_resources if is_sequence else queried_resources[0]
|
||||
if not is_sequence:
|
||||
plr = self.resource_tracker.figure_resource(
|
||||
{"name": final_resources.name}, try_mode=False
|
||||
)
|
||||
plr = self.resource_tracker.figure_resource({"name": final_resources.name}, try_mode=False)
|
||||
# 保留unilabos_extra
|
||||
if hasattr(final_resources, "unilabos_extra") and hasattr(plr, "unilabos_extra"):
|
||||
plr.unilabos_extra = getattr(final_resources, "unilabos_extra", {}).copy()
|
||||
@@ -1437,12 +1375,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
execution_success = True
|
||||
except Exception as _:
|
||||
execution_error = traceback.format_exc()
|
||||
error(
|
||||
f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{str(action_kwargs)[:1000]}"
|
||||
)
|
||||
trace(
|
||||
f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}"
|
||||
)
|
||||
error(f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{str(action_kwargs)[:1000]}")
|
||||
trace(f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}")
|
||||
|
||||
future = ROS2DeviceNode.run_async_func(ACTION, trace_error=False, **action_kwargs)
|
||||
future.add_done_callback(_handle_future_exception)
|
||||
@@ -1462,11 +1396,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
except Exception as _:
|
||||
execution_error = traceback.format_exc()
|
||||
error(
|
||||
f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{str(action_kwargs)[:1000]}"
|
||||
)
|
||||
f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{str(action_kwargs)[:1000]}")
|
||||
trace(
|
||||
f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}"
|
||||
)
|
||||
f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入:{action_kwargs}")
|
||||
|
||||
future.add_done_callback(_handle_future_exception)
|
||||
|
||||
@@ -1533,18 +1465,11 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
if isinstance(rs, list):
|
||||
for r in rs:
|
||||
res = self.resource_tracker.parent_resource(r) # 获取 resource 对象
|
||||
if res is None:
|
||||
res = rs
|
||||
if id(res) not in seen:
|
||||
seen.add(id(res))
|
||||
unique_resources.append(res)
|
||||
else:
|
||||
res = self.resource_tracker.parent_resource(rs)
|
||||
if res is None:
|
||||
res = rs
|
||||
if id(res) not in seen:
|
||||
seen.add(id(res))
|
||||
unique_resources.append(res)
|
||||
if id(res) not in seen:
|
||||
seen.add(id(res))
|
||||
unique_resources.append(res)
|
||||
|
||||
# 使用新的资源树接口
|
||||
if unique_resources:
|
||||
@@ -1596,39 +1521,20 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
try:
|
||||
function_name = target["function_name"]
|
||||
function_args = target["function_args"]
|
||||
# 获取 unilabos 系统参数
|
||||
unilabos_param: Dict[str, Any] = target[JSON_UNILABOS_PARAM]
|
||||
|
||||
assert isinstance(function_args, dict), "执行动作时JSON必须为dict类型\n原JSON: {string}"
|
||||
function = getattr(self.driver_instance, function_name)
|
||||
assert callable(
|
||||
function
|
||||
), f"执行动作时JSON中的function_name对应的函数不可调用: {function_name}\n原JSON: {string}"
|
||||
|
||||
# 处理参数(包含 unilabos 系统参数如 sample_uuids)
|
||||
args_list = default_manager._analyze_method_signature(function, skip_unilabos_params=False)["args"]
|
||||
# 处理 ResourceSlot 类型参数
|
||||
args_list = default_manager._analyze_method_signature(function)["args"]
|
||||
for arg in args_list:
|
||||
arg_name = arg["name"]
|
||||
arg_type = arg["type"]
|
||||
|
||||
# 跳过不在 function_args 中的参数
|
||||
if arg_name not in function_args:
|
||||
# 处理 sample_uuids 参数注入
|
||||
if arg_name == PARAM_SAMPLE_UUIDS:
|
||||
raw_sample_uuids = unilabos_param.get(PARAM_SAMPLE_UUIDS, {})
|
||||
# 将 material uuid 转换为 resource 实例
|
||||
# key: sample_uuid, value: material_uuid -> resource 实例
|
||||
resolved_sample_uuids: Dict[str, Any] = {}
|
||||
for sample_uuid, material_uuid in raw_sample_uuids.items():
|
||||
if material_uuid and self.resource_tracker:
|
||||
resource = self.resource_tracker.uuid_to_resources.get(material_uuid)
|
||||
resolved_sample_uuids[sample_uuid] = resource if resource else material_uuid
|
||||
else:
|
||||
resolved_sample_uuids[sample_uuid] = material_uuid
|
||||
function_args[PARAM_SAMPLE_UUIDS] = resolved_sample_uuids
|
||||
self.lab_logger().debug(
|
||||
f"[JsonCommand] 注入 {PARAM_SAMPLE_UUIDS}: {resolved_sample_uuids}"
|
||||
)
|
||||
continue
|
||||
|
||||
# 处理单个 ResourceSlot
|
||||
@@ -1658,7 +1564,6 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
)
|
||||
raise JsonCommandInitError(f"ResourceSlot列表参数转换失败: {arg_name}")
|
||||
|
||||
# todo: 默认反报送
|
||||
return function(**function_args)
|
||||
except KeyError as ex:
|
||||
raise JsonCommandInitError(
|
||||
@@ -1678,23 +1583,21 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
raise ValueError("至少需要提供一个 UUID")
|
||||
|
||||
uuids_list = list(uuids)
|
||||
future = self._resource_clients["c2s_update_resource_tree"].call_async(
|
||||
SerialCommand.Request(
|
||||
command=json.dumps(
|
||||
{
|
||||
"data": {"data": uuids_list, "with_children": True},
|
||||
"action": "get",
|
||||
}
|
||||
)
|
||||
future = self._resource_clients["c2s_update_resource_tree"].call_async(SerialCommand.Request(
|
||||
command=json.dumps(
|
||||
{
|
||||
"data": {"data": uuids_list, "with_children": True},
|
||||
"action": "get",
|
||||
}
|
||||
)
|
||||
)
|
||||
))
|
||||
|
||||
# 等待结果(使用while循环,每次sleep 0.05秒,最多等待30秒)
|
||||
timeout = 30.0
|
||||
elapsed = 0.0
|
||||
while not future.done() and elapsed < timeout:
|
||||
time.sleep(0.02)
|
||||
elapsed += 0.02
|
||||
time.sleep(0.05)
|
||||
elapsed += 0.05
|
||||
|
||||
if not future.done():
|
||||
raise Exception(f"资源查询超时: {uuids_list}")
|
||||
@@ -1745,9 +1648,6 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
try:
|
||||
function_name = target["function_name"]
|
||||
function_args = target["function_args"]
|
||||
# 获取 unilabos 系统参数
|
||||
unilabos_param: Dict[str, Any] = target.get(JSON_UNILABOS_PARAM, {})
|
||||
|
||||
assert isinstance(function_args, dict), "执行动作时JSON必须为dict类型\n原JSON: {string}"
|
||||
function = getattr(self.driver_instance, function_name)
|
||||
assert callable(
|
||||
@@ -1757,30 +1657,14 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
function
|
||||
), f"执行动作时JSON中的function并非异步: {function_name}\n原JSON: {string}"
|
||||
|
||||
# 处理参数(包含 unilabos 系统参数如 sample_uuids)
|
||||
args_list = default_manager._analyze_method_signature(function, skip_unilabos_params=False)["args"]
|
||||
# 处理 ResourceSlot 类型参数
|
||||
args_list = default_manager._analyze_method_signature(function)["args"]
|
||||
for arg in args_list:
|
||||
arg_name = arg["name"]
|
||||
arg_type = arg["type"]
|
||||
|
||||
# 跳过不在 function_args 中的参数
|
||||
if arg_name not in function_args:
|
||||
# 处理 sample_uuids 参数注入
|
||||
if arg_name == PARAM_SAMPLE_UUIDS:
|
||||
raw_sample_uuids = unilabos_param.get(PARAM_SAMPLE_UUIDS, {})
|
||||
# 将 material uuid 转换为 resource 实例
|
||||
# key: sample_uuid, value: material_uuid -> resource 实例
|
||||
resolved_sample_uuids: Dict[str, Any] = {}
|
||||
for sample_uuid, material_uuid in raw_sample_uuids.items():
|
||||
if material_uuid and self.resource_tracker:
|
||||
resource = self.resource_tracker.uuid_to_resources.get(material_uuid)
|
||||
resolved_sample_uuids[sample_uuid] = resource if resource else material_uuid
|
||||
else:
|
||||
resolved_sample_uuids[sample_uuid] = material_uuid
|
||||
function_args[PARAM_SAMPLE_UUIDS] = resolved_sample_uuids
|
||||
self.lab_logger().debug(
|
||||
f"[JsonCommandAsync] 注入 {PARAM_SAMPLE_UUIDS}: {resolved_sample_uuids}"
|
||||
)
|
||||
continue
|
||||
|
||||
# 处理单个 ResourceSlot
|
||||
@@ -1870,15 +1754,6 @@ class ROS2DeviceNode:
|
||||
它不继承设备类,而是通过代理模式访问设备类的属性和方法。
|
||||
"""
|
||||
|
||||
# 类变量,用于循环管理
|
||||
_asyncio_loop = None
|
||||
_asyncio_loop_running = False
|
||||
_asyncio_loop_thread = None
|
||||
|
||||
@classmethod
|
||||
def get_asyncio_loop(cls):
|
||||
return cls._asyncio_loop
|
||||
|
||||
@staticmethod
|
||||
async def safe_task_wrapper(trace_callback, func, **kwargs):
|
||||
try:
|
||||
@@ -1955,11 +1830,6 @@ class ROS2DeviceNode:
|
||||
print_publish: 是否打印发布信息
|
||||
driver_is_ros:
|
||||
"""
|
||||
# 在初始化时检查循环状态
|
||||
if ROS2DeviceNode._asyncio_loop_running and ROS2DeviceNode._asyncio_loop_thread is not None:
|
||||
pass
|
||||
elif ROS2DeviceNode._asyncio_loop_thread is None:
|
||||
self._start_loop()
|
||||
|
||||
# 保存设备类是否支持异步上下文
|
||||
self._has_async_context = hasattr(driver_class, "__aenter__") and hasattr(driver_class, "__aexit__")
|
||||
@@ -2051,19 +1921,6 @@ class ROS2DeviceNode:
|
||||
except Exception as e:
|
||||
self._ros_node.lab_logger().error(f"设备后初始化失败: {e}")
|
||||
|
||||
def _start_loop(self):
|
||||
def run_event_loop():
|
||||
loop = asyncio.new_event_loop()
|
||||
ROS2DeviceNode._asyncio_loop = loop
|
||||
asyncio.set_event_loop(loop)
|
||||
loop.run_forever()
|
||||
|
||||
ROS2DeviceNode._asyncio_loop_thread = threading.Thread(
|
||||
target=run_event_loop, daemon=True, name="ROS2DeviceNode"
|
||||
)
|
||||
ROS2DeviceNode._asyncio_loop_thread.start()
|
||||
logger.info(f"循环线程已启动")
|
||||
|
||||
|
||||
class DeviceInfoType(TypedDict):
|
||||
id: str
|
||||
|
||||
@@ -1,17 +1,16 @@
|
||||
import collections
|
||||
from dataclasses import dataclass, field
|
||||
import json
|
||||
import threading
|
||||
import time
|
||||
import traceback
|
||||
import uuid
|
||||
from dataclasses import dataclass, field
|
||||
from typing import TYPE_CHECKING, Optional, Dict, Any, List, ClassVar, Set, Union
|
||||
from typing import TYPE_CHECKING, Optional, Dict, Any, List, ClassVar, Set, TypedDict, Union
|
||||
|
||||
from action_msgs.msg import GoalStatus
|
||||
from geometry_msgs.msg import Point
|
||||
from rclpy.action import ActionClient, get_action_server_names_and_types_by_node
|
||||
from rclpy.service import Service
|
||||
from typing_extensions import TypedDict
|
||||
from unilabos_msgs.msg import Resource # type: ignore
|
||||
from unilabos_msgs.srv import (
|
||||
ResourceAdd,
|
||||
@@ -23,20 +22,10 @@ from unilabos_msgs.srv import (
|
||||
from unilabos_msgs.srv._serial_command import SerialCommand_Request, SerialCommand_Response
|
||||
from unique_identifier_msgs.msg import UUID
|
||||
|
||||
from unilabos.registry.placeholder_type import ResourceSlot, DeviceSlot
|
||||
from unilabos.registry.registry import lab_registry
|
||||
from unilabos.resources.container import RegularContainer
|
||||
from unilabos.resources.graphio import initialize_resource
|
||||
from unilabos.resources.registry import add_schema
|
||||
from unilabos.resources.resource_tracker import (
|
||||
ResourceDict,
|
||||
ResourceDictInstance,
|
||||
ResourceTreeSet,
|
||||
ResourceTreeInstance,
|
||||
RETURN_UNILABOS_SAMPLES,
|
||||
JSON_UNILABOS_PARAM,
|
||||
PARAM_SAMPLE_UUIDS,
|
||||
)
|
||||
from unilabos.ros.initialize_device import initialize_device_from_dict
|
||||
from unilabos.ros.msgs.message_converter import (
|
||||
get_msg_type,
|
||||
@@ -47,10 +36,17 @@ from unilabos.ros.msgs.message_converter import (
|
||||
)
|
||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, ROS2DeviceNode, DeviceNodeResourceTracker
|
||||
from unilabos.ros.nodes.presets.controller_node import ControllerNode
|
||||
from unilabos.resources.resource_tracker import (
|
||||
ResourceDict,
|
||||
ResourceDictInstance,
|
||||
ResourceTreeSet,
|
||||
ResourceTreeInstance,
|
||||
)
|
||||
from unilabos.utils import logger
|
||||
from unilabos.utils.exception import DeviceClassInvalid
|
||||
from unilabos.utils.log import warning
|
||||
from unilabos.utils.type_check import serialize_result_info
|
||||
from unilabos.registry.placeholder_type import ResourceSlot, DeviceSlot
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from unilabos.app.ws_client import QueueItem
|
||||
@@ -66,18 +62,6 @@ class TestResourceReturn(TypedDict):
|
||||
devices: List[DeviceSlot]
|
||||
|
||||
|
||||
class TestLatencyReturn(TypedDict):
|
||||
"""test_latency方法的返回值类型"""
|
||||
|
||||
avg_rtt_ms: float
|
||||
avg_time_diff_ms: float
|
||||
max_time_error_ms: float
|
||||
task_delay_ms: float
|
||||
raw_delay_ms: float
|
||||
test_count: int
|
||||
status: str
|
||||
|
||||
|
||||
class HostNode(BaseROS2DeviceNode):
|
||||
"""
|
||||
主机节点类,负责管理设备、资源和控制器
|
||||
@@ -751,14 +735,13 @@ class HostNode(BaseROS2DeviceNode):
|
||||
if bCreate:
|
||||
self.lab_logger().trace(f"Status created: {device_id}.{property_name} = {msg.data}")
|
||||
else:
|
||||
self.lab_logger().trace(f"Status updated: {device_id}.{property_name} = {msg.data}")
|
||||
self.lab_logger().debug(f"Status updated: {device_id}.{property_name} = {msg.data}")
|
||||
|
||||
def send_goal(
|
||||
self,
|
||||
item: "QueueItem",
|
||||
action_type: str,
|
||||
action_kwargs: Dict[str, Any],
|
||||
sample_material: Dict[str, str],
|
||||
server_info: Optional[Dict[str, Any]] = None,
|
||||
) -> None:
|
||||
"""
|
||||
@@ -776,14 +759,14 @@ class HostNode(BaseROS2DeviceNode):
|
||||
if action_name.startswith("auto-"):
|
||||
action_name = action_name[5:]
|
||||
action_id = f"/devices/{device_id}/_execute_driver_command"
|
||||
json_command: Dict[str, Any] = {
|
||||
"function_name": action_name,
|
||||
"function_args": action_kwargs,
|
||||
JSON_UNILABOS_PARAM: {
|
||||
PARAM_SAMPLE_UUIDS: sample_material,
|
||||
},
|
||||
action_kwargs = {
|
||||
"string": json.dumps(
|
||||
{
|
||||
"function_name": action_name,
|
||||
"function_args": action_kwargs,
|
||||
}
|
||||
)
|
||||
}
|
||||
action_kwargs = {"string": json.dumps(json_command)}
|
||||
if action_type.startswith("UniLabJsonCommandAsync"):
|
||||
action_id = f"/devices/{device_id}/_execute_driver_command_async"
|
||||
else:
|
||||
@@ -794,10 +777,24 @@ class HostNode(BaseROS2DeviceNode):
|
||||
raise ValueError(f"ActionClient {action_id} not found.")
