Refactor: Use instance attributes for action names and workflow step IDs

- Updated the module path for BioyondDispensingStation in bioyond_dispensing_station.yaml to reflect the new directory structure.
- Updated the module path for BioyondReactionStation and BioyondReactor in reaction_station_bioyond.yaml to align with the revised organization of the codebase.

.conda/recipe.yaml

@@ -1,6 +1,6 @@
 package:
   name: unilabos
-  version: 0.10.14
+  version: 0.10.15
 
 source:
   path: ../unilabos

.github/workflows/conda-pack-build.yml

@@ -24,7 +24,7 @@ jobs:
             platform: linux-64
             env_file: unilabos-linux-64.yaml
             script_ext: sh
-          - os: macos-13 # Intel
+          - os: macos-15 # Intel (via Rosetta)
             platform: osx-64
             env_file: unilabos-osx-64.yaml
             script_ext: sh

.github/workflows/multi-platform-build.yml

@@ -27,7 +27,7 @@ jobs:
           - os: ubuntu-latest
             platform: linux-64
             env_file: unilabos-linux-64.yaml
-          - os: macos-13 # Intel
+          - os: macos-15 # Intel (via Rosetta)
             platform: osx-64
             env_file: unilabos-osx-64.yaml
           - os: macos-latest # ARM64

.github/workflows/unilabos-conda-build.yml

@@ -26,7 +26,7 @@ jobs:
         include:
           - os: ubuntu-latest
             platform: linux-64
-          - os: macos-13 # Intel
+          - os: macos-15 # Intel (via Rosetta)
             platform: osx-64
           - os: macos-latest # ARM64
             platform: osx-arm64

README.md

@@ -31,7 +31,9 @@ Detailed documentation can be found at:
 
 ## Quick Start
 
-Uni-Lab-OS recommends using `mamba` for environment management. Choose the appropriate environment file for your operating system:
+1. Setup Conda Environment
+
+Uni-Lab-OS recommends using `mamba` for environment management:
 
 ```bash
 # Create new environment
@@ -40,7 +42,7 @@ mamba activate unilab
 mamba install -n unilab uni-lab::unilabos -c robostack-staging -c conda-forge
 ```
 
-## Install Dev Uni-Lab-OS
+2. Install Dev Uni-Lab-OS
 
 ```bash
 # Clone the repository
@@ -51,17 +53,21 @@ cd Uni-Lab-OS
 pip install .
 ```
 
-3. Start Uni-Lab System:
+3. Start Uni-Lab System
 
 Please refer to [Documentation - Boot Examples](https://deepmodeling.github.io/Uni-Lab-OS/boot_examples/index.html)
 
+4. Best Practice
+
+See [Best Practice Guide](https://deepmodeling.github.io/Uni-Lab-OS/user_guide/best_practice.html)
+
 ## Message Format
 
 Uni-Lab-OS uses pre-built `unilabos_msgs` for system communication. You can find the built versions on the [GitHub Releases](https://github.com/deepmodeling/Uni-Lab-OS/releases) page.
 
 ## Citation
 
-If you use Uni-Lab-OS in academic research, please cite:
+If you use [Uni-Lab-OS](https://arxiv.org/abs/2512.21766) in academic research, please cite:
 
 ```bibtex
 @article{gao2025unilabos,

README_zh.md

@@ -53,17 +53,21 @@ cd Uni-Lab-OS
 pip install .
 ```
 
-3. 启动 Uni-Lab 系统:
+3. 启动 Uni-Lab 系统
 
 请见[文档-启动样例](https://deepmodeling.github.io/Uni-Lab-OS/boot_examples/index.html)
 
+4. 最佳实践
+
+请见[最佳实践指南](https://deepmodeling.github.io/Uni-Lab-OS/user_guide/best_practice.html)
+
 ## 消息格式
 
 Uni-Lab-OS 使用预构建的 `unilabos_msgs` 进行系统通信。您可以在 [GitHub Releases](https://github.com/deepmodeling/Uni-Lab-OS/releases) 页面找到已构建的版本。
 
 ## 引用
 
-如果您在学术研究中使用 Uni-Lab-OS，请引用：
+如果您在学术研究中使用 [Uni-Lab-OS](https://arxiv.org/abs/2512.21766)，请引用：
 
 ```bibtex
 @article{gao2025unilabos,

docs/conf.py

@@ -24,7 +24,7 @@ extensions = [
     "sphinx.ext.autodoc",
     "sphinx.ext.napoleon",  # 如果您使用 Google 或 NumPy 风格的 docstrings
     "sphinx_rtd_theme",
-    "sphinxcontrib.mermaid"
+    "sphinxcontrib.mermaid",
 ]
 
 source_suffix = {
@@ -58,7 +58,7 @@ html_theme = "sphinx_rtd_theme"
 
 # sphinx-book-theme 主题选项
 html_theme_options = {
-    "repository_url": "https://github.com/用户名/Uni-Lab",
+    "repository_url": "https://github.com/deepmodeling/Uni-Lab-OS",
     "use_repository_button": True,
     "use_issues_button": True,
     "use_edit_page_button": True,

docs/requirements.txt

@@ -12,3 +12,7 @@ sphinx-copybutton>=0.5.0
 
 # 用于自动摘要生成
 sphinx-autobuild>=2024.2.4
+
+# 用于PDF导出 (rinohtype方案，纯Python无需LaTeX)
+rinohtype>=0.5.4
+sphinx-simplepdf>=1.6.0

docs/user_guide/graph_files.md

@@ -463,7 +463,7 @@ Uni-Lab 使用 `ResourceDictInstance.get_resource_instance_from_dict()` 方法
 ### 使用示例
 
 ```python
-from unilabos.ros.nodes.resource_tracker import ResourceDictInstance
+from unilabos.resources.resource_tracker import ResourceDictInstance
 
 # 旧格式节点
 old_format_node = {
@@ -477,10 +477,10 @@ old_format_node = {
 instance = ResourceDictInstance.get_resource_instance_from_dict(old_format_node)
 