|
||||
|
||||
action_client: ActionClient = self._action_clients[action_id]
|
||||
|
||||
# 遍历action_kwargs下的所有子dict,将"sample_uuid"的值赋给"sample_id"
|
||||
def assign_sample_id(obj):
|
||||
if isinstance(obj, dict):
|
||||
if "sample_uuid" in obj:
|
||||
obj["sample_id"] = obj["sample_uuid"]
|
||||
obj.pop("sample_uuid")
|
||||
for k, v in obj.items():
|
||||
if k != "unilabos_extra":
|
||||
assign_sample_id(v)
|
||||
elif isinstance(obj, list):
|
||||
for item in obj:
|
||||
assign_sample_id(item)
|
||||
|
||||
assign_sample_id(action_kwargs)
|
||||
goal_msg = convert_to_ros_msg(action_client._action_type.Goal(), action_kwargs)
|
||||
|
||||
# self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {str(goal_msg)[:1000]}")
|
||||
self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {action_kwargs}")
|
||||
self.lab_logger().info(f"[Host Node] Sending goal for {action_id}: {str(goal_msg)[:1000]}")
|
||||
self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {goal_msg}")
|
||||
action_client.wait_for_server()
|
||||
goal_uuid_obj = UUID(uuid=list(u.bytes))
|
||||
@@ -856,14 +853,9 @@ class HostNode(BaseROS2DeviceNode):
|
||||
# 适配后端的一些额外处理
|
||||
return_value = return_info.get("return_value")
|
||||
if isinstance(return_value, dict):
|
||||
unilabos_samples = return_value.pop(RETURN_UNILABOS_SAMPLES, None)
|
||||
if isinstance(unilabos_samples, list) and unilabos_samples:
|
||||
self.lab_logger().info(
|
||||
f"[Host Node] Job {job_id[:8]} returned {len(unilabos_samples)} sample(s): "
|
||||
f"{[s.get('name', s.get('id', 'unknown')) if isinstance(s, dict) else str(s)[:20] for s in unilabos_samples[:5]]}"
|
||||
f"{'...' if len(unilabos_samples) > 5 else ''}"
|
||||
)
|
||||
return_info["samples"] = unilabos_samples
|
||||
unilabos_samples = return_info.get("unilabos_samples")
|
||||
if isinstance(unilabos_samples, list):
|
||||
return_info["unilabos_samples"] = unilabos_samples
|
||||
suc = return_info.get("suc", False)
|
||||
if not suc:
|
||||
status = "failed"
|
||||
@@ -889,7 +881,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
# 清理 _goals 中的记录
|
||||
if job_id in self._goals:
|
||||
del self._goals[job_id]
|
||||
self.lab_logger().trace(f"[Host Node] Removed goal {job_id[:8]} from _goals")
|
||||
self.lab_logger().debug(f"[Host Node] Removed goal {job_id[:8]} from _goals")
|
||||
|
||||
# 存储结果供 HTTP API 查询
|
||||
try:
|
||||
@@ -1169,7 +1161,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
"""
|
||||
更新节点信息回调
|
||||
"""
|
||||
self.lab_logger().trace(f"[Host Node] Node info update request received: {request}")
|
||||
# self.lab_logger().info(f"[Host Node] Node info update request received: {request}")
|
||||
try:
|
||||
from unilabos.app.communication import get_communication_client
|
||||
from unilabos.app.web.client import HTTPClient, http_client
|
||||
@@ -1334,20 +1326,10 @@ class HostNode(BaseROS2DeviceNode):
|
||||
self.lab_logger().debug(f"[Host Node-Resource] List parameters: {request}")
|
||||
return response
|
||||
|
||||
def test_latency(self) -> TestLatencyReturn:
|
||||
def test_latency(self):
|
||||
"""
|
||||
测试网络延迟的action实现
|
||||
通过5次ping-pong机制校对时间误差并计算实际延迟
|
||||
|
||||
Returns:
|
||||
TestLatencyReturn: 包含延迟测试结果的字典,包括:
|
||||
- avg_rtt_ms: 平均往返时间(毫秒)
|
||||
- avg_time_diff_ms: 平均时间差(毫秒)
|
||||
- max_time_error_ms: 最大时间误差(毫秒)
|
||||
- task_delay_ms: 实际任务延迟(毫秒),-1表示无法计算
|
||||
- raw_delay_ms: 原始时间差(毫秒),-1表示无法计算
|
||||
- test_count: 有效测试次数
|
||||
- status: 测试状态,"success"表示成功,"all_timeout"表示全部超时
|
||||
"""
|
||||
import uuid as uuid_module
|
||||
|
||||
@@ -1410,15 +1392,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
|
||||
if not ping_results:
|
||||
self.lab_logger().error("❌ 所有ping-pong测试都失败了")
|
||||
return {
|
||||
"avg_rtt_ms": -1.0,
|
||||
"avg_time_diff_ms": -1.0,
|
||||
"max_time_error_ms": -1.0,
|
||||
"task_delay_ms": -1.0,
|
||||
"raw_delay_ms": -1.0,
|
||||
"test_count": 0,
|
||||
"status": "all_timeout",
|
||||
}
|
||||
return {"status": "all_timeout"}
|
||||
|
||||
# 统计分析
|
||||
rtts = [r["rtt_ms"] for r in ping_results]
|
||||
@@ -1426,7 +1400,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
|
||||
avg_rtt_ms = sum(rtts) / len(rtts)
|
||||
avg_time_diff_ms = sum(time_diffs) / len(time_diffs)
|
||||
max_time_diff_error_ms: float = max(abs(min(time_diffs)), abs(max(time_diffs)))
|
||||
max_time_diff_error_ms = max(abs(min(time_diffs)), abs(max(time_diffs)))
|
||||
|
||||
self.lab_logger().info("-" * 50)
|
||||
self.lab_logger().info("[测试统计]")
|
||||
@@ -1466,7 +1440,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
|
||||
self.lab_logger().info("=" * 60)
|
||||
|
||||
res: TestLatencyReturn = {
|
||||
return {
|
||||
"avg_rtt_ms": avg_rtt_ms,
|
||||
"avg_time_diff_ms": avg_time_diff_ms,
|
||||
"max_time_error_ms": max_time_diff_error_ms,
|
||||
@@ -1477,14 +1451,9 @@ class HostNode(BaseROS2DeviceNode):
|
||||
"test_count": len(ping_results),
|
||||
"status": "success",
|
||||
}
|
||||
return res
|
||||
|
||||
def test_resource(
|
||||
self,
|
||||
resource: ResourceSlot = None,
|
||||
resources: List[ResourceSlot] = None,
|
||||
device: DeviceSlot = None,
|
||||
devices: List[DeviceSlot] = None,
|
||||
self, resource: ResourceSlot = None, resources: List[ResourceSlot] = None, device: DeviceSlot = None, devices: List[DeviceSlot] = None
|
||||
) -> TestResourceReturn:
|
||||
if resources is None:
|
||||
resources = []
|
||||
@@ -1545,9 +1514,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
|
||||
# 构建服务地址
|
||||
srv_address = f"/srv{namespace}/s2c_resource_tree"
|
||||
self.lab_logger().trace(
|
||||
f"[Host Node-Resource] Host -> {device_id} ResourceTree {action} operation started -------"
|
||||
)
|
||||
self.lab_logger().trace(f"[Host Node-Resource] Host -> {device_id} ResourceTree {action} operation started -------")
|
||||
|
||||
# 创建服务客户端
|
||||
sclient = self.create_client(SerialCommand, srv_address)
|
||||
@@ -1582,9 +1549,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
time.sleep(0.05)
|
||||
|
||||
response = future.result()
|
||||
self.lab_logger().trace(
|
||||
f"[Host Node-Resource] Host -> {device_id} ResourceTree {action} operation completed -------"
|
||||
)
|
||||
self.lab_logger().trace(f"[Host Node-Resource] Host -> {device_id} ResourceTree {action} operation completed -------")
|
||||
return True
|
||||
|
||||
except Exception as e:
|
||||
|
||||
@@ -6,6 +6,8 @@ from typing import List, Dict, Any, Optional, TYPE_CHECKING
|
||||
|
||||
import rclpy
|
||||
from rosidl_runtime_py import message_to_ordereddict
|
||||
from unilabos_msgs.msg import Resource
|
||||
from unilabos_msgs.srv import ResourceUpdate
|
||||
|
||||
from unilabos.messages import * # type: ignore # protocol names
|
||||
from rclpy.action import ActionServer, ActionClient
|
||||
@@ -13,6 +15,7 @@ from rclpy.action.server import ServerGoalHandle
|
||||
from unilabos_msgs.srv._serial_command import SerialCommand_Request, SerialCommand_Response
|
||||
|
||||
from unilabos.compile import action_protocol_generators
|
||||
from unilabos.resources.graphio import nested_dict_to_list
|
||||
from unilabos.ros.initialize_device import initialize_device_from_dict
|
||||
from unilabos.ros.msgs.message_converter import (
|
||||
get_action_type,
|
||||
@@ -228,15 +231,15 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
|
||||
try:
|
||||
# 统一处理单个或多个资源
|
||||
resource_id = (
|
||||
protocol_kwargs[k]["id"]
|
||||
if v == "unilabos_msgs/Resource"
|
||||
else protocol_kwargs[k][0]["id"]
|
||||
protocol_kwargs[k]["id"] if v == "unilabos_msgs/Resource" else protocol_kwargs[k][0]["id"]
|
||||
)
|
||||
resource_uuid = protocol_kwargs[k].get("uuid", None)
|
||||
r = SerialCommand_Request()
|
||||
r.command = json.dumps({"id": resource_id, "uuid": resource_uuid, "with_children": True})
|
||||
# 发送请求并等待响应
|
||||
response: SerialCommand_Response = await self._resource_clients["resource_get"].call_async(
|
||||
response: SerialCommand_Response = await self._resource_clients[
|
||||
"resource_get"
|
||||
].call_async(
|
||||
r
|
||||
) # type: ignore
|
||||
raw_data = json.loads(response.response)
|
||||
@@ -304,54 +307,12 @@ class ROS2WorkstationNode(BaseROS2DeviceNode):
|
||||
|
||||
# 向Host更新物料当前状态
|
||||
for k, v in goal.get_fields_and_field_types().items():
|
||||
if v not in ["unilabos_msgs/Resource", "sequence<unilabos_msgs/Resource>"]:
|
||||
continue
|
||||
self.lab_logger().info(f"更新资源状态: {k}")
|
||||
try:
|
||||
# 去重:使用 seen 集合获取唯一的资源对象
|
||||
seen = set()
|
||||
unique_resources = []
|
||||
|
||||
# 获取资源数据,统一转换为列表
|
||||
resource_data = protocol_kwargs[k]
|
||||
is_sequence = v != "unilabos_msgs/Resource"
|
||||
if not is_sequence:
|
||||
resource_list = [resource_data] if isinstance(resource_data, dict) else resource_data
|
||||
else:
|
||||
# 处理序列类型,可能是嵌套列表
|
||||
resource_list = []
|
||||
if isinstance(resource_data, list):
|
||||
for item in resource_data:
|
||||
if isinstance(item, list):
|
||||
resource_list.extend(item)
|
||||
else:
|
||||
resource_list.append(item)
|
||||
else:
|
||||
resource_list = [resource_data]
|
||||
|
||||
for res_data in resource_list:
|
||||
if not isinstance(res_data, dict):
|
||||
continue
|
||||
res_name = res_data.get("id") or res_data.get("name")
|
||||
if not res_name:
|
||||
continue
|
||||
|
||||
# 使用 resource_tracker 获取本地 PLR 实例
|
||||
plr = self.resource_tracker.figure_resource({"name": res_name}, try_mode=False)
|
||||
# 获取父资源
|
||||
res = self.resource_tracker.parent_resource(plr)
|
||||
if res is None:
|
||||
res = plr
|
||||
if id(res) not in seen:
|
||||
seen.add(id(res))
|
||||
unique_resources.append(res)
|
||||
|
||||
# 使用新的资源树接口更新
|
||||
if unique_resources:
|
||||
await self.update_resource(unique_resources)
|
||||
except Exception as e:
|
||||
self.lab_logger().error(f"资源更新失败: {e}")
|
||||
self.lab_logger().error(traceback.format_exc())
|
||||
if v in ["unilabos_msgs/Resource", "sequence<unilabos_msgs/Resource>"]:
|
||||
r = ResourceUpdate.Request()
|
||||
r.resources = [
|
||||
convert_to_ros_msg(Resource, rs) for rs in nested_dict_to_list(protocol_kwargs[k])
|
||||
]
|
||||
response = await self._resource_clients["resource_update"].call_async(r)
|
||||
|
||||
# 设置成功状态和返回值
|
||||
execution_success = True
|
||||
|
||||
@@ -52,8 +52,7 @@ class DeviceClassCreator(Generic[T]):
|
||||
if self.device_instance is not None:
|
||||
for c in self.children:
|
||||
if c.res_content.type != "device":
|
||||
res = ResourceTreeSet([ResourceTreeInstance(c)]).to_plr_resources()[0]
|
||||
self.resource_tracker.add_resource(res)
|
||||
self.resource_tracker.add_resource(c.get_plr_nested_dict())
|
||||
|
||||
def create_instance(self, data: Dict[str, Any]) -> T:
|
||||
"""
|
||||
@@ -120,7 +119,7 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
|
||||
# return resource, source_type
|
||||
|
||||
def _process_resource_references(
|
||||
self, data: Any, processed_child_names: Optional[Dict[str, Any]], to_dict=False, states=None, prefix_path="", name_to_uuid=None
|
||||
self, data: Any, to_dict=False, states=None, prefix_path="", name_to_uuid=None
|
||||
) -> Any:
|
||||
"""
|
||||
递归处理资源引用,替换_resource_child_name对应的资源
|
||||
@@ -165,7 +164,6 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
|
||||
states[prefix_path] = resource_instance.serialize_all_state()
|
||||
return serialized
|
||||
else:
|
||||
processed_child_names[child_name] = resource_instance
|
||||
self.resource_tracker.add_resource(resource_instance)
|
||||
# 立即设置UUID,state已经在resource_ulab_to_plr中处理过了
|
||||
if name_to_uuid:
|
||||
@@ -184,12 +182,12 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
|
||||
result = {}
|
||||
for key, value in data.items():
|
||||
new_prefix = f"{prefix_path}.{key}" if prefix_path else key
|
||||
result[key] = self._process_resource_references(value, processed_child_names, to_dict, states, new_prefix, name_to_uuid)
|
||||
result[key] = self._process_resource_references(value, to_dict, states, new_prefix, name_to_uuid)
|
||||
return result
|
||||
|
||||
elif isinstance(data, list):
|
||||
return [
|
||||
self._process_resource_references(item, processed_child_names, to_dict, states, f"{prefix_path}[{i}]", name_to_uuid)
|
||||
self._process_resource_references(item, to_dict, states, f"{prefix_path}[{i}]", name_to_uuid)
|
||||
for i, item in enumerate(data)
|
||||
]
|
||||
|
||||
@@ -236,7 +234,7 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
|
||||
# 首先处理资源引用
|
||||
states = {}
|
||||
processed_data = self._process_resource_references(
|
||||
data, {}, to_dict=True, states=states, name_to_uuid=name_to_uuid
|
||||
data, to_dict=True, states=states, name_to_uuid=name_to_uuid
|
||||
)
|
||||
|
||||
try:
|
||||
@@ -272,12 +270,7 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
|
||||
arg_value = spec_args[param_name].annotation
|
||||
data[param_name]["_resource_type"] = self.device_cls.__module__ + ":" + arg_value
|
||||
logger.debug(f"自动补充 _resource_type: {data[param_name]['_resource_type']}")
|
||||
processed_child_names = {}
|
||||
processed_data = self._process_resource_references(data, processed_child_names, to_dict=False, name_to_uuid=name_to_uuid)
|
||||
for child_name, resource_instance in processed_data.items():
|
||||
for ind, name in enumerate([child.res_content.name for child in self.children]):
|
||||
if name == child_name:
|
||||
self.children.pop(ind)
|
||||
processed_data = self._process_resource_references(data, to_dict=False, name_to_uuid=name_to_uuid)
|
||||
self.device_instance = super(PyLabRobotCreator, self).create_instance(processed_data) # 补全变量后直接调用,调用的自身的attach_resource
|
||||
except Exception as e:
|
||||
logger.error(f"PyLabRobot创建实例失败: {e}")
|
||||
@@ -349,10 +342,9 @@ class WorkstationNodeCreator(DeviceClassCreator[T]):
|
||||
try:
|
||||
# 创建实例,额外补充一个给protocol node的字段,后面考虑取消
|
||||
data["children"] = self.children
|
||||
# super(WorkstationNodeCreator, self).create_instance(data)的时候会attach
|
||||
# for child in self.children:
|
||||
# if child.res_content.type != "device":
|
||||
# self.resource_tracker.add_resource(child.get_plr_nested_dict())
|
||||
for child in self.children:
|
||||
if child.res_content.type != "device":
|
||||
self.resource_tracker.add_resource(child.get_plr_nested_dict())
|
||||
deck_dict = data.get("deck")
|
||||
if deck_dict:
|
||||
from pylabrobot.resources import Deck, Resource
|
||||
|
||||
@@ -339,8 +339,13 @@
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"max_volume": 500.0,
|
||||
"type": "RegularContainer",
|
||||
"category": "container"
|
||||
"category": "container",
|
||||
"max_temp": 200.0,
|
||||
"min_temp": -20.0,
|
||||
"has_stirrer": true,
|
||||
"has_heater": true
|
||||
},
|
||||
"data": {
|
||||
"liquids": [],
|
||||
@@ -764,7 +769,9 @@
|
||||
"size_y": 250,
|
||||
"size_z": 0,
|
||||
"type": "RegularContainer",
|
||||
"category": "container"
|
||||
"category": "container",
|
||||
"reagent": "sodium_chloride",
|
||||
"physical_state": "solid"
|
||||
},
|
||||
"data": {
|
||||
"current_mass": 500.0,
|
||||
@@ -785,11 +792,14 @@
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"volume": 500.0,
|
||||
"size_x": 600,
|
||||
"size_y": 250,
|
||||
"size_z": 0,
|
||||
"type": "RegularContainer",
|
||||
"category": "container"
|
||||
"category": "container",
|
||||
"reagent": "sodium_carbonate",
|
||||
"physical_state": "solid"
|
||||
},
|
||||
"data": {
|
||||
"current_mass": 500.0,
|
||||
@@ -810,11 +820,14 @@
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"volume": 500.0,
|
||||
"size_x": 650,
|
||||
"size_y": 250,
|
||||
"size_z": 0,
|
||||
"type": "RegularContainer",
|
||||
"category": "container"
|
||||
"category": "container",
|
||||
"reagent": "magnesium_chloride",
|
||||
"physical_state": "solid"
|
||||
},
|
||||
"data": {
|
||||
"current_mass": 500.0,
|
||||
|
||||
@@ -1,837 +0,0 @@
|
||||
{
|
||||
"nodes": [
|
||||
{
|
||||
"id": "PRCXI",
|
||||
"name": "PRCXI",
|
||||
"type": "device",
|
||||
"class": "liquid_handler.prcxi",
|
||||
"parent": "",
|
||||
"pose": {
|
||||
"size": {
|
||||
"width": 550,
|
||||
"height": 400,
|
||||
"depth": 0
|
||||
}
|
||||
},
|
||||
"config": {
|
||||
"axis": "Left",
|
||||
"deck": {
|
||||
"_resource_type": "unilabos.devices.liquid_handling.prcxi.prcxi:PRCXI9300Deck",
|
||||
"_resource_child_name": "PRCXI_Deck"
|
||||
},
|
||||
"host": "10.20.30.184",
|
||||
"port": 9999,
|
||||
"debug": false,
|
||||
"setup": true,
|
||||
"is_9320": true,
|
||||
"timeout": 10,
|
||||
"matrix_id": "5de524d0-3f95-406c-86dd-f83626ebc7cb",
|
||||
"simulator": false,
|
||||
"step_mode": false,
|
||||
"channel_num": 2
|
||||
},
|
||||
"data": {
|
||||
"reset_ok": true
|
||||
},
|
||||
"schema": {},
|
||||
"description": "",
|
||||
"model": null,
|
||||
"position": {
|
||||
"x": 0,
|
||||
"y": 700,
|
||||
"z": 0
|
||||
}
|
||||
},
|
||||
{
|
||||
"id": "PRCXI_Deck",
|
||||
"name": "PRCXI_Deck",
|
||||
|
||||
"children": [],
|
||||
"parent": "PRCXI",
|
||||
"type": "deck",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300Deck",
|
||||
"size_x": 550,
|
||||
"size_y": 400,
|
||||
"size_z": 17,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "deck",
|
||||
"barcode": null
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T1",
|
||||
"name": "T1",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 5,
|
||||
"y": 301,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T1",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T2",
|
||||
"name": "T2",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 142.5,
|
||||
"y": 301,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T2",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T3",
|
||||
"name": "T3",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 280,
|
||||
"y": 301,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T3",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
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"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T11",
|
||||
"name": "T11",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 276,
|
||||
"y": 96,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300Container",
|
||||
"size_x": 127,
|
||||
"size_y": 85.5,
|
||||
"size_z": 10,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
"ordering": {},
|
||||
"sites": [
|
||||
{
|
||||
"label": "T11",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T12",
|
||||
"name": "T12",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 414,
|
||||
"y": 96,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300Container",
|
||||
"size_x": 127,
|
||||
"size_y": 85.5,
|
||||
"size_z": 10,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
"ordering": {},
|
||||
"sites": [
|
||||
{
|
||||
"label": "T12",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T13",
|
||||
"name": "T13",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300Container",
|
||||
"size_x": 127,
|
||||
"size_y": 85.5,
|
||||
"size_z": 10,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
"ordering": {},
|
||||
"sites": [
|
||||
{
|
||||