 # 访问标准化后的数据
-print(instance.res_content.id)      # "pump_1"
-print(instance.res_content.uuid)    # 自动生成的 UUID
+print(instance.res_content.id)  # "pump_1"
+print(instance.res_content.uuid)  # 自动生成的 UUID
 print(instance.res_content.config)  # {}
-print(instance.res_content.data)    # {}
+print(instance.res_content.data)  # {}
 ```
 
 ### 格式迁移建议

recipes/msgs/recipe.yaml

@@ -1,6 +1,6 @@
 package:
   name: ros-humble-unilabos-msgs
-  version: 0.10.14
+  version: 0.10.15
 source:
   path: ../../unilabos_msgs
   target_directory: src

recipes/unilabos/recipe.yaml

@@ -1,6 +1,6 @@
 package:
   name: unilabos
-  version: "0.10.14"
+  version: "0.10.15"
 
 source:
   path: ../..

scripts/workflow.py

@@ -2,7 +2,6 @@ import json
 import logging
 import traceback
 import uuid
-import xml.etree.ElementTree as ET
 from typing import Any, Dict, List
 
 import networkx as nx
@@ -25,7 +24,15 @@ class SimpleGraph:
 
     def add_edge(self, source, target, **attrs):
         """添加边"""
-        edge = {"source": source, "target": target, **attrs}
+        # edge = {"source": source, "target": target, **attrs}
+        edge = {
+            "source": source, "target": target,
+            "source_node_uuid": source,
+            "target_node_uuid": target,
+            "source_handle_io": "source",
+            "target_handle_io": "target",
+            **attrs
+        }
         self.edges.append(edge)
 
     def to_dict(self):
@@ -42,6 +49,7 @@ class SimpleGraph:
             "multigraph": False,
             "graph": {},
             "nodes": nodes_list,
+            "edges": self.edges,
             "links": self.edges,
         }
 
@@ -58,495 +66,8 @@ def extract_json_from_markdown(text: str) -> str:
     return text
 
 
-def convert_to_type(val: str) -> Any:
-    """将字符串值转换为适当的数据类型"""
-    if val == "True":
-        return True
-    if val == "False":
-        return False
-    if val == "?":
-        return None
-    if val.endswith(" g"):
-        return float(val.split(" ")[0])
-    if val.endswith("mg"):
-        return float(val.split("mg")[0])
-    elif val.endswith("mmol"):
-        return float(val.split("mmol")[0]) / 1000
-    elif val.endswith("mol"):
-        return float(val.split("mol")[0])
-    elif val.endswith("ml"):
-        return float(val.split("ml")[0])
-    elif val.endswith("RPM"):
-        return float(val.split("RPM")[0])
-    elif val.endswith(" °C"):
-        return float(val.split(" ")[0])
-    elif val.endswith(" %"):
-        return float(val.split(" ")[0])
-    return val
 
 
-def refactor_data(data: List[Dict[str, Any]]) -> List[Dict[str, Any]]:
-    """统一的数据重构函数，根据操作类型自动选择模板"""
-    refactored_data = []
-
-    # 定义操作映射，包含生物实验和有机化学的所有操作
-    OPERATION_MAPPING = {
-        # 生物实验操作
-        "transfer_liquid": "SynBioFactory-liquid_handler.prcxi-transfer_liquid",
-        "transfer": "SynBioFactory-liquid_handler.biomek-transfer",
-        "incubation": "SynBioFactory-liquid_handler.biomek-incubation",
-        "move_labware": "SynBioFactory-liquid_handler.biomek-move_labware",
-        "oscillation": "SynBioFactory-liquid_handler.biomek-oscillation",
-        # 有机化学操作
-        "HeatChillToTemp": "SynBioFactory-workstation-HeatChillProtocol",
-        "StopHeatChill": "SynBioFactory-workstation-HeatChillStopProtocol",
-        "StartHeatChill": "SynBioFactory-workstation-HeatChillStartProtocol",
-        "HeatChill": "SynBioFactory-workstation-HeatChillProtocol",
-        "Dissolve": "SynBioFactory-workstation-DissolveProtocol",
-        "Transfer": "SynBioFactory-workstation-TransferProtocol",
-        "Evaporate": "SynBioFactory-workstation-EvaporateProtocol",
-        "Recrystallize": "SynBioFactory-workstation-RecrystallizeProtocol",
-        "Filter": "SynBioFactory-workstation-FilterProtocol",
-        "Dry": "SynBioFactory-workstation-DryProtocol",
-        "Add": "SynBioFactory-workstation-AddProtocol",
-    }
-
-    UNSUPPORTED_OPERATIONS = ["Purge", "Wait", "Stir", "ResetHandling"]
-
-    for step in data:
-        operation = step.get("action")
-        if not operation or operation in UNSUPPORTED_OPERATIONS:
-            continue
-
-        # 处理重复操作
-        if operation == "Repeat":
-            times = step.get("times", step.get("parameters", {}).get("times", 1))
-            sub_steps = step.get("steps", step.get("parameters", {}).get("steps", []))
-            for i in range(int(times)):
-                sub_data = refactor_data(sub_steps)
-                refactored_data.extend(sub_data)
-            continue
-
-        # 获取模板名称
-        template = OPERATION_MAPPING.get(operation)
-        if not template:
-            # 自动推断模板类型
-            if operation.lower() in ["transfer", "incubation", "move_labware", "oscillation"]:
-                template = f"SynBioFactory-liquid_handler.biomek-{operation}"
-            else:
-                template = f"SynBioFactory-workstation-{operation}Protocol"
-
-        # 创建步骤数据
-        step_data = {
-            "template": template,
-            "description": step.get("description", step.get("purpose", f"{operation} operation")),
-            "lab_node_type": "Device",
-            "parameters": step.get("parameters", step.get("action_args", {})),
-        }
-        refactored_data.append(step_data)
-
-    return refactored_data
-
-
-def build_protocol_graph(
-    labware_info: List[Dict[str, Any]], protocol_steps: List[Dict[str, Any]], workstation_name: str
-) -> SimpleGraph:
-    """统一的协议图构建函数，根据设备类型自动选择构建逻辑"""
-    G = SimpleGraph()
-    resource_last_writer = {}
-    LAB_NAME = "SynBioFactory"
-
-    protocol_steps = refactor_data(protocol_steps)
-
-    # 检查协议步骤中的模板来判断协议类型
-    has_biomek_template = any(
-        ("biomek" in step.get("template", "")) or ("prcxi" in step.get("template", ""))
-        for step in protocol_steps
-    )
-
-    if has_biomek_template:
-        # 生物实验协议图构建
-        for labware_id, labware in labware_info.items():
-            node_id = str(uuid.uuid4())
-
-            labware_attrs = labware.copy()
-            labware_id = labware_attrs.pop("id", labware_attrs.get("name", f"labware_{uuid.uuid4()}"))
-            labware_attrs["description"] = labware_id
-            labware_attrs["lab_node_type"] = (
-                "Reagent" if "Plate" in str(labware_id) else "Labware" if "Rack" in str(labware_id) else "Sample"
-            )
-            labware_attrs["device_id"] = workstation_name
-
-            G.add_node(node_id, template=f"{LAB_NAME}-host_node-create_resource", **labware_attrs)
-            resource_last_writer[labware_id] = f"{node_id}:labware"
-
-        # 处理协议步骤
-        prev_node = None
-        for i, step in enumerate(protocol_steps):
-            node_id = str(uuid.uuid4())
-            G.add_node(node_id, **step)
-
-            # 添加控制流边
-            if prev_node is not None:
-                G.add_edge(prev_node, node_id, source_port="ready", target_port="ready")
-            prev_node = node_id
-
-            # 处理物料流
-            params = step.get("parameters", {})
-            if "sources" in params and params["sources"] in resource_last_writer:
-                source_node, source_port = resource_last_writer[params["sources"]].split(":")
-                G.add_edge(source_node, node_id, source_port=source_port, target_port="labware")
-
-            if "targets" in params:
-                resource_last_writer[params["targets"]] = f"{node_id}:labware"
-
-        # 添加协议结束节点
-        end_id = str(uuid.uuid4())
-        G.add_node(end_id, template=f"{LAB_NAME}-liquid_handler.biomek-run_protocol")
-        if prev_node is not None:
-            G.add_edge(prev_node, end_id, source_port="ready", target_port="ready")
-
-    else:
-        # 有机化学协议图构建
-        WORKSTATION_ID = workstation_name
-
-        # 为所有labware创建资源节点
-        for item_id, item in labware_info.items():
-            # item_id = item.get("id") or item.get("name", f"item_{uuid.uuid4()}")
-            node_id = str(uuid.uuid4())
-
-            # 判断节点类型
-            if item.get("type") == "hardware" or "reactor" in str(item_id).lower():
-                if "reactor" not in str(item_id).lower():
-                    continue
-                lab_node_type = "Sample"
-                description = f"Prepare Reactor: {item_id}"
-                liquid_type = []
-                liquid_volume = []
-            else:
-                lab_node_type = "Reagent"
-                description = f"Add Reagent to Flask: {item_id}"
-                liquid_type = [item_id]
-                liquid_volume = [1e5]
-
-            G.add_node(
-                node_id,
-                template=f"{LAB_NAME}-host_node-create_resource",
-                description=description,
-                lab_node_type=lab_node_type,
-                res_id=item_id,
-                device_id=WORKSTATION_ID,
-                class_name="container",
-                parent=WORKSTATION_ID,
-                bind_locations={"x": 0.0, "y": 0.0, "z": 0.0},
-                liquid_input_slot=[-1],
-                liquid_type=liquid_type,
-                liquid_volume=liquid_volume,
-                slot_on_deck="",
-                role=item.get("role", ""),
-            )
-            resource_last_writer[item_id] = f"{node_id}:labware"
-
-        last_control_node_id = None
-
-        # 处理协议步骤
-        for step in protocol_steps:
-            node_id = str(uuid.uuid4())
-            G.add_node(node_id, **step)
-
-            # 控制流
-            if last_control_node_id is not None:
-                G.add_edge(last_control_node_id, node_id, source_port="ready", target_port="ready")
-            last_control_node_id = node_id
-
-            # 物料流
-            params = step.get("parameters", {})
-            input_resources = {
-                "Vessel": params.get("vessel"),
-                "ToVessel": params.get("to_vessel"),
-                "FromVessel": params.get("from_vessel"),
-                "reagent": params.get("reagent"),
-                "solvent": params.get("solvent"),
-                "compound": params.get("compound"),
-                "sources": params.get("sources"),
-                "targets": params.get("targets"),
-            }
-
-            for target_port, resource_name in input_resources.items():
-                if resource_name and resource_name in resource_last_writer:
-                    source_node, source_port = resource_last_writer[resource_name].split(":")
-                    G.add_edge(source_node, node_id, source_port=source_port, target_port=target_port)
-
-            output_resources = {
-                "VesselOut": params.get("vessel"),
-                "FromVesselOut": params.get("from_vessel"),
-                "ToVesselOut": params.get("to_vessel"),
-                "FiltrateOut": params.get("filtrate_vessel"),
-                "reagent": params.get("reagent"),
-                "solvent": params.get("solvent"),
-                "compound": params.get("compound"),
-                "sources_out": params.get("sources"),
-                "targets_out": params.get("targets"),
-            }
-
-            for source_port, resource_name in output_resources.items():
-                if resource_name:
-                    resource_last_writer[resource_name] = f"{node_id}:{source_port}"
-
-    return G
-
-
-def draw_protocol_graph(protocol_graph: SimpleGraph, output_path: str):
-    """
-    (辅助功能) 使用 networkx 和 matplotlib 绘制协议工作流图，用于可视化。
-    """
-    if not protocol_graph:
-        print("Cannot draw graph: Graph object is empty.")
-        return
-
-    G = nx.DiGraph()
-
-    for node_id, attrs in protocol_graph.nodes.items():
-        label = attrs.get("description", attrs.get("template", node_id[:8]))
-        G.add_node(node_id, label=label, **attrs)
-
-    for edge in protocol_graph.edges:
-        G.add_edge(edge["source"], edge["target"])
-
-    plt.figure(figsize=(20, 15))
-    try:
-        pos = nx.nx_agraph.graphviz_layout(G, prog="dot")
-    except Exception:
-        pos = nx.shell_layout(G)  # Fallback layout
-
-    node_labels = {node: data["label"] for node, data in G.nodes(data=True)}
-    nx.draw(
-        G,
-        pos,
-        with_labels=False,
-        node_size=2500,
-        node_color="skyblue",
-        node_shape="o",
-        edge_color="gray",
-        width=1.5,
-        arrowsize=15,
-    )
-    nx.draw_networkx_labels(G, pos, labels=node_labels, font_size=8, font_weight="bold")
-
-    plt.title("Chemical Protocol Workflow Graph", size=15)
-    plt.savefig(output_path, dpi=300, bbox_inches="tight")
-    plt.close()
-    print(f"  - Visualization saved to '{output_path}'")
-
-
-from networkx.drawing.nx_agraph import to_agraph
-import re
-
-COMPASS = {"n","e","s","w","ne","nw","se","sw","c"}
-
-def _is_compass(port: str) -> bool:
-    return isinstance(port, str) and port.lower() in COMPASS
-
-def draw_protocol_graph_with_ports(protocol_graph, output_path: str, rankdir: str = "LR"):
-    """
-    使用 Graphviz 端口语法绘制协议工作流图。
-    - 若边上的 source_port/target_port 是 compass（n/e/s/w/...），直接用 compass。
-    - 否则自动为节点创建 record 形状并定义命名端口 <portname>。
-    最终由 PyGraphviz 渲染并输出到 output_path（后缀决定格式，如 .png/.svg/.pdf）。
-    """
-    if not protocol_graph:
-        print("Cannot draw graph: Graph object is empty.")
-        return
-
-    # 1) 先用 networkx 搭建有向图，保留端口属性
-    G = nx.DiGraph()
-    for node_id, attrs in protocol_graph.nodes.items():
-        label = attrs.get("description", attrs.get("template", node_id[:8]))
-        # 保留一个干净的“中心标签”，用于放在 record 的中间槽
-        G.add_node(node_id, _core_label=str(label), **{k:v for k,v in attrs.items() if k not in ("label",)})
-
-    edges_data = []
-    in_ports_by_node  = {}  # 收集命名输入端口
-    out_ports_by_node = {}  # 收集命名输出端口
-
-    for edge in protocol_graph.edges:
-        u = edge["source"]
-        v = edge["target"]
-        sp = edge.get("source_port")
-        tp = edge.get("target_port")
-
-        # 记录到图里（保留原始端口信息）
-        G.add_edge(u, v, source_port=sp, target_port=tp)
-        edges_data.append((u, v, sp, tp))
-
-        # 如果不是 compass，就按“命名端口”先归类，等会儿给节点造 record
-        if sp and not _is_compass(sp):
-            out_ports_by_node.setdefault(u, set()).add(str(sp))
-        if tp and not _is_compass(tp):
-            in_ports_by_node.setdefault(v, set()).add(str(tp))
-
-    # 2) 转为 AGraph，使用 Graphviz 渲染
-    A = to_agraph(G)
-    A.graph_attr.update(rankdir=rankdir, splines="true", concentrate="false", fontsize="10")
-    A.node_attr.update(shape="box", style="rounded,filled", fillcolor="lightyellow", color="#999999", fontname="Helvetica")
-    A.edge_attr.update(arrowsize="0.8", color="#666666")
-
-    # 3) 为需要命名端口的节点设置 record 形状与 label
-    #    左列 = 输入端口；中间 = 核心标签；右列 = 输出端口
-    for n in A.nodes():
-        node = A.get_node(n)
-        core = G.nodes[n].get("_core_label", n)
-
-        in_ports  = sorted(in_ports_by_node.get(n, []))
-        out_ports = sorted(out_ports_by_node.get(n, []))
-
-        # 如果该节点涉及命名端口，则用 record；否则保留原 box
-        if in_ports or out_ports:
-            def port_fields(ports):
-                if not ports:
-                    return " "  # 必须留一个空槽占位
-                # 每个端口一个小格子，<p> name
-                return "|".join(f"<{re.sub(r'[^A-Za-z0-9_:.|-]', '_', p)}> {p}" for p in ports)
-
-            left  = port_fields(in_ports)
-            right = port_fields(out_ports)
-
-            # 三栏：左(入) | 中(节点名) | 右(出)
-            record_label = f"{{ {left} | {core} | {right} }}"
-            node.attr.update(shape="record", label=record_label)
-        else:
-            # 没有命名端口：普通盒子，显示核心标签
-            node.attr.update(label=str(core))
-
-    # 4) 给边设置 headport / tailport
-    #    - 若端口为 compass：直接用 compass（e.g., headport="e"）
-    #    - 若端口为命名端口：使用在 record 中定义的 <port> 名（同名即可）
-    for (u, v, sp, tp) in edges_data:
-        e = A.get_edge(u, v)
-
-        # Graphviz 属性：tail 是源，head 是目标
-        if sp:
-            if _is_compass(sp):
-                e.attr["tailport"] = sp.lower()
-            else:
-                # 与 record label 中 <port> 名一致；特殊字符已在 label 中做了清洗
-                e.attr["tailport"] = re.sub(r'[^A-Za-z0-9_:.|-]', '_', str(sp))
-
-        if tp:
-            if _is_compass(tp):
-                e.attr["headport"] = tp.lower()
-            else:
-                e.attr["headport"] = re.sub(r'[^A-Za-z0-9_:.|-]', '_', str(tp))
-
-        # 可选：若想让边更贴边缘，可设置 constraint/spline 等
-        # e.attr["arrowhead"] = "vee"
-
-    # 5) 输出
-    A.draw(output_path, prog="dot")
-    print(f"  - Port-aware workflow rendered to '{output_path}'")
-
-
-def flatten_xdl_procedure(procedure_elem: ET.Element) -> List[ET.Element]:
-    """展平嵌套的XDL程序结构"""
-    flattened_operations = []
-    TEMP_UNSUPPORTED_PROTOCOL = ["Purge", "Wait", "Stir", "ResetHandling"]
-
-    def extract_operations(element: ET.Element):
-        if element.tag not in ["Prep", "Reaction", "Workup", "Purification", "Procedure"]:
-            if element.tag not in TEMP_UNSUPPORTED_PROTOCOL:
-                flattened_operations.append(element)
-
-        for child in element:
-            extract_operations(child)
-
-    for child in procedure_elem:
-        extract_operations(child)
-
-    return flattened_operations
-
-
-def parse_xdl_content(xdl_content: str) -> tuple:
-    """解析XDL内容"""
-    try:
-        xdl_content_cleaned = "".join(c for c in xdl_content if c.isprintable())
-        root = ET.fromstring(xdl_content_cleaned)
-
-        synthesis_elem = root.find("Synthesis")
-        if synthesis_elem is None:
-            return None, None, None
-
-        # 解析硬件组件
-        hardware_elem = synthesis_elem.find("Hardware")
-        hardware = []
-        if hardware_elem is not None:
-            hardware = [{"id": c.get("id"), "type": c.get("type")} for c in hardware_elem.findall("Component")]
-
-        # 解析试剂
-        reagents_elem = synthesis_elem.find("Reagents")
-        reagents = []
-        if reagents_elem is not None:
-            reagents = [{"name": r.get("name"), "role": r.get("role", "")} for r in reagents_elem.findall("Reagent")]
-
-        # 解析程序
-        procedure_elem = synthesis_elem.find("Procedure")
-        if procedure_elem is None:
-            return None, None, None
-
-        flattened_operations = flatten_xdl_procedure(procedure_elem)
-        return hardware, reagents, flattened_operations
-
-    except ET.ParseError as e:
-        raise ValueError(f"Invalid XDL format: {e}")
-
-
-def convert_xdl_to_dict(xdl_content: str) -> Dict[str, Any]:
-    """
-    将XDL XML格式转换为标准的字典格式
-
-    Args:
-        xdl_content: XDL XML内容
-
-    Returns:
-        转换结果，包含步骤和器材信息
-    """
-    try:
-        hardware, reagents, flattened_operations = parse_xdl_content(xdl_content)
-        if hardware is None:
-            return {"error": "Failed to parse XDL content", "success": False}
-
-        # 将XDL元素转换为字典格式
-        steps_data = []
-        for elem in flattened_operations:
-            # 转换参数类型
-            parameters = {}
-            for key, val in elem.attrib.items():
-                converted_val = convert_to_type(val)
-                if converted_val is not None:
-                    parameters[key] = converted_val
-
-            step_dict = {
-                "operation": elem.tag,
-                "parameters": parameters,
-                "description": elem.get("purpose", f"Operation: {elem.tag}"),
-            }
-            steps_data.append(step_dict)
-
-        # 合并硬件和试剂为统一的labware_info格式
-        labware_data = []
-        labware_data.extend({"id": hw["id"], "type": "hardware", **hw} for hw in hardware)
-        labware_data.extend({"name": reagent["name"], "type": "reagent", **reagent} for reagent in reagents)
-
-        return {
-            "success": True,
-            "steps": steps_data,
-            "labware": labware_data,
-            "message": f"Successfully converted XDL to dict format. Found {len(steps_data)} steps and {len(labware_data)} labware items.",
-        }
-
-    except Exception as e:
-        error_msg = f"XDL conversion failed: {str(e)}"
-        logger.error(error_msg)
-        return {"error": error_msg, "success": False}
 
 
 def create_workflow(

setup.py

@@ -4,7 +4,7 @@ package_name = 'unilabos'
 
 setup(
     name=package_name,
-    version='0.10.14',
+    version='0.10.15',
     packages=find_packages(),
     include_package_data=True,
     install_requires=['setuptools'],

tests/resources/test_resourcetreeset.py

@@ -2,9 +2,8 @@ import pytest
 import json
 import os
 
-from pylabrobot.resources import Resource as ResourcePLR
 from unilabos.resources.graphio import resource_bioyond_to_plr
-from unilabos.ros.nodes.resource_tracker import ResourceTreeSet
+from unilabos.resources.resource_tracker import ResourceTreeSet
 from unilabos.registry.registry import lab_registry
 
 from unilabos.resources.bioyond.decks import BIOYOND_PolymerReactionStation_Deck

unilabos/__init__.py

@@ -1 +1 @@
-__version__ = "0.10.14"
+__version__ = "0.10.15"

unilabos/app/backend.py

@@ -1,6 +1,6 @@
 import threading
 
-from unilabos.ros.nodes.resource_tracker import ResourceTreeSet
+from unilabos.resources.resource_tracker import ResourceTreeSet
 from unilabos.utils import logger
 
 

unilabos/app/main.py

@@ -19,6 +19,12 @@ if unilabos_dir not in sys.path:
 
 from unilabos.utils.banner_print import print_status, print_unilab_banner
 from unilabos.config.config import load_config, BasicConfig, HTTPConfig
+from unilabos.app.utils import cleanup_for_restart
+
+# Global restart flags (used by ws_client and web/server)
+_restart_requested: bool = False
+_restart_reason: str = ""
+
 
 def load_config_from_file(config_path):
     if config_path is None:
@@ -41,7 +47,7 @@ def convert_argv_dashes_to_underscores(args: argparse.ArgumentParser):
     for i, arg in enumerate(sys.argv):
         for option_string in option_strings:
             if arg.startswith(option_string):
-                new_arg = arg[:2] + arg[2:len(option_string)].replace("-", "_") + arg[len(option_string):]
+                new_arg = arg[:2] + arg[2 : len(option_string)].replace("-", "_") + arg[len(option_string) :]
                 sys.argv[i] = new_arg
                 break
 
@@ -49,6 +55,8 @@ def convert_argv_dashes_to_underscores(args: argparse.ArgumentParser):
 def parse_args():
     """解析命令行参数"""
     parser = argparse.ArgumentParser(description="Start Uni-Lab Edge server.")
+    subparsers = parser.add_subparsers(title="Valid subcommands", dest="command")
+
     parser.add_argument("-g", "--graph", help="Physical setup graph file path.")
     parser.add_argument("-c", "--controllers", default=None, help="Controllers config file path.")
     parser.add_argument(
@@ -153,6 +161,44 @@ def parse_args():
         default=False,
         help="Complete registry information",
     )
+    parser.add_argument(
+        "--no_update_feedback",
+        action="store_true",
+        help="Disable sending update feedback to server",
+    )
+    # workflow upload subcommand
+    workflow_parser = subparsers.add_parser(
+        "workflow_upload",
+        aliases=["wf"],
+        help="Upload workflow from xdl/json/python files",
+    )
+    workflow_parser.add_argument(
+        "-f",
+        "--workflow_file",
+        type=str,
+        required=True,
+        help="Path to the workflow file (JSON format)",
+    )
+    workflow_parser.add_argument(
+        "-n",
+        "--workflow_name",
+        type=str,
+        default=None,
+        help="Workflow name, if not provided will use the name from file or filename",
+    )
+    workflow_parser.add_argument(
+        "--tags",
+        type=str,
+        nargs="*",
+        default=[],
+        help="Tags for the workflow (space-separated)",
+    )
+    workflow_parser.add_argument(
+        "--published",
+        action="store_true",
+        default=False,
+        help="Whether to publish the workflow (default: False)",
+    )
     return parser
 
 
@@ -168,7 +214,6 @@ def main():
     if not args_dict.get("skip_env_check", False):
         from unilabos.utils.environment_check import check_environment
 
-        print_status("正在进行环境依赖检查...", "info")
         if not check_environment(auto_install=True):
             print_status("环境检查失败，程序退出", "error")
             os._exit(1)
@@ -241,9 +286,12 @@ def main():
     if args_dict.get("sk", ""):
         BasicConfig.sk = args_dict.get("sk", "")
         print_status("传入了sk参数，优先采用传入参数！", "info")
+    BasicConfig.working_dir = working_dir
+
+    workflow_upload = args_dict.get("command") in ("workflow_upload", "wf")
 
     # 使用远程资源启动
-    if args_dict["use_remote_resource"]:
+    if not workflow_upload and args_dict["use_remote_resource"]:
         print_status("使用远程资源启动", "info")
         from unilabos.app.web import http_client
 
@@ -256,10 +304,10 @@ def main():
 
     BasicConfig.port = args_dict["port"] if args_dict["port"] else BasicConfig.port
     BasicConfig.disable_browser = args_dict["disable_browser"] or BasicConfig.disable_browser
-    BasicConfig.working_dir = working_dir
     BasicConfig.is_host_mode = not args_dict.get("is_slave", False)
     BasicConfig.slave_no_host = args_dict.get("slave_no_host", False)
     BasicConfig.upload_registry = args_dict.get("upload_registry", False)
+    BasicConfig.no_update_feedback = args_dict.get("no_update_feedback", False)
     BasicConfig.communication_protocol = "websocket"
     machine_name = os.popen("hostname").read().strip()
     machine_name = "".join([c if c.isalnum() or c == "_" else "_" for c in machine_name])
@@ -278,16 +326,38 @@ def main():
     from unilabos.app.web import start_server
     from unilabos.app.register import register_devices_and_resources
     from unilabos.resources.graphio import modify_to_backend_format
-    from unilabos.ros.nodes.resource_tracker import ResourceTreeSet, ResourceDict
+    from unilabos.resources.resource_tracker import ResourceTreeSet, ResourceDict
 
     # 显示启动横幅
     print_unilab_banner(args_dict)
 
     # 注册表
     lab_registry = build_registry(
-        args_dict["registry_path"], args_dict.get("complete_registry", False), args_dict["upload_registry"]
+        args_dict["registry_path"], args_dict.get("complete_registry", False), BasicConfig.upload_registry
     )
 
+    if BasicConfig.upload_registry:
+        # 设备注册到服务端 - 需要 ak 和 sk
+        if BasicConfig.ak and BasicConfig.sk:
+            print_status("开始注册设备到服务端...", "info")
+            try:
+                register_devices_and_resources(lab_registry)
+                print_status("设备注册完成", "info")
+            except Exception as e:
+                print_status(f"设备注册失败: {e}", "error")
+        else:
+            print_status("未提供 ak 和 sk，跳过设备注册", "info")
+    else:
+        print_status("本次启动注册表不报送云端，如果您需要联网调试，请在启动命令增加--upload_registry", "warning")
+
+    # 处理 workflow_upload 子命令
+    if workflow_upload:
+        from unilabos.workflow.wf_utils import handle_workflow_upload_command
+
+        handle_workflow_upload_command(args_dict)
+        print_status("工作流上传完成，程序退出", "info")
+        os._exit(0)
+
     if not BasicConfig.ak or not BasicConfig.sk:
         print_status("后续运行必须拥有一个实验室，请前往 https://uni-lab.bohrium.com 注册实验室！", "warning")
         os._exit(1)
@@ -368,20 +438,6 @@ def main():
     args_dict["devices_config"] = resource_tree_set
     args_dict["graph"] = graph_res.physical_setup_graph
 
-    if BasicConfig.upload_registry:
-        # 设备注册到服务端 - 需要 ak 和 sk
-        if BasicConfig.ak and BasicConfig.sk:
-            print_status("开始注册设备到服务端...", "info")
-            try:
-                register_devices_and_resources(lab_registry)
-                print_status("设备注册完成", "info")
-            except Exception as e:
-                print_status(f"设备注册失败: {e}", "error")
-        else:
-            print_status("未提供 ak 和 sk，跳过设备注册", "info")
-    else:
-        print_status("本次启动注册表不报送云端，如果您需要联网调试，请在启动命令增加--upload_registry", "warning")
-
     if args_dict["controllers"] is not None:
         args_dict["controllers_config"] = yaml.safe_load(open(args_dict["controllers"], encoding="utf-8"))
     else:
@@ -396,6 +452,7 @@ def main():
         comm_client = get_communication_client()
         if "websocket" in args_dict["app_bridges"]:
             args_dict["bridges"].append(comm_client)
+
             def _exit(signum, frame):
                 comm_client.stop()
                 sys.exit(0)
@@ -437,16 +494,13 @@ def main():
                 resource_visualization.start()
             except OSError as e:
                 if "AMENT_PREFIX_PATH" in str(e):
-                    print_status(
-                        f"ROS 2环境未正确设置，跳过3D可视化启动。错误详情: {e}",
-                        "warning"
-                    )
+                    print_status(f"ROS 2环境未正确设置，跳过3D可视化启动。错误详情: {e}", "warning")
                     print_status(
                         "建议解决方案：\n"
                         "1. 激活Conda环境: conda activate unilab\n"
                         "2. 或使用 --backend simple 参数\n"
                         "3. 或使用 --visual disable 参数禁用可视化",
-                        "info"
+                        "info",
                     )
                 else:
                     raise
@@ -454,13 +508,19 @@ def main():
                 time.sleep(1)
         else:
             start_backend(**args_dict)
-            start_server(
+            restart_requested = start_server(
                 open_browser=not args_dict["disable_browser"],
                 port=BasicConfig.port,
             )
+            if restart_requested:
+                print_status("[Main] Restart requested, cleaning up...", "info")