"label": "T13",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T14",
|
||||
"name": "T14",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 138,
|
||||
"y": 0,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300Container",
|
||||
"size_x": 127,
|
||||
"size_y": 85.5,
|
||||
"size_z": 10,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
"ordering": {},
|
||||
"sites": [
|
||||
{
|
||||
"label": "T14",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T15",
|
||||
"name": "T15",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 276,
|
||||
"y": 0,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300Container",
|
||||
"size_x": 127,
|
||||
"size_y": 85.5,
|
||||
"size_z": 10,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
"ordering": {},
|
||||
"sites": [
|
||||
{
|
||||
"label": "T15",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T16",
|
||||
"name": "T16",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 414,
|
||||
"y": 0,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300Container",
|
||||
"size_x": 127,
|
||||
"size_y": 85.5,
|
||||
"size_z": 10,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
"ordering": {},
|
||||
"sites": [
|
||||
{
|
||||
"label": "T16",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
}
|
||||
],
|
||||
"edges": []
|
||||
}
|
||||
File diff suppressed because it is too large
Load Diff
@@ -14,7 +14,11 @@
|
||||
],
|
||||
"type": "device",
|
||||
"class": "reaction_station.bioyond",
|
||||
"position": {"x": 0, "y": 3800, "z": 0},
|
||||
"position": {
|
||||
"x": 0,
|
||||
"y": 1100,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"config": {
|
||||
"api_key": "DE9BDDA0",
|
||||
@@ -57,6 +61,10 @@
|
||||
"BIOYOND_PolymerStation_TipBox": [
|
||||
"枪头盒",
|
||||
"3a143890-9d51-60ac-6d6f-6edb43c12041"
|
||||
],
|
||||
"BIOYOND_PolymerStation_Measurement_Vial": [
|
||||
"测量小瓶",
|
||||
"b1fc79c9-5864-4f05-8052-6ed3abc18a97"
|
||||
]
|
||||
}
|
||||
},
|
||||
@@ -66,6 +74,9 @@
|
||||
"_resource_type": "unilabos.resources.bioyond.decks:BIOYOND_PolymerReactionStation_Deck"
|
||||
}
|
||||
},
|
||||
"size_x": 2700.0,
|
||||
"size_y": 1080.0,
|
||||
"size_z": 2000.0,
|
||||
"protocol_type": []
|
||||
},
|
||||
"data": {}
|
||||
@@ -77,7 +88,11 @@
|
||||
"parent": "reaction_station_bioyond",
|
||||
"type": "device",
|
||||
"class": "reaction_station.reactor",
|
||||
"position": {"x": 1150, "y": 380, "z": 0},
|
||||
"position": {
|
||||
"x": 1150,
|
||||
"y": 380,
|
||||
"z": 0
|
||||
},
|
||||
"config": {},
|
||||
"data": {}
|
||||
},
|
||||
@@ -88,7 +103,11 @@
|
||||
"parent": "reaction_station_bioyond",
|
||||
"type": "device",
|
||||
"class": "reaction_station.reactor",
|
||||
"position": {"x": 1365, "y": 380, "z": 0},
|
||||
"position": {
|
||||
"x": 1365,
|
||||
"y": 380,
|
||||
"z": 0
|
||||
},
|
||||
"config": {},
|
||||
"data": {}
|
||||
},
|
||||
@@ -99,7 +118,11 @@
|
||||
"parent": "reaction_station_bioyond",
|
||||
"type": "device",
|
||||
"class": "reaction_station.reactor",
|
||||
"position": {"x": 1580, "y": 380, "z": 0},
|
||||
"position": {
|
||||
"x": 1580,
|
||||
"y": 380,
|
||||
"z": 0
|
||||
},
|
||||
"config": {},
|
||||
"data": {}
|
||||
},
|
||||
@@ -110,7 +133,11 @@
|
||||
"parent": "reaction_station_bioyond",
|
||||
"type": "device",
|
||||
"class": "reaction_station.reactor",
|
||||
"position": {"x": 1790, "y": 380, "z": 0},
|
||||
"position": {
|
||||
"x": 1790,
|
||||
"y": 380,
|
||||
"z": 0
|
||||
},
|
||||
"config": {},
|
||||
"data": {}
|
||||
},
|
||||
@@ -121,7 +148,11 @@
|
||||
"parent": "reaction_station_bioyond",
|
||||
"type": "device",
|
||||
"class": "reaction_station.reactor",
|
||||
"position": {"x": 2010, "y": 380, "z": 0},
|
||||
"position": {
|
||||
"x": 2010,
|
||||
"y": 380,
|
||||
"z": 0
|
||||
},
|
||||
"config": {},
|
||||
"data": {}
|
||||
},
|
||||
@@ -134,7 +165,7 @@
|
||||
"class": "BIOYOND_PolymerReactionStation_Deck",
|
||||
"position": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"y": 1100,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
|
||||
@@ -24,7 +24,6 @@ class EnvironmentChecker:
|
||||
"msgcenterpy": "msgcenterpy",
|
||||
"opentrons_shared_data": "opentrons_shared_data",
|
||||
"typing_extensions": "typing_extensions",
|
||||
"crcmod": "crcmod-plus",
|
||||
}
|
||||
|
||||
# 特殊安装包(需要特殊处理的包)
|
||||
|
||||
@@ -27,7 +27,6 @@ __all__ = [
|
||||
|
||||
from ast import Constant
|
||||
|
||||
from unilabos.resources.resource_tracker import PARAM_SAMPLE_UUIDS
|
||||
from unilabos.utils import logger
|
||||
|
||||
|
||||
@@ -335,18 +334,13 @@ class ImportManager:
|
||||
result["action_methods"][method_name] = method_info
|
||||
return result
|
||||
|
||||
def _analyze_method_signature(self, method, skip_unilabos_params: bool = True) -> Dict[str, Any]:
|
||||
def _analyze_method_signature(self, method) -> Dict[str, Any]:
|
||||
"""
|
||||
分析方法签名,提取具体的命名参数信息
|
||||
|
||||
注意:此方法会跳过*args和**kwargs,只提取具体的命名参数
|
||||
这样可以确保通过**dict方式传参时的准确性
|
||||
|
||||
Args:
|
||||
method: 要分析的方法
|
||||
skip_unilabos_params: 是否跳过 unilabos 系统参数(如 sample_uuids),
|
||||
registry 补全时为 True,JsonCommand 执行时为 False
|
||||
|
||||
示例用法:
|
||||
method_info = self._analyze_method_signature(some_method)
|
||||
params = {"param1": "value1", "param2": "value2"}
|
||||
@@ -367,10 +361,6 @@ class ImportManager:
|
||||
if param.kind == param.VAR_KEYWORD: # **kwargs
|
||||
continue
|
||||
|
||||
# 跳过 sample_uuids 参数(由系统自动注入,registry 补全时跳过)
|
||||
if skip_unilabos_params and param_name == PARAM_SAMPLE_UUIDS:
|
||||
continue
|
||||
|
||||
is_required = param.default == inspect.Parameter.empty
|
||||
if is_required:
|
||||
num_required += 1
|
||||
@@ -559,9 +549,6 @@ class ImportManager:
|
||||
for i, arg in enumerate(node.args.args):
|
||||
if arg.arg == "self":
|
||||
continue
|
||||
# 跳过 sample_uuids 参数(由系统自动注入)
|
||||
if arg.arg == PARAM_SAMPLE_UUIDS:
|
||||
continue
|
||||
arg_info = {
|
||||
"name": arg.arg,
|
||||
"type": None,
|
||||
|
||||
@@ -1,18 +0,0 @@
|
||||
networkx
|
||||
typing_extensions
|
||||
websockets
|
||||
msgcenterpy>=0.1.5
|
||||
opentrons_shared_data
|
||||
pint
|
||||
fastapi
|
||||
jinja2
|
||||
requests
|
||||
uvicorn
|
||||
pyautogui
|
||||
opcua
|
||||
pyserial
|
||||
pandas
|
||||
crcmod-plus
|
||||
pymodbus
|
||||
matplotlib
|
||||
pylibftdi
|
||||
@@ -1,104 +1,3 @@
|
||||
"""
|
||||
工作流转换模块 - JSON 到 WorkflowGraph 的转换流程
|
||||
|
||||
==================== 输入格式 (JSON) ====================
|
||||
|
||||
{
|
||||
"workflow": [
|
||||
{"action": "transfer_liquid", "action_args": {"sources": "cell_lines", "targets": "Liquid_1", "asp_vol": 100.0, "dis_vol": 74.75, ...}},
|
||||
...
|
||||
],
|
||||
"reagent": {
|
||||
"cell_lines": {"slot": 4, "well": ["A1", "A3", "A5"], "labware": "DRUG + YOYO-MEDIA"},
|
||||
"Liquid_1": {"slot": 1, "well": ["A4", "A7", "A10"], "labware": "rep 1"},
|
||||
...
|
||||
}
|
||||
}
|
||||
|
||||
==================== 转换步骤 ====================
|
||||
|
||||
第一步: 按 slot 去重创建 create_resource 节点(创建板子)
|
||||
--------------------------------------------------------------------------------
|
||||
- 首先创建一个 Group 节点(type="Group", minimized=true),用于包含所有 create_resource 节点
|
||||
- 遍历所有 reagent,按 slot 去重,为每个唯一的 slot 创建一个板子
|
||||
- 所有 create_resource 节点的 parent_uuid 指向 Group 节点,minimized=true
|
||||
- 生成参数:
|
||||
res_id: plate_slot_{slot}
|
||||
device_id: /PRCXI
|
||||
class_name: PRCXI_BioER_96_wellplate
|
||||
parent: /PRCXI/PRCXI_Deck/T{slot}
|
||||
slot_on_deck: "{slot}"
|
||||
- 输出端口: labware(用于连接 set_liquid_from_plate)
|
||||
- 控制流: create_resource 之间通过 ready 端口串联
|
||||
|
||||
示例: slot=1, slot=4 -> 创建 1 个 Group + 2 个 create_resource 节点
|
||||
|
||||
第二步: 为每个 reagent 创建 set_liquid_from_plate 节点(设置液体)
|
||||
--------------------------------------------------------------------------------
|
||||
- 首先创建一个 Group 节点(type="Group", minimized=true),用于包含所有 set_liquid_from_plate 节点
|
||||
- 遍历所有 reagent,为每个试剂创建 set_liquid_from_plate 节点
|
||||
- 所有 set_liquid_from_plate 节点的 parent_uuid 指向 Group 节点,minimized=true
|
||||
- 生成参数:
|
||||
plate: [](通过连接传递,来自 create_resource 的 labware)
|
||||
well_names: ["A1", "A3", "A5"](来自 reagent 的 well 数组)
|
||||
liquid_names: ["cell_lines", "cell_lines", "cell_lines"](与 well 数量一致)
|
||||
volumes: [1e5, 1e5, 1e5](与 well 数量一致,默认体积)
|
||||
- 输入连接: create_resource (labware) -> set_liquid_from_plate (input_plate)
|
||||
- 输出端口: output_wells(用于连接 transfer_liquid)
|
||||
- 控制流: set_liquid_from_plate 连接在所有 create_resource 之后,通过 ready 端口串联
|
||||
|
||||
第三步: 解析 workflow,创建 transfer_liquid 等动作节点
|
||||
--------------------------------------------------------------------------------
|
||||
- 遍历 workflow 数组,为每个动作创建步骤节点
|
||||
- 参数重命名: asp_vol -> asp_vols, dis_vol -> dis_vols, asp_flow_rate -> asp_flow_rates, dis_flow_rate -> dis_flow_rates
|
||||
- 参数扩展: 根据 targets 的 wells 数量,将单值扩展为数组
|
||||
例: asp_vol=100.0, targets 有 3 个 wells -> asp_vols=[100.0, 100.0, 100.0]
|
||||
- 连接处理: 如果 sources/targets 已通过 set_liquid_from_plate 连接,参数值改为 []
|
||||
- 输入连接: set_liquid_from_plate (output_wells) -> transfer_liquid (sources_identifier / targets_identifier)
|
||||
- 输出端口: sources_out, targets_out(用于连接下一个 transfer_liquid)
|
||||
|
||||
==================== 连接关系图 ====================
|
||||
|
||||
控制流 (ready 端口串联):
|
||||
- create_resource 之间: 无 ready 连接
|
||||
- set_liquid_from_plate 之间: 无 ready 连接
|
||||
- create_resource 与 set_liquid_from_plate 之间: 无 ready 连接
|
||||
- transfer_liquid 之间: 通过 ready 端口串联
|
||||
transfer_liquid_1 -> transfer_liquid_2 -> transfer_liquid_3 -> ...