+                cleanup_for_restart()
+                return
     else:
         start_backend(**args_dict)
-        start_server(
+
+        # 启动服务器（默认支持WebSocket触发重启）
+        restart_requested = start_server(
             open_browser=not args_dict["disable_browser"],
             port=BasicConfig.port,
         )

unilabos/app/utils.py

@@ -0,0 +1,144 @@
+"""
+UniLabOS 应用工具函数
+
+提供清理、重启等工具函数
+"""
+
+import gc
+import os
+import threading
+import time
+
+from unilabos.utils.banner_print import print_status
+
+
+def cleanup_for_restart() -> bool:
+    """
+    Clean up all resources for restart without exiting the process.
+
+    This function prepares the system for re-initialization by:
+    1. Stopping all communication clients
+    2. Destroying ROS nodes
+    3. Resetting singletons
+    4. Waiting for threads to finish
+
+    Returns:
+        bool: True if cleanup was successful, False otherwise
+    """
+    print_status("[Restart] Starting cleanup for restart...", "info")
+
+    # Step 1: Stop WebSocket communication client
+    print_status("[Restart] Step 1: Stopping WebSocket client...", "info")
+    try:
+        from unilabos.app.communication import get_communication_client
+
+        comm_client = get_communication_client()
+        if comm_client is not None:
+            comm_client.stop()
+            print_status("[Restart] WebSocket client stopped", "info")
+    except Exception as e:
+        print_status(f"[Restart] Error stopping WebSocket: {e}", "warning")
+
+    # Step 2: Get HostNode and cleanup ROS
+    print_status("[Restart] Step 2: Cleaning up ROS nodes...", "info")
+    try:
+        from unilabos.ros.nodes.presets.host_node import HostNode
+        import rclpy
+        from rclpy.timer import Timer
+
+        host_instance = HostNode.get_instance(timeout=5)
+        if host_instance is not None:
+            print_status(f"[Restart] Found HostNode: {host_instance.device_id}", "info")
+
+            # Gracefully shutdown background threads
+            print_status("[Restart] Shutting down background threads...", "info")
+            HostNode.shutdown_background_threads(timeout=5.0)
+            print_status("[Restart] Background threads shutdown complete", "info")
+
+            # Stop discovery timer
+            if hasattr(host_instance, "_discovery_timer") and isinstance(host_instance._discovery_timer, Timer):
+                host_instance._discovery_timer.cancel()
+                print_status("[Restart] Discovery timer cancelled", "info")
+
+            # Destroy device nodes
+            device_count = len(host_instance.devices_instances)
+            print_status(f"[Restart] Destroying {device_count} device instances...", "info")
+            for device_id, device_node in list(host_instance.devices_instances.items()):
+                try:
+                    if hasattr(device_node, "ros_node_instance") and device_node.ros_node_instance is not None:
+                        device_node.ros_node_instance.destroy_node()
+                        print_status(f"[Restart] Device {device_id} destroyed", "info")
+                except Exception as e:
+                    print_status(f"[Restart] Error destroying device {device_id}: {e}", "warning")
+
+            # Clear devices instances
+            host_instance.devices_instances.clear()
+            host_instance.devices_names.clear()
+
+            # Destroy host node
+            try:
+                host_instance.destroy_node()
+                print_status("[Restart] HostNode destroyed", "info")
+            except Exception as e:
+                print_status(f"[Restart] Error destroying HostNode: {e}", "warning")
+
+            # Reset HostNode state
+            HostNode.reset_state()
+            print_status("[Restart] HostNode state reset", "info")
+
+        # Shutdown executor first (to stop executor.spin() gracefully)
+        if hasattr(rclpy, "__executor") and rclpy.__executor is not None:
+            try:
+                rclpy.__executor.shutdown()
+                rclpy.__executor = None  # Clear for restart
+                print_status("[Restart] ROS executor shutdown complete", "info")
+            except Exception as e:
+                print_status(f"[Restart] Error shutting down executor: {e}", "warning")
+
+        # Shutdown rclpy
+        if rclpy.ok():
+            rclpy.shutdown()
+            print_status("[Restart] rclpy shutdown complete", "info")
+
+    except ImportError as e:
+        print_status(f"[Restart] ROS modules not available: {e}", "warning")
+    except Exception as e:
+        print_status(f"[Restart] Error in ROS cleanup: {e}", "warning")
+        return False
+
+    # Step 3: Reset communication client singleton
+    print_status("[Restart] Step 3: Resetting singletons...", "info")
+    try:
+        from unilabos.app import communication
+
+        if hasattr(communication, "_communication_client"):
+            communication._communication_client = None
+            print_status("[Restart] Communication client singleton reset", "info")
+    except Exception as e:
+        print_status(f"[Restart] Error resetting communication singleton: {e}", "warning")
+
+    # Step 4: Wait for threads to finish
+    print_status("[Restart] Step 4: Waiting for threads to finish...", "info")
+    time.sleep(3)  # Give threads time to finish
+
+    # Check remaining threads
+    remaining_threads = []
+    for t in threading.enumerate():
+        if t.name != "MainThread" and t.is_alive():
+            remaining_threads.append(t.name)
+
+    if remaining_threads:
+        print_status(
+            f"[Restart] Warning: {len(remaining_threads)} threads still running: {remaining_threads}", "warning"
+        )
+    else:
+        print_status("[Restart] All threads stopped", "info")
+
+    # Step 5: Force garbage collection
+    print_status("[Restart] Step 5: Running garbage collection...", "info")
+    gc.collect()
+    gc.collect()  # Run twice for weak references
+    print_status("[Restart] Garbage collection complete", "info")
+
+    print_status("[Restart] Cleanup complete. Ready for re-initialization.", "info")
+    return True

unilabos/app/web/client.py

@@ -6,12 +6,10 @@ HTTP客户端模块
 
 import json
 import os
-import time
-from threading import Thread
 from typing import List, Dict, Any, Optional
 
 import requests
-from unilabos.ros.nodes.resource_tracker import ResourceTreeSet
+from unilabos.resources.resource_tracker import ResourceTreeSet
 from unilabos.utils.log import info
 from unilabos.config.config import HTTPConfig, BasicConfig
 from unilabos.utils import logger
@@ -76,7 +74,8 @@ class HTTPClient:
             Dict[str, str]: 旧UUID到新UUID的映射关系 {old_uuid: new_uuid}
         """
         with open(os.path.join(BasicConfig.working_dir, "req_resource_tree_add.json"), "w", encoding="utf-8") as f:
-            f.write(json.dumps({"nodes": [x for xs in resources.dump() for x in xs], "mount_uuid": mount_uuid}, indent=4))
+            payload = {"nodes": [x for xs in resources.dump() for x in xs], "mount_uuid": mount_uuid}
+            f.write(json.dumps(payload, indent=4))
         # 从序列化数据中提取所有节点的UUID（保存旧UUID）
         old_uuids = {n.res_content.uuid: n for n in resources.all_nodes}
         if not self.initialized or first_add:
@@ -335,6 +334,67 @@ class HTTPClient:
                 logger.error(f"响应内容: {response.text}")
         return None
 
+    def workflow_import(
+        self,
+        name: str,
+        workflow_uuid: str,
+        workflow_name: str,
+        nodes: List[Dict[str, Any]],
+        edges: List[Dict[str, Any]],
+        tags: Optional[List[str]] = None,
+        published: bool = False,
+    ) -> Dict[str, Any]:
+        """
+        导入工作流到服务器
+
+        Args:
+            name: 工作流名称（顶层）
+            workflow_uuid: 工作流UUID
+            workflow_name: 工作流名称（data内部）
+            nodes: 工作流节点列表
+            edges: 工作流边列表
+            tags: 工作流标签列表，默认为空列表
+            published: 是否发布工作流，默认为False
+
+        Returns:
+            Dict: API响应数据，包含 code 和 data (uuid, name)
+        """
+        # target_lab_uuid 暂时使用默认值，后续由后端根据 ak/sk 获取
+        payload = {
+            "target_lab_uuid": "28c38bb0-63f6-4352-b0d8-b5b8eb1766d5",
+            "name": name,
+            "data": {
+                "workflow_uuid": workflow_uuid,
+                "workflow_name": workflow_name,
+                "nodes": nodes,
+                "edges": edges,
+                "tags": tags if tags is not None else [],
+                "published": published,
+            },
+        }
+        # 保存请求到文件
+        with open(os.path.join(BasicConfig.working_dir, "req_workflow_upload.json"), "w", encoding="utf-8") as f:
+            f.write(json.dumps(payload, indent=4, ensure_ascii=False))
+
+        response = requests.post(
+            f"{self.remote_addr}/lab/workflow/owner/import",
+            json=payload,
+            headers={"Authorization": f"Lab {self.auth}"},
+            timeout=60,
+        )
+        # 保存响应到文件
+        with open(os.path.join(BasicConfig.working_dir, "res_workflow_upload.json"), "w", encoding="utf-8") as f:
+            f.write(f"{response.status_code}" + "\n" + response.text)
+
+        if response.status_code == 200:
+            res = response.json()
+            if "code" in res and res["code"] != 0:
+                logger.error(f"导入工作流失败: {response.text}")
+            return res
+        else:
+            logger.error(f"导入工作流失败: {response.status_code}, {response.text}")
+            return {"code": response.status_code, "message": response.text}
+
 
 # 创建默认客户端实例
 http_client = HTTPClient()

unilabos/app/web/server.py

@@ -6,7 +6,6 @@ Web服务器模块
 
 import webbrowser
 
-import uvicorn
 from fastapi import FastAPI, Request
 from fastapi.middleware.cors import CORSMiddleware
 from starlette.responses import Response
@@ -96,7 +95,7 @@ def setup_server() -> FastAPI:
     return app
 
 
-def start_server(host: str = "0.0.0.0", port: int = 8002, open_browser: bool = True) -> None:
+def start_server(host: str = "0.0.0.0", port: int = 8002, open_browser: bool = True) -> bool:
     """
     启动服务器
 
@@ -104,7 +103,14 @@ def start_server(host: str = "0.0.0.0", port: int = 8002, open_browser: bool = T
         host: 服务器主机
         port: 服务器端口
         open_browser: 是否自动打开浏览器
+
+    Returns:
+        bool: True if restart was requested, False otherwise
     """
+    import threading
+    import time
+    from uvicorn import Config, Server
+
     # 设置服务器
     setup_server()
 
@@ -123,7 +129,37 @@ def start_server(host: str = "0.0.0.0", port: int = 8002, open_browser: bool = T
 
     # 启动服务器
     info(f"[Web] 启动FastAPI服务器: {host}:{port}")
-    uvicorn.run(app, host=host, port=port, log_config=log_config)
+
+    # 使用支持重启的模式
+    config = Config(app=app, host=host, port=port, log_config=log_config)
+    server = Server(config)
+
+    # 启动服务器线程
+    server_thread = threading.Thread(target=server.run, daemon=True, name="uvicorn_server")
+    server_thread.start()
+
+    info("[Web] Server started, monitoring for restart requests...")
+
+    # 监控重启标志
+    import unilabos.app.main as main_module
+
+    while server_thread.is_alive():
+        if hasattr(main_module, "_restart_requested") and main_module._restart_requested:
+            info(
+                f"[Web] Restart requested via WebSocket, reason: {getattr(main_module, '_restart_reason', 'unknown')}"
+            )
+            main_module._restart_requested = False
+
+            # 停止服务器
+            server.should_exit = True
+            server_thread.join(timeout=5)
+
+            info("[Web] Server stopped, ready for restart")
+            return True
+
+        time.sleep(1)
+
+    return False
 
 
 # 当脚本直接运行时启动服务器

unilabos/app/ws_client.py

@@ -359,7 +359,7 @@ class MessageProcessor:
         self.device_manager = device_manager
         self.queue_processor = None  # 延迟设置
         self.websocket_client = None  # 延迟设置
-        self.session_id = ""
+        self.session_id = str(uuid.uuid4())[:6]  # 产生一个随机的session_id
 
         # WebSocket连接
         self.websocket = None
@@ -438,7 +438,7 @@ class MessageProcessor:
                     self.connected = True
                     self.reconnect_count = 0
 
-                    logger.info(f"[MessageProcessor] Connected to {self.websocket_url}")
+                    logger.trace(f"[MessageProcessor] Connected to {self.websocket_url}")
 
                     # 启动发送协程
                     send_task = asyncio.create_task(self._send_handler())
@@ -488,7 +488,16 @@ class MessageProcessor:
             async for message in self.websocket:
                 try:
                     data = json.loads(message)
-                    await self._process_message(data)
+                    message_type = data.get("action", "")
+                    message_data = data.get("data")
+                    if self.session_id and self.session_id == data.get("edge_session"):
+                        await self._process_message(message_type, message_data)
+                    else:
+                        if message_type.endswith("_material"):
+                            logger.trace(f"[MessageProcessor] 收到一条归属 {data.get('edge_session')} 的旧消息：{data}")
+                            logger.debug(f"[MessageProcessor] 跳过了一条归属 {data.get('edge_session')} 的旧消息: {data.get('action')}")
+                        else:
+                            await self._process_message(message_type, message_data)
                 except json.JSONDecodeError:
                     logger.error(f"[MessageProcessor] Invalid JSON received: {message}")
                 except Exception as e:
@@ -503,7 +512,7 @@ class MessageProcessor:
 
     async def _send_handler(self):
         """处理发送队列中的消息"""
-        logger.debug("[MessageProcessor] Send handler started")
+        logger.trace("[MessageProcessor] Send handler started")
 
         try:
             while self.connected and self.websocket:
@@ -554,11 +563,8 @@ class MessageProcessor:
         finally:
             logger.debug("[MessageProcessor] Send handler stopped")
 
-    async def _process_message(self, data: Dict[str, Any]):
+    async def _process_message(self, message_type: str, message_data: Dict[str, Any]):
         """处理收到的消息"""
-        message_type = data.get("action", "")
-        message_data = data.get("data")
-
         logger.debug(f"[MessageProcessor] Processing message: {message_type}")
 
         try:
@@ -571,16 +577,19 @@ class MessageProcessor:
             elif message_type == "cancel_action" or message_type == "cancel_task":
                 await self._handle_cancel_action(message_data)
             elif message_type == "add_material":
+                # noinspection PyTypeChecker
                 await self._handle_resource_tree_update(message_data, "add")
             elif message_type == "update_material":
+                # noinspection PyTypeChecker
                 await self._handle_resource_tree_update(message_data, "update")
             elif message_type == "remove_material":
+                # noinspection PyTypeChecker
                 await self._handle_resource_tree_update(message_data, "remove")
-            elif message_type == "session_id":
-                self.session_id = message_data.get("session_id")
-                logger.info(f"[MessageProcessor] Session ID: {self.session_id}")
-            elif message_type == "request_reload":
-                await self._handle_request_reload(message_data)
+            # elif message_type == "session_id":
+            #     self.session_id = message_data.get("session_id")
+            #     logger.info(f"[MessageProcessor] Session ID: {self.session_id}")
+            elif message_type == "request_restart":
+                await self._handle_request_restart(message_data)
             else:
                 logger.debug(f"[MessageProcessor] Unknown message type: {message_type}")
 
@@ -839,7 +848,7 @@ class MessageProcessor:
                     device_action_groups[key_add].append(item["uuid"])
 
                     logger.info(
-                        f"[MessageProcessor] Resource migrated: {item['uuid'][:8]} from {device_old_id} to {device_id}"
+                        f"[资源同步] 跨站Transfer: {item['uuid'][:8]} from {device_old_id} to {device_id}"
                     )
                 else:
                     # 正常update
@@ -854,11 +863,11 @@ class MessageProcessor:
                     device_action_groups[key] = []
                 device_action_groups[key].append(item["uuid"])
 
-        logger.info(f"触发物料更新 {action} 分组数量: {len(device_action_groups)}, 总数量: {len(resource_uuid_list)}")
+        logger.trace(f"[资源同步] 动作 {action} 分组数量: {len(device_action_groups)}, 总数量: {len(resource_uuid_list)}")
 
         # 为每个(device_id, action)创建独立的更新线程
         for (device_id, actual_action), items in device_action_groups.items():
-            logger.info(f"设备 {device_id} 物料更新 {actual_action} 数量: {len(items)}")
+            logger.trace(f"[资源同步] {device_id} 物料动作 {actual_action} 数量: {len(items)}")
 
             def _notify_resource_tree(dev_id, act, item_list):
                 try:
@@ -890,19 +899,48 @@ class MessageProcessor:
             )
             thread.start()
 
-    async def _handle_request_reload(self, data: Dict[str, Any]):
+    async def _handle_request_restart(self, data: Dict[str, Any]):
         """
-        处理重载请求
-        
-        当LabGo发送request_reload时，重新发送设备注册信息
+        处理重启请求
+
+        当LabGo发送request_restart时，执行清理并触发重启
         """
         reason = data.get("reason", "unknown")
-        logger.info(f"[MessageProcessor] Received reload request, reason: {reason}")
-        
-        # 重新发送host_node_ready信息
+        delay = data.get("delay", 2)  # 默认延迟2秒
+        logger.info(f"[MessageProcessor] Received restart request, reason: {reason}, delay: {delay}s")
+
+        # 发送确认消息
         if self.websocket_client:
-            self.websocket_client.publish_host_ready()
-            logger.info("[MessageProcessor] Re-sent host_node_ready after reload request")
+            await self.websocket_client.send_message({
+                "action": "restart_acknowledged",
+                "data": {"reason": reason, "delay": delay}
+            })
+
+        # 设置全局重启标志
+        import unilabos.app.main as main_module
+        main_module._restart_requested = True
+        main_module._restart_reason = reason
+
+        # 延迟后执行清理
+        await asyncio.sleep(delay)
+
+        # 在新线程中执行清理，避免阻塞当前事件循环
+        def do_cleanup():
+            import time
+            time.sleep(0.5)  # 给当前消息处理完成的时间
+            logger.info(f"[MessageProcessor] Starting cleanup for restart, reason: {reason}")
+            try:
+                from unilabos.app.utils import cleanup_for_restart
+                if cleanup_for_restart():
+                    logger.info("[MessageProcessor] Cleanup successful, main() will restart")
+                else:
+                    logger.error("[MessageProcessor] Cleanup failed")
+            except Exception as e:
+                logger.error(f"[MessageProcessor] Error during cleanup: {e}")
+
+        cleanup_thread = threading.Thread(target=do_cleanup, name="RestartCleanupThread", daemon=True)
+        cleanup_thread.start()
+        logger.info(f"[MessageProcessor] Restart cleanup scheduled")
 
     async def _send_action_state_response(
         self, device_id: str, action_name: str, task_id: str, job_id: str, typ: str, free: bool, need_more: int
@@ -981,7 +1019,7 @@ class QueueProcessor:
 
     def _run(self):
         """运行队列处理主循环"""
-        logger.debug("[QueueProcessor] Queue processor started")
+        logger.trace("[QueueProcessor] Queue processor started")
 
         while self.is_running:
             try:
@@ -1191,7 +1229,6 @@ class WebSocketClient(BaseCommunicationClient):
         else:
             url = f"{scheme}://{parsed.netloc}/api/v1/ws/schedule"
 
-        logger.debug(f"[WebSocketClient] URL: {url}")
         return url
 
     def start(self) -> None:
@@ -1204,13 +1241,11 @@ class WebSocketClient(BaseCommunicationClient):
             logger.error("[WebSocketClient] WebSocket URL not configured")
             return
 
-        logger.info(f"[WebSocketClient] Starting connection to {self.websocket_url}")
-
         # 启动两个核心线程
         self.message_processor.start()
         self.queue_processor.start()
 
-        logger.info("[WebSocketClient] All threads started")
+        logger.trace("[WebSocketClient] All threads started")
 
     def stop(self) -> None:
         """停止WebSocket客户端"""
@@ -1340,7 +1375,7 @@ class WebSocketClient(BaseCommunicationClient):
         # 收集设备信息
         devices = []
         machine_name = BasicConfig.machine_name
-        
+
         try:
             host_node = HostNode.get_instance(0)
             if host_node:
@@ -1348,7 +1383,7 @@ class WebSocketClient(BaseCommunicationClient):
                 for device_id, namespace in host_node.devices_names.items():
                     device_key = f"{namespace}/{device_id}" if namespace.startswith("/") else f"/{namespace}/{device_id}"
                     is_online = device_key in host_node._online_devices
-                    
+
                     # 获取设备的动作信息
                     actions = {}
                     for action_id, client in host_node._action_clients.items():
@@ -1359,7 +1394,7 @@ class WebSocketClient(BaseCommunicationClient):
                                 "action_path": action_id,
                                 "action_type": str(type(client).__name__),
                             }
-                    
+
                     devices.append({
                         "device_id": device_id,
                         "namespace": namespace,
@@ -1368,7 +1403,7 @@ class WebSocketClient(BaseCommunicationClient):
                         "machine_name": host_node.device_machine_names.get(device_id, machine_name),
                         "actions": actions,
                     })
-                
+
                 logger.info(f"[WebSocketClient] Collected {len(devices)} devices for host_ready")
         except Exception as e:
             logger.warning(f"[WebSocketClient] Error collecting device info: {e}")

unilabos/config/config.py

@@ -16,12 +16,14 @@ class BasicConfig:
     upload_registry = False
     machine_name = "undefined"
     vis_2d_enable = False
+    no_update_feedback = False
     enable_resource_load = True
     communication_protocol = "websocket"
     startup_json_path = None  # 填写绝对路径
     disable_browser = False  # 禁止浏览器自动打开
     port = 8002  # 本地HTTP服务
-    log_level: Literal['TRACE', 'DEBUG', 'INFO', 'WARNING', 'ERROR', 'CRITICAL'] = "DEBUG"  # 'TRACE', 'DEBUG', 'INFO', 'WARNING', 'ERROR', 'CRITICAL'
+    # 'TRACE', 'DEBUG', 'INFO', 'WARNING', 'ERROR', 'CRITICAL'
+    log_level: Literal["TRACE", "DEBUG", "INFO", "WARNING", "ERROR", "CRITICAL"] = "DEBUG"
 
     @classmethod
     def auth_secret(cls):
@@ -65,13 +67,14 @@ def _update_config_from_module(module):
                     if not attr.startswith("_"):
                         setattr(obj, attr, getattr(getattr(module, name), attr))
 
+
 def _update_config_from_env():
     prefix = "UNILABOS_"
     for env_key, env_value in os.environ.items():
         if not env_key.startswith(prefix):
             continue
         try:
-            key_path = env_key[len(prefix):]  # Remove UNILAB_ prefix
+            key_path = env_key[len(prefix) :]  # Remove UNILAB_ prefix
             class_field = key_path.upper().split("_", 1)
             if len(class_field) != 2:
                 logger.warning(f"[ENV] 环境变量格式不正确：{env_key}")

unilabos/device_comms/coin_cell_assembly_workstation.py

@@ -6,7 +6,7 @@ Coin Cell Assembly Workstation
 """
 from typing import Dict, Any, List, Optional, Union
 
-from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker
+from unilabos.resources.resource_tracker import DeviceNodeResourceTracker
 from unilabos.device_comms.workstation_base import WorkstationBase, WorkflowInfo
 from unilabos.device_comms.workstation_communication import (
     WorkstationCommunicationBase, CommunicationConfig, CommunicationProtocol, CoinCellCommunication
@@ -61,7 +61,7 @@ class CoinCellAssemblyWorkstation(WorkstationBase):
         
         # 创建资源跟踪器（如果没有提供）
         if resource_tracker is None:
-            from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker
+            from unilabos.resources.resource_tracker import DeviceNodeResourceTracker
             resource_tracker = DeviceNodeResourceTracker()
         
         # 初始化基类

unilabos/device_comms/opcua_client/node/uniopcua.py

@@ -43,7 +43,7 @@ class Base(ABC):
         self._type = typ
         self._data_type = data_type
         self._node: Optional[Node] = None
-        
+
     def _get_node(self) -> Node:
         if self._node is None:
             try:
@@ -66,7 +66,7 @@ class Base(ABC):
                 # 直接以字符串形式处理
                 if isinstance(nid, str):
                     nid = nid.strip()
-                    
+
                     # 处理包含类名的格式，如 'StringNodeId(ns=4;s=...)' 或 'NumericNodeId(ns=2;i=...)'
                     # 提取括号内的内容
                     match_wrapped = re.match(r'(String|Numeric|Byte|Guid|TwoByteNode|FourByteNode)NodeId\((.*)\)', nid)
@@ -116,16 +116,16 @@ class Base(ABC):
     def read(self) -> Tuple[Any, bool]:
         """读取节点值，返回(值, 是否出错)"""
         pass
-    
+
     @abstractmethod
     def write(self, value: Any) -> bool:
         """写入节点值，返回是否出错"""
         pass
-    
+
     @property
     def type(self) -> NodeType:
         return self._type
-    
+
     @property
     def node_id(self) -> str:
         return self._node_id
@@ -210,15 +210,15 @@ class Method(Base):
         super().__init__(client, name, node_id, NodeType.METHOD, data_type)
         self._parent_node_id = parent_node_id
         self._parent_node = None
-        
+
     def _get_parent_node(self) -> Node:
         if self._parent_node is None:
             try:
                 # 处理父节点ID，使用与_get_node相同的解析逻辑
                 import re
-                
+
                 nid = self._parent_node_id
-                
+
                 # 如果已经是 NodeId 对象，直接使用
                 try:
                     from opcua.ua import NodeId as UaNodeId
@@ -227,16 +227,16 @@ class Method(Base):
                         return self._parent_node
                 except Exception:
                     pass
-                
+
                 # 字符串处理
                 if isinstance(nid, str):
                     nid = nid.strip()
-                    
+
                     # 处理包含类名的格式
                     match_wrapped = re.match(r'(String|Numeric|Byte|Guid|TwoByteNode|FourByteNode)NodeId\((.*)\)', nid)
                     if match_wrapped:
                         nid = match_wrapped.group(2).strip()
-                    
+
                     # 常见短格式
                     if re.match(r'^ns=\d+;[is]=', nid):
                         self._parent_node = self._client.get_node(nid)
@@ -271,7 +271,7 @@ class Method(Base):
     def write(self, value: Any) -> bool:
         """方法节点不支持写入操作"""
         return True
-        
+
     def call(self, *args) -> Tuple[Any, bool]:
         """调用方法，返回(返回值, 是否出错)"""
         try:
@@ -285,7 +285,7 @@ class Method(Base):
 class Object(Base):
     def __init__(self, client: Client, name: str, node_id: str):
         super().__init__(client, name, node_id, NodeType.OBJECT, None)
-        
+
     def read(self) -> Tuple[Any, bool]:
         """对象节点不支持直接读取操作"""
         return None, True
@@ -293,7 +293,7 @@ class Object(Base):
     def write(self, value: Any) -> bool:
         """对象节点不支持直接写入操作"""
         return True
-    
+
     def get_children(self) -> Tuple[List[Node], bool]:
         """获取子节点列表，返回(子节点列表, 是否出错)"""
         try:
@@ -301,4 +301,4 @@ class Object(Base):
             return children, False
         except Exception as e:
             print(f"获取对象 {self._name} 的子节点失败: {e}")
-            return [], True 
+            return [], True

unilabos/devices/liquid_handling/biomek.py

@@ -13,7 +13,7 @@ from pylabrobot.resources import (
 import copy
 from unilabos_msgs.msg import Resource
 
-from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker  # type: ignore
+from unilabos.resources.resource_tracker import DeviceNodeResourceTracker  # type: ignore
 
 
 class LiquidHandlerBiomek:

unilabos/devices/workstation/bioyond_studio/bioyond_rpc.py

@@ -9,7 +9,7 @@ from datetime import datetime, timezone
 from unilabos.device_comms.rpc import BaseRequest
 from typing import Optional, List, Dict, Any
 import json
-from unilabos.devices.workstation.bioyond_studio.config import LOCATION_MAPPING
+
 
 
 class SimpleLogger:
@@ -49,6 +49,14 @@ class BioyondV1RPC(BaseRequest):
         self.config = config
         self.api_key = config["api_key"]
         self.host = config["api_host"]
+
+        # 初始化 location_mapping
+        # 直接从 warehouse_mapping 构建，确保数据源所谓的单一和结构化
+        self.location_mapping = {}
+        warehouse_mapping = self.config.get("warehouse_mapping", {})
+        for warehouse_name, warehouse_config in warehouse_mapping.items():
+            if "site_uuids" in warehouse_config:
+                self.location_mapping.update(warehouse_config["site_uuids"])
         self._logger = SimpleLogger()
         self.material_cache = {}
         self._load_material_cache()
@@ -176,7 +184,40 @@ class BioyondV1RPC(BaseRequest):
             return {}
 
         print(f"add material data: {response['data']}")
-        return response.get("data", {})
+
+        # 自动更新缓存
+        data = response.get("data", {})