|
||||
|
||||
物料流:
|
||||
[create_resource] --labware--> [set_liquid_from_plate] --output_wells--> [transfer_liquid] --sources_out/targets_out--> [下一个 transfer_liquid]
|
||||
(slot=1) (cell_lines) (input_plate) (sources_identifier) (sources_identifier)
|
||||
(slot=4) (Liquid_1) (targets_identifier) (targets_identifier)
|
||||
|
||||
==================== 端口映射 ====================
|
||||
|
||||
create_resource:
|
||||
输出: labware
|
||||
|
||||
set_liquid_from_plate:
|
||||
输入: input_plate
|
||||
输出: output_plate, output_wells
|
||||
|
||||
transfer_liquid:
|
||||
输入: sources -> sources_identifier, targets -> targets_identifier
|
||||
输出: sources -> sources_out, targets -> targets_out
|
||||
|
||||
==================== 设备名配置 (device_name) ====================
|
||||
|
||||
每个节点都有 device_name 字段,指定在哪个设备上执行:
|
||||
- create_resource: device_name = "host_node"(固定)
|
||||
- set_liquid_from_plate: device_name = "PRCXI"(可配置,见 DEVICE_NAME_DEFAULT)
|
||||
- transfer_liquid 等动作: device_name = "PRCXI"(可配置,见 DEVICE_NAME_DEFAULT)
|
||||
|
||||
==================== 校验规则 ====================
|
||||
|
||||
- 检查 sources/targets 是否在 reagent 中定义
|
||||
- 检查 sources 和 targets 的 wells 数量是否匹配
|
||||
- 检查参数数组长度是否与 wells 数量一致
|
||||
- 如有问题,在 footer 中添加 [WARN: ...] 标记
|
||||
"""
|
||||
|
||||
import re
|
||||
import uuid
|
||||
|
||||
@@ -109,35 +8,6 @@ from typing import Dict, List, Any, Tuple, Optional
|
||||
|
||||
Json = Dict[str, Any]
|
||||
|
||||
|
||||
# ==================== 默认配置 ====================
|
||||
|
||||
# 设备名配置
|
||||
DEVICE_NAME_HOST = "host_node" # create_resource 固定在 host_node 上执行
|
||||
DEVICE_NAME_DEFAULT = "PRCXI" # transfer_liquid, set_liquid_from_plate 等动作的默认设备名
|
||||
|
||||
# 节点类型
|
||||
NODE_TYPE_DEFAULT = "ILab" # 所有节点的默认类型
|
||||
|
||||
# create_resource 节点默认参数
|
||||
CREATE_RESOURCE_DEFAULTS = {
|
||||
"device_id": "/PRCXI",
|
||||
"parent_template": "/PRCXI/PRCXI_Deck/T{slot}", # {slot} 会被替换为实际的 slot 值
|
||||
"class_name": "PRCXI_BioER_96_wellplate",
|
||||
}
|
||||
|
||||
# 默认液体体积 (uL)
|
||||
DEFAULT_LIQUID_VOLUME = 1e5
|
||||
|
||||
# 参数重命名映射:单数 -> 复数(用于 transfer_liquid 等动作)
|
||||
PARAM_RENAME_MAPPING = {
|
||||
"asp_vol": "asp_vols",
|
||||
"dis_vol": "dis_vols",
|
||||
"asp_flow_rate": "asp_flow_rates",
|
||||
"dis_flow_rate": "dis_flow_rates",
|
||||
}
|
||||
|
||||
|
||||
# ---------------- Graph ----------------
|
||||
|
||||
|
||||
@@ -358,7 +228,7 @@ def refactor_data(
|
||||
|
||||
|
||||
def build_protocol_graph(
|
||||
labware_info: Dict[str, Dict[str, Any]],
|
||||
labware_info: List[Dict[str, Any]],
|
||||
protocol_steps: List[Dict[str, Any]],
|
||||
workstation_name: str,
|
||||
action_resource_mapping: Optional[Dict[str, str]] = None,
|
||||
@@ -366,260 +236,112 @@ def build_protocol_graph(
|
||||
"""统一的协议图构建函数,根据设备类型自动选择构建逻辑
|
||||
|
||||
Args:
|
||||
labware_info: labware 信息字典,格式为 {name: {slot, well, labware, ...}, ...}
|
||||
labware_info: labware 信息字典
|
||||
protocol_steps: 协议步骤列表
|
||||
workstation_name: 工作站名称
|
||||
action_resource_mapping: action 到 resource_name 的映射字典,可选
|
||||
"""
|
||||
G = WorkflowGraph()
|
||||
resource_last_writer = {} # reagent_name -> "node_id:port"
|
||||
slot_to_create_resource = {} # slot -> create_resource node_id
|
||||
resource_last_writer = {}
|
||||
|
||||
protocol_steps = refactor_data(protocol_steps, action_resource_mapping)
|
||||
# 有机化学&移液站协议图构建
|
||||
WORKSTATION_ID = workstation_name
|
||||
|
||||
# ==================== 第一步:按 slot 去重创建 create_resource 节点 ====================
|
||||
# 收集所有唯一的 slot
|
||||
slots_info = {} # slot -> {labware, res_id}
|
||||
for labware_id, item in labware_info.items():
|
||||
slot = str(item.get("slot", ""))
|
||||
if slot and slot not in slots_info:
|
||||
res_id = f"plate_slot_{slot}"
|
||||
slots_info[slot] = {
|
||||
"labware": item.get("labware", ""),
|
||||
"res_id": res_id,
|
||||
}
|
||||
|
||||
# 创建 Group 节点,包含所有 create_resource 节点
|
||||
group_node_id = str(uuid.uuid4())
|
||||
G.add_node(
|
||||
group_node_id,
|
||||
name="Resources Group",
|
||||
type="Group",
|
||||
parent_uuid="",
|
||||
lab_node_type="Device",
|
||||
template_name="",
|
||||
resource_name="",
|
||||
footer="",
|
||||
minimized=True,
|
||||
param=None,
|
||||
)
|
||||
|
||||
# 为每个唯一的 slot 创建 create_resource 节点
|
||||
# 为所有labware创建资源节点
|
||||
res_index = 0
|
||||
for slot, info in slots_info.items():
|
||||
for labware_id, item in labware_info.items():
|
||||
# item_id = item.get("id") or item.get("name", f"item_{uuid.uuid4()}")
|
||||
node_id = str(uuid.uuid4())
|
||||
res_id = info["res_id"]
|
||||
|
||||
# 判断节点类型
|
||||
if "Rack" in str(labware_id) or "Tip" in str(labware_id):
|
||||
lab_node_type = "Labware"
|
||||
description = f"Prepare Labware: {labware_id}"
|
||||
liquid_type = []
|
||||
liquid_volume = []
|
||||
elif item.get("type") == "hardware" or "reactor" in str(labware_id).lower():
|
||||
if "reactor" not in str(labware_id).lower():
|
||||
continue
|
||||
lab_node_type = "Sample"
|
||||
description = f"Prepare Reactor: {labware_id}"
|
||||
liquid_type = []
|
||||
liquid_volume = []
|
||||
else:
|
||||
lab_node_type = "Reagent"
|
||||
description = f"Add Reagent to Flask: {labware_id}"
|
||||
liquid_type = [labware_id]
|
||||
liquid_volume = [1e5]
|
||||
|
||||
res_index += 1
|
||||
G.add_node(
|
||||
node_id,
|
||||
template_name="create_resource",
|
||||
resource_name="host_node",
|
||||
name=f"Plate {res_index}",
|
||||
description=f"Create plate on slot {slot}",
|
||||
lab_node_type="Labware",
|
||||
name=f"Res {res_index}",
|
||||
description=description,
|
||||
lab_node_type=lab_node_type,
|
||||
footer="create_resource-host_node",
|
||||
device_name=DEVICE_NAME_HOST,
|
||||
type=NODE_TYPE_DEFAULT,
|
||||
parent_uuid=group_node_id, # 指向 Group 节点
|
||||
minimized=True, # 折叠显示
|
||||
param={
|
||||
"res_id": res_id,
|
||||
"device_id": CREATE_RESOURCE_DEFAULTS["device_id"],
|
||||
"class_name": CREATE_RESOURCE_DEFAULTS["class_name"],
|
||||
"parent": CREATE_RESOURCE_DEFAULTS["parent_template"].format(slot=slot),
|
||||
"res_id": labware_id,
|
||||
"device_id": WORKSTATION_ID,
|
||||
"class_name": "container",
|
||||
"parent": WORKSTATION_ID,
|
||||
"bind_locations": {"x": 0.0, "y": 0.0, "z": 0.0},
|
||||
"slot_on_deck": slot,
|
||||
"liquid_input_slot": [-1],
|
||||
"liquid_type": liquid_type,
|
||||
"liquid_volume": liquid_volume,
|
||||
"slot_on_deck": "",
|
||||
},
|
||||
)
|
||||
slot_to_create_resource[slot] = node_id
|
||||
resource_last_writer[labware_id] = f"{node_id}:labware"
|
||||
|
||||
# create_resource 之间不需要 ready 连接
|
||||
|
||||
# ==================== 第二步:为每个 reagent 创建 set_liquid_from_plate 节点 ====================
|
||||
# 创建 Group 节点,包含所有 set_liquid_from_plate 节点
|
||||
set_liquid_group_id = str(uuid.uuid4())
|
||||
G.add_node(
|
||||
set_liquid_group_id,
|
||||
name="SetLiquid Group",
|
||||
type="Group",
|
||||
parent_uuid="",
|
||||
lab_node_type="Device",
|
||||
template_name="",
|
||||
resource_name="",
|
||||
footer="",
|
||||
minimized=True,
|
||||
param=None,
|
||||
)
|
||||
|
||||
set_liquid_index = 0
|
||||
|
||||
for labware_id, item in labware_info.items():
|
||||
# 跳过 Tip/Rack 类型
|
||||
if "Rack" in str(labware_id) or "Tip" in str(labware_id):
|
||||
continue
|
||||
if item.get("type") == "hardware":
|
||||
continue
|
||||
|
||||
slot = str(item.get("slot", ""))
|
||||
wells = item.get("well", [])
|
||||
if not wells or not slot:
|
||||
continue
|
||||
|
||||
# res_id 不能有空格
|
||||
res_id = str(labware_id).replace(" ", "_")
|
||||
well_count = len(wells)
|
||||
|
||||
node_id = str(uuid.uuid4())
|
||||
set_liquid_index += 1
|
||||
|
||||
G.add_node(
|
||||
node_id,
|
||||
template_name="set_liquid_from_plate",
|
||||
resource_name="liquid_handler.prcxi",
|
||||
name=f"SetLiquid {set_liquid_index}",
|
||||
description=f"Set liquid: {labware_id}",
|
||||
lab_node_type="Reagent",
|
||||
footer="set_liquid_from_plate-liquid_handler.prcxi",
|
||||
device_name=DEVICE_NAME_DEFAULT,
|
||||
type=NODE_TYPE_DEFAULT,
|
||||
parent_uuid=set_liquid_group_id, # 指向 Group 节点
|
||||
minimized=True, # 折叠显示
|
||||
param={
|
||||
"plate": [], # 通过连接传递
|
||||
"well_names": wells, # 孔位名数组,如 ["A1", "A3", "A5"]
|
||||
"liquid_names": [res_id] * well_count,
|
||||
"volumes": [DEFAULT_LIQUID_VOLUME] * well_count,
|
||||
},
|
||||
)
|
||||
|
||||
# set_liquid_from_plate 之间不需要 ready 连接
|
||||
|
||||
# 物料流:create_resource 的 labware -> set_liquid_from_plate 的 input_plate
|
||||
create_res_node_id = slot_to_create_resource.get(slot)
|
||||
if create_res_node_id:
|
||||
G.add_edge(create_res_node_id, node_id, source_port="labware", target_port="input_plate")
|
||||
|
||||
# set_liquid_from_plate 的输出 output_wells 用于连接 transfer_liquid
|
||||
resource_last_writer[labware_id] = f"{node_id}:output_wells"
|
||||
|
||||
# transfer_liquid 之间通过 ready 串联,从 None 开始
|
||||
last_control_node_id = None
|
||||
|
||||
# 端口名称映射:JSON 字段名 -> 实际 handle key
|
||||
INPUT_PORT_MAPPING = {
|
||||
"sources": "sources_identifier",
|
||||
"targets": "targets_identifier",
|
||||
"vessel": "vessel",
|
||||
"to_vessel": "to_vessel",
|
||||
"from_vessel": "from_vessel",
|
||||
"reagent": "reagent",
|
||||
"solvent": "solvent",
|
||||
"compound": "compound",
|
||||
}
|
||||
|
||||
OUTPUT_PORT_MAPPING = {
|
||||
"sources": "sources_out", # 输出端口是 xxx_out
|
||||
"targets": "targets_out", # 输出端口是 xxx_out
|
||||
"vessel": "vessel_out",
|
||||
"to_vessel": "to_vessel_out",
|
||||
"from_vessel": "from_vessel_out",
|
||||
"filtrate_vessel": "filtrate_out",
|
||||
"reagent": "reagent",
|
||||
"solvent": "solvent",
|
||||
"compound": "compound",
|
||||
}
|
||||
|
||||
# 需要根据 wells 数量扩展的参数列表(复数形式)
|
||||
EXPAND_BY_WELLS_PARAMS = ["asp_vols", "dis_vols", "asp_flow_rates", "dis_flow_rates"]
|
||||
|
||||
# 处理协议步骤
|
||||
for step in protocol_steps:
|
||||
node_id = str(uuid.uuid4())
|
||||
params = step.get("param", {}).copy() # 复制一份,避免修改原数据
|
||||
connected_params = set() # 记录被连接的参数
|
||||
warnings = [] # 收集警告信息
|
||||
|
||||
# 参数重命名:单数 -> 复数
|
||||
for old_name, new_name in PARAM_RENAME_MAPPING.items():
|
||||
if old_name in params:
|
||||
params[new_name] = params.pop(old_name)
|
||||
|
||||
# 处理输入连接
|
||||
for param_key, target_port in INPUT_PORT_MAPPING.items():
|
||||
resource_name = params.get(param_key)
|
||||
if resource_name and resource_name in resource_last_writer:
|
||||
source_node, source_port = resource_last_writer[resource_name].split(":")
|
||||
G.add_edge(source_node, node_id, source_port=source_port, target_port=target_port)
|
||||
connected_params.add(param_key)
|
||||
elif resource_name and resource_name not in resource_last_writer:
|
||||
# 资源名在 labware_info 中不存在
|
||||
warnings.append(f"{param_key}={resource_name} 未找到")
|
||||
|
||||
# 获取 targets 对应的 wells 数量,用于扩展参数
|
||||
targets_name = params.get("targets")