+        if data:
+            if isinstance(data, str):
+                # 如果返回的是字符串，通常是ID
+                mat_id = data
+                name = params.get("name")
+            else:
+                # 如果返回的是字典，尝试获取name和id
+                name = data.get("name") or params.get("name")
+                mat_id = data.get("id")
+
+            if name and mat_id:
+                self.material_cache[name] = mat_id
+                print(f"已自动更新缓存: {name} -> {mat_id}")
+
+            # 处理返回数据中的 details (如果有)
+            # 有些 API 返回结构可能直接包含 details，或者在 data 字段中
+            details = data.get("details", []) if isinstance(data, dict) else []
+            if not details and isinstance(data, dict):
+                 details = data.get("detail", [])
+
+            if details:
+                for detail in details:
+                    d_name = detail.get("name")
+                    # 尝试从不同字段获取 ID
+                    d_id = detail.get("id") or detail.get("detailMaterialId")
+
+                    if d_name and d_id:
+                        self.material_cache[d_name] = d_id
+                        print(f"已自动更新 detail 缓存: {d_name} -> {d_id}")
+
+        return data
 
     def query_matial_type_id(self, data) -> list:
         """查找物料typeid"""
@@ -203,7 +244,7 @@ class BioyondV1RPC(BaseRequest):
             params={
                 "apiKey": self.api_key,
                 "requestTime": self.get_current_time_iso8601(),
-                "data": {},
+                "data": 0,
             })
         if not response or response['code'] != 1:
             return []
@@ -273,11 +314,19 @@ class BioyondV1RPC(BaseRequest):
 
         if not response or response['code'] != 1:
             return {}
+
+        # 自动更新缓存 - 移除被删除的物料
+        for name, mid in list(self.material_cache.items()):
+            if mid == material_id:
+                del self.material_cache[name]
+                print(f"已从缓存移除物料: {name}")
+                break
+
         return response.get("data", {})
 
     def material_outbound(self, material_id: str, location_name: str, quantity: int) -> dict:
         """指定库位出库物料（通过库位名称）"""
-        location_id = LOCATION_MAPPING.get(location_name, location_name)
+        location_id = self.location_mapping.get(location_name, location_name)
 
         params = {
             "materialId": material_id,
@@ -1103,6 +1152,10 @@ class BioyondV1RPC(BaseRequest):
                     for detail_material in detail_materials:
                         detail_name = detail_material.get("name")
                         detail_id = detail_material.get("detailMaterialId")
+                        if not detail_id:
+                            # 尝试其他可能的字段
+                            detail_id = detail_material.get("id")
+
                         if detail_name and detail_id:
                             self.material_cache[detail_name] = detail_id
                             print(f"加载detail材料: {detail_name} -> ID: {detail_id}")
@@ -1123,6 +1176,14 @@ class BioyondV1RPC(BaseRequest):
             print(f"从缓存找到材料: {material_name_or_id} -> ID: {material_id}")
             return material_id
 
+        # 如果缓存中没有，尝试刷新缓存
+        print(f"缓存中未找到材料 '{material_name_or_id}'，尝试刷新缓存...")
+        self.refresh_material_cache()
+        if material_name_or_id in self.material_cache:
+            material_id = self.material_cache[material_name_or_id]
+            print(f"刷新缓存后找到材料: {material_name_or_id} -> ID: {material_id}")
+            return material_id
+
         print(f"警告: 未在缓存中找到材料名称 '{material_name_or_id}'，将使用原值")
         return material_name_or_id
 

unilabos/devices/workstation/bioyond_studio/config.py

@@ -1,142 +0,0 @@
-# config.py
-"""
-配置文件 - 包含所有配置信息和映射关系
-"""
-
-# API配置
-API_CONFIG = {
-    "api_key": "",
-    "api_host": ""
-}
-
-# 工作流映射配置
-WORKFLOW_MAPPINGS = {
-    "reactor_taken_out": "",
-    "reactor_taken_in": "",
-    "Solid_feeding_vials": "",
-    "Liquid_feeding_vials(non-titration)": "",
-    "Liquid_feeding_solvents": "",
-    "Liquid_feeding(titration)": "",
-    "liquid_feeding_beaker": "",
-    "Drip_back": "",
-}
-
-# 工作流名称到DisplaySectionName的映射
-WORKFLOW_TO_SECTION_MAP = {
-    'reactor_taken_in': '反应器放入',
-    'liquid_feeding_beaker': '液体投料-烧杯',
-    'Liquid_feeding_vials(non-titration)': '液体投料-小瓶（非滴定）',
-    'Liquid_feeding_solvents': '液体投料-溶剂',
-    'Solid_feeding_vials': '固体投料-小瓶',
-    'Liquid_feeding(titration)': '液体投料-滴定',
-    'reactor_taken_out': '反应器取出'
-}
-
-# 库位映射配置
-WAREHOUSE_MAPPING = {
-    "粉末堆栈": {
-        "uuid": "",
-        "site_uuids": {
-            # 样品板
-            "A1": "3a14198e-6929-31f0-8a22-0f98f72260df",
-            "A2": "3a14198e-6929-4379-affa-9a2935c17f99",
-            "A3": "3a14198e-6929-56da-9a1c-7f5fbd4ae8af",
-            "A4": "3a14198e-6929-5e99-2b79-80720f7cfb54",
-            "B1": "3a14198e-6929-f525-9a1b-1857552b28ee",
-            "B2": "3a14198e-6929-bf98-0fd5-26e1d68bf62d",
-            "B3": "3a14198e-6929-2d86-a468-602175a2b5aa",
-            "B4": "3a14198e-6929-1a98-ae57-e97660c489ad",
-            # 分装板
-            "C1": "3a14198e-6929-46fe-841e-03dd753f1e4a",
-            "C2": "3a14198e-6929-1bc9-a9bd-3b7ca66e7f95",
-            "C3": "3a14198e-6929-72ac-32ce-9b50245682b8",
-            "C4": "3a14198e-6929-3bd8-e6c7-4a9fd93be118",
-            "D1": "3a14198e-6929-8a0b-b686-6f4a2955c4e2",
-            "D2": "3a14198e-6929-dde1-fc78-34a84b71afdf",
-            "D3": "3a14198e-6929-a0ec-5f15-c0f9f339f963",
-            "D4": "3a14198e-6929-7ac8-915a-fea51cb2e884"
-        }
-    },
-    "溶液堆栈": {
-        "uuid": "",
-        "site_uuids": {
-            "A1": "3a14198e-d724-e036-afdc-2ae39a7f3383",
-            "A2": "3a14198e-d724-afa4-fc82-0ac8a9016791",
-            "A3": "3a14198e-d724-ca48-bb9e-7e85751e55b6",
-            "A4": "3a14198e-d724-df6d-5e32-5483b3cab583",
-            "B1": "3a14198e-d724-d818-6d4f-5725191a24b5",
-            "B2": "3a14198e-d724-be8a-5e0b-012675e195c6",
-            "B3": "3a14198e-d724-cc1e-5c2c-228a130f40a8",
-            "B4": "3a14198e-d724-1e28-c885-574c3df468d0",
-            "C1": "3a14198e-d724-b5bb-adf3-4c5a0da6fb31",
-            "C2": "3a14198e-d724-ab4e-48cb-817c3c146707",
-            "C3": "3a14198e-d724-7f18-1853-39d0c62e1d33",
-            "C4": "3a14198e-d724-28a2-a760-baa896f46b66",
-            "D1": "3a14198e-d724-d378-d266-2508a224a19f",
-            "D2": "3a14198e-d724-f56e-468b-0110a8feb36a",
-            "D3": "3a14198e-d724-0cf1-dea9-a1f40fe7e13c",
-            "D4": "3a14198e-d724-0ddd-9654-f9352a421de9"
-        }
-    },
-    "试剂堆栈": {
-        "uuid": "",
-        "site_uuids": {
-            "A1": "3a14198c-c2cf-8b40-af28-b467808f1c36",
-            "A2": "3a14198c-c2d0-f3e7-871a-e470d144296f",
-            "A3": "3a14198c-c2d0-dc7d-b8d0-e1d88cee3094",
-            "A4": "3a14198c-c2d0-2070-efc8-44e245f10c6f",
-            "B1": "3a14198c-c2d0-354f-39ad-642e1a72fcb8",
-            "B2": "3a14198c-c2d0-1559-105d-0ea30682cab4",
-            "B3": "3a14198c-c2d0-725e-523d-34c037ac2440",
-            "B4": "3a14198c-c2d0-efce-0939-69ca5a7dfd39"
-        }
-    }
-}
-
-# 物料类型配置
-MATERIAL_TYPE_MAPPINGS = {
-    "烧杯": ("BIOYOND_PolymerStation_1FlaskCarrier", "3a14196b-24f2-ca49-9081-0cab8021bf1a"),
-    "试剂瓶": ("BIOYOND_PolymerStation_1BottleCarrier", ""),
-    "样品板": ("BIOYOND_PolymerStation_6StockCarrier", "3a14196e-b7a0-a5da-1931-35f3000281e9"),
-    "分装板": ("BIOYOND_PolymerStation_6VialCarrier", "3a14196e-5dfe-6e21-0c79-fe2036d052c4"),
-    "样品瓶": ("BIOYOND_PolymerStation_Solid_Stock", "3a14196a-cf7d-8aea-48d8-b9662c7dba94"),
-    "90%分装小瓶": ("BIOYOND_PolymerStation_Solid_Vial", "3a14196c-cdcf-088d-dc7d-5cf38f0ad9ea"),
-    "10%分装小瓶": ("BIOYOND_PolymerStation_Liquid_Vial", "3a14196c-76be-2279-4e22-7310d69aed68"),
-}
-
-# 步骤参数配置（各工作流的步骤UUID）
-WORKFLOW_STEP_IDS = {
-    "reactor_taken_in": {
-        "config": ""
-    },
-    "liquid_feeding_beaker": {
-        "liquid": "",
-        "observe": ""
-    },
-    "liquid_feeding_vials_non_titration": {
-        "liquid": "",
-        "observe": ""
-    },
-    "liquid_feeding_solvents": {
-        "liquid": "",
-        "observe": ""
-    },
-    "solid_feeding_vials": {
-        "feeding": "",
-        "observe": ""
-    },
-    "liquid_feeding_titration": {
-        "liquid": "",
-        "observe": ""
-    },
-    "drip_back": {
-        "liquid": "",
-        "observe": ""
-    }
-}
-
-LOCATION_MAPPING = {}
-
-ACTION_NAMES = {}
-
-HTTP_SERVICE_CONFIG = {}

unilabos/devices/workstation/bioyond_studio/config.py.deprecated

@@ -0,0 +1,329 @@
+# config.py
+"""
+Bioyond工作站配置文件
+包含API配置、工作流映射、物料类型映射、仓库库位映射等所有配置信息
+"""
+
+from unilabos.resources.bioyond.decks import BIOYOND_PolymerReactionStation_Deck
+
+# ============================================================================
+# 基础配置
+# ============================================================================
+
+# API配置
+API_CONFIG = {
+    "api_key": "DE9BDDA0",
+    "api_host": "http://192.168.1.200:44402"
+}
+
+# HTTP 报送服务配置
+HTTP_SERVICE_CONFIG = {
+    "http_service_host": "127.0.0.1",  # 监听地址
+    "http_service_port": 8080,        # 监听端口
+}
+
+# Deck配置 - 反应站工作台配置
+DECK_CONFIG = BIOYOND_PolymerReactionStation_Deck(setup=True)
+
+# ============================================================================
+# 工作流配置
+# ============================================================================
+
+# 工作流ID映射
+WORKFLOW_MAPPINGS = {
+    "reactor_taken_out": "3a16081e-4788-ca37-eff4-ceed8d7019d1",
+    "reactor_taken_in": "3a160df6-76b3-0957-9eb0-cb496d5721c6",
+    "Solid_feeding_vials": "3a160877-87e7-7699-7bc6-ec72b05eb5e6",
+    "Liquid_feeding_vials(non-titration)": "3a167d99-6158-c6f0-15b5-eb030f7d8e47",
+    "Liquid_feeding_solvents": "3a160824-0665-01ed-285a-51ef817a9046",
+    "Liquid_feeding(titration)": "3a16082a-96ac-0449-446a-4ed39f3365b6",
+    "liquid_feeding_beaker": "3a16087e-124f-8ddb-8ec1-c2dff09ca784",
+    "Drip_back": "3a162cf9-6aac-565a-ddd7-682ba1796a4a",
+}
+
+# 工作流名称到显示名称的映射
+WORKFLOW_TO_SECTION_MAP = {
+    'reactor_taken_in': '反应器放入',
+    'reactor_taken_out': '反应器取出',
+    'Solid_feeding_vials': '固体投料-小瓶',
+    'Liquid_feeding_vials(non-titration)': '液体投料-小瓶（非滴定）',
+    'Liquid_feeding_solvents': '液体投料-溶剂',
+    'Liquid_feeding(titration)': '液体投料-滴定',
+    'liquid_feeding_beaker': '液体投料-烧杯',
+    'Drip_back': '液体回滴'
+}
+
+# 工作流步骤ID配置
+WORKFLOW_STEP_IDS = {
+    "reactor_taken_in": {
+        "config": "60a06f85-c5b3-29eb-180f-4f62dd7e2154"
+    },
+    "liquid_feeding_beaker": {
+        "liquid": "6808cda7-fee7-4092-97f0-5f9c2ffa60e3",
+        "observe": "1753c0de-dffc-4ee6-8458-805a2e227362"
+    },
+    "liquid_feeding_vials_non_titration": {
+        "liquid": "62ea6e95-3d5d-43db-bc1e-9a1802673861",
+        "observe": "3a167d99-6172-b67b-5f22-a7892197142e"
+    },
+    "liquid_feeding_solvents": {
+        "liquid": "1fcea355-2545-462b-b727-350b69a313bf",
+        "observe": "0553dfb3-9ac5-4ace-8e00-2f11029919a8"
+    },
+    "solid_feeding_vials": {
+        "feeding": "f7ae7448-4f20-4c1d-8096-df6fbadd787a",
+        "observe": "263c7ed5-7277-426b-bdff-d6fbf77bcc05"
+    },
+    "liquid_feeding_titration": {
+        "liquid": "a00ec41b-e666-4422-9c20-bfcd3cd15c54",
+        "observe": "ac738ff6-4c58-4155-87b1-d6f65a2c9ab5"
+    },
+    "drip_back": {
+        "liquid": "371be86a-ab77-4769-83e5-54580547c48a",
+        "observe": "ce024b9d-bd20-47b8-9f78-ca5ce7f44cf1"
+    }
+}
+
+# 工作流动作名称配置
+ACTION_NAMES = {
+    "reactor_taken_in": {
+        "config": "通量-配置",
+        "stirring": "反应模块-开始搅拌"
+    },
+    "solid_feeding_vials": {
+        "feeding": "粉末加样模块-投料",
+        "observe": "反应模块-观察搅拌结果"
+    },
+    "liquid_feeding_vials_non_titration": {
+        "liquid": "稀释液瓶加液位-液体投料",
+        "observe": "反应模块-滴定结果观察"
+    },
+    "liquid_feeding_solvents": {
+        "liquid": "试剂AB放置位-试剂吸液分液",
+        "observe": "反应模块-观察搅拌结果"
+    },
+    "liquid_feeding_titration": {
+        "liquid": "稀释液瓶加液位-稀释液吸液分液",
+        "observe": "反应模块-滴定结果观察"
+    },
+    "liquid_feeding_beaker": {
+        "liquid": "烧杯溶液放置位-烧杯吸液分液",
+        "observe": "反应模块-观察搅拌结果"
+    },
+    "drip_back": {
+        "liquid": "试剂AB放置位-试剂吸液分液",
+        "observe": "反应模块-向下滴定结果观察"
+    }
+}
+
+# ============================================================================
+# 仓库配置
+# ============================================================================
+# 说明:
+# - 出库和入库操作都需要UUID
+WAREHOUSE_MAPPING = {
+    # ========== 反应站仓库 ==========
+
+    # 堆栈1左 - 反应站左侧堆栈 (4行×4列=16个库位, A01～D04)
+    "堆栈1左": {
+        "uuid": "3a14aa17-0d49-dce4-486e-4b5c85c8b366",
+        "site_uuids": {
+            "A01": "3a14aa17-0d49-11d7-a6e1-f236b3e5e5a3",
+            "A02": "3a14aa17-0d49-4bc5-8836-517b75473f5f",
+            "A03": "3a14aa17-0d49-c2bc-6222-5cee8d2d94f8",
+            "A04": "3a14aa17-0d49-3ce2-8e9a-008c38d116fb",
+            "B01": "3a14aa17-0d49-f49c-6b66-b27f185a3b32",
+            "B02": "3a14aa17-0d49-cf46-df85-a979c9c9920c",
+            "B03": "3a14aa17-0d49-7698-4a23-f7ffb7d48ba3",
+            "B04": "3a14aa17-0d49-1231-99be-d5870e6478e9",
+            "C01": "3a14aa17-0d49-be34-6fae-4aed9d48b70b",
+            "C02": "3a14aa17-0d49-11d7-0897-34921dcf6b7c",
+            "C03": "3a14aa17-0d49-9840-0bd5-9c63c1bb2c29",
+            "C04": "3a14aa17-0d49-8335-3bff-01da69ea4911",
+            "D01": "3a14aa17-0d49-2bea-c8e5-2b32094935d5",
+            "D02": "3a14aa17-0d49-cff4-e9e8-5f5f0bc1ef32",
+            "D03": "3a14aa17-0d49-4948-cb0a-78f30d1ca9b8",
+            "D04": "3a14aa17-0d49-fd2f-9dfb-a29b11e84099",
+        },
+    },
+
+    # 堆栈1右 - 反应站右侧堆栈 (4行×4列=16个库位, A05～D08)
+    "堆栈1右": {
+        "uuid": "3a14aa17-0d49-dce4-486e-4b5c85c8b366",
+        "site_uuids": {
+            "A05": "3a14aa17-0d49-2c61-edc8-72a8ca7192dd",
+            "A06": "3a14aa17-0d49-60c8-2b00-40b17198f397",
+            "A07": "3a14aa17-0d49-ec5b-0b75-634dce8eed25",
+            "A08": "3a14aa17-0d49-3ec9-55b3-f3189c4ec53d",
+            "B05": "3a14aa17-0d49-6a4e-abcf-4c113eaaeaad",
+            "B06": "3a14aa17-0d49-e3f6-2dd6-28c2e8194fbe",
+            "B07": "3a14aa17-0d49-11a6-b861-ee895121bf52",
+            "B08": "3a14aa17-0d49-9c7d-1145-d554a6e482f0",
+            "C05": "3a14aa17-0d49-45c4-7a34-5105bc3e2368",
+            "C06": "3a14aa17-0d49-867e-39ab-31b3fe9014be",
+            "C07": "3a14aa17-0d49-ec56-c4b4-39fd9b2131e7",
+            "C08": "3a14aa17-0d49-1128-d7d9-ffb1231c98c0",
+            "D05": "3a14aa17-0d49-e843-f961-ea173326a14b",
+            "D06": "3a14aa17-0d49-4d26-a985-f188359c4f8b",
+            "D07": "3a14aa17-0d49-223a-b520-bc092bb42fe0",
+            "D08": "3a14aa17-0d49-4fa3-401a-6a444e1cca22",
+        },
+    },
+
+    # 站内试剂存放堆栈
+    "站内试剂存放堆栈": {
+        "uuid": "3a14aa3b-9fab-9d8e-d1a7-828f01f51f0c",
+        "site_uuids": {
+            "A01": "3a14aa3b-9fab-adac-7b9c-e1ee446b51d5",
+            "A02": "3a14aa3b-9fab-ca72-febc-b7c304476c78"
+        }
+    },
+
+
+    # 测量小瓶仓库（测密度）
+    "测量小瓶仓库": {
+        "uuid": "3a15012f-705b-c0de-3f9e-950c205f9921",
+        "site_uuids": {
+            "A01": "3a15012f-705e-0524-3161-c523b5aebc97",
+            "A02": "3a15012f-705e-7cd1-32ab-ad4fd1ab75c8",
+            "A03": "3a15012f-705e-a5d6-edac-bdbfec236260",
+            "B01": "3a15012f-705e-e0ee-80e0-10a6b3fc500d",
+            "B02": "3a15012f-705e-e499-180d-de06d60d0b21",
+            "B03": "3a15012f-705e-eff6-63f1-09f742096b26"
+        }
+    },
+
+    # 站内Tip盒堆栈 - 用于存放枪头盒 (耗材)
+    "站内Tip盒堆栈": {
+        "uuid": "3a14aa3a-2d3c-b5c1-9ddf-7c4a957d459a",
+        "site_uuids": {
+            "A01": "3a14aa3a-2d3d-e700-411a-0ddf85e1f18a",
+            "A02": "3a14aa3a-2d3d-a7ce-099a-d5632fdafa24",
+            "A03": "3a14aa3a-2d3d-bdf6-a702-c60b38b08501",
+            "B01": "3a14aa3a-2d3d-d704-f076-2a8d5bc72cb8",
+            "B02": "3a14aa3a-2d3d-c350-2526-0778d173a5ac",
+            "B03": "3a14aa3a-2d3d-bc38-b356-f0de2e44e0c7"
+        }
+    },
+    # ========== 配液站仓库 ==========
+    "粉末堆栈": {
+        "uuid": "3a14198e-6928-121f-7ca6-88ad3ae7e6a0",
+        "site_uuids": {
+            "A01": "3a14198e-6929-31f0-8a22-0f98f72260df",
+            "A02": "3a14198e-6929-4379-affa-9a2935c17f99",
+            "A03": "3a14198e-6929-56da-9a1c-7f5fbd4ae8af",
+            "A04": "3a14198e-6929-5e99-2b79-80720f7cfb54",
+            "B01": "3a14198e-6929-f525-9a1b-1857552b28ee",
+            "B02": "3a14198e-6929-bf98-0fd5-26e1d68bf62d",
+            "B03": "3a14198e-6929-2d86-a468-602175a2b5aa",
+            "B04": "3a14198e-6929-1a98-ae57-e97660c489ad",
+            "C01": "3a14198e-6929-46fe-841e-03dd753f1e4a",
+            "C02": "3a14198e-6929-72ac-32ce-9b50245682b8",
+            "C03": "3a14198e-6929-8a0b-b686-6f4a2955c4e2",
+            "C04": "3a14198e-6929-a0ec-5f15-c0f9f339f963",
+            "D01": "3a14198e-6929-1bc9-a9bd-3b7ca66e7f95",
+            "D02": "3a14198e-6929-3bd8-e6c7-4a9fd93be118",
+            "D03": "3a14198e-6929-dde1-fc78-34a84b71afdf",
+            "D04": "3a14198e-6929-7ac8-915a-fea51cb2e884"
+        }
+    },
+    "溶液堆栈": {
+        "uuid": "3a14198e-d723-2c13-7d12-50143e190a23",
+        "site_uuids": {
+            "A01": "3a14198e-d724-e036-afdc-2ae39a7f3383",
+            "A02": "3a14198e-d724-d818-6d4f-5725191a24b5",
+            "A03": "3a14198e-d724-b5bb-adf3-4c5a0da6fb31",
+            "A04": "3a14198e-d724-d378-d266-2508a224a19f",
+            "B01": "3a14198e-d724-afa4-fc82-0ac8a9016791",
+            "B02": "3a14198e-d724-be8a-5e0b-012675e195c6",
+            "B03": "3a14198e-d724-ab4e-48cb-817c3c146707",
+            "B04": "3a14198e-d724-f56e-468b-0110a8feb36a",
+            "C01": "3a14198e-d724-ca48-bb9e-7e85751e55b6",
+            "C02": "3a14198e-d724-cc1e-5c2c-228a130f40a8",
+            "C03": "3a14198e-d724-7f18-1853-39d0c62e1d33",
+            "C04": "3a14198e-d724-0cf1-dea9-a1f40fe7e13c",
+            "D01": "3a14198e-d724-df6d-5e32-5483b3cab583",
+            "D02": "3a14198e-d724-1e28-c885-574c3df468d0",
+            "D03": "3a14198e-d724-28a2-a760-baa896f46b66",
+            "D04": "3a14198e-d724-0ddd-9654-f9352a421de9"
+        }
+    },
+    "试剂堆栈": {
+        "uuid": "3a14198c-c2cc-0290-e086-44a428fba248",
+        "site_uuids": {
+            "A01": "3a14198c-c2cf-8b40-af28-b467808f1c36",  # x=1, y=1, code=0001-0001
+            "A02": "3a14198c-c2d0-dc7d-b8d0-e1d88cee3094",  # x=1, y=2, code=0001-0002
+            "A03": "3a14198c-c2d0-354f-39ad-642e1a72fcb8",  # x=1, y=3, code=0001-0003
+            "A04": "3a14198c-c2d0-725e-523d-34c037ac2440",  # x=1, y=4, code=0001-0004
+            "B01": "3a14198c-c2d0-f3e7-871a-e470d144296f",  # x=2, y=1, code=0001-0005
+            "B02": "3a14198c-c2d0-2070-efc8-44e245f10c6f",  # x=2, y=2, code=0001-0006
+            "B03": "3a14198c-c2d0-1559-105d-0ea30682cab4",  # x=2, y=3, code=0001-0007
+            "B04": "3a14198c-c2d0-efce-0939-69ca5a7dfd39"   # x=2, y=4, code=0001-0008
+        }
+    }
+}
+
+# ============================================================================
+# 物料类型配置
+# ============================================================================
+# 说明:
+# - 格式: PyLabRobot资源类型名称 → Bioyond系统typeId的UUID
+# - 这个映射基于 resource.model 属性 (不是显示名称!)
+# - UUID为空表示该类型暂未在Bioyond系统中定义
+MATERIAL_TYPE_MAPPINGS = {
+    # ================================================配液站资源============================================================
+    # ==================================================样品===============================================================
+    "BIOYOND_PolymerStation_1FlaskCarrier": ("烧杯", "3a14196b-24f2-ca49-9081-0cab8021bf1a"),  # 配液站-样品-烧杯
+    "BIOYOND_PolymerStation_1BottleCarrier": ("试剂瓶", "3a14196b-8bcf-a460-4f74-23f21ca79e72"),  # 配液站-样品-试剂瓶
+    "BIOYOND_PolymerStation_6StockCarrier": ("分装板", "3a14196e-5dfe-6e21-0c79-fe2036d052c4"),  # 配液站-样品-分装板
+    "BIOYOND_PolymerStation_Liquid_Vial": ("10%分装小瓶", "3a14196c-76be-2279-4e22-7310d69aed68"),  # 配液站-样品-分装板-第一排小瓶
+    "BIOYOND_PolymerStation_Solid_Vial": ("90%分装小瓶", "3a14196c-cdcf-088d-dc7d-5cf38f0ad9ea"),  # 配液站-样品-分装板-第二排小瓶
+    # ==================================================试剂===============================================================
+    "BIOYOND_PolymerStation_8StockCarrier": ("样品板", "3a14196e-b7a0-a5da-1931-35f3000281e9"),  # 配液站-试剂-样品板（8孔）
+    "BIOYOND_PolymerStation_Solid_Stock": ("样品瓶", "3a14196a-cf7d-8aea-48d8-b9662c7dba94"),  # 配液站-试剂-样品板-样品瓶
+
+}
+
+# ============================================================================
+# 动态生成的库位UUID映射（从WAREHOUSE_MAPPING中提取）
+# ============================================================================
+
+LOCATION_MAPPING = {}
+for warehouse_name, warehouse_config in WAREHOUSE_MAPPING.items():
+    if "site_uuids" in warehouse_config:
+        LOCATION_MAPPING.update(warehouse_config["site_uuids"])
+
+# ============================================================================
+# 物料默认参数配置
+# ============================================================================
+# 说明:
+# - 为特定物料名称自动添加默认参数（如密度、分子量、单位等）
+# - 格式: 物料名称 → {参数字典}
+# - 在创建或更新物料时，会自动合并这些参数到 Parameters 字段
+# - unit: 物料的计量单位（会用于 unit 字段）
+# - density/densityUnit: 密度信息（会添加到 Parameters 中）
+
+MATERIAL_DEFAULT_PARAMETERS = {
+    # 溶剂类
+    "NMP": {
+        "unit": "毫升",
+        "density": "1.03",
+        "densityUnit": "g/mL",
+        "description": "N-甲基吡咯烷酮 (N-Methyl-2-pyrrolidone)"
+    },
+    # 可以继续添加其他物料...
+}
+
+# ============================================================================
+# 物料类型默认参数配置
+# ============================================================================
+# 说明:
+# - 为特定物料类型（UUID）自动添加默认参数
+# - 格式: Bioyond类型UUID → {参数字典}
+# - 优先级低于按名称匹配的配置
+MATERIAL_TYPE_PARAMETERS = {
+    # 示例:
+    # "3a14196b-24f2-ca49-9081-0cab8021bf1a": {  # 烧杯
+    #     "unit": "个"
+    # }
+}

unilabos/devices/workstation/bioyond_studio/dispensing_station/dispensing_station.py

@@ -4,7 +4,8 @@ import time
 from typing import Optional, Dict, Any, List
 from typing_extensions import TypedDict
 import requests
-from unilabos.devices.workstation.bioyond_studio.config import API_CONFIG
+import pint
+
 
 from unilabos.devices.workstation.bioyond_studio.bioyond_rpc import BioyondException
 from unilabos.devices.workstation.bioyond_studio.station import BioyondWorkstation
@@ -25,13 +26,89 @@ class ComputeExperimentDesignReturn(TypedDict):
 class BioyondDispensingStation(BioyondWorkstation):
     def __init__(
         self,
-        config,
-            # 桌子
-        deck,
-        *args,
+        config: dict = None,
+        deck=None,
+        protocol_type=None,
         **kwargs,
-        ):
-        super().__init__(config, deck, *args, **kwargs)
+    ):
+        """初始化配液站
+
+        Args:
+            config: 配置字典,应包含material_type_mappings等配置
+            deck: Deck对象
+            protocol_type: 协议类型(由ROS系统传递,此处忽略)
+            **kwargs: 其他可能的参数
+        """
+        if config is None:
+            config = {}
+
+        # 将 kwargs 合并到 config 中 (处理扁平化配置如 api_key)
+        config.update(kwargs)
+
+        if deck is None and config:
+            deck = config.get('deck')
+
+        # 🔧 修复: 确保 Deck 上的 warehouses 具有正确的 UUID (必须在 super().__init__ 之前执行，因为父类会触发同步)
+        # 从配置中读取 warehouse_mapping，并应用到实际的 deck 资源上
+        if config and "warehouse_mapping" in config and deck:
+            warehouse_mapping = config["warehouse_mapping"]
+            print(f"正在根据配置更新 Deck warehouse UUIDs... (共有 {len(warehouse_mapping)} 个配置)")
+
+            user_deck = deck
+            # 初始化 warehouses 字典
+            if not hasattr(user_deck, "warehouses") or user_deck.warehouses is None:
+                user_deck.warehouses = {}
+
+            # 1. 尝试从 children 中查找匹配的资源
+            for child in user_deck.children:
+                # 简单判断: 如果名字在 mapping 中，就认为是 warehouse
+                if child.name in warehouse_mapping:
+                    user_deck.warehouses[child.name] = child
+                    print(f"  - 从子资源中找到 warehouse: {child.name}")
+
+            # 2. 如果还是没找到，且 Deck 类有 setup 方法，尝试调用 setup (针对 Deck 对象正确但未初始化的情况)
+            if not user_deck.warehouses and hasattr(user_deck, "setup"):
+                print("  - 尝试调用 deck.setup() 初始化仓库...")
+                try:
+                    user_deck.setup()
+                    # setup 后重新检查
+                    if hasattr(user_deck, "warehouses") and user_deck.warehouses:
+                            print(f"  - setup() 成功，找到 {len(user_deck.warehouses)} 个仓库")
+                except Exception as e:
+                    print(f"  - 调用 setup() 失败: {e}")
+
+            # 3. 如果仍然为空，可能需要手动创建 (仅针对特定已知的 Deck 类型进行补救，这里暂时只打印警告)
+            if not user_deck.warehouses:
+                    print("  - ⚠️ 仍然无法找到任何 warehouse 资源！")
+
+            for wh_name, wh_config in warehouse_mapping.items():
+                target_uuid = wh_config.get("uuid")
+
+                # 尝试在 deck.warehouses 中查找
+                wh_resource = None
+                if hasattr(user_deck, "warehouses") and wh_name in user_deck.warehouses:
+                    wh_resource = user_deck.warehouses[wh_name]
+
+                # 如果没找到，尝试在所有子资源中查找
+                if not wh_resource:
+                    wh_resource = user_deck.get_resource(wh_name)
+
+                if wh_resource:
+                    if target_uuid:
+                        current_uuid = getattr(wh_resource, "uuid", None)
+                        print(f"✅ 更新仓库 '{wh_name}' UUID: {current_uuid} -> {target_uuid}")
+
+                        # 动态添加 uuid 属性
+                        wh_resource.uuid = target_uuid
+                        # 同时也确保 category 正确，避免 graphio 识别错误
+                        # wh_resource.category = "warehouse"
+                    else:
+                            print(f"⚠️ 仓库 '{wh_name}' 在配置中没有 UUID")
+                else:
+                    print(f"❌ 在 Deck 中未找到配置的仓库: '{wh_name}'")
+
+        super().__init__(bioyond_config=config, deck=deck)
+
         # self.config = config
         # self.api_key = config["api_key"]
         # self.host = config["api_host"]
@@ -43,6 +120,41 @@ class BioyondDispensingStation(BioyondWorkstation):
         # 用于跟踪任务完成状态的字典: {orderCode: {status, order_id, timestamp}}
         self.order_completion_status = {}
 
+        # 初始化 pint 单位注册表
+        self.ureg = pint.UnitRegistry()
+
+        # 化合物信息
+        self.compound_info = {
+            "MolWt": {
+                "MDA": 108.14 * self.ureg.g / self.ureg.mol,
+                "TDA": 122.16 * self.ureg.g / self.ureg.mol,
+                "PAPP": 521.62 * self.ureg.g / self.ureg.mol,
+                "BTDA": 322.23 * self.ureg.g / self.ureg.mol,
+                "BPDA": 294.22 * self.ureg.g / self.ureg.mol,
+                "6FAP": 366.26 * self.ureg.g / self.ureg.mol,
+                "PMDA": 218.12 * self.ureg.g / self.ureg.mol,
+                "MPDA": 108.14 * self.ureg.g / self.ureg.mol,
+                "SIDA": 248.51 * self.ureg.g / self.ureg.mol,
+                "ODA": 200.236 * self.ureg.g / self.ureg.mol,
+                "4,4'-ODA": 200.236 * self.ureg.g / self.ureg.mol,
+                "134": 292.34 * self.ureg.g / self.ureg.mol,
+            },
+            "FuncGroup": {
+                "MDA": "Amine",
+                "TDA": "Amine",
+                "PAPP": "Amine",
+                "BTDA": "Anhydride",
+                "BPDA": "Anhydride",
+                "6FAP": "Amine",
+                "MPDA": "Amine",
+                "SIDA": "Amine",
+                "PMDA": "Anhydride",
+                "ODA": "Amine",
+                "4,4'-ODA": "Amine",
+                "134": "Amine",
+            }
+        }
+
     def _post_project_api(self, endpoint: str, data: Any) -> Dict[str, Any]:
         """项目接口通用POST调用
 
@@ -54,7 +166,7 @@ class BioyondDispensingStation(BioyondWorkstation):
             dict: 服务端响应，失败时返回 {code:0,message,...}
         """
         request_data = {
-            "apiKey": API_CONFIG["api_key"],
+            "apiKey": self.bioyond_config["api_key"],
             "requestTime": self.hardware_interface.get_current_time_iso8601(),
             "data": data
         }
@@ -85,7 +197,7 @@ class BioyondDispensingStation(BioyondWorkstation):
             dict: 服务端响应，失败时返回 {code:0,message,...}
         """
         request_data = {
-            "apiKey": API_CONFIG["api_key"],
+            "apiKey": self.bioyond_config["api_key"],
             "requestTime": self.hardware_interface.get_current_time_iso8601(),
             "data": data
         }
@@ -118,20 +230,22 @@ class BioyondDispensingStation(BioyondWorkstation):
                     ratio = json.loads(ratio)
                 except Exception:
                     ratio = {}
-            root = str(Path(__file__).resolve().parents[3])
-            if root not in sys.path:
-                sys.path.append(root)
-            try:
-                mod = importlib.import_module("tem.compute")
-            except Exception as e:
-                raise BioyondException(f"无法导入计算模块: {e}")
             try:
                 wp = float(wt_percent) if isinstance(wt_percent, str) else wt_percent
                 mt = float(m_tot) if isinstance(m_tot, str) else m_tot
                 tp = float(titration_percent) if isinstance(titration_percent, str) else titration_percent
             except Exception as e:
                 raise BioyondException(f"参数解析失败: {e}")
-            res = mod.generate_experiment_design(ratio=ratio, wt_percent=wp, m_tot=mt, titration_percent=tp)
+
+            # 2. 调用内部计算方法
+            res = self._generate_experiment_design(
+                ratio=ratio,
+                wt_percent=wp,
+                m_tot=mt,
+                titration_percent=tp
+            )
+
+            # 3. 构造返回结果
             out = {
                 "solutions": res.get("solutions", []),
                 "titration": res.get("titration", {}),
@@ -140,11 +254,248 @@ class BioyondDispensingStation(BioyondWorkstation):
                 "return_info": json.dumps(res, ensure_ascii=False)
             }
             return out
+
         except BioyondException:
             raise
         except Exception as e:
             raise BioyondException(str(e))
 
+    def _generate_experiment_design(
+        self,
+        ratio: dict,
+        wt_percent: float = 0.25,
+        m_tot: float = 70,
+        titration_percent: float = 0.03,
+    ) -> dict:
+        """内部方法：生成实验设计
+
+        根据FuncGroup自动区分二胺和二酐，每种二胺单独配溶液，严格按照ratio顺序投料。
+
+        参数:
+            ratio: 化合物配比字典，格式: {"compound_name": ratio_value}
+            wt_percent: 固体重量百分比
+            m_tot: 反应混合物总质量(g)
+            titration_percent: 滴定溶液百分比
+
+        返回:
+            包含实验设计详细参数的字典
+        """
+        # 溶剂密度
+        ρ_solvent = 1.03 * self.ureg.g / self.ureg.ml
+        # 二酐溶解度
+        solubility = 0.02 * self.ureg.g / self.ureg.ml
+        # 投入固体时最小溶剂体积
+        V_min = 30 * self.ureg.ml
+        m_tot = m_tot * self.ureg.g
+
+        # 保持ratio中的顺序
+        compound_names = list(ratio.keys())
+        compound_ratios = list(ratio.values())
+
+        # 验证所有化合物是否在 compound_info 中定义
+        undefined_compounds = [name for name in compound_names if name not in self.compound_info["MolWt"]]
+        if undefined_compounds:
+            available = list(self.compound_info["MolWt"].keys())
+            raise ValueError(
+                f"以下化合物未在 compound_info 中定义: {undefined_compounds}。"
+                f"可用的化合物: {available}"
+            )
+
+        # 获取各化合物的分子量和官能团类型
+        molecular_weights = [self.compound_info["MolWt"][name] for name in compound_names]
+        func_groups = [self.compound_info["FuncGroup"][name] for name in compound_names]
+
+        # 记录化合物信息用于调试
+        self.hardware_interface._logger.info(f"化合物名称: {compound_names}")
+        self.hardware_interface._logger.info(f"官能团类型: {func_groups}")
+
+        # 按原始顺序分离二胺和二酐
+        ordered_compounds = list(zip(compound_names, compound_ratios, molecular_weights, func_groups))
+        diamine_compounds = [(name, ratio_val, mw, i) for i, (name, ratio_val, mw, fg) in enumerate(ordered_compounds) if fg == "Amine"]
+        anhydride_compounds = [(name, ratio_val, mw, i) for i, (name, ratio_val, mw, fg) in enumerate(ordered_compounds) if fg == "Anhydride"]
+
+        if not diamine_compounds or not anhydride_compounds:
+            raise ValueError(
+                f"需要同时包含二胺(Amine)和二酐(Anhydride)化合物。"
+                f"当前二胺: {[c[0] for c in diamine_compounds]}, "
+                f"当前二酐: {[c[0] for c in anhydride_compounds]}"
+            )
+
+        # 计算加权平均分子量 (基于摩尔比)
+        total_molar_ratio = sum(compound_ratios)
+        weighted_molecular_weight = sum(ratio_val * mw for ratio_val, mw in zip(compound_ratios, molecular_weights))
+
+        # 取最后一个二酐用于滴定
+        titration_anhydride = anhydride_compounds[-1]
+        solid_anhydrides = anhydride_compounds[:-1] if len(anhydride_compounds) > 1 else []
+
+        # 二胺溶液配制参数 - 每种二胺单独配制
+        diamine_solutions = []
+        total_diamine_volume = 0 * self.ureg.ml
+
+        # 计算反应物的总摩尔量
+        n_reactant = m_tot * wt_percent / weighted_molecular_weight
+
+        for name, ratio_val, mw, order_index in diamine_compounds:
+            # 跳过 SIDA
+            if name == "SIDA":
+                continue
+
+            # 计算该二胺需要的摩尔数
+            n_diamine_needed = n_reactant * ratio_val
+
+            # 二胺溶液配制参数 (每种二胺固定配制参数)
+            m_diamine_solid = 5.0 * self.ureg.g  # 每种二胺固体质量
+            V_solvent_for_this = 20 * self.ureg.ml  # 每种二胺溶剂体积
+            m_solvent_for_this = ρ_solvent * V_solvent_for_this
+
+            # 计算该二胺溶液的浓度
+            c_diamine = (m_diamine_solid / mw) / V_solvent_for_this
+
+            # 计算需要移取的溶液体积
+            V_diamine_needed = n_diamine_needed / c_diamine
+
+            diamine_solutions.append({
+                "name": name,
+                "order": order_index,
+                "solid_mass": m_diamine_solid.magnitude,
+                "solvent_volume": V_solvent_for_this.magnitude,
+                "concentration": c_diamine.magnitude,
+                "volume_needed": V_diamine_needed.magnitude,
+                "molar_ratio": ratio_val
+            })
+
+            total_diamine_volume += V_diamine_needed
+
+        # 按原始顺序排序
+        diamine_solutions.sort(key=lambda x: x["order"])
+
+        # 计算滴定二酐的质量
+        titration_name, titration_ratio, titration_mw, _ = titration_anhydride
+        m_titration_anhydride = n_reactant * titration_ratio * titration_mw
+        m_titration_90 = m_titration_anhydride * (1 - titration_percent)
+        m_titration_10 = m_titration_anhydride * titration_percent
+
+        # 计算其他固体二酐的质量 (按顺序)
+        solid_anhydride_masses = []
+        for name, ratio_val, mw, order_index in solid_anhydrides:
+            mass = n_reactant * ratio_val * mw
+            solid_anhydride_masses.append({
+                "name": name,
+                "order": order_index,
+                "mass": mass.magnitude,
+                "molar_ratio": ratio_val
+            })
+
+        # 按原始顺序排序
+        solid_anhydride_masses.sort(key=lambda x: x["order"])
+
+        # 计算溶剂用量
+        total_diamine_solution_mass = sum(
+            sol["volume_needed"] * ρ_solvent for sol in diamine_solutions
+        ) * self.ureg.ml
+
+        # 预估滴定溶剂量、计算补加溶剂量
+        m_solvent_titration = m_titration_10 / solubility * ρ_solvent
+        m_solvent_add = m_tot * (1 - wt_percent) - total_diamine_solution_mass - m_solvent_titration
+
+        # 检查最小溶剂体积要求
+        total_liquid_volume = (total_diamine_solution_mass + m_solvent_add) / ρ_solvent
+        m_tot_min = V_min / total_liquid_volume * m_tot
+
+        # 如果需要，按比例放大
+        scale_factor = 1.0
+        if m_tot_min > m_tot:
+            scale_factor = (m_tot_min / m_tot).magnitude
+            m_titration_90 *= scale_factor
+            m_titration_10 *= scale_factor
+            m_solvent_add *= scale_factor
+            m_solvent_titration *= scale_factor
+
+            # 更新二胺溶液用量
+            for sol in diamine_solutions:
+                sol["volume_needed"] *= scale_factor
+
+            # 更新固体二酐用量
+            for anhydride in solid_anhydride_masses:
+                anhydride["mass"] *= scale_factor
+
+            m_tot = m_tot_min
+
+        # 生成投料顺序
+        feeding_order = []
+
+        # 1. 固体二酐 (按顺序)
+        for anhydride in solid_anhydride_masses:
+            feeding_order.append({
+                "step": len(feeding_order) + 1,
+                "type": "solid_anhydride",
+                "name": anhydride["name"],
+                "amount": anhydride["mass"],
+                "order": anhydride["order"]
+            })
+
+        # 2. 二胺溶液 (按顺序)
+        for sol in diamine_solutions:
+            feeding_order.append({
+                "step": len(feeding_order) + 1,
+                "type": "diamine_solution",
+                "name": sol["name"],
+                "amount": sol["volume_needed"],
+                "order": sol["order"]
+            })
+
+        # 3. 主要二酐粉末
+        feeding_order.append({
+            "step": len(feeding_order) + 1,
+            "type": "main_anhydride",
+            "name": titration_name,
+            "amount": m_titration_90.magnitude,
+            "order": titration_anhydride[3]
+        })
+
+        # 4. 补加溶剂
+        if m_solvent_add > 0:
+            feeding_order.append({
+                "step": len(feeding_order) + 1,
+                "type": "additional_solvent",
+                "name": "溶剂",
+                "amount": m_solvent_add.magnitude,
+                "order": 999
+            })
+
+        # 5. 滴定二酐溶液
+        feeding_order.append({
+            "step": len(feeding_order) + 1,
+            "type": "titration_anhydride",
+            "name": f"{titration_name} 滴定液",
+            "amount": m_titration_10.magnitude,
+            "titration_solvent": m_solvent_titration.magnitude,
+            "order": titration_anhydride[3]
+        })
+
+        # 返回实验设计结果
+        results = {
+            "total_mass": m_tot.magnitude,
+            "scale_factor": scale_factor,
+            "solutions": diamine_solutions,
+            "solids": solid_anhydride_masses,
+            "titration": {
+                "name": titration_name,
+                "main_portion": m_titration_90.magnitude,
+                "titration_portion": m_titration_10.magnitude,
+                "titration_solvent": m_solvent_titration.magnitude,
+            },
+            "solvents": {
+                "additional_solvent": m_solvent_add.magnitude,
+                "total_liquid_volume": total_liquid_volume.magnitude
+            },
+            "feeding_order": feeding_order,
+            "minimum_required_mass": m_tot_min.magnitude
+        }
+
+        return results
+
     # 90%10%小瓶投料任务创建方法
     def create_90_10_vial_feeding_task(self,
                                        order_name: str = None,
@@ -961,6 +1312,108 @@ class BioyondDispensingStation(BioyondWorkstation):
             'actualVolume': actual_volume
         }
 
+    def _simplify_report(self, report) -> Dict[str, Any]:
+        """简化实验报告，只保留关键信息，去除冗余的工作流参数"""
+        if not isinstance(report, dict):
+            return report
+
+        data = report.get('data', {})
+        if not isinstance(data, dict):
+            return report
+
+        # 提取关键信息
+        simplified = {
+            'name': data.get('name'),
+            'code': data.get('code'),
+            'requester': data.get('requester'),
+            'workflowName': data.get('workflowName'),
+            'workflowStep': data.get('workflowStep'),
+            'requestTime': data.get('requestTime'),
+            'startPreparationTime': data.get('startPreparationTime'),
+            'completeTime': data.get('completeTime'),
+            'useTime': data.get('useTime'),
+            'status': data.get('status'),
+            'statusName': data.get('statusName'),
+        }
+
+        # 提取物料信息（简化版）
+        pre_intakes = data.get('preIntakes', [])
+        if pre_intakes and isinstance(pre_intakes, list):
+            first_intake = pre_intakes[0]
+            sample_materials = first_intake.get('sampleMaterials', [])
+
+            # 简化物料信息
+            simplified_materials = []
+            for material in sample_materials:
+                if isinstance(material, dict):
+                    mat_info = {
+                        'materialName': material.get('materialName'),
+                        'materialTypeName': material.get('materialTypeName'),
+                        'materialCode': material.get('materialCode'),
+                        'materialLocation': material.get('materialLocation'),
+                    }
+
+                    # 解析parameters中的关键信息（如密度、加料历史等）
+                    params_str = material.get('parameters', '{}')
+                    try:
+                        params = json.loads(params_str) if isinstance(params_str, str) else params_str
+                        if isinstance(params, dict):
+                            # 只保留关键参数
+                            if 'density' in params:
+                                mat_info['density'] = params['density']
+                            if 'feedingHistory' in params:
+                                mat_info['feedingHistory'] = params['feedingHistory']
+                            if 'liquidVolume' in params:
+                                mat_info['liquidVolume'] = params['liquidVolume']
+                            if 'm_diamine_tot' in params:
+                                mat_info['m_diamine_tot'] = params['m_diamine_tot']
+                            if 'wt_diamine' in params:
+                                mat_info['wt_diamine'] = params['wt_diamine']
+                    except:
+                        pass
+
+                    simplified_materials.append(mat_info)
+
+            simplified['sampleMaterials'] = simplified_materials
+
+            # 提取extraProperties中的实际值
+            extra_props = first_intake.get('extraProperties', {})
+            if isinstance(extra_props, dict):
+                simplified_extra = {}
+                for key, value in extra_props.items():
+                    try:
+                        parsed_value = json.loads(value) if isinstance(value, str) else value
+                        simplified_extra[key] = parsed_value
+                    except:
+                        simplified_extra[key] = value
+                simplified['extraProperties'] = simplified_extra
+
+        return {
+            'data': simplified,
+            'code': report.get('code'),
+            'message': report.get('message'),
+            'timestamp': report.get('timestamp')
+        }
+
+    def scheduler_start(self) -> dict:
+        """启动调度器 - 启动Bioyond工作站的任务调度器，开始执行队列中的任务
+
+        Returns:
+            dict: 包含return_info的字典，return_info为整型(1=成功)
+
+        Raises:
+            BioyondException: 调度器启动失败时抛出异常
+        """
+        result = self.hardware_interface.scheduler_start()
+        self.hardware_interface._logger.info(f"调度器启动结果: {result}")
+
+        if result != 1:
+            error_msg = "启动调度器失败: 有未处理错误，调度无法启动。请检查Bioyond系统状态。"
+            self.hardware_interface._logger.error(error_msg)
+            raise BioyondException(error_msg)
+
+        return {"return_info": result}
+
     # 等待多个任务完成并获取实验报告
     def wait_for_multiple_orders_and_get_reports(self,
                                                   batch_create_result: str = None,
@@ -1002,7 +1455,12 @@ class BioyondDispensingStation(BioyondWorkstation):
 
             # 验证batch_create_result参数
             if not batch_create_result or batch_create_result == "":
-                raise BioyondException("batch_create_result参数为空，请确保从batch_create节点正确连接handle")
+                raise BioyondException(
+                    "batch_create_result参数为空，请确保:\n"
+                    "1. batch_create节点与wait节点之间正确连接了handle\n"
+                    "2. batch_create节点成功执行并返回了结果\n"
+                    "3. 检查上游batch_create任务是否成功创建了订单"
+                )
 
             # 解析batch_create_result JSON对象
             try:
@@ -1031,7 +1489,17 @@ class BioyondDispensingStation(BioyondWorkstation):
 
             # 验证提取的数据
             if not order_codes:
-                raise BioyondException("batch_create_result中未找到order_codes字段或为空")
+                self.hardware_interface._logger.error(
+                    f"batch_create任务未生成任何订单。batch_create_result内容: {batch_create_result}"
+                )
+                raise BioyondException(
+                    "batch_create_result中未找到order_codes或为空。\n"
+                    "可能的原因:\n"
+                    "1. batch_create任务执行失败（检查任务是否报错）\n"
+                    "2. 物料配置问题（如'物料样品板分配失败'）\n"
+                    "3. Bioyond系统状态异常\n"
+                    f"请检查batch_create任务的执行结果"
+                )
             if not order_ids:
                 raise BioyondException("batch_create_result中未找到order_ids字段或为空")
 
@@ -1114,6 +1582,8 @@ class BioyondDispensingStation(BioyondWorkstation):
                                 self.hardware_interface._logger.info(
                                     f"成功获取任务 {order_code} 的实验报告"
                                 )
+                                # 简化报告，去除冗余信息
+                                report = self._simplify_report(report)
 
                             reports.append({
                                 "order_code": order_code,
@@ -1288,7 +1758,7 @@ class BioyondDispensingStation(BioyondWorkstation):
                 f"开始执行批量物料转移: {len(transfer_groups)}组任务 -> {target_device_id}"
             )
 
-            from .config import WAREHOUSE_MAPPING
+            warehouse_mapping = self.bioyond_config.get("warehouse_mapping", {})
             results = []
             successful_count = 0
             failed_count = 0

unilabos/devices/workstation/bioyond_studio/station.py

@@ -6,6 +6,7 @@ Bioyond Workstation Implementation
 """
 import time
 import traceback
+import threading
 from datetime import datetime
 from typing import Dict, Any, List, Optional, Union
 import json
@@ -23,12 +24,94 @@ from unilabos.ros.nodes.presets.workstation import ROS2WorkstationNode
 from unilabos.ros.msgs.message_converter import convert_to_ros_msg, Float64, String
 from pylabrobot.resources.resource import Resource as ResourcePLR
 
-from unilabos.devices.workstation.bioyond_studio.config import (
-    API_CONFIG, WORKFLOW_MAPPINGS, MATERIAL_TYPE_MAPPINGS, WAREHOUSE_MAPPING, HTTP_SERVICE_CONFIG
-)
+
 from unilabos.devices.workstation.workstation_http_service import WorkstationHTTPService
 
 
+class ConnectionMonitor:
+    """Bioyond连接监控器"""
+    def __init__(self, workstation, check_interval=30):
+        self.workstation = workstation
+        self.check_interval = check_interval
+        self._running = False
+        self._thread = None
+        self._last_status = "unknown"
+
+    def start(self):
+        if self._running:
+            return
+        self._running = True
+        self._thread = threading.Thread(target=self._monitor_loop, daemon=True, name="BioyondConnectionMonitor")
+        self._thread.start()
+        logger.info("Bioyond连接监控器已启动")
+
+    def stop(self):
+        self._running = False
+        if self._thread:
+            self._thread.join(timeout=2)
+            logger.info("Bioyond连接监控器已停止")
+
+    def _monitor_loop(self):
+        while self._running:
+            try:
+                # 使用 lightweight API 检查连接
+                # query_matial_type_list 是比较快的查询
+                start_time = time.time()
+                result = self.workstation.hardware_interface.material_type_list()
+
+                status = "online" if result else "offline"
+                msg = "Connection established" if status == "online" else "Failed to get material type list"
+
+                if status != self._last_status:
+                    logger.info(f"Bioyond连接状态变更: {self._last_status} -> {status}")
+                    self._publish_event(status, msg)
+                    self._last_status = status
+
+                # 发布心跳 (可选，或者只在状态变更时发布)
+                # self._publish_event(status, msg)
+
+            except Exception as e:
+                logger.error(f"Bioyond连接检查异常: {e}")
+                if self._last_status != "error":
+                    self._publish_event("error", str(e))
+                    self._last_status = "error"
+
+            time.sleep(self.check_interval)
+
+    def _publish_event(self, status, message):
+        try:
+            if hasattr(self.workstation, "_ros_node") and self.workstation._ros_node:
+                event_data = {
+                    "status": status,
+                    "message": message,
+                    "timestamp": datetime.now().isoformat()
+                }
+
+                # 动态发布消息，需要在 ROS2DeviceNode 中有对应支持
+                # 这里假设通用事件发布机制，使用 String 类型的 topic
+                # 话题: /<namespace>/events/device_status
+                ns = self.workstation._ros_node.namespace
+                topic = f"{ns}/events/device_status"
+
+                # 使用 ROS2DeviceNode 的发布功能
+                # 如果没有预定义的 publisher，需要动态创建
+                # 注意：workstation base node 可能没有自动创建 arbitrary publishers 的机制
+                # 这里我们先尝试用 String json 发布
+
+                # 在 ROS2DeviceNode 中通常需要先 create_publisher
+                # 为了简单起见，我们检查是否已有 publisher，没有则创建
+                if not hasattr(self.workstation, "_device_status_pub"):
+                    self.workstation._device_status_pub = self.workstation._ros_node.create_publisher(
+                        String, topic, 10
+                    )
+
+                self.workstation._device_status_pub.publish(
+                    convert_to_ros_msg(String, json.dumps(event_data, ensure_ascii=False))
+                )
+        except Exception as e:
+            logger.error(f"发布设备状态事件失败: {e}")
+
+
 class BioyondResourceSynchronizer(ResourceSynchronizer):
     """Bioyond资源同步器
 
@@ -174,9 +257,8 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
             else:
                 logger.info(f"[同步→Bioyond] ➕ 物料不存在于 Bioyond，将创建新物料并入库")
 
-            # 第1步：获取仓库配置
-            from .config import WAREHOUSE_MAPPING
-            warehouse_mapping = WAREHOUSE_MAPPING
+            # 第1步：从配置中获取仓库配置
+            warehouse_mapping = self.bioyond_config.get("warehouse_mapping", {})
 
             # 确定目标仓库名称
             parent_name = None
@@ -238,14 +320,20 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
             # 第2步：转换为 Bioyond 格式
             logger.info(f"[同步→Bioyond] 🔄 转换物料为 Bioyond 格式...")
 
-            # 导入物料默认参数配置
-            from .config import MATERIAL_DEFAULT_PARAMETERS
+            # 从配置中获取物料默认参数
+            material_default_params = self.workstation.bioyond_config.get("material_default_parameters", {})
+            material_type_params = self.workstation.bioyond_config.get("material_type_parameters", {})
+
+            # 合并参数配置：物料名称参数 + typeId参数（转换为 type:<uuid> 格式）
+            merged_params = material_default_params.copy()
+            for type_id, params in material_type_params.items():
+                merged_params[f"type:{type_id}"] = params
 
             bioyond_material = resource_plr_to_bioyond(
                 [resource],
                 type_mapping=self.workstation.bioyond_config["material_type_mappings"],
                 warehouse_mapping=self.workstation.bioyond_config["warehouse_mapping"],
-                material_params=MATERIAL_DEFAULT_PARAMETERS
+                material_params=merged_params
             )[0]
 
             logger.info(f"[同步→Bioyond] 🔧 准备覆盖locations字段，目标仓库: {parent_name}, 库位: {update_site}, UUID: {target_location_uuid[:8]}...")
@@ -468,13 +556,20 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
                 return material_bioyond_id
 
             # 转换为 Bioyond 格式
-            from .config import MATERIAL_DEFAULT_PARAMETERS
+            # 从配置中获取物料默认参数
+            material_default_params = self.workstation.bioyond_config.get("material_default_parameters", {})
+            material_type_params = self.workstation.bioyond_config.get("material_type_parameters", {})
+
+            # 合并参数配置：物料名称参数 + typeId参数（转换为 type:<uuid> 格式）
+            merged_params = material_default_params.copy()
+            for type_id, params in material_type_params.items():
+                merged_params[f"type:{type_id}"] = params
 
             bioyond_material = resource_plr_to_bioyond(
                 [resource],
                 type_mapping=self.workstation.bioyond_config["material_type_mappings"],
                 warehouse_mapping=self.workstation.bioyond_config["warehouse_mapping"],
-                material_params=MATERIAL_DEFAULT_PARAMETERS
+                material_params=merged_params
             )[0]
 
             # ⚠️ 关键：创建物料时不设置 locations，让 Bioyond 系统暂不分配库位
@@ -528,8 +623,7 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
             logger.info(f"[物料入库] 目标库位: {update_site}")
 
             # 获取仓库配置和目标库位 UUID
-            from .config import WAREHOUSE_MAPPING
-            warehouse_mapping = WAREHOUSE_MAPPING
+            warehouse_mapping = self.workstation.bioyond_config.get("warehouse_mapping", {})
 
             parent_name = None
             target_location_uuid = None
@@ -584,6 +678,44 @@ class BioyondWorkstation(WorkstationBase):
     集成Bioyond物料管理的工作站实现
     """
 
+    def _publish_task_status(
+        self,
+        task_id: str,
+        task_type: str,
+        status: str,
+        result: dict = None,
+        progress: float = 0.0,
+        task_code: str = None
+    ):
+        """发布任务状态事件"""
+        try:
+            if not getattr(self, "_ros_node", None):
+                return
+
+            event_data = {
+                "task_id": task_id,
+                "task_code": task_code,
+                "task_type": task_type,
+                "status": status,
+                "progress": progress,
+                "timestamp": datetime.now().isoformat()
+            }
+            if result:
+                event_data["result"] = result
+
+            topic = f"{self._ros_node.namespace}/events/task_status"
+
+            if not hasattr(self, "_task_status_pub"):
+                self._task_status_pub = self._ros_node.create_publisher(
+                    String, topic, 10
+                )
+
+            self._task_status_pub.publish(
+                convert_to_ros_msg(String, json.dumps(event_data, ensure_ascii=False))
+            )
+        except Exception as e:
+            logger.error(f"发布任务状态事件失败: {e}")
+
     def __init__(
         self,
         bioyond_config: Optional[Dict[str, Any]] = None,
@@ -605,10 +737,28 @@ class BioyondWorkstation(WorkstationBase):
             raise ValueError("Deck 配置不能为空，请在配置文件中添加正确的 deck 配置")
 
         # 初始化 warehouses 属性
-        self.deck.warehouses = {}
-        for resource in self.deck.children:
-            if isinstance(resource, WareHouse):
-                self.deck.warehouses[resource.name] = resource
+        if not hasattr(self.deck, "warehouses") or self.deck.warehouses is None:
+            self.deck.warehouses = {}
+
+        # 仅当 warehouses 为空时尝试重新扫描（避免覆盖子类的修复）
+        if not self.deck.warehouses:
+            for resource in self.deck.children:
+                # 兼容性增强: 只要是仓库类别或者是 WareHouse 实例均可
+                is_warehouse = isinstance(resource, WareHouse) or getattr(resource, "category", "") == "warehouse"
+
+                # 如果配置中有定义，也可以认定为 warehouse
+                if not is_warehouse and "warehouse_mapping" in bioyond_config:
+                    if resource.name in bioyond_config["warehouse_mapping"]:
+                        is_warehouse = True
+
+                if is_warehouse:
+                    self.deck.warehouses[resource.name] = resource
+                    # 确保 category 被正确设置，方便后续使用
+                    if getattr(resource, "category", "") != "warehouse":
+                        try:
+                            resource.category = "warehouse"
+                        except:
+                            pass
 
         # 创建通信模块
         self._create_communication_module(bioyond_config)
@@ -627,18 +777,22 @@ class BioyondWorkstation(WorkstationBase):
             self._set_workflow_mappings(bioyond_config["workflow_mappings"])
 
         # 准备 HTTP 报送接收服务配置（延迟到 post_init 启动）
-        # 从 bioyond_config 中获取，如果没有则使用 HTTP_SERVICE_CONFIG 的默认值
+        # 从 bioyond_config 中的 http_service_config 获取
+        http_service_cfg = bioyond_config.get("http_service_config", {})
         self._http_service_config = {
-            "host": bioyond_config.get("http_service_host", HTTP_SERVICE_CONFIG["http_service_host"]),
-            "port": bioyond_config.get("http_service_port", HTTP_SERVICE_CONFIG["http_service_port"])
+            "host": http_service_cfg.get("http_service_host", "127.0.0.1"),
+            "port": http_service_cfg.get("http_service_port", 8080)
         }
-        self.http_service = None  # 将在 post_init 中启动
+        self.http_service = None  # 将在 post_init 启动
+        self.connection_monitor = None # 将在 post_init 启动
 
         logger.info(f"Bioyond工作站初始化完成")
 
     def __del__(self):
         """析构函数：清理资源，停止 HTTP 服务"""
         try:
+            if hasattr(self, 'connection_monitor') and self.connection_monitor:
+                self.connection_monitor.stop()
             if hasattr(self, 'http_service') and self.http_service is not None:
                 logger.info("正在停止 HTTP 报送服务...")
                 self.http_service.stop()
@@ -648,6 +802,13 @@ class BioyondWorkstation(WorkstationBase):
     def post_init(self, ros_node: ROS2WorkstationNode):
         self._ros_node = ros_node
 
+        # 启动连接监控
+        try:
+            self.connection_monitor = ConnectionMonitor(self)
+            self.connection_monitor.start()
+        except Exception as e:
+            logger.error(f"启动连接监控失败: {e}")
+
         # 启动 HTTP 报送接收服务（现在 device_id 已可用）
         if hasattr(self, '_http_service_config'):
             try:
@@ -688,19 +849,14 @@ class BioyondWorkstation(WorkstationBase):
 
     def _create_communication_module(self, config: Optional[Dict[str, Any]] = None) -> None:
         """创建Bioyond通信模块"""
-        # 创建默认配置
-        default_config = {
-            **API_CONFIG,
-            "workflow_mappings": WORKFLOW_MAPPINGS,
-            "material_type_mappings": MATERIAL_TYPE_MAPPINGS,
-            "warehouse_mapping": WAREHOUSE_MAPPING
-        }
-
-        # 如果传入了 config，合并配置（config 中的值会覆盖默认值）
+        # 直接使用传入的配置，不再使用默认值
+        # 所有配置必须从 JSON 文件中提供
         if config:
-            self.bioyond_config = {**default_config, **config}
+            self.bioyond_config = config
         else:
-            self.bioyond_config = default_config
+            # 如果没有配置，使用空字典（会导致后续错误，但这是预期的）
+            self.bioyond_config = {}
+            print("警告: 未提供 bioyond_config，请确保在 JSON 配置文件中提供完整配置")
 
         self.hardware_interface = BioyondV1RPC(self.bioyond_config)
 
@@ -1014,7 +1170,15 @@ class BioyondWorkstation(WorkstationBase):
 
         workflow_id = self._get_workflow(actual_workflow_name)