|
||||
sources_name = params.get("sources")
|
||||
targets_wells_count = 1
|
||||
sources_wells_count = 1
|
||||
|
||||
if targets_name and targets_name in labware_info:
|
||||
target_wells = labware_info[targets_name].get("well", [])
|
||||
targets_wells_count = len(target_wells) if target_wells else 1
|
||||
elif targets_name:
|
||||
warnings.append(f"targets={targets_name} 未在 reagent 中定义")
|
||||
|
||||
if sources_name and sources_name in labware_info:
|
||||
source_wells = labware_info[sources_name].get("well", [])
|
||||
sources_wells_count = len(source_wells) if source_wells else 1
|
||||
elif sources_name:
|
||||
warnings.append(f"sources={sources_name} 未在 reagent 中定义")
|
||||
|
||||
# 检查 sources 和 targets 的 wells 数量是否匹配
|
||||
if targets_wells_count != sources_wells_count and targets_name and sources_name:
|
||||
warnings.append(f"wells 数量不匹配: sources={sources_wells_count}, targets={targets_wells_count}")
|
||||
|
||||
# 使用 targets 的 wells 数量来扩展参数
|
||||
wells_count = targets_wells_count
|
||||
|
||||
# 扩展单值参数为数组(根据 targets 的 wells 数量)
|
||||
for expand_param in EXPAND_BY_WELLS_PARAMS:
|
||||
if expand_param in params:
|
||||
value = params[expand_param]
|
||||
# 如果是单个值,扩展为数组
|
||||
if not isinstance(value, list):
|
||||
params[expand_param] = [value] * wells_count
|
||||
# 如果已经是数组但长度不对,记录警告
|
||||
elif len(value) != wells_count:
|
||||
warnings.append(f"{expand_param} 数量({len(value)})与 wells({wells_count})不匹配")
|
||||
|
||||
# 如果 sources/targets 已通过连接传递,将参数值改为空数组
|
||||
for param_key in connected_params:
|
||||
if param_key in params:
|
||||
params[param_key] = []
|
||||
|
||||
# 更新 step 的 param、footer、device_name 和 type
|
||||
step_copy = step.copy()
|
||||
step_copy["param"] = params
|
||||
step_copy["device_name"] = DEVICE_NAME_DEFAULT # 动作节点使用默认设备名
|
||||
step_copy["type"] = NODE_TYPE_DEFAULT # 节点类型
|
||||
|
||||
# 如果有警告,修改 footer 添加警告标记(警告放前面)
|
||||
if warnings:
|
||||
original_footer = step.get("footer", "")
|
||||
step_copy["footer"] = f"[WARN: {'; '.join(warnings)}] {original_footer}"
|
||||
|
||||
G.add_node(node_id, **step_copy)
|
||||
G.add_node(node_id, **step)
|
||||
|
||||
# 控制流
|
||||
if last_control_node_id is not None:
|
||||
G.add_edge(last_control_node_id, node_id, source_port="ready", target_port="ready")
|
||||
last_control_node_id = node_id
|
||||
|
||||
# 处理输出:更新 resource_last_writer
|
||||
for param_key, output_port in OUTPUT_PORT_MAPPING.items():
|
||||
resource_name = step.get("param", {}).get(param_key) # 使用原始参数值
|
||||
# 物料流
|
||||
params = step.get("param", {})
|
||||
input_resources_possible_names = [
|
||||
"vessel",
|
||||
"to_vessel",
|
||||
"from_vessel",
|
||||
"reagent",
|
||||
"solvent",
|
||||
"compound",
|
||||
"sources",
|
||||
"targets",
|
||||
]
|
||||
|
||||
for target_port in input_resources_possible_names:
|
||||
resource_name = params.get(target_port)
|
||||
if resource_name and resource_name in resource_last_writer:
|
||||
source_node, source_port = resource_last_writer[resource_name].split(":")
|
||||
G.add_edge(source_node, node_id, source_port=source_port, target_port=target_port)
|
||||
|
||||
output_resources = {
|
||||
"vessel_out": params.get("vessel"),
|
||||
"from_vessel_out": params.get("from_vessel"),
|
||||
"to_vessel_out": params.get("to_vessel"),
|
||||
"filtrate_out": params.get("filtrate_vessel"),
|
||||
"reagent": params.get("reagent"),
|
||||
"solvent": params.get("solvent"),
|
||||
"compound": params.get("compound"),
|
||||
"sources_out": params.get("sources"),
|
||||
"targets_out": params.get("targets"),
|
||||
}
|
||||
|
||||
for source_port, resource_name in output_resources.items():
|
||||
if resource_name:
|
||||
resource_last_writer[resource_name] = f"{node_id}:{output_port}"
|
||||
resource_last_writer[resource_name] = f"{node_id}:{source_port}"
|
||||
|
||||
return G
|
||||
|
||||
|
||||
@@ -1,68 +1,21 @@
|
||||
"""
|
||||
JSON 工作流转换模块
|
||||
|
||||
将 workflow/reagent 格式的 JSON 转换为统一工作流格式。
|
||||
|
||||
输入格式:
|
||||
{
|
||||
"workflow": [
|
||||
{"action": "...", "action_args": {...}},
|
||||
...
|
||||
],
|
||||
"reagent": {
|
||||
"reagent_name": {"slot": int, "well": [...], "labware": "..."},
|
||||
...
|
||||
}
|
||||
}
|
||||
提供从多种 JSON 格式转换为统一工作流格式的功能。
|
||||
支持的格式:
|
||||
1. workflow/reagent 格式
|
||||
2. steps_info/labware_info 格式
|
||||
"""
|
||||
|
||||
import json
|
||||
from os import PathLike
|
||||
from pathlib import Path
|
||||
from typing import Any, Dict, List, Optional, Tuple, Union
|
||||
from typing import Any, Dict, List, Optional, Set, Tuple, Union
|
||||
|
||||
from unilabos.workflow.common import WorkflowGraph, build_protocol_graph
|
||||
from unilabos.registry.registry import lab_registry
|
||||
|
||||
|
||||
# ==================== 字段映射配置 ====================
|
||||
|
||||
# action 到 resource_name 的映射
|
||||
ACTION_RESOURCE_MAPPING: Dict[str, str] = {
|
||||
# 生物实验操作
|
||||
"transfer_liquid": "liquid_handler.prcxi",
|
||||
"transfer": "liquid_handler.prcxi",
|
||||
"incubation": "incubator.prcxi",
|
||||
"move_labware": "labware_mover.prcxi",
|
||||
"oscillation": "shaker.prcxi",
|
||||
# 有机化学操作
|
||||
"HeatChillToTemp": "heatchill.chemputer",
|
||||
"StopHeatChill": "heatchill.chemputer",
|
||||
"StartHeatChill": "heatchill.chemputer",
|
||||
"HeatChill": "heatchill.chemputer",
|
||||
"Dissolve": "stirrer.chemputer",
|
||||
"Transfer": "liquid_handler.chemputer",
|
||||
"Evaporate": "rotavap.chemputer",
|
||||
"Recrystallize": "reactor.chemputer",
|
||||
"Filter": "filter.chemputer",
|
||||
"Dry": "dryer.chemputer",
|
||||
"Add": "liquid_handler.chemputer",
|
||||
}
|
||||
|
||||
# action_args 字段到 parameters 字段的映射
|
||||
# 格式: {"old_key": "new_key"}, 仅映射需要重命名的字段
|
||||
ARGS_FIELD_MAPPING: Dict[str, str] = {
|
||||
# 如果需要字段重命名,在这里配置
|
||||
# "old_field_name": "new_field_name",
|
||||
}
|
||||
|
||||
# 默认工作站名称
|
||||
DEFAULT_WORKSTATION = "PRCXI"
|
||||
|
||||
|
||||
# ==================== 核心转换函数 ====================
|
||||
|
||||
|
||||
def get_action_handles(resource_name: str, template_name: str) -> Dict[str, List[str]]:
|
||||
"""
|
||||
从 registry 获取指定设备和动作的 handles 配置
|
||||
@@ -86,10 +39,12 @@ def get_action_handles(resource_name: str, template_name: str) -> Dict[str, List
|
||||
handles = action_config.get("handles", {})
|
||||
|
||||
if isinstance(handles, dict):
|
||||
# 处理 input handles (作为 target)
|
||||
for handle in handles.get("input", []):
|
||||
handler_key = handle.get("handler_key", "")
|
||||
if handler_key:
|
||||
result["source"].append(handler_key)
|
||||
# 处理 output handles (作为 source)
|
||||
for handle in handles.get("output", []):
|
||||
handler_key = handle.get("handler_key", "")
|
||||
if handler_key:
|
||||
@@ -114,9 +69,12 @@ def validate_workflow_handles(graph: WorkflowGraph) -> Tuple[bool, List[str]]:
|
||||
for edge in graph.edges:
|
||||
left_uuid = edge.get("source")
|
||||
right_uuid = edge.get("target")
|
||||
# target_handle_key是target, right的输入节点(入节点)
|
||||
# source_handle_key是source, left的输出节点(出节点)
|
||||
right_source_conn_key = edge.get("target_handle_key", "")
|
||||
left_target_conn_key = edge.get("source_handle_key", "")
|
||||
|
||||
# 获取源节点和目标节点信息
|
||||
left_node = nodes.get(left_uuid, {})
|
||||
right_node = nodes.get(right_uuid, {})
|
||||
|
||||
@@ -125,93 +83,164 @@ def validate_workflow_handles(graph: WorkflowGraph) -> Tuple[bool, List[str]]:
|
||||
right_res_name = right_node.get("resource_name", "")
|
||||
right_template_name = right_node.get("template_name", "")
|
||||
|
||||
# 获取源节点的 output handles
|
||||
left_node_handles = get_action_handles(left_res_name, left_template_name)
|
||||
target_valid_keys = left_node_handles.get("target", [])
|
||||
target_valid_keys.append("ready")
|
||||
|
||||
# 获取目标节点的 input handles
|
||||
right_node_handles = get_action_handles(right_res_name, right_template_name)
|
||||
source_valid_keys = right_node_handles.get("source", [])
|
||||
source_valid_keys.append("ready")
|
||||
|
||||
# 验证目标节点(right)的输入端口
|
||||
# 如果节点配置了 output handles,则 source_port 必须有效
|
||||
if not right_source_conn_key:
|
||||
node_name = right_node.get("name", right_uuid[:8])
|
||||
errors.append(f"目标节点 '{node_name}' 的输入端口 (target_handle_key) 为空,应设置为: {source_valid_keys}")
|
||||
node_name = left_node.get("name", left_uuid[:8])
|
||||
errors.append(f"源节点 '{node_name}' 的 source_handle_key 为空," f"应设置为: {source_valid_keys}")
|
||||
elif right_source_conn_key not in source_valid_keys:
|
||||
node_name = right_node.get("name", right_uuid[:8])
|
||||
node_name = left_node.get("name", left_uuid[:8])
|
||||
errors.append(
|
||||
f"目标节点 '{node_name}' 的输入端口 '{right_source_conn_key}' 不存在,支持的输入端口: {source_valid_keys}"
|
||||
f"源节点 '{node_name}' 的 source 端点 '{right_source_conn_key}' 不存在," f"支持的端点: {source_valid_keys}"
|
||||
)
|
||||
|
||||
# 验证源节点(left)的输出端口
|
||||
# 如果节点配置了 input handles,则 target_port 必须有效
|
||||
if not left_target_conn_key:
|
||||
node_name = left_node.get("name", left_uuid[:8])
|
||||
errors.append(f"源节点 '{node_name}' 的输出端口 (source_handle_key) 为空,应设置为: {target_valid_keys}")
|
||||
node_name = right_node.get("name", right_uuid[:8])
|
||||
errors.append(f"目标节点 '{node_name}' 的 target_handle_key 为空," f"应设置为: {target_valid_keys}")
|
||||
elif left_target_conn_key not in target_valid_keys:
|
||||
node_name = left_node.get("name", left_uuid[:8])
|
||||
node_name = right_node.get("name", right_uuid[:8])
|
||||
errors.append(
|
||||
f"源节点 '{node_name}' 的输出端口 '{left_target_conn_key}' 不存在,支持的输出端口: {target_valid_keys}"
|
||||
f"目标节点 '{node_name}' 的 target 端点 '{left_target_conn_key}' 不存在,"
|
||||
f"支持的端点: {target_valid_keys}"
|
||||
)
|
||||
|
||||
return len(errors) == 0, errors
|
||||
|
||||
|
||||
def normalize_workflow_steps(workflow: List[Dict[str, Any]]) -> List[Dict[str, Any]]:
|
||||
# action 到 resource_name 的映射
|
||||
ACTION_RESOURCE_MAPPING: Dict[str, str] = {
|
||||
# 生物实验操作
|
||||
"transfer_liquid": "liquid_handler.prcxi",
|
||||
"transfer": "liquid_handler.prcxi",
|
||||
"incubation": "incubator.prcxi",
|
||||
"move_labware": "labware_mover.prcxi",
|
||||
"oscillation": "shaker.prcxi",
|
||||
# 有机化学操作
|
||||
"HeatChillToTemp": "heatchill.chemputer",
|
||||
"StopHeatChill": "heatchill.chemputer",
|
||||
"StartHeatChill": "heatchill.chemputer",
|
||||
"HeatChill": "heatchill.chemputer",
|
||||
"Dissolve": "stirrer.chemputer",
|
||||
"Transfer": "liquid_handler.chemputer",
|
||||
"Evaporate": "rotavap.chemputer",
|
||||
"Recrystallize": "reactor.chemputer",
|
||||
"Filter": "filter.chemputer",
|
||||
"Dry": "dryer.chemputer",
|
||||
"Add": "liquid_handler.chemputer",
|
||||
}
|
||||
|
||||
|
||||
def normalize_steps(data: List[Dict[str, Any]]) -> List[Dict[str, Any]]:
|
||||
"""
|
||||
将 workflow 格式的步骤数据规范化
|
||||
将不同格式的步骤数据规范化为统一格式
|
||||
|
||||
输入格式:
|
||||
[{"action": "...", "action_args": {...}}, ...]