         if workflow_id:
-            self.workflow_sequence.append(workflow_id)
+            # 兼容 BioyondReactionStation 中 workflow_sequence 被重写为 property 的情况
+            if isinstance(self.workflow_sequence, list):
+                self.workflow_sequence.append(workflow_id)
+            elif hasattr(self, "_cached_workflow_sequence") and isinstance(self._cached_workflow_sequence, list):
+                self._cached_workflow_sequence.append(workflow_id)
+            else:
+                print(f"❌ 无法添加工作流: workflow_sequence 类型错误 {type(self.workflow_sequence)}")
+                return False
+
             print(f"添加工作流到执行顺序: {actual_workflow_name} -> {workflow_id}")
             return True
         return False
@@ -1215,6 +1379,22 @@ class BioyondWorkstation(WorkstationBase):
             # TODO: 根据实际业务需求处理步骤完成逻辑
             # 例如：更新数据库、触发后续流程等
 
+            # 发布任务状态事件 (running/progress update)
+            self._publish_task_status(
+                task_id=data.get('orderCode'), # 使用 OrderCode 作为关联 ID
+                task_code=data.get('orderCode'),
+                task_type="bioyond_step",
+                status="running",
+                progress=0.5, # 步骤完成视为任务进行中
+                result={"step_name": data.get('stepName'), "step_id": data.get('stepId')}
+            )
+
+            # 更新物料信息
+            # 步骤完成后，物料状态可能发生变化（如位置、用量等），触发同步
+            logger.info(f"[步骤完成报送] 触发物料同步...")
+            self.resource_synchronizer.sync_from_external()
+
+
             return {
                 "processed": True,
                 "step_id": data.get('stepId'),
@@ -1249,6 +1429,17 @@ class BioyondWorkstation(WorkstationBase):
 
             # TODO: 根据实际业务需求处理通量完成逻辑
 
+            # 发布任务状态事件
+            self._publish_task_status(
+                task_id=data.get('orderCode'),
+                task_code=data.get('orderCode'),
+                task_type="bioyond_sample",
+                status="running",
+                progress=0.7,
+                result={"sample_id": data.get('sampleId'), "status": status_desc}
+            )
+
+
             return {
                 "processed": True,
                 "sample_id": data.get('sampleId'),
@@ -1288,6 +1479,32 @@ class BioyondWorkstation(WorkstationBase):
             # TODO: 根据实际业务需求处理任务完成逻辑
             # 例如：更新物料库存、生成报表等
 
+            # 映射状态到事件状态
+            event_status = "completed"
+            if str(data.get('status')) in ["-11", "-12"]:
+                event_status = "error"
+            elif str(data.get('status')) == "30":
+                event_status = "completed"
+            else:
+                event_status = "running" # 其他状态视为运行中（或根据实际定义）
+
+            # 发布任务状态事件
+            self._publish_task_status(
+                task_id=data.get('orderCode'),
+                task_code=data.get('orderCode'),
+                task_type="bioyond_order",
+                status=event_status,
+                progress=1.0 if event_status in ["completed", "error"] else 0.9,
+                result={"order_name": data.get('orderName'), "status": status_desc, "materials_count": len(used_materials)}
+            )
+
+            # 更新物料信息
+            # 任务完成后，且状态为完成时，触发同步以更新最终物料状态
+            if event_status == "completed":
+                logger.info(f"[任务完成报送] 触发物料同步...")
+                self.resource_synchronizer.sync_from_external()
+
+
             return {
                 "processed": True,
                 "order_code": data.get('orderCode'),

unilabos/devices/workstation/workstation_http_service.py

@@ -459,12 +459,12 @@ class WorkstationHTTPHandler(BaseHTTPRequestHandler):
             # 验证必需字段
             if 'brand' in request_data:
                 if request_data['brand'] == "bioyond":  # 奔曜
-                    error_msg = request_data["text"]
-                    logger.info(f"收到奔曜错误处理报送: {error_msg}")
+                    material_data = request_data["text"]
+                    logger.info(f"收到奔曜物料变更报送: {material_data}")
                     return HttpResponse(
                         success=True,
-                        message=f"错误处理报送已收到: {error_msg}",
-                        acknowledgment_id=f"ERROR_{int(time.time() * 1000)}_{error_msg.get('action_id', 'unknown')}",
+                        message=f"物料变更报送已收到: {material_data}",
+                        acknowledgment_id=f"MATERIAL_{int(time.time() * 1000)}_{material_data.get('id', 'unknown')}",
                         data=None
                     )
             else:

unilabos/registry/devices/bioyond_dispensing_station.yaml

@@ -5,229 +5,6 @@ bioyond_dispensing_station:
   - bioyond_dispensing_station
   class:
     action_value_mappings:
-      auto-brief_step_parameters:
-        feedback: {}
-        goal: {}
-        goal_default:
-          data: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                data:
-                  type: object
-              required:
-              - data
-              type: object
-            result: {}
-          required:
-          - goal
-          title: brief_step_parameters参数
-          type: object
-        type: UniLabJsonCommand
-      auto-compute_experiment_design:
-        feedback: {}
-        goal: {}
-        goal_default:
-          m_tot: '70'
-          ratio: null
-          titration_percent: '0.03'
-          wt_percent: '0.25'
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                m_tot:
-                  default: '70'
-                  type: string
-                ratio:
-                  type: object
-                titration_percent:
-                  default: '0.03'
-                  type: string
-                wt_percent:
-                  default: '0.25'
-                  type: string
-              required:
-              - ratio
-              type: object
-            result:
-              properties:
-                feeding_order:
-                  items: {}
-                  title: Feeding Order
-                  type: array
-                return_info:
-                  title: Return Info
-                  type: string
-                solutions:
-                  items: {}
-                  title: Solutions
-                  type: array
-                solvents:
-                  additionalProperties: true
-                  title: Solvents
-                  type: object
-                titration:
-                  additionalProperties: true
-                  title: Titration
-                  type: object
-              required:
-              - solutions
-              - titration
-              - solvents
-              - feeding_order
-              - return_info
-              title: ComputeExperimentDesignReturn
-              type: object
-          required:
-          - goal
-          title: compute_experiment_design参数
-          type: object
-        type: UniLabJsonCommand
-      auto-process_order_finish_report:
-        feedback: {}
-        goal: {}
-        goal_default:
-          report_request: null
-          used_materials: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                report_request:
-                  type: string
-                used_materials:
-                  type: string
-              required:
-              - report_request
-              - used_materials
-              type: object
-            result: {}
-          required:
-          - goal
-          title: process_order_finish_report参数
-          type: object
-        type: UniLabJsonCommand
-      auto-project_order_report:
-        feedback: {}
-        goal: {}
-        goal_default:
-          order_id: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                order_id:
-                  type: string
-              required:
-              - order_id
-              type: object
-            result: {}
-          required:
-          - goal
-          title: project_order_report参数
-          type: object
-        type: UniLabJsonCommand
-      auto-query_resource_by_name:
-        feedback: {}
-        goal: {}
-        goal_default:
-          material_name: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                material_name:
-                  type: string
-              required:
-              - material_name
-              type: object
-            result: {}
-          required:
-          - goal
-          title: query_resource_by_name参数
-          type: object
-        type: UniLabJsonCommand
-      auto-transfer_materials_to_reaction_station:
-        feedback: {}
-        goal: {}
-        goal_default:
-          target_device_id: null
-          transfer_groups: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                target_device_id:
-                  type: string
-                transfer_groups:
-                  type: array
-              required:
-              - target_device_id
-              - transfer_groups
-              type: object
-            result: {}
-          required:
-          - goal
-          title: transfer_materials_to_reaction_station参数
-          type: object
-        type: UniLabJsonCommand
-      auto-workflow_sample_locations:
-        feedback: {}
-        goal: {}
-        goal_default:
-          workflow_id: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                workflow_id:
-                  type: string
-              required:
-              - workflow_id
-              type: object
-            result: {}
-          required:
-          - goal
-          title: workflow_sample_locations参数
-          type: object
-        type: UniLabJsonCommand
       batch_create_90_10_vial_feeding_tasks:
         feedback: {}
         goal:
@@ -394,6 +171,99 @@ bioyond_dispensing_station:
           title: BatchCreateDiamineSolutionTasks
           type: object
         type: UniLabJsonCommand
+      compute_experiment_design:
+        feedback: {}
+        goal:
+          m_tot: m_tot
+          ratio: ratio
+          titration_percent: titration_percent
+          wt_percent: wt_percent
+        goal_default:
+          m_tot: '70'
+          ratio: ''
+          titration_percent: '0.03'
+          wt_percent: '0.25'
+        handles:
+          output:
+          - data_key: solutions
+            data_source: executor
+            data_type: array
+            handler_key: solutions
+            io_type: sink
+            label: Solution Data From Python
+          - data_key: titration
+            data_source: executor
+            data_type: object
+            handler_key: titration
+            io_type: sink
+            label: Titration Data From Calculation Node
+          - data_key: solvents
+            data_source: executor
+            data_type: object
+            handler_key: solvents
+            io_type: sink
+            label: Solvents Data From Calculation Node
+          - data_key: feeding_order
+            data_source: executor
+            data_type: array
+            handler_key: feeding_order
+            io_type: sink
+            label: Feeding Order Data From Calculation Node
+        result:
+          feeding_order: feeding_order
+          return_info: return_info
+          solutions: solutions
+          solvents: solvents
+          titration: titration
+        schema:
+          description: 计算实验设计，输出solutions/titration/solvents/feeding_order用于后续节点。
+          properties:
+            feedback: {}
+            goal:
+              properties:
+                m_tot:
+                  default: '70'
+                  description: 总质量(g)
+                  type: string
+                ratio:
+                  description: 组分摩尔比的对象，保持输入顺序，如{"MDA":1,"BTDA":1}
+                  type: string
+                titration_percent:
+                  default: '0.03'
+                  description: 滴定比例(10%部分)
+                  type: string
+                wt_percent:
+                  default: '0.25'
+                  description: 目标固含质量分数
+                  type: string
+              required:
+              - ratio
+              type: object
+            result:
+              properties:
+                feeding_order:
+                  type: array
+                return_info:
+                  type: string
+                solutions:
+                  type: array
+                solvents:
+                  type: object
+                titration:
+                  type: object
+              required:
+              - solutions
+              - titration
+              - solvents
+              - feeding_order
+              - return_info
+              title: ComputeExperimentDesign_Result
+              type: object
+          required:
+          - goal
+          title: ComputeExperimentDesign
+          type: object
+        type: UniLabJsonCommand
       create_90_10_vial_feeding_task:
         feedback: {}
         goal:
@@ -620,6 +490,89 @@ bioyond_dispensing_station:
           title: DispenStationSolnPrep
           type: object
         type: DispenStationSolnPrep
+      scheduler_start:
+        feedback: {}
+        goal: {}
+        goal_default: {}
+        handles: {}
+        result:
+          return_info: return_info
+        schema:
+          description: 启动调度器 - 启动Bioyond配液站的任务调度器，开始执行队列中的任务
+          properties:
+            feedback: {}
+            goal:
+              properties: {}
+              required: []
+              type: object
+            result:
+              properties:
+                return_info:
+                  description: 调度器启动结果，成功返回1，失败返回0
+                  type: integer
+              required:
+              - return_info
+              title: scheduler_start结果
+              type: object
+          required:
+          - goal
+          title: scheduler_start参数
+          type: object
+        type: UniLabJsonCommand
+      transfer_materials_to_reaction_station:
+        feedback: {}
+        goal:
+          target_device_id: target_device_id
+          transfer_groups: transfer_groups
+        goal_default:
+          target_device_id: ''
+          transfer_groups: ''
+        handles: {}
+        placeholder_keys:
+          target_device_id: unilabos_devices
+        result: {}
+        schema:
+          description: 将配液站完成的物料（溶液、样品等）转移到指定反应站的堆栈库位。支持配置多组转移任务，每组包含物料名称、目标堆栈和目标库位。
+          properties:
+            feedback: {}
+            goal:
+              properties:
+                target_device_id:
+                  description: 目标反应站设备ID（从设备列表中选择，所有转移组都使用同一个目标设备）
+                  type: string
+                transfer_groups:
+                  description: 转移任务组列表，每组包含物料名称、目标堆栈和目标库位，可以添加多组
+                  items:
+                    properties:
+                      materials:
+                        description: 物料名称（手动输入，系统将通过RPC查询验证）
+                        type: string
+                      target_sites:
+                        description: 目标库位（手动输入，如"A01"）
+                        type: string
+                      target_stack:
+                        description: 目标堆栈名称（从列表选择）
+                        enum:
+                        - 堆栈1左
+                        - 堆栈1右
+                        - 站内试剂存放堆栈
+                        type: string
+                    required:
+                    - materials
+                    - target_stack
+                    - target_sites
+                    type: object
+                  type: array
+              required:
+              - target_device_id
+              - transfer_groups
+              type: object
+            result: {}
+          required:
+          - goal
+          title: transfer_materials_to_reaction_station参数
+          type: object
+        type: UniLabJsonCommand
       wait_for_multiple_orders_and_get_reports:
         feedback: {}
         goal:
@@ -688,7 +641,7 @@ bioyond_dispensing_station:
           title: WaitForMultipleOrdersAndGetReports
           type: object
         type: UniLabJsonCommand
-    module: unilabos.devices.workstation.bioyond_studio.dispensing_station:BioyondDispensingStation
+    module: unilabos.devices.workstation.bioyond_studio.dispensing_station.dispensing_station:BioyondDispensingStation
     status_types: {}
     type: python
   config_info: []
@@ -699,15 +652,16 @@ bioyond_dispensing_station:
     config:
       properties:
         config:
-          type: string
+          type: object
         deck:
           type: string
-      required:
-      - config
-      - deck
+        protocol_type:
+          type: string
+      required: []
       type: object
     data:
       properties: {}
       required: []
       type: object
+  model: {}
   version: 1.0.0

unilabos/registry/devices/liquid_handler.yaml

@@ -9278,7 +9278,13 @@ liquid_handler.prcxi:
                 z: 0.0
             sample_id: ''
             type: ''
-        handles: {}
+        handles:
+          input:
+          - data_key: wells
+            data_source: handle
+            data_type: resource
+            handler_key: input_wells
+            label: InputWells
         placeholder_keys:
           wells: unilabos_resources
         result: {}
@@ -9737,7 +9743,34 @@ liquid_handler.prcxi:
           touch_tip: false
           use_channels:
           - 0
-        handles: {}
+        handles:
+          input:
+          - data_key: liquid
+            data_source: handle
+            data_type: resource
+            handler_key: sources
+            label: sources
+          - data_key: liquid
+            data_source: executor
+            data_type: resource
+            handler_key: targets
+            label: targets
+          - data_key: liquid
+            data_source: executor
+            data_type: resource
+            handler_key: tip_rack
+            label: tip_rack
+          output:
+          - data_key: liquid
+            data_source: handle
+            data_type: resource
+            handler_key: sources_out
+            label: sources
+          - data_key: liquid
+            data_source: executor
+            data_type: resource
+            handler_key: targets_out
+            label: targets
         placeholder_keys:
           sources: unilabos_resources
           targets: unilabos_resources

unilabos/registry/devices/reaction_station_bioyond.yaml

@@ -4,213 +4,88 @@ reaction_station.bioyond:
   - reaction_station_bioyond
   class:
     action_value_mappings:
-      auto-create_order:
+      add_time_constraint:
         feedback: {}
-        goal: {}
+        goal:
+          duration: duration
+          end_point: end_point
+          end_step_key: end_step_key
+          start_point: start_point
+          start_step_key: start_step_key
         goal_default:
-          json_str: null
+          duration: 0
+          end_point: 0
+          end_step_key: ''
+          start_point: 0
+          start_step_key: ''
         handles: {}
-        placeholder_keys: {}
         result: {}
         schema:
-          description: ''
+          description: 添加时间约束 - 在两个工作流之间添加时间约束
           properties:
             feedback: {}
             goal:
               properties:
-                json_str:
-                  type: string
-              required:
-              - json_str
-              type: object
-            result: {}
-          required:
-          - goal
-          title: create_order参数
-          type: object
-        type: UniLabJsonCommand
-      auto-hard_delete_merged_workflows:
-        feedback: {}
-        goal: {}
-        goal_default:
-          workflow_ids: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                workflow_ids:
-                  items:
-                    type: string
-                  type: array
-              required:
-              - workflow_ids
-              type: object
-            result: {}
-          required:
-          - goal
-          title: hard_delete_merged_workflows参数
-          type: object
-        type: UniLabJsonCommand
-      auto-merge_workflow_with_parameters:
-        feedback: {}
-        goal: {}
-        goal_default:
-          json_str: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                json_str:
-                  type: string
-              required:
-              - json_str
-              type: object
-            result: {}
-          required:
-          - goal
-          title: merge_workflow_with_parameters参数
-          type: object
-        type: UniLabJsonCommand
-      auto-process_temperature_cutoff_report:
-        feedback: {}
-        goal: {}
-        goal_default:
-          report_request: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                report_request:
-                  type: string
-              required:
-              - report_request
-              type: object
-            result: {}
-          required:
-          - goal
-          title: process_temperature_cutoff_report参数
-          type: object
-        type: UniLabJsonCommand
-      auto-process_web_workflows:
-        feedback: {}
-        goal: {}
-        goal_default:
-          web_workflow_json: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                web_workflow_json:
-                  type: string
-              required:
-              - web_workflow_json
-              type: object
-            result: {}
-          required:
-          - goal
-          title: process_web_workflows参数
-          type: object
-        type: UniLabJsonCommand
-      auto-skip_titration_steps:
-        feedback: {}
-        goal: {}
-        goal_default:
-          preintake_id: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                preintake_id:
-                  type: string
-              required:
-              - preintake_id
-              type: object
-            result: {}
-          required:
-          - goal
-          title: skip_titration_steps参数
-          type: object
-        type: UniLabJsonCommand
-      auto-wait_for_multiple_orders_and_get_reports:
-        feedback: {}
-        goal: {}
-        goal_default:
-          batch_create_result: null
-          check_interval: 10
-          timeout: 7200
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                batch_create_result:
-                  type: string
-                check_interval:
-                  default: 10
-                  type: integer
-                timeout:
-                  default: 7200
+                duration:
+                  description: 时间(秒)
                   type: integer
+                end_point:
+                  default: Start
+                  description: 终点计时点 (Start=开始前, End=结束后)
+                  enum:
+                  - Start
+                  - End
+                  type: string
+                end_step_key:
+                  description: 终点步骤Key (可选, 默认为空则自动选择)
+                  type: string
+                start_point:
+                  default: Start
+                  description: 起点计时点 (Start=开始前, End=结束后)
+                  enum:
+                  - Start
+                  - End
+                  type: string
+                start_step_key:
+                  description: 起点步骤Key (例如 "feeding", "liquid", 可选, 默认为空则自动选择)
+                  type: string
+              required:
+              - duration
+              type: object
+            result: {}
+          required:
+          - goal
+          title: add_time_constraint参数
+          type: object
+        type: UniLabJsonCommand
+      clean_all_server_workflows:
+        feedback: {}
+        goal: {}
+        goal_default: {}
+        handles: {}
+        result:
+          code: code
+          message: message
+        schema:
+          description: 清空服务端所有非核心工作流 (保留核心流程)
+          properties:
+            feedback: {}
+            goal:
+              properties: {}
               required: []
               type: object
-            result: {}
-          required:
-          - goal
-          title: wait_for_multiple_orders_and_get_reports参数
-          type: object
-        type: UniLabJsonCommand
-      auto-workflow_step_query:
-        feedback: {}
-        goal: {}
-        goal_default:
-          workflow_id: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
+            result:
               properties:
-                workflow_id:
+                code:
+                  description: 操作结果代码(1表示成功)
+                  type: integer
+                message:
+                  description: 结果描述
                   type: string
-              required:
-              - workflow_id
               type: object
-            result: {}
           required:
           - goal
-          title: workflow_step_query参数
+          title: clean_all_server_workflows参数
           type: object
         type: UniLabJsonCommand
       drip_back:
@@ -247,13 +122,19 @@ reaction_station.bioyond:
                   description: 观察时间(分钟)
                   type: string
                 titration_type:
-                  description: 是否滴定(1=否, 2=是)
+                  description: 是否滴定(NO=否, YES=是)
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
                 torque_variation:
-                  description: 是否观察 (1=否, 2=是)
+                  description: 是否观察 (NO=否, YES=是)
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
                 volume:
-                  description: 分液公式(μL)
+                  description: 分液公式(mL)
                   type: string
               required:
               - volume
@@ -353,13 +234,19 @@ reaction_station.bioyond:
                   description: 观察时间(分钟)
                   type: string
                 titration_type:
-                  description: 是否滴定(1=否, 2=是)
+                  description: 是否滴定(NO=否, YES=是)
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
                 torque_variation:
-                  description: 是否观察 (1=否, 2=是)
+                  description: 是否观察 (NO=否, YES=是)
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
                 volume:
-                  description: 分液公式(μL)
+                  description: 分液公式(mL)
                   type: string
               required:
               - volume
@@ -403,7 +290,7 @@ reaction_station.bioyond:
             label: Solvents Data From Calculation Node
         result: {}
         schema:
-          description: 液体投料-溶剂。可以直接提供volume(μL),或通过solvents对象自动从additional_solvent(mL)计算volume。
+          description: 液体投料-溶剂。可以直接提供volume(mL),或通过solvents对象自动从additional_solvent(mL)计算volume。
           properties:
             feedback: {}
             goal:
@@ -423,15 +310,21 @@ reaction_station.bioyond:
                   description: 观察时间(分钟),默认360
                   type: string
                 titration_type:
-                  default: '1'
-                  description: 是否滴定(1=否, 2=是),默认1
+                  default: 'NO'
+                  description: 是否滴定(NO=否, YES=是),默认NO
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
                 torque_variation:
-                  default: '2'
-                  description: 是否观察 (1=否, 2=是),默认2
+                  default: 'YES'
+                  description: 是否观察 (NO=否, YES=是),默认YES
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
                 volume:
-                  description: 分液量(μL)。可直接提供,或通过solvents参数自动计算
+                  description: 分液量(mL)。可直接提供,或通过solvents参数自动计算
                   type: string
               required:
               - assign_material_name
@@ -504,15 +397,21 @@ reaction_station.bioyond:
                   description: 观察时间(分钟),默认90
                   type: string
                 titration_type:
-                  default: '2'
-                  description: 是否滴定(1=否, 2=是),默认2
+                  default: 'YES'
+                  description: 是否滴定(NO=否, YES=是),默认YES
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
                 torque_variation:
-                  default: '2'
-                  description: 是否观察 (1=否, 2=是),默认2
+                  default: 'YES'
+                  description: 是否观察 (NO=否, YES=是),默认YES
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
                 volume_formula:
-                  description: 分液公式(μL)。可直接提供固定公式,或留空由系统根据x_value、feeding_order_data、extracted_actuals自动生成
+                  description: 分液公式(mL)。可直接提供固定公式,或留空由系统根据x_value、feeding_order_data、extracted_actuals自动生成
                   type: string
                 x_value:
                   description: 公式中的x值,手工输入,格式为"{{1-2-3}}"(包含双花括号)。用于自动公式计算
@@ -560,13 +459,19 @@ reaction_station.bioyond:
                   description: 观察时间(分钟)
                   type: string
                 titration_type:
-                  description: 是否滴定(1=否, 2=是)
+                  description: 是否滴定(NO=否, YES=是)
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
                 torque_variation:
-                  description: 是否观察 (1=否, 2=是)
+                  description: 是否观察 (NO=否, YES=是)
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
                 volume_formula:
-                  description: 分液公式(μL)
+                  description: 分液公式(mL)
                   type: string
               required:
               - volume_formula
@@ -680,6 +585,35 @@ reaction_station.bioyond:
           title: reactor_taken_out参数
           type: object
         type: UniLabJsonCommand
+      scheduler_start:
+        feedback: {}
+        goal: {}
+        goal_default: {}
+        handles: {}
+        result:
+          return_info: return_info