|
||||
|
||||
输出格式:
|
||||
[{"action": "...", "parameters": {...}, "step_number": int}, ...]
|
||||
支持的输入格式:
|
||||
- action + parameters
|
||||
- action + action_args
|
||||
- operation + parameters
|
||||
|
||||
Args:
|
||||
workflow: workflow 数组
|
||||
data: 原始步骤数据列表
|
||||
|
||||
Returns:
|
||||
规范化后的步骤列表
|
||||
规范化后的步骤列表,格式为 [{"action": str, "parameters": dict, "description": str?, "step_number": int?}, ...]
|
||||
"""
|
||||
normalized = []
|
||||
for idx, step in enumerate(workflow):
|
||||
action = step.get("action")
|
||||
for idx, step in enumerate(data):
|
||||
# 获取动作名称(支持 action 或 operation 字段)
|
||||
action = step.get("action") or step.get("operation")
|
||||
if not action:
|
||||
continue
|
||||
|
||||
# 获取参数: action_args
|
||||
raw_params = step.get("action_args", {})
|
||||
params = {}
|
||||
# 获取参数(支持 parameters 或 action_args 字段)
|
||||
raw_params = step.get("parameters") or step.get("action_args") or {}
|
||||
params = dict(raw_params)
|
||||
|
||||
# 应用字段映射
|
||||
for key, value in raw_params.items():
|
||||
mapped_key = ARGS_FIELD_MAPPING.get(key, key)
|
||||
params[mapped_key] = value
|
||||
# 规范化 source/target -> sources/targets
|
||||
if "source" in raw_params and "sources" not in raw_params:
|
||||
params["sources"] = raw_params["source"]
|
||||
if "target" in raw_params and "targets" not in raw_params:
|
||||
params["targets"] = raw_params["target"]
|
||||
|
||||
step_dict = {
|
||||
"action": action,
|
||||
"parameters": params,
|
||||
"step_number": idx + 1,
|
||||
}
|
||||
# 获取描述(支持 description 或 purpose 字段)
|
||||
description = step.get("description") or step.get("purpose")
|
||||
|
||||
# 保留描述字段
|
||||
if "description" in step:
|
||||
step_dict["description"] = step["description"]
|
||||
# 获取步骤编号(优先使用原始数据中的 step_number,否则使用索引+1)
|
||||
step_number = step.get("step_number", idx + 1)
|
||||
|
||||
step_dict = {"action": action, "parameters": params, "step_number": step_number}
|
||||
if description:
|
||||
step_dict["description"] = description
|
||||
|
||||
normalized.append(step_dict)
|
||||
|
||||
return normalized
|
||||
|
||||
|
||||
def normalize_labware(data: List[Dict[str, Any]]) -> Dict[str, Dict[str, Any]]:
|
||||
"""
|
||||
将不同格式的 labware 数据规范化为统一的字典格式
|
||||
|
||||
支持的输入格式:
|
||||
- reagent_name + material_name + positions
|
||||
- name + labware + slot
|
||||
|
||||
Args:
|
||||
data: 原始 labware 数据列表
|
||||
|
||||
Returns:
|
||||
规范化后的 labware 字典,格式为 {name: {"slot": int, "labware": str, "well": list, "type": str, "role": str, "name": str}, ...}
|
||||
"""
|
||||
labware = {}
|
||||
for item in data:
|
||||
# 获取 key 名称(优先使用 reagent_name,其次是 material_name 或 name)
|
||||
reagent_name = item.get("reagent_name")
|
||||
key = reagent_name or item.get("material_name") or item.get("name")
|
||||
if not key:
|
||||
continue
|
||||
|
||||
key = str(key)
|
||||
|
||||
# 处理重复 key,自动添加后缀
|
||||
idx = 1
|
||||
original_key = key
|
||||
while key in labware:
|
||||
idx += 1
|
||||
key = f"{original_key}_{idx}"
|
||||
|
||||
labware[key] = {
|
||||
"slot": item.get("positions") or item.get("slot"),
|
||||
"labware": item.get("material_name") or item.get("labware"),
|
||||
"well": item.get("well", []),
|
||||
"type": item.get("type", "reagent"),
|
||||
"role": item.get("role", ""),
|
||||
"name": key,
|
||||
}
|
||||
|
||||
return labware
|
||||
|
||||
|
||||
def convert_from_json(
|
||||
data: Union[str, PathLike, Dict[str, Any]],
|
||||
workstation_name: str = DEFAULT_WORKSTATION,
|
||||
workstation_name: str = "PRCXi",
|
||||
validate: bool = True,
|
||||
) -> WorkflowGraph:
|
||||
"""
|
||||
从 JSON 数据或文件转换为 WorkflowGraph
|
||||
|
||||
JSON 格式:
|
||||
{"workflow": [...], "reagent": {...}}
|
||||
支持的 JSON 格式:
|
||||
1. {"workflow": [...], "reagent": {...}} - 直接格式
|
||||
2. {"steps_info": [...], "labware_info": [...]} - 需要规范化的格式
|
||||
|
||||
Args:
|
||||
data: JSON 文件路径、字典数据、或 JSON 字符串
|
||||
@@ -222,7 +251,7 @@ def convert_from_json(
|
||||
WorkflowGraph: 构建好的工作流图
|
||||
|
||||
Raises:
|
||||
ValueError: 不支持的 JSON 格式
|
||||
ValueError: 不支持的 JSON 格式 或 句柄校验失败
|
||||
FileNotFoundError: 文件不存在
|
||||
json.JSONDecodeError: JSON 解析失败
|
||||
"""
|
||||
@@ -233,6 +262,7 @@ def convert_from_json(
|
||||
with path.open("r", encoding="utf-8") as fp:
|
||||
json_data = json.load(fp)
|
||||
elif isinstance(data, str):
|
||||
# 尝试作为 JSON 字符串解析
|
||||
json_data = json.loads(data)
|
||||
else:
|
||||
raise FileNotFoundError(f"文件不存在: {data}")
|
||||
@@ -241,24 +271,30 @@ def convert_from_json(
|
||||
else:
|
||||
raise TypeError(f"不支持的数据类型: {type(data)}")
|
||||
|
||||
# 校验格式
|
||||
if "workflow" not in json_data or "reagent" not in json_data:
|
||||
# 根据格式解析数据
|
||||
if "workflow" in json_data and "reagent" in json_data:
|
||||
# 格式1: workflow/reagent(已经是规范格式)
|
||||
protocol_steps = json_data["workflow"]
|
||||
labware_info = json_data["reagent"]
|
||||
elif "steps_info" in json_data and "labware_info" in json_data:
|
||||
# 格式2: steps_info/labware_info(需要规范化)
|
||||
protocol_steps = normalize_steps(json_data["steps_info"])
|
||||
labware_info = normalize_labware(json_data["labware_info"])
|
||||
elif "steps" in json_data and "labware" in json_data:
|
||||
# 格式3: steps/labware(另一种常见格式)
|
||||
protocol_steps = normalize_steps(json_data["steps"])
|
||||
if isinstance(json_data["labware"], list):
|
||||
labware_info = normalize_labware(json_data["labware"])
|
||||
else:
|
||||
labware_info = json_data["labware"]
|
||||
else:
|
||||
raise ValueError(
|
||||
"不支持的 JSON 格式。请使用标准格式:\n"
|
||||
'{"workflow": [{"action": "...", "action_args": {...}}, ...], '
|
||||
'"reagent": {"name": {"slot": int, "well": [...], "labware": "..."}, ...}}'
|
||||
"不支持的 JSON 格式。支持的格式:\n"
|
||||
"1. {'workflow': [...], 'reagent': {...}}\n"
|
||||
"2. {'steps_info': [...], 'labware_info': [...]}\n"
|
||||
"3. {'steps': [...], 'labware': [...]}"
|
||||
)
|
||||
|
||||
# 提取数据
|
||||
workflow = json_data["workflow"]
|
||||
reagent = json_data["reagent"]
|
||||
|
||||
# 规范化步骤数据
|
||||
protocol_steps = normalize_workflow_steps(workflow)
|
||||
|
||||
# reagent 已经是字典格式,直接使用
|
||||
labware_info = reagent
|
||||
|
||||
# 构建工作流图
|
||||
graph = build_protocol_graph(
|
||||
labware_info=labware_info,
|
||||
@@ -281,7 +317,7 @@ def convert_from_json(
|
||||
|
||||
def convert_json_to_node_link(
|
||||
data: Union[str, PathLike, Dict[str, Any]],
|
||||
workstation_name: str = DEFAULT_WORKSTATION,
|
||||
workstation_name: str = "PRCXi",
|
||||
) -> Dict[str, Any]:
|
||||
"""
|
||||
将 JSON 数据转换为 node-link 格式的字典
|
||||
@@ -299,7 +335,7 @@ def convert_json_to_node_link(
|
||||
|
||||
def convert_json_to_workflow_list(
|
||||
data: Union[str, PathLike, Dict[str, Any]],
|
||||
workstation_name: str = DEFAULT_WORKSTATION,
|
||||
workstation_name: str = "PRCXi",
|
||||
) -> List[Dict[str, Any]]:
|
||||
"""
|
||||
将 JSON 数据转换为工作流列表格式
|
||||
@@ -313,3 +349,8 @@ def convert_json_to_workflow_list(
|
||||
"""
|
||||
graph = convert_from_json(data, workstation_name)
|
||||
return graph.to_dict()
|
||||
|
||||
|
||||
# 为了向后兼容,保留下划线前缀的别名
|
||||
_normalize_steps = normalize_steps
|
||||
_normalize_labware = normalize_labware
|
||||
|
||||
@@ -1,356 +0,0 @@
|
||||
"""
|
||||
JSON 工作流转换模块
|
||||
|
||||
提供从多种 JSON 格式转换为统一工作流格式的功能。
|
||||
支持的格式:
|
||||
1. workflow/reagent 格式
|
||||
2. steps_info/labware_info 格式
|
||||
"""
|
||||
|
||||
import json
|
||||
from os import PathLike
|
||||
from pathlib import Path
|
||||
from typing import Any, Dict, List, Optional, Set, Tuple, Union
|
||||
|
||||
from unilabos.workflow.common import WorkflowGraph, build_protocol_graph
|
||||
from unilabos.registry.registry import lab_registry
|
||||
|
||||
|
||||
def get_action_handles(resource_name: str, template_name: str) -> Dict[str, List[str]]:
|
||||
"""
|
||||
从 registry 获取指定设备和动作的 handles 配置
|
||||
|
||||
Args:
|
||||
resource_name: 设备资源名称,如 "liquid_handler.prcxi"
|
||||
template_name: 动作模板名称,如 "transfer_liquid"
|
||||
|
||||
Returns:
|
||||
包含 source 和 target handler_keys 的字典:
|
||||
{"source": ["sources_out", "targets_out", ...], "target": ["sources", "targets", ...]}
|
||||
"""
|
||||
result = {"source": [], "target": []}
|
||||
|
||||
device_info = lab_registry.device_type_registry.get(resource_name, {})
|
||||
if not device_info:
|
||||
return result
|
||||
|
||||
action_mappings = device_info.get("class", {}).get("action_value_mappings", {})
|
||||
action_config = action_mappings.get(template_name, {})
|
||||
handles = action_config.get("handles", {})
|
||||
|
||||
if isinstance(handles, dict):
|
||||
# 处理 input handles (作为 target)
|
||||
for handle in handles.get("input", []):
|
||||
handler_key = handle.get("handler_key", "")
|
||||
if handler_key:
|
||||
result["source"].append(handler_key)
|
||||
# 处理 output handles (作为 source)
|
||||
for handle in handles.get("output", []):
|
||||
handler_key = handle.get("handler_key", "")
|
||||
if handler_key:
|
||||
result["target"].append(handler_key)
|
||||
|
||||
return result
|
||||
|
||||
|
||||
def validate_workflow_handles(graph: WorkflowGraph) -> Tuple[bool, List[str]]:
|
||||
"""
|
||||
校验工作流图中所有边的句柄配置是否正确
|
||||
|
||||
Args:
|
||||
graph: 工作流图对象
|
||||
|
||||
Returns:
|
||||
(is_valid, errors): 是否有效,错误信息列表
|
||||
"""
|
||||
errors = []
|
||||
nodes = graph.nodes
|
||||
|
||||
for edge in graph.edges:
|
||||
left_uuid = edge.get("source")
|
||||
right_uuid = edge.get("target")
|
||||
# target_handle_key是target, right的输入节点(入节点)
|
||||
# source_handle_key是source, left的输出节点(出节点)
|
||||
right_source_conn_key = edge.get("target_handle_key", "")
|
||||
left_target_conn_key = edge.get("source_handle_key", "")
|
||||
|
||||
# 获取源节点和目标节点信息
|
||||
left_node = nodes.get(left_uuid, {})
|
||||
right_node = nodes.get(right_uuid, {})
|
||||
|