+        schema:
+          description: 启动调度器 - 启动Bioyond工作站的任务调度器，开始执行队列中的任务
+          properties:
+            feedback: {}
+            goal:
+              properties: {}
+              required: []
+              type: object
+            result:
+              properties:
+                return_info:
+                  description: 调度器启动结果，成功返回1，失败返回0
+                  type: integer
+              required:
+              - return_info
+              title: scheduler_start结果
+              type: object
+          required:
+          - goal
+          title: scheduler_start参数
+          type: object
+        type: UniLabJsonCommand
       solid_feeding_vials:
         feedback: {}
         goal:
@@ -706,7 +640,11 @@ reaction_station.bioyond:
                   description: 物料名称(用于获取试剂瓶位ID)
                   type: string
                 material_id:
-                  description: 粉末类型ID，1=盐（21分钟），2=面粉（27分钟），3=BTDA（38分钟）
+                  description: 粉末类型ID，Salt=盐（21分钟），Flour=面粉（27分钟），BTDA=BTDA（38分钟）
+                  enum:
+                  - Salt
+                  - Flour
+                  - BTDA
                   type: string
                 temperature:
                   description: 温度设定(°C)
@@ -715,7 +653,10 @@ reaction_station.bioyond:
                   description: 观察时间(分钟)
                   type: string
                 torque_variation:
-                  description: 是否观察 (1=否, 2=是)
+                  description: 是否观察 (NO=否, YES=是)
+                  enum:
+                  - 'NO'
+                  - 'YES'
                   type: string
               required:
               - assign_material_name
@@ -730,9 +671,19 @@ reaction_station.bioyond:
           title: solid_feeding_vials参数
           type: object
         type: UniLabJsonCommand
-    module: unilabos.devices.workstation.bioyond_studio.reaction_station:BioyondReactionStation
+    module: unilabos.devices.workstation.bioyond_studio.reaction_station.reaction_station:BioyondReactionStation
     protocol_type: []
     status_types:
+      average_viscosity: Float64
+      force: Float64
+      in_temperature: Float64
+      out_temperature: Float64
+      pt100_temperature: Float64
+      sensor_average_temperature: Float64
+      setting_temperature: Float64
+      speed: Float64
+      target_temperature: Float64
+      viscosity: Float64
       workflow_sequence: String
     type: python
   config_info: []
@@ -765,34 +716,19 @@ reaction_station.reactor:
   - reactor
   - reaction_station_bioyond
   class:
-    action_value_mappings:
-      auto-update_metrics:
-        feedback: {}
-        goal: {}
-        goal_default:
-          payload: null
-        handles: {}
-        placeholder_keys: {}
-        result: {}
-        schema:
-          description: ''
-          properties:
-            feedback: {}
-            goal:
-              properties:
-                payload:
-                  type: object
-              required:
-              - payload
-              type: object
-            result: {}
-          required:
-          - goal
-          title: update_metrics参数
-          type: object
-        type: UniLabJsonCommand
-    module: unilabos.devices.workstation.bioyond_studio.reaction_station:BioyondReactor
-    status_types: {}
+    action_value_mappings: {}
+    module: unilabos.devices.workstation.bioyond_studio.reaction_station.reaction_station:BioyondReactor
+    status_types:
+      average_viscosity: Float64
+      force: Float64
+      in_temperature: Float64
+      out_temperature: Float64
+      pt100_temperature: Float64
+      sensor_average_temperature: Float64
+      setting_temperature: Float64
+      speed: Float64
+      target_temperature: Float64
+      viscosity: Float64
     type: python
   config_info: []
   description: 反应站子设备-反应器

unilabos/registry/registry.py

@@ -124,11 +124,25 @@ class Registry:
                                     "output": [
                                         {
                                             "handler_key": "labware",
-                                            "label": "Labware",
                                             "data_type": "resource",
-                                            "data_source": "handle",
-                                            "data_key": "liquid",
-                                        }
+                                            "label": "Labware",
+                                            "data_source": "executor",
+                                            "data_key": "created_resource_tree.@flatten",
+                                        },
+                                        {
+                                            "handler_key": "liquid_slots",
+                                            "data_type": "resource",
+                                            "label": "LiquidSlots",
+                                            "data_source": "executor",
+                                            "data_key": "liquid_input_resource_tree.@flatten",
+                                        },
+                                        {
+                                            "handler_key": "materials",
+                                            "data_type": "resource",
+                                            "label": "AllMaterials",
+                                            "data_source": "executor",
+                                            "data_key": "[created_resource_tree,liquid_input_resource_tree].@flatten.@flatten",
+                                        },
                                     ]
                                 },
                                 "placeholder_keys": {
@@ -186,7 +200,17 @@ class Registry:
                                     "resources": "unilabos_resources",
                                 },
                                 "goal_default": {},
-                                "handles": {},
+                                "handles": {
+                                    "input": [
+                                        {
+                                            "handler_key": "input_resources",
+                                            "data_type": "resource",
+                                            "label": "InputResources",
+                                            "data_source": "handle",
+                                            "data_key": "resources",  # 不为空
+                                        },
+                                    ]
+                                },
                             },
                         },
                     },
@@ -222,7 +246,7 @@ class Registry:
         abs_path = Path(path).absolute()
         resource_path = abs_path / "resources"
         files = list(resource_path.glob("*/*.yaml"))
-        logger.debug(f"[UniLab Registry] resources: {resource_path.exists()}, total: {len(files)}")
+        logger.trace(f"[UniLab Registry] load resources? {resource_path.exists()}, total: {len(files)}")
         current_resource_number = len(self.resource_type_registry) + 1
         for i, file in enumerate(files):
             with open(file, encoding="utf-8", mode="r") as f:

unilabos/registry/resources/bioyond/bottles.yaml

@@ -20,6 +20,17 @@ BIOYOND_PolymerStation_Liquid_Vial:
   icon: ''
   init_param_schema: {}
   version: 1.0.0
+BIOYOND_PolymerStation_Measurement_Vial:
+  category:
+  - bottles
+  class:
+    module: unilabos.resources.bioyond.bottles:BIOYOND_PolymerStation_Measurement_Vial
+    type: pylabrobot
+  description: 聚合站-测量小瓶（测密度）
+  handles: []
+  icon: ''
+  init_param_schema: {}
+  version: 1.0.0
 BIOYOND_PolymerStation_Reactor:
   category:
   - bottles

unilabos/resources/bioyond/bottles.py

@@ -193,3 +193,20 @@ def BIOYOND_PolymerStation_Flask(
         barcode=barcode,
         model="BIOYOND_PolymerStation_Flask",
     )
+
+def BIOYOND_PolymerStation_Measurement_Vial(
+    name: str,
+    diameter: float = 25.0,
+    height: float = 60.0,
+    max_volume: float = 20000.0,  # 20mL
+    barcode: str = None,
+) -> Bottle:
+    """创建测量小瓶"""
+    return Bottle(
+        name=name,
+        diameter=diameter,
+        height=height,
+        max_volume=max_volume,
+        barcode=barcode,
+        model="BIOYOND_PolymerStation_Measurement_Vial",
+    )

unilabos/resources/bioyond/decks.py

@@ -49,20 +49,17 @@ class BIOYOND_PolymerReactionStation_Deck(Deck):
             "测量小瓶仓库(测密度)": bioyond_warehouse_density_vial("测量小瓶仓库(测密度)"),  # A01～B03
         }
         self.warehouse_locations = {
-            "堆栈1左": Coordinate(0.0, 430.0, 0.0),  # 左侧位置
-            "堆栈1右": Coordinate(2500.0, 430.0, 0.0),  # 右侧位置
-            "站内试剂存放堆栈": Coordinate(640.0, 480.0, 0.0),
+            "堆栈1左": Coordinate(-200.0, 450.0, 0.0),  # 左侧位置
+            "堆栈1右": Coordinate(2350.0, 450.0, 0.0),  # 右侧位置
+            "站内试剂存放堆栈": Coordinate(730.0, 390.0, 0.0),
             # "移液站内10%分装液体准备仓库": Coordinate(1200.0, 600.0, 0.0),
             "站内Tip盒堆栈": Coordinate(300.0, 150.0, 0.0),
-            "测量小瓶仓库(测密度)": Coordinate(922.0, 552.0, 0.0),
+            "测量小瓶仓库(测密度)": Coordinate(940.0, 530.0, 0.0),
         }
-        self.warehouses["站内试剂存放堆栈"].rotation = Rotation(z=90)
-        self.warehouses["测量小瓶仓库(测密度)"].rotation = Rotation(z=270)
 
         for warehouse_name, warehouse in self.warehouses.items():
             self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
 
-
 class BIOYOND_PolymerPreparationStation_Deck(Deck):
     def __init__(
         self,
@@ -144,6 +141,7 @@ class BIOYOND_YB_Deck(Deck):
 
         for warehouse_name, warehouse in self.warehouses.items():
             self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
+
 def YB_Deck(name: str) -> Deck:
     by=BIOYOND_YB_Deck(name=name)
     by.setup()

unilabos/resources/bioyond/warehouses.py

@@ -46,41 +46,55 @@ def bioyond_warehouse_1x4x4_right(name: str) -> WareHouse:
     )
 
 def bioyond_warehouse_density_vial(name: str) -> WareHouse:
-    """创建测量小瓶仓库(测密度) A01～B03"""
+    """创建测量小瓶仓库(测密度) - 竖向排列2列3行
+    布局（从下到上，从左到右）：
+    | A03 | B03 |  ← 顶部
+    | A02 | B02 |  ← 中部
+    | A01 | B01 |  ← 底部
+    """
     return warehouse_factory(
         name=name,
-        num_items_x=3,  # 3列（01-03）
-        num_items_y=2,  # 2行（A-B）
+        num_items_x=2,  # 2列（A, B）
+        num_items_y=3,  # 3行（01-03，从下到上）
         num_items_z=1,  # 1层
         dx=10.0,
         dy=10.0,
         dz=10.0,
-        item_dx=40.0,
-        item_dy=40.0,
+        item_dx=40.0,  # 列间距（A到B的横向距离）
+        item_dy=40.0,  # 行间距（01到02到03的竖向距离）
         item_dz=50.0,
-        # 用更小的 resource_size 来表现 "小点的孔位"
+        # ⭐ 竖向warehouse：槽位尺寸也是竖向的（小瓶已经是正方形，无需调整）
         resource_size_x=30.0,
         resource_size_y=30.0,
         resource_size_z=12.0,
         category="warehouse",
         col_offset=0,
-        layout="row-major",
+        layout="vertical-col-major",  # ⭐ 竖向warehouse专用布局
     )
 
 def bioyond_warehouse_reagent_storage(name: str) -> WareHouse:
-    """创建BioYond站内试剂存放堆栈（A01～A02, 1行×2列）"""
+    """创建BioYond站内试剂存放堆栈 - 竖向排列1列2行
+    布局（竖向，从下到上）：
+    | A02 |  ← 顶部
+    | A01 |  ← 底部
+    """
     return warehouse_factory(
         name=name,
-        num_items_x=2,  # 2列（01-02）
-        num_items_y=1,  # 1行（A）
+        num_items_x=1,  # 1列
+        num_items_y=2,  # 2行（01-02，从下到上）
         num_items_z=1,  # 1层
         dx=10.0,
         dy=10.0,
         dz=10.0,
-        item_dx=137.0,
-        item_dy=96.0,
+        item_dx=96.0,   # 列间距（这里只有1列，不重要）
+        item_dy=137.0,  # 行间距（A01到A02的竖向距离）
         item_dz=120.0,
+        # ⭐ 竖向warehouse：交换槽位尺寸，使槽位框也是竖向的
+        resource_size_x=86.0,   # 原来的 resource_size_y
+        resource_size_y=127.0,  # 原来的 resource_size_x
+        resource_size_z=25.0,
         category="warehouse",
+        layout="vertical-col-major",  # ⭐ 竖向warehouse专用布局
     )
 
 def bioyond_warehouse_tipbox_storage(name: str) -> WareHouse:

unilabos/resources/container.py

@@ -27,7 +27,7 @@ class RegularContainer(Container):
 def get_regular_container(name="container"):
     r = RegularContainer(name=name)
     r.category = "container"
-    return RegularContainer(name=name)
+    return r
 
 #
 # class RegularContainer(object):

unilabos/resources/graphio.py

@@ -13,7 +13,7 @@ from unilabos.config.config import BasicConfig
 from unilabos.resources.container import RegularContainer
 from unilabos.resources.itemized_carrier import ItemizedCarrier, BottleCarrier
 from unilabos.ros.msgs.message_converter import convert_to_ros_msg
-from unilabos.ros.nodes.resource_tracker import (
+from unilabos.resources.resource_tracker import (
     ResourceDictInstance,
     ResourceTreeSet,
 )
@@ -42,7 +42,7 @@ def canonicalize_nodes_data(
     Returns:
         ResourceTreeSet: 标准化后的资源树集合
     """
-    print_status(f"{len(nodes)} Resources loaded:", "info")
+    print_status(f"{len(nodes)} Resources loaded", "info")
 
     # 第一步：基本预处理（处理graphml的label字段）
     outer_host_node_id = None
@@ -779,6 +779,22 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
             if not locations:
                 logger.debug(f"[物料位置] {unique_name} 没有location信息，跳过warehouse放置")
 
+            # ⭐ 预先检查：如果物料的任何location在竖向warehouse中，提前交换尺寸
+            # 这样可以避免多个location时尺寸不一致的问题
+            needs_size_swap = False
+            for loc in locations:
+                wh_name_check = loc.get("whName")
+                if wh_name_check in ["站内试剂存放堆栈", "测量小瓶仓库(测密度)"]:
+                    needs_size_swap = True
+                    break
+
+            if needs_size_swap and hasattr(plr_material, 'size_x') and hasattr(plr_material, 'size_y'):
+                original_x = plr_material.size_x
+                original_y = plr_material.size_y
+                plr_material.size_x = original_y
+                plr_material.size_y = original_x
+                logger.debug(f"   物料 {unique_name} 将放入竖向warehouse，预先交换尺寸: {original_x}×{original_y} → {plr_material.size_x}×{plr_material.size_y}")
+
             for loc in locations:
                 wh_name = loc.get("whName")
                 logger.debug(f"[物料位置] {unique_name} 尝试放置到 warehouse: {wh_name} (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')}, z={loc.get('z')})")
@@ -800,7 +816,6 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
                     logger.debug(f"[Warehouse匹配] 找到warehouse: {wh_name} (容量: {warehouse.capacity}, 行×列: {warehouse.num_items_x}×{warehouse.num_items_y})")
 
                     # Bioyond坐标映射 (重要！): x→行(1=A,2=B...), y→列(1=01,2=02...), z→层(通常=1)
-                    # PyLabRobot warehouse是列优先存储: A01,B01,C01,D01, A02,B02,C02,D02, ...
                     x = loc.get("x", 1)  # 行号 (1-based: 1=A, 2=B, 3=C, 4=D)
                     y = loc.get("y", 1)  # 列号 (1-based: 1=01, 2=02, 3=03...)
                     z = loc.get("z", 1)  # 层号 (1-based, 通常为1)
@@ -809,12 +824,23 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
                     if wh_name == "堆栈1右":
                         y = y - 4  # 将5-8映射到1-4
 
-                    # 特殊处理：对于1行×N列的横向warehouse（如站内试剂存放堆栈）
-                    # Bioyond的y坐标表示线性位置序号，而不是列号
-                    if warehouse.num_items_y == 1:
-                        # 1行warehouse: 直接用y作为线性索引
-                        idx = y - 1
-                        logger.debug(f"1行warehouse {wh_name}: y={y} → idx={idx}")
+                    # 特殊处理竖向warehouse（站内试剂存放堆栈、测量小瓶仓库）
+                    # 这些warehouse使用 vertical-col-major 布局
+                    if wh_name in ["站内试剂存放堆栈", "测量小瓶仓库(测密度)"]:
+                        # vertical-col-major 布局的坐标映射：
+                        # - Bioyond的x(1=A,2=B)对应warehouse的列(col, x方向)
+                        # - Bioyond的y(1=01,2=02,3=03)对应warehouse的行(row, y方向)，从下到上
+                        # vertical-col-major 中: row=0 对应底部，row=n-1 对应顶部
+                        # Bioyond y=1(01) 对应底部 → row=0, y=2(02) 对应中间 → row=1
+                        # 索引计算: idx = row * num_cols + col
+                        col_idx = x - 1  # Bioyond的x(A,B) → col索引(0,1)
+                        row_idx = y - 1  # Bioyond的y(01,02,03) → row索引(0,1,2)
+                        layer_idx = z - 1
+
+                        idx = layer_idx * (warehouse.num_items_x * warehouse.num_items_y) + row_idx * warehouse.num_items_x + col_idx
+                        logger.debug(f"🔍 竖向warehouse {wh_name}: Bioyond(x={x},y={y},z={z}) → warehouse(col={col_idx},row={row_idx},layer={layer_idx}) → idx={idx}, capacity={warehouse.capacity}")
+
+                    # 普通横向warehouse的处理
                     else:
                         # 多行warehouse: 根据 layout 使用不同的索引计算
                         row_idx = x - 1  # x表示行: 转为0-based
@@ -838,6 +864,7 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
 
                     if 0 <= idx < warehouse.capacity:
                         if warehouse[idx] is None or isinstance(warehouse[idx], ResourceHolder):
+                            # 物料尺寸已在放入warehouse前根据需要进行了交换
                             warehouse[idx] = plr_material
                             logger.debug(f"✅ 物料 {unique_name} 放置到 {wh_name}[{idx}] (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')})")
                     else:
@@ -1011,11 +1038,24 @@ def resource_plr_to_bioyond(plr_resources: list[ResourcePLR], type_mapping: dict
                 logger.debug(f"  📭 [单瓶物料] {resource.name} 无液体，使用资源名: {material_name}")
 
             # 🎯 处理物料默认参数和单位
-            # 检查是否有该物料名称的默认参数配置
+            # 优先级: typeId参数 > 物料名称参数 > 默认值
             default_unit = "个"  # 默认单位
             material_parameters = {}
 
-            if material_name in material_params:
+            # 1️⃣ 首先检查是否有 typeId 对应的参数配置（从 material_params 中获取，key 格式为 "type:<typeId>"）
+            type_params_key = f"type:{type_id}"
+            if type_params_key in material_params:
+                params_config = material_params[type_params_key].copy()
+
+                # 提取 unit 字段（如果有）
+                if "unit" in params_config:
+                    default_unit = params_config.pop("unit")  # 从参数中移除，放到外层
+
+                # 剩余的字段放入 Parameters
+                material_parameters = params_config
+                logger.debug(f"  🔧 [物料参数-按typeId] 为 typeId={type_id[:8]}... 应用配置: unit={default_unit}, parameters={material_parameters}")
+            # 2️⃣ 其次检查是否有该物料名称的默认参数配置
+            elif material_name in material_params:
                 params_config = material_params[material_name].copy()
 
                 # 提取 unit 字段（如果有）
@@ -1024,7 +1064,7 @@ def resource_plr_to_bioyond(plr_resources: list[ResourcePLR], type_mapping: dict
 
                 # 剩余的字段放入 Parameters
                 material_parameters = params_config
-                logger.debug(f"  🔧 [物料参数] 为 {material_name} 应用配置: unit={default_unit}, parameters={material_parameters}")
+                logger.debug(f"  🔧 [物料参数-按名称] 为 {material_name} 应用配置: unit={default_unit}, parameters={material_parameters}")
 
             # 转换为 JSON 字符串
             parameters_json = json.dumps(material_parameters) if material_parameters else "{}"
@@ -1151,11 +1191,7 @@ def initialize_resource(resource_config: dict, resource_type: Any = None) -> Uni
         if resource_class_config["type"] == "pylabrobot":
             resource_plr = RESOURCE(name=resource_config["name"])
             if resource_type != ResourcePLR:
-                tree_sets = ResourceTreeSet.from_plr_resources([resource_plr])
-                # r = resource_plr_to_ulab(resource_plr=resource_plr, parent_name=resource_config.get("parent", None))
-                # # r = resource_plr_to_ulab(resource_plr=resource_plr)
-                # if resource_config.get("position") is not None:
-                #     r["position"] = resource_config["position"]
+                tree_sets = ResourceTreeSet.from_plr_resources([resource_plr], known_newly_created=True)
                 r = tree_sets.dump()
             else:
                 r = resource_plr

unilabos/resources/itemized_carrier.py

@@ -50,13 +50,46 @@ class Bottle(Well):
         self.barcode = barcode
 
     def serialize(self) -> dict:
+        # Pylabrobot expects barcode to be an object with serialize(), but here it is a str.
+        # We temporarily unset it to avoid AttributeError in super().serialize().
+        _barcode = self.barcode
+        self.barcode = None
+        try:
+            data = super().serialize()
+        finally:
+            self.barcode = _barcode
+
         return {
-            **super().serialize(),
+            **data,
             "diameter": self.diameter,
             "height": self.height,
             "barcode": self.barcode,
         }
 
+    @classmethod
+    def deserialize(cls, data: dict, allow_marshal: bool = False):
+        # Extract barcode before calling parent deserialize to avoid type error
+        barcode_data = data.pop("barcode", None)
+
+        # Call parent deserialize
+        instance = super(Bottle, cls).deserialize(data, allow_marshal=allow_marshal)
+
+        # Set barcode as string (not as Barcode object)
+        if barcode_data:
+            if isinstance(barcode_data, str):
+                instance.barcode = barcode_data
+            elif isinstance(barcode_data, dict):
+                # If it's a dict (Barcode serialized format), extract the data field
+                instance.barcode = barcode_data.get("data", "")
+        else:
+            instance.barcode = ""
+
+        # Set additional attributes
+        instance.diameter = data.get("diameter", instance._size_x)
+        instance.height = data.get("height", instance._size_z)
+
+        return instance
+
 T = TypeVar("T", bound=ResourceHolder)
 
 S = TypeVar("S", bound=ResourceHolder)
@@ -149,6 +182,7 @@ class ItemizedCarrier(ResourcePLR):
 
     if not reassign and self.sites[idx] is not None:
       raise ValueError(f"a site with index {idx} already exists")
+    location = list(self.child_locations.values())[idx]
     super().assign_child_resource(resource, location=location, reassign=reassign)
     self.sites[idx] = resource
 

unilabos/resources/resource_tracker.py

@@ -1,7 +1,7 @@
 import inspect
 import traceback
 import uuid
-from pydantic import BaseModel, field_serializer, field_validator
+from pydantic import BaseModel, field_serializer, field_validator, ValidationError
 from pydantic import Field
 from typing import List, Tuple, Any, Dict, Literal, Optional, cast, TYPE_CHECKING, Union
 
@@ -14,9 +14,9 @@ if TYPE_CHECKING:
 
 
 class ResourceDictPositionSize(BaseModel):
-    depth: float = Field(description="Depth", default=0.0)
-    width: float = Field(description="Width", default=0.0)
-    height: float = Field(description="Height", default=0.0)
+    depth: float = Field(description="Depth", default=0.0)  # z
+    width: float = Field(description="Width", default=0.0)  # x
+    height: float = Field(description="Height", default=0.0)  # y
 
 
 class ResourceDictPositionScale(BaseModel):
@@ -66,8 +66,8 @@ class ResourceDict(BaseModel):
     klass: str = Field(alias="class", description="Resource class name")
     pose: ResourceDictPosition = Field(description="Resource position", default_factory=ResourceDictPosition)
     config: Dict[str, Any] = Field(description="Resource configuration")
-    data: Dict[str, Any] = Field(description="Resource data")
-    extra: Dict[str, Any] = Field(description="Extra data")
+    data: Dict[str, Any] = Field(description="Resource data, eg: container liquid data")
+    extra: Dict[str, Any] = Field(description="Extra data, eg: slot index")
 
     @field_serializer("parent_uuid")
     def _serialize_parent(self, parent_uuid: Optional["ResourceDict"]):
@@ -147,20 +147,24 @@ class ResourceDictInstance(object):
         if not content.get("extra"):  # MagicCode
             content["extra"] = {}
         if "position" in content:
-            pose = content.get("pose",{})
-            if "position" not in pose :
+            pose = content.get("pose", {})
+            if "position" not in pose:
                 if "position" in content["position"]:
                     pose["position"] = content["position"]["position"]
                 else:
                     pose["position"] = {"x": 0, "y": 0, "z": 0}
             if "size" not in pose:
                 pose["size"] = {
-                    "width": content["config"].get("size_x", 0), 
-                    "height": content["config"].get("size_y", 0), 
-                    "depth": content["config"].get("size_z", 0)
+                    "width": content["config"].get("size_x", 0),
+                    "height": content["config"].get("size_y", 0),
+                    "depth": content["config"].get("size_z", 0),
                 }
             content["pose"] = pose
-        return ResourceDictInstance(ResourceDict.model_validate(content))
+        try:
+            res_dict = ResourceDict.model_validate(content)
+            return ResourceDictInstance(res_dict)
+        except ValidationError as err:
+            raise err
 
     def get_plr_nested_dict(self) -> Dict[str, Any]:
         """获取资源实例的嵌套字典表示"""
@@ -322,7 +326,7 @@ class ResourceTreeSet(object):
             )
 
     @classmethod
-    def from_plr_resources(cls, resources: List["PLRResource"]) -> "ResourceTreeSet":
+    def from_plr_resources(cls, resources: List["PLRResource"], known_newly_created=False) -> "ResourceTreeSet":
         """
         从plr资源创建ResourceTreeSet
         """
@@ -339,6 +343,8 @@ class ResourceTreeSet(object):
             }
             if source in replace_info:
                 return replace_info[source]
+            elif source is None:
+                return ""
             else:
                 print("转换pylabrobot的时候，出现未知类型", source)
                 return source
@@ -349,7 +355,8 @@ class ResourceTreeSet(object):
             if not uid:
                 uid = str(uuid.uuid4())
                 res.unilabos_uuid = uid
-                logger.warning(f"{res}没有uuid，请设置后再传入，默认填充{uid}！\n{traceback.format_exc()}")
+                if not known_newly_created:
+                    logger.warning(f"{res}没有uuid，请设置后再传入，默认填充{uid}！\n{traceback.format_exc()}")
 
             # 获取unilabos_extra，默认为空字典
             extra = getattr(res, "unilabos_extra", {})
@@ -448,7 +455,13 @@ class ResourceTreeSet(object):
         from pylabrobot.utils.object_parsing import find_subclass
 
         # 类型映射
-        TYPE_MAP = {"plate": "Plate", "well": "Well", "deck": "Deck", "container": "RegularContainer", "tip_spot": "TipSpot"}
+        TYPE_MAP = {
+            "plate": "Plate",
+            "well": "Well",
+            "deck": "Deck",
+            "container": "RegularContainer",
+            "tip_spot": "TipSpot",
+        }
 
         def collect_node_data(node: ResourceDictInstance, name_to_uuid: dict, all_states: dict, name_to_extra: dict):
             """一次遍历收集 name_to_uuid, all_states 和 name_to_extra"""
@@ -469,9 +482,9 @@ class ResourceTreeSet(object):
                 **res.config,
                 "name": res.name,
                 "type": res.config.get("type", plr_type),
-                "size_x": res.config.get("size_x", 0),
-                "size_y": res.config.get("size_y", 0),
-                "size_z": res.config.get("size_z", 0),
+                "size_x": res.pose.size.width,
+                "size_y": res.pose.size.height,
+                "size_z": res.pose.size.depth,
                 "location": {
                     "x": res.pose.position.x,
                     "y": res.pose.position.y,
@@ -608,6 +621,16 @@ class ResourceTreeSet(object):
         """
         return [tree.root_node for tree in self.trees]
 
+    @property
+    def root_nodes_uuid(self) -> List[ResourceDictInstance]:
+        """
+        获取所有树的根节点
+
+        Returns:
+            所有根节点的资源实例列表
+        """
+        return [tree.root_node.res_content.uuid for tree in self.trees]
+
     @property
     def all_nodes(self) -> List[ResourceDictInstance]:
         """
@@ -918,6 +941,33 @@ class DeviceNodeResourceTracker(object):
 
         return self._traverse_and_process(resource, process)
 
+    def loop_find_with_uuid(self, resource, target_uuid: str):
+        """
+        递归遍历资源树，根据 uuid 查找并返回对应的资源
+
+        Args:
+            resource: 资源对象（可以是list、dict或实例）
+            target_uuid: 要查找的uuid
+
+        Returns:
+            找到的资源对象，未找到则返回None
+        """
+        found_resource = None
+
+        def process(res):
+            nonlocal found_resource
+            if found_resource is not None:
+                return 0  # 已找到，跳过后续处理
+            current_uuid = self._get_resource_attr(res, "uuid", "unilabos_uuid")
+            if current_uuid and current_uuid == target_uuid:
+                found_resource = res
+                logger.trace(f"找到资源UUID: {target_uuid}")
+                return 1
+            return 0
+
+        self._traverse_and_process(resource, process)
+        return found_resource
+
     def loop_set_extra(self, resource, name_to_extra_map: Dict[str, dict]) -> int:
         """
         递归遍历资源树，根据 name 设置所有节点的 extra
@@ -1103,7 +1153,7 @@ class DeviceNodeResourceTracker(object):
         for key in keys_to_remove:
             self.resource2parent_resource.pop(key, None)
 
-        logger.debug(f"成功移除资源: {resource}")
+        logger.trace(f"[ResourceTracker] 成功移除资源: {resource}")
         return True
 
     def clear_resource(self):

unilabos/resources/warehouse.py

@@ -42,6 +42,10 @@ def warehouse_factory(
                 if layout == "row-major":
                     # 行优先：row=0(A行) 应该显示在上方，需要较小的 y 值