||||
left_res_name = left_node.get("resource_name", "")
|
||||
left_template_name = left_node.get("template_name", "")
|
||||
right_res_name = right_node.get("resource_name", "")
|
||||
right_template_name = right_node.get("template_name", "")
|
||||
|
||||
# 获取源节点的 output handles
|
||||
left_node_handles = get_action_handles(left_res_name, left_template_name)
|
||||
target_valid_keys = left_node_handles.get("target", [])
|
||||
target_valid_keys.append("ready")
|
||||
|
||||
# 获取目标节点的 input handles
|
||||
right_node_handles = get_action_handles(right_res_name, right_template_name)
|
||||
source_valid_keys = right_node_handles.get("source", [])
|
||||
source_valid_keys.append("ready")
|
||||
|
||||
# 如果节点配置了 output handles,则 source_port 必须有效
|
||||
if not right_source_conn_key:
|
||||
node_name = left_node.get("name", left_uuid[:8])
|
||||
errors.append(f"源节点 '{node_name}' 的 source_handle_key 为空," f"应设置为: {source_valid_keys}")
|
||||
elif right_source_conn_key not in source_valid_keys:
|
||||
node_name = left_node.get("name", left_uuid[:8])
|
||||
errors.append(
|
||||
f"源节点 '{node_name}' 的 source 端点 '{right_source_conn_key}' 不存在," f"支持的端点: {source_valid_keys}"
|
||||
)
|
||||
|
||||
# 如果节点配置了 input handles,则 target_port 必须有效
|
||||
if not left_target_conn_key:
|
||||
node_name = right_node.get("name", right_uuid[:8])
|
||||
errors.append(f"目标节点 '{node_name}' 的 target_handle_key 为空," f"应设置为: {target_valid_keys}")
|
||||
elif left_target_conn_key not in target_valid_keys:
|
||||
node_name = right_node.get("name", right_uuid[:8])
|
||||
errors.append(
|
||||
f"目标节点 '{node_name}' 的 target 端点 '{left_target_conn_key}' 不存在,"
|
||||
f"支持的端点: {target_valid_keys}"
|
||||
)
|
||||
|
||||
return len(errors) == 0, errors
|
||||
|
||||
|
||||
# action 到 resource_name 的映射
|
||||
ACTION_RESOURCE_MAPPING: Dict[str, str] = {
|
||||
# 生物实验操作
|
||||
"transfer_liquid": "liquid_handler.prcxi",
|
||||
"transfer": "liquid_handler.prcxi",
|
||||
"incubation": "incubator.prcxi",
|
||||
"move_labware": "labware_mover.prcxi",
|
||||
"oscillation": "shaker.prcxi",
|
||||
# 有机化学操作
|
||||
"HeatChillToTemp": "heatchill.chemputer",
|
||||
"StopHeatChill": "heatchill.chemputer",
|
||||
"StartHeatChill": "heatchill.chemputer",
|
||||
"HeatChill": "heatchill.chemputer",
|
||||
"Dissolve": "stirrer.chemputer",
|
||||
"Transfer": "liquid_handler.chemputer",
|
||||
"Evaporate": "rotavap.chemputer",
|
||||
"Recrystallize": "reactor.chemputer",
|
||||
"Filter": "filter.chemputer",
|
||||
"Dry": "dryer.chemputer",
|
||||
"Add": "liquid_handler.chemputer",
|
||||
}
|
||||
|
||||
|
||||
def normalize_steps(data: List[Dict[str, Any]]) -> List[Dict[str, Any]]:
|
||||
"""
|
||||
将不同格式的步骤数据规范化为统一格式
|
||||
|
||||
支持的输入格式:
|
||||
- action + parameters
|
||||
- action + action_args
|
||||
- operation + parameters
|
||||
|
||||
Args:
|
||||
data: 原始步骤数据列表
|
||||
|
||||
Returns:
|
||||
规范化后的步骤列表,格式为 [{"action": str, "parameters": dict, "description": str?, "step_number": int?}, ...]
|
||||
"""
|
||||
normalized = []
|
||||
for idx, step in enumerate(data):
|
||||
# 获取动作名称(支持 action 或 operation 字段)
|
||||
action = step.get("action") or step.get("operation")
|
||||
if not action:
|
||||
continue
|
||||
|
||||
# 获取参数(支持 parameters 或 action_args 字段)
|
||||
raw_params = step.get("parameters") or step.get("action_args") or {}
|
||||
params = dict(raw_params)
|
||||
|
||||
# 规范化 source/target -> sources/targets
|
||||
if "source" in raw_params and "sources" not in raw_params:
|
||||
params["sources"] = raw_params["source"]
|
||||
if "target" in raw_params and "targets" not in raw_params:
|
||||
params["targets"] = raw_params["target"]
|
||||
|
||||
# 获取描述(支持 description 或 purpose 字段)
|
||||
description = step.get("description") or step.get("purpose")
|
||||
|
||||
# 获取步骤编号(优先使用原始数据中的 step_number,否则使用索引+1)
|
||||
step_number = step.get("step_number", idx + 1)
|
||||
|
||||
step_dict = {"action": action, "parameters": params, "step_number": step_number}
|
||||
if description:
|
||||
step_dict["description"] = description
|
||||
|
||||
normalized.append(step_dict)
|
||||
|
||||
return normalized
|
||||
|
||||
|
||||
def normalize_labware(data: List[Dict[str, Any]]) -> Dict[str, Dict[str, Any]]:
|
||||
"""
|
||||
将不同格式的 labware 数据规范化为统一的字典格式
|
||||
|
||||
支持的输入格式:
|
||||
- reagent_name + material_name + positions
|
||||
- name + labware + slot
|
||||
|
||||
Args:
|
||||
data: 原始 labware 数据列表
|
||||
|
||||
Returns:
|
||||
规范化后的 labware 字典,格式为 {name: {"slot": int, "labware": str, "well": list, "type": str, "role": str, "name": str}, ...}
|
||||
"""
|
||||
labware = {}
|
||||
for item in data:
|
||||
# 获取 key 名称(优先使用 reagent_name,其次是 material_name 或 name)
|
||||
reagent_name = item.get("reagent_name")
|
||||
key = reagent_name or item.get("material_name") or item.get("name")
|
||||
if not key:
|
||||
continue
|
||||
|
||||
key = str(key)
|
||||
|
||||
# 处理重复 key,自动添加后缀
|
||||
idx = 1
|
||||
original_key = key
|
||||
while key in labware:
|
||||
idx += 1
|
||||
key = f"{original_key}_{idx}"
|
||||
|
||||
labware[key] = {
|
||||
"slot": item.get("positions") or item.get("slot"),
|
||||
"labware": item.get("material_name") or item.get("labware"),
|
||||
"well": item.get("well", []),
|
||||
"type": item.get("type", "reagent"),
|
||||
"role": item.get("role", ""),
|
||||
"name": key,
|
||||
}
|
||||
|
||||
return labware
|
||||
|
||||
|
||||
def convert_from_json(
|
||||
data: Union[str, PathLike, Dict[str, Any]],
|
||||
workstation_name: str = "PRCXi",
|
||||
validate: bool = True,
|
||||
) -> WorkflowGraph:
|
||||
"""
|
||||
从 JSON 数据或文件转换为 WorkflowGraph
|
||||
|
||||
支持的 JSON 格式:
|
||||
1. {"workflow": [...], "reagent": {...}} - 直接格式
|
||||
2. {"steps_info": [...], "labware_info": [...]} - 需要规范化的格式
|
||||
|
||||
Args:
|
||||
data: JSON 文件路径、字典数据、或 JSON 字符串
|
||||
workstation_name: 工作站名称,默认 "PRCXi"
|
||||
validate: 是否校验句柄配置,默认 True
|
||||
|
||||
Returns:
|
||||
WorkflowGraph: 构建好的工作流图
|
||||
|
||||
Raises:
|
||||
ValueError: 不支持的 JSON 格式 或 句柄校验失败
|
||||
FileNotFoundError: 文件不存在
|
||||
json.JSONDecodeError: JSON 解析失败
|
||||
"""
|
||||
# 处理输入数据
|
||||
if isinstance(data, (str, PathLike)):
|
||||
path = Path(data)
|
||||
if path.exists():
|
||||
with path.open("r", encoding="utf-8") as fp:
|
||||
json_data = json.load(fp)
|
||||
elif isinstance(data, str):
|
||||
# 尝试作为 JSON 字符串解析
|
||||
json_data = json.loads(data)
|
||||
else:
|
||||
raise FileNotFoundError(f"文件不存在: {data}")
|
||||
elif isinstance(data, dict):
|
||||
json_data = data
|
||||
else:
|
||||
raise TypeError(f"不支持的数据类型: {type(data)}")
|
||||
|
||||
# 根据格式解析数据
|
||||
if "workflow" in json_data and "reagent" in json_data:
|
||||
# 格式1: workflow/reagent(已经是规范格式)
|
||||
protocol_steps = json_data["workflow"]
|
||||
labware_info = json_data["reagent"]
|
||||
elif "steps_info" in json_data and "labware_info" in json_data:
|
||||
# 格式2: steps_info/labware_info(需要规范化)
|
||||
protocol_steps = normalize_steps(json_data["steps_info"])
|
||||
labware_info = normalize_labware(json_data["labware_info"])
|
||||
elif "steps" in json_data and "labware" in json_data:
|
||||
# 格式3: steps/labware(另一种常见格式)
|
||||
protocol_steps = normalize_steps(json_data["steps"])
|
||||
if isinstance(json_data["labware"], list):
|
||||
labware_info = normalize_labware(json_data["labware"])
|
||||
else:
|
||||
labware_info = json_data["labware"]
|
||||
else:
|
||||
raise ValueError(
|
||||
"不支持的 JSON 格式。支持的格式:\n"
|
||||
"1. {'workflow': [...], 'reagent': {...}}\n"
|
||||
"2. {'steps_info': [...], 'labware_info': [...]}\n"
|
||||
"3. {'steps': [...], 'labware': [...]}"
|
||||
)
|
||||
|
||||
# 构建工作流图
|
||||
graph = build_protocol_graph(
|
||||
labware_info=labware_info,
|
||||
protocol_steps=protocol_steps,
|
||||
workstation_name=workstation_name,
|
||||
action_resource_mapping=ACTION_RESOURCE_MAPPING,
|
||||
)
|
||||
|
||||
# 校验句柄配置
|
||||
if validate:
|
||||
is_valid, errors = validate_workflow_handles(graph)
|
||||
if not is_valid:
|
||||
import warnings
|
||||
|
||||
for error in errors:
|
||||
warnings.warn(f"句柄校验警告: {error}")
|
||||
|
||||
return graph
|
||||
|
||||
|
||||
def convert_json_to_node_link(
|
||||
data: Union[str, PathLike, Dict[str, Any]],
|
||||
workstation_name: str = "PRCXi",
|
||||
) -> Dict[str, Any]:
|
||||
"""
|
||||
将 JSON 数据转换为 node-link 格式的字典
|
||||
|
||||
Args:
|
||||
data: JSON 文件路径、字典数据、或 JSON 字符串
|
||||
workstation_name: 工作站名称,默认 "PRCXi"
|
||||
|
||||
Returns:
|
||||
Dict: node-link 格式的工作流数据
|
||||
"""
|
||||
graph = convert_from_json(data, workstation_name)
|
||||
return graph.to_node_link_dict()
|
||||
|
||||
|
||||
def convert_json_to_workflow_list(
|
||||
data: Union[str, PathLike, Dict[str, Any]],
|
||||
workstation_name: str = "PRCXi",
|
||||
) -> List[Dict[str, Any]]:
|
||||
"""
|
||||
将 JSON 数据转换为工作流列表格式
|
||||
|
||||
Args:
|
||||
data: JSON 文件路径、字典数据、或 JSON 字符串
|
||||
workstation_name: 工作站名称,默认 "PRCXi"
|
||||
|
||||
Returns:
|
||||
List: 工作流节点列表
|
||||
"""
|
||||
graph = convert_from_json(data, workstation_name)
|
||||
return graph.to_dict()
|
||||
|
||||
|
||||
# 为了向后兼容,保留下划线前缀的别名
|
||||
_normalize_steps = normalize_steps
|
||||
_normalize_labware = normalize_labware
|
||||
@@ -2,7 +2,7 @@
|
||||
<?xml-model href="http://download.ros.org/schema/package_format3.xsd" schematypens="http://www.w3.org/2001/XMLSchema"?>
|
||||
<package format="3">
|
||||
<name>unilabos_msgs</name>
|
||||
<version>0.10.17</version>
|
||||
<version>0.10.15</version>
|
||||
<description>ROS2 Messages package for unilabos devices</description>
|
||||
<maintainer email="changjh@pku.edu.cn">Junhan Chang</maintainer>
|
||||
<maintainer email="18435084+Xuwznln@users.noreply.github.com">Xuwznln</maintainer>
|
||||
|
||||
Reference in New Issue
Block a user