                     y = dy + row * item_dy
+                elif layout == "vertical-col-major":
+                    # 竖向warehouse: row=0 对应顶部（y小），row=n-1 对应底部（y大）
+                    # 但标签 01 应该在底部，所以使用反向映射
+                    y = dy + (num_items_y - row - 1) * item_dy
                 else:
                     # 列优先：保持原逻辑（row=0 对应较大的 y）
                     y = dy + (num_items_y - row - 1) * item_dy
@@ -66,6 +70,14 @@ def warehouse_factory(
         # 行优先顺序: A01,A02,A03,A04, B01,B02,B03,B04
         # locations[0] 对应 row=0, y最大（前端顶部）→ 应该是 A01
         keys = [f"{LETTERS[j]}{i + 1 + col_offset:02d}" for j in range(len_y) for i in range(len_x)]
+    elif layout == "vertical-col-major":
+        # ⭐ 竖向warehouse专用布局：
+        # 字母(A,B,C...)对应列(横向, x方向)，数字(01,02,03...)对应行(竖向, y方向，从下到上)
+        # locations 生成顺序: row→col (row=0,col=0 → row=0,col=1 → row=1,col=0 → ...)
+        # 其中 row=0 对应底部(y大)，row=n-1 对应顶部(y小)
+        # 标签中 01 对应底部(row=0)，02 对应中间(row=1)，03 对应顶部(row=2)
+        # 标签顺序: A01,B01,A02,B02,A03,B03
+        keys = [f"{LETTERS[col]}{row + 1 + col_offset:02d}" for row in range(len_y) for col in range(len_x)]
     else:
         # 列优先顺序: A01,B01,C01,D01, A02,B02,C02,D02
         keys = [f"{LETTERS[j]}{i + 1 + col_offset:02d}" for i in range(len_x) for j in range(len_y)]

unilabos/ros/device_node_wrapper.py

@@ -5,7 +5,7 @@ from unilabos.ros.msgs.message_converter import (
     get_action_type,
 )
 from unilabos.ros.nodes.base_device_node import init_wrapper, ROS2DeviceNode
-from unilabos.ros.nodes.resource_tracker import ResourceDictInstance
+from unilabos.resources.resource_tracker import ResourceDictInstance
 
 # 定义泛型类型变量
 T = TypeVar("T")

unilabos/ros/initialize_device.py

@@ -1,10 +1,9 @@
-import copy
 from typing import Optional
 
 from unilabos.registry.registry import lab_registry
 from unilabos.ros.device_node_wrapper import ros2_device_node
 from unilabos.ros.nodes.base_device_node import ROS2DeviceNode, DeviceInitError
-from unilabos.ros.nodes.resource_tracker import ResourceDictInstance
+from unilabos.resources.resource_tracker import ResourceDictInstance
 from unilabos.utils import logger
 from unilabos.utils.exception import DeviceClassInvalid
 from unilabos.utils.import_manager import default_manager

unilabos/ros/main_slave_run.py

@@ -1,4 +1,5 @@
 import json
+
 # from nt import device_encoding
 import threading
 import time
@@ -10,7 +11,7 @@ from unilabos_msgs.srv._serial_command import SerialCommand_Response
 
 from unilabos.app.register import register_devices_and_resources
 from unilabos.ros.nodes.presets.resource_mesh_manager import ResourceMeshManager
-from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker, ResourceTreeSet
+from unilabos.resources.resource_tracker import DeviceNodeResourceTracker, ResourceTreeSet
 from unilabos.devices.ros_dev.liquid_handler_joint_publisher import LiquidHandlerJointPublisher
 from unilabos_msgs.srv import SerialCommand  # type: ignore
 from rclpy.executors import MultiThreadedExecutor
@@ -55,7 +56,11 @@ def main(
 ) -> None:
     """主函数"""
 
-    rclpy.init(args=rclpy_init_args)
+    # Support restart - check if rclpy is already initialized
+    if not rclpy.ok():
+        rclpy.init(args=rclpy_init_args)
+    else:
+        logger.info("[ROS] rclpy already initialized, reusing context")
     executor = rclpy.__executor = MultiThreadedExecutor()
     # 创建主机节点
     host_node = HostNode(
@@ -88,7 +93,7 @@ def main(
         joint_republisher = JointRepublisher("joint_republisher", host_node.resource_tracker)
         # lh_joint_pub = LiquidHandlerJointPublisher(
         #     resources_config=resources_list, resource_tracker=host_node.resource_tracker
-        # ) 
+        # )
         executor.add_node(resource_mesh_manager)
         executor.add_node(joint_republisher)
         # executor.add_node(lh_joint_pub)

unilabos/ros/msgs/message_converter.py

@@ -159,10 +159,14 @@ _msg_converter: Dict[Type, Any] = {
             else Pose()
         ),
         config=json.dumps(x.get("config", {})),
-        data=json.dumps(x.get("data", {})),
+        data=json.dumps(obtain_data_with_uuid(x)),
     ),
 }
 
+def obtain_data_with_uuid(x: dict):
+    data = x.get("data", {})
+    data["unilabos_uuid"] = x.get("uuid", None)
+    return data
 
 def json_or_yaml_loads(data: str) -> Any:
     try:

unilabos/ros/nodes/base_device_node.py

@@ -1,4 +1,3 @@
-import copy
 import inspect
 import io
 import json
@@ -13,7 +12,6 @@ import asyncio
 
 import rclpy
 import yaml
-from msgcenterpy import ROS2MessageInstance
 from rclpy.node import Node
 from rclpy.action import ActionServer, ActionClient
 from rclpy.action.server import ServerGoalHandle
@@ -22,15 +20,13 @@ from rclpy.callback_groups import ReentrantCallbackGroup
 from rclpy.service import Service
 from unilabos_msgs.action import SendCmd
 from unilabos_msgs.srv._serial_command import SerialCommand_Request, SerialCommand_Response
+
+from unilabos.config.config import BasicConfig
 from unilabos.utils.decorator import get_topic_config, get_all_subscriptions
 
 from unilabos.resources.container import RegularContainer
 from unilabos.resources.graphio import (
-    resource_ulab_to_plr,
     initialize_resources,
-    dict_to_tree,
-    resource_plr_to_ulab,
-    tree_to_list,
 )
 from unilabos.resources.plr_additional_res_reg import register
 from unilabos.ros.msgs.message_converter import (
@@ -47,7 +43,7 @@ from unilabos_msgs.srv import (
 )  # type: ignore
 from unilabos_msgs.msg import Resource  # type: ignore
 
-from unilabos.ros.nodes.resource_tracker import (
+from unilabos.resources.resource_tracker import (
     DeviceNodeResourceTracker,
     ResourceTreeSet,
     ResourceTreeInstance,
@@ -363,7 +359,6 @@ class BaseROS2DeviceNode(Node, Generic[T]):
             return res
 
         async def append_resource(req: SerialCommand_Request, res: SerialCommand_Response):
-            from pylabrobot.resources.resource import Resource as ResourcePLR
             from pylabrobot.resources.deck import Deck
             from pylabrobot.resources import Coordinate
             from pylabrobot.resources import Plate
@@ -435,11 +430,14 @@ class BaseROS2DeviceNode(Node, Generic[T]):
             })
             tree_response: SerialCommand.Response = await client.call_async(request)
             uuid_maps = json.loads(tree_response.response)
-            self.resource_tracker.loop_update_uuid(input_resources, uuid_maps)
+            plr_instances = rts.to_plr_resources()
+            for plr_instance in plr_instances:
+                self.resource_tracker.loop_update_uuid(plr_instance, uuid_maps)
+            rts: ResourceTreeSet = ResourceTreeSet.from_plr_resources(plr_instances)
             self.lab_logger().info(f"Resource tree added. UUID mapping: {len(uuid_maps)} nodes")
             final_response = {
-                "created_resources": rts.dump(),
-                "liquid_input_resources": [],
+                "created_resource_tree": rts.dump(),
+                "liquid_input_resource_tree": [],
             }
             res.response = json.dumps(final_response)
             # 如果driver自己就有assign的方法，那就使用driver自己的assign方法
@@ -465,7 +463,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 return res
             try:
                 if len(rts.root_nodes) == 1 and parent_resource is not None:
-                    plr_instance = rts.to_plr_resources()[0]
+                    plr_instance = plr_instances[0]
                     if isinstance(plr_instance, Plate):
                         empty_liquid_info_in: List[Tuple[Optional[str], float]] = [(None, 0)] * plr_instance.num_items
                         if len(ADD_LIQUID_TYPE) == 1 and len(LIQUID_VOLUME) == 1 and len(LIQUID_INPUT_SLOT) > 1:
@@ -490,7 +488,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                             input_wells = []
                             for r in LIQUID_INPUT_SLOT:
                                 input_wells.append(plr_instance.children[r])
-                        final_response["liquid_input_resources"] = ResourceTreeSet.from_plr_resources(input_wells).dump()
+                        final_response["liquid_input_resource_tree"] = ResourceTreeSet.from_plr_resources(input_wells).dump()
                         res.response = json.dumps(final_response)
                     if issubclass(parent_resource.__class__, Deck) and hasattr(parent_resource, "assign_child_at_slot") and "slot" in other_calling_param:
                         other_calling_param["slot"] = int(other_calling_param["slot"])
@@ -624,7 +622,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
         )  # type: ignore
         raw_nodes = json.loads(response.response)
         tree_set = ResourceTreeSet.from_raw_dict_list(raw_nodes)
-        self.lab_logger().debug(f"获取资源结果: {len(tree_set.trees)} 个资源树")
+        self.lab_logger().trace(f"获取资源结果: {len(tree_set.trees)} 个资源树 {tree_set.root_nodes}")
         return tree_set
 
     async def get_resource_with_dir(self, resource_id: str, with_children: bool = True) -> "ResourcePLR":
@@ -658,61 +656,71 @@ class BaseROS2DeviceNode(Node, Generic[T]):
 
     def transfer_to_new_resource(
         self, plr_resource: "ResourcePLR", tree: ResourceTreeInstance, additional_add_params: Dict[str, Any]
-    ):
+    ) -> Optional["ResourcePLR"]:
         parent_uuid = tree.root_node.res_content.parent_uuid
-        if parent_uuid:
-            parent_resource: ResourcePLR = self.resource_tracker.uuid_to_resources.get(parent_uuid)
-            if parent_resource is None:
+        if not parent_uuid:
+            self.lab_logger().warning(
+                f"物料{plr_resource} parent未知，挂载到当前节点下，额外参数：{additional_add_params}"
+            )
+            return None
+        if parent_uuid == self.uuid:
+            self.lab_logger().warning(
+                f"物料{plr_resource}请求挂载到{self.identifier}，额外参数：{additional_add_params}"
+            )
+            return None
+        parent_resource: ResourcePLR = self.resource_tracker.uuid_to_resources.get(parent_uuid)
+        if parent_resource is None:
+            self.lab_logger().warning(
+                f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_uuid}不存在"
+            )
+        else:
+            try:
+                # 特殊兼容所有plr的物料的assign方法，和create_resource append_resource后期同步
+                additional_params = {}
+                extra = getattr(plr_resource, "unilabos_extra", {})
+                if len(extra):
+                    self.lab_logger().info(f"发现物料{plr_resource}额外参数: " + str(extra))
+                if "update_resource_site" in extra:
+                    additional_add_params["site"] = extra["update_resource_site"]
+                site = additional_add_params.get("site", None)
+                spec = inspect.signature(parent_resource.assign_child_resource)
+                if "spot" in spec.parameters:
+                    ordering_dict: Dict[str, Any] = getattr(parent_resource, "_ordering")
+                    if ordering_dict:
+                        site = list(ordering_dict.keys()).index(site)
+                    additional_params["spot"] = site
+                old_parent = plr_resource.parent
+                if old_parent is not None:
+                    # plr并不支持同一个deck的加载和卸载
+                    self.lab_logger().warning(f"物料{plr_resource}请求从{old_parent}卸载")
+                    old_parent.unassign_child_resource(plr_resource)
                 self.lab_logger().warning(
-                    f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_uuid}不存在"
+                    f"物料{plr_resource}请求挂载到{parent_resource}，额外参数：{additional_params}"
                 )
-            else:
-                try:
-                    # 特殊兼容所有plr的物料的assign方法，和create_resource append_resource后期同步
-                    additional_params = {}
-                    extra = getattr(plr_resource, "unilabos_extra", {})
-                    if len(extra):
-                        self.lab_logger().info(f"发现物料{plr_resource}额外参数: " + str(extra))
-                    if "update_resource_site" in extra:
-                        additional_add_params["site"] = extra["update_resource_site"]
-                    site = additional_add_params.get("site", None)
-                    spec = inspect.signature(parent_resource.assign_child_resource)
-                    if "spot" in spec.parameters:
-                        ordering_dict: Dict[str, Any] = getattr(parent_resource, "_ordering")
-                        if ordering_dict:
-                            site = list(ordering_dict.keys()).index(site)
-                        additional_params["spot"] = site
-                    old_parent = plr_resource.parent
-                    if old_parent is not None:
-                        # plr并不支持同一个deck的加载和卸载
-                        self.lab_logger().warning(f"物料{plr_resource}请求从{old_parent}卸载")
-                        old_parent.unassign_child_resource(plr_resource)
-                    self.lab_logger().warning(
-                        f"物料{plr_resource}请求挂载到{parent_resource}，额外参数：{additional_params}"
-                    )
 
-                    # ⭐ assign 之前，需要从 resources 列表中移除
-                    # 因为资源将不再是顶级资源，而是成为 parent_resource 的子资源
-                    # 如果不移除，figure_resource 会找到两次：一次在 resources，一次在 parent 的 children
-                    resource_id = id(plr_resource)
-                    for i, r in enumerate(self.resource_tracker.resources):
-                        if id(r) == resource_id:
-                            self.resource_tracker.resources.pop(i)
-                            self.lab_logger().debug(
-                                f"从顶级资源列表中移除 {plr_resource.name}（即将成为 {parent_resource.name} 的子资源）"
-                            )
-                            break
+                # ⭐ assign 之前，需要从 resources 列表中移除
+                # 因为资源将不再是顶级资源，而是成为 parent_resource 的子资源
+                # 如果不移除，figure_resource 会找到两次：一次在 resources，一次在 parent 的 children
+                resource_id = id(plr_resource)
+                for i, r in enumerate(self.resource_tracker.resources):
+                    if id(r) == resource_id:
+                        self.resource_tracker.resources.pop(i)
+                        self.lab_logger().debug(
+                            f"从顶级资源列表中移除 {plr_resource.name}（即将成为 {parent_resource.name} 的子资源）"
+                        )
+                        break
 
-                    parent_resource.assign_child_resource(plr_resource, location=None, **additional_params)
+                parent_resource.assign_child_resource(plr_resource, location=None, **additional_params)
 
-                    func = getattr(self.driver_instance, "resource_tree_transfer", None)
-                    if callable(func):
-                        # 分别是 物料的原来父节点，当前物料的状态，物料的新父节点（此时物料已经重新assign了）
-                        func(old_parent, plr_resource, parent_resource)
-                except Exception as e:
-                    self.lab_logger().warning(
-                        f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_resource}[{parent_uuid}]失败！\n{traceback.format_exc()}"
-                    )
+                func = getattr(self.driver_instance, "resource_tree_transfer", None)
+                if callable(func):
+                    # 分别是 物料的原来父节点，当前物料的状态，物料的新父节点（此时物料已经重新assign了）
+                    func(old_parent, plr_resource, parent_resource)
+                return parent_resource
+            except Exception as e:
+                self.lab_logger().warning(
+                    f"物料{plr_resource}请求挂载{tree.root_node.res_content.name}的父节点{parent_resource}[{parent_uuid}]失败！\n{traceback.format_exc()}"
+                )
 
     async def s2c_resource_tree(self, req: SerialCommand_Request, res: SerialCommand_Response):
         """
@@ -727,7 +735,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
 
         def _handle_add(
             plr_resources: List[ResourcePLR], tree_set: ResourceTreeSet, additional_add_params: Dict[str, Any]
-        ) -> Dict[str, Any]:
+        ) -> Tuple[Dict[str, Any], List[ResourcePLR]]:
             """
             处理资源添加操作的内部函数
 
@@ -739,15 +747,20 @@ class BaseROS2DeviceNode(Node, Generic[T]):
             Returns:
                 操作结果字典
             """
+            parents = []  # 放的是被变更的物料 / 被变更的物料父级
             for plr_resource, tree in zip(plr_resources, tree_set.trees):
                 self.resource_tracker.add_resource(plr_resource)
-                self.transfer_to_new_resource(plr_resource, tree, additional_add_params)
+                parent = self.transfer_to_new_resource(plr_resource, tree, additional_add_params)
+                if parent is not None:
+                    parents.append(parent)
+                else:
+                    parents.append(plr_resource)
 
             func = getattr(self.driver_instance, "resource_tree_add", None)
             if callable(func):
                 func(plr_resources)
 
-            return {"success": True, "action": "add"}
+            return {"success": True, "action": "add"}, parents
 
         def _handle_remove(resources_uuid: List[str]) -> Dict[str, Any]:
             """
@@ -782,11 +795,11 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 if plr_resource.parent is not None:
                     plr_resource.parent.unassign_child_resource(plr_resource)
                 self.resource_tracker.remove_resource(plr_resource)
-                self.lab_logger().info(f"移除物料 {plr_resource} 及其子节点")
+                self.lab_logger().info(f"[资源同步] 移除物料 {plr_resource} 及其子节点")
 
             for other_plr_resource in other_plr_resources:
                 self.resource_tracker.remove_resource(other_plr_resource)
-                self.lab_logger().info(f"移除物料 {other_plr_resource} 及其子节点")
+                self.lab_logger().info(f"[资源同步] 移除物料 {other_plr_resource} 及其子节点")
 
             return {
                 "success": True,
@@ -797,7 +810,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
 
         def _handle_update(
             plr_resources: List[Union[ResourcePLR, ResourceDictInstance]], tree_set: ResourceTreeSet, additional_add_params: Dict[str, Any]
-        ) -> Dict[str, Any]:
+        ) -> Tuple[Dict[str, Any], List[ResourcePLR]]:
             """
             处理资源更新操作的内部函数
 
@@ -809,6 +822,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
             Returns:
                 操作结果字典
             """
+            original_instances = []
             for plr_resource, tree in zip(plr_resources, tree_set.trees):
                 if isinstance(plr_resource, ResourceDictInstance):
                     self._lab_logger.info(f"跳过 非资源{plr_resource.res_content.name} 的更新")
@@ -817,11 +831,16 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 original_instance: ResourcePLR = self.resource_tracker.figure_resource(
                     {"uuid": tree.root_node.res_content.uuid}, try_mode=False
                 )
+                original_parent_resource = original_instance.parent
+                original_parent_resource_uuid = getattr(original_parent_resource, "unilabos_uuid", None)
+                target_parent_resource_uuid = tree.root_node.res_content.uuid_parent
+                not_same_parent = original_parent_resource_uuid != target_parent_resource_uuid and original_parent_resource is not None
+                old_name = original_instance.name
+                new_name = plr_resource.name
+                parent_appended = False
 
-                # Update操作中包含改名：需要先remove再add
-                if original_instance.name != plr_resource.name:
-                    old_name = original_instance.name
-                    new_name = plr_resource.name
+                # Update操作中包含改名：需要先remove再add，这里更新父节点即可
+                if not not_same_parent and old_name != new_name:
                     self.lab_logger().info(f"物料改名操作：{old_name} -> {new_name}")
 
                     # 收集所有相关的uuid（包括子节点）
@@ -830,12 +849,10 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                     _handle_add([original_instance], tree_set, additional_add_params)
 
                     self.lab_logger().info(f"物料改名完成：{old_name} -> {new_name}")
+                    original_instances.append(original_parent_resource)
+                    parent_appended = True
 
                 # 常规更新：不涉及改名
-                original_parent_resource = original_instance.parent
-                original_parent_resource_uuid = getattr(original_parent_resource, "unilabos_uuid", None)
-                target_parent_resource_uuid = tree.root_node.res_content.uuid_parent
-
                 self.lab_logger().info(
                     f"物料{original_instance} 原始父节点{original_parent_resource_uuid} "
                     f"目标父节点{target_parent_resource_uuid} 更新"
@@ -846,11 +863,23 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                     original_instance.unilabos_extra = getattr(plr_resource, "unilabos_extra")  # type: ignore  # noqa: E501
 
                 # 如果父节点变化，需要重新挂载
-                if (
-                    original_parent_resource_uuid != target_parent_resource_uuid
-                    and original_parent_resource is not None
-                ):
-                    self.transfer_to_new_resource(original_instance, tree, additional_add_params)
+                if not_same_parent:
+                    parent = self.transfer_to_new_resource(original_instance, tree, additional_add_params)
+                    original_instances.append(parent)
+                    parent_appended = True
+                else:
+                    # 判断是否变更了resource_site，重新登记
+                    target_site = original_instance.unilabos_extra.get("update_resource_site")
+                    sites = original_instance.parent.sites if original_instance.parent is not None and hasattr(original_instance.parent, "sites") else None
+                    site_names = list(original_instance.parent._ordering.keys()) if original_instance.parent is not None and hasattr(original_instance.parent, "sites") else []
+                    if target_site is not None and sites is not None and site_names is not None:
+                        site_index = sites.index(original_instance)
+                        site_name = site_names[site_index]
+                        if site_name != target_site:
+                            parent = self.transfer_to_new_resource(original_instance, tree, additional_add_params)
+                            if parent is not None:
+                                original_instances.append(parent)
+                                parent_appended = True
 
                 # 加载状态
                 original_instance.load_all_state(states)
@@ -858,13 +887,15 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 self.lab_logger().info(
                     f"更新了资源属性 {plr_resource}[{tree.root_node.res_content.uuid}] " f"及其子节点 {child_count} 个"
                 )
+                if not parent_appended:
+                    original_instances.append(original_instance)
 
             # 调用driver的update回调
             func = getattr(self.driver_instance, "resource_tree_update", None)
             if callable(func):
-                func(plr_resources)
+                func(original_instances)
 
-            return {"success": True, "action": "update"}
+            return {"success": True, "action": "update"}, original_instances
 
         try:
             data = json.loads(req.command)
@@ -874,8 +905,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 action = i.get("action")  # remove, add, update
                 resources_uuid: List[str] = i.get("data")  # 资源数据
                 additional_add_params = i.get("additional_add_params", {})  # 额外参数
-                self.lab_logger().info(
-                    f"[Resource Tree Update] Processing {action} operation, " f"resources count: {len(resources_uuid)}"
+                self.lab_logger().trace(
+                    f"[资源同步] 处理 {action}, " f"resources count: {len(resources_uuid)}"
                 )
                 tree_set = None
                 if action in ["add", "update"]:
@@ -887,7 +918,26 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                         if tree_set is None:
                             raise ValueError("tree_set不能为None")
                         plr_resources = tree_set.to_plr_resources()
-                        result = _handle_add(plr_resources, tree_set, additional_add_params)
+                        result, parents = _handle_add(plr_resources, tree_set, additional_add_params)
+                        parents: List[Optional["ResourcePLR"]] = [i for i in parents if i is not None]
+                        # de_dupe_parents = list(set(parents))
+                        # Fix unhashable type error for WareHouse
+                        de_dupe_parents = []
+                        _seen_ids = set()
+                        for p in parents:
+                            if id(p) not in _seen_ids:
+                                _seen_ids.add(id(p))
+                                de_dupe_parents.append(p)
+                        new_tree_set = ResourceTreeSet.from_plr_resources(de_dupe_parents)  # 去重
+                        for tree in new_tree_set.trees:
+                            if tree.root_node.res_content.uuid_parent is None and self.node_name != "host_node":
+                                tree.root_node.res_content.parent_uuid = self.uuid
+                        r = SerialCommand.Request()
+                        r.command = json.dumps(
+                            {"data": {"data": new_tree_set.dump()}, "action": "update"})  # 和Update Resource一致
+                        response: SerialCommand_Response = await self._resource_clients[
+                            "c2s_update_resource_tree"].call_async(r)  # type: ignore
+                        self.lab_logger().info(f"确认资源云端 Add 结果: {response.response}")
                         results.append(result)
                     elif action == "update":
                         if tree_set is None:
@@ -898,7 +948,18 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                                 plr_resources.append(tree.root_node)
                             else:
                                 plr_resources.append(ResourceTreeSet([tree]).to_plr_resources()[0])
-                        result = _handle_update(plr_resources, tree_set, additional_add_params)
+                        result, original_instances = _handle_update(plr_resources, tree_set, additional_add_params)
+                        if not BasicConfig.no_update_feedback:
+                            new_tree_set = ResourceTreeSet.from_plr_resources(original_instances)  # 去重
+                            for tree in new_tree_set.trees:
+                                if tree.root_node.res_content.uuid_parent is None and self.node_name != "host_node":
+                                    tree.root_node.res_content.parent_uuid = self.uuid
+                            r = SerialCommand.Request()
+                            r.command = json.dumps(
+                                {"data": {"data": new_tree_set.dump()}, "action": "update"})  # 和Update Resource一致
+                            response: SerialCommand_Response = await self._resource_clients[
+                                "c2s_update_resource_tree"].call_async(r)  # type: ignore
+                            self.lab_logger().info(f"确认资源云端 Update 结果: {response.response}")
                         results.append(result)
                     elif action == "remove":
                         result = _handle_remove(resources_uuid)
@@ -912,15 +973,15 @@ class BaseROS2DeviceNode(Node, Generic[T]):
             # 返回处理结果
             result_json = {"results": results, "total": len(data)}
             res.response = json.dumps(result_json, ensure_ascii=False, cls=TypeEncoder)
-            self.lab_logger().info(f"[Resource Tree Update] Completed processing {len(data)} operations")
+            # self.lab_logger().info(f"[Resource Tree Update] Completed processing {len(data)} operations")
 
         except json.JSONDecodeError as e:
             error_msg = f"Invalid JSON format: {str(e)}"
-            self.lab_logger().error(f"[Resource Tree Update] {error_msg}")
+            self.lab_logger().error(f"[资源同步] {error_msg}")
             res.response = json.dumps({"success": False, "error": error_msg}, ensure_ascii=False)
         except Exception as e:
             error_msg = f"Unexpected error: {str(e)}"
-            self.lab_logger().error(f"[Resource Tree Update] {error_msg}")
+            self.lab_logger().error(f"[资源同步] {error_msg}")
             self.lab_logger().error(traceback.format_exc())
             res.response = json.dumps({"success": False, "error": error_msg}, ensure_ascii=False)
 
@@ -1241,7 +1302,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 ACTION, action_paramtypes = self.get_real_function(self.driver_instance, action_name)
 
             action_kwargs = convert_from_ros_msg_with_mapping(goal, action_value_mapping["goal"])
-            self.lab_logger().debug(f"任务 {ACTION.__name__} 接收到原始目标: {action_kwargs}")
+            self.lab_logger().debug(f"任务 {ACTION.__name__} 接收到原始目标: {str(action_kwargs)[:1000]}")
+            self.lab_logger().trace(f"任务 {ACTION.__name__} 接收到原始目标: {action_kwargs}")
             error_skip = False
             # 向Host查询物料当前状态，如果是host本身的增加物料的请求，则直接跳过
             if action_name not in ["create_resource_detailed", "create_resource"]:
@@ -1257,9 +1319,14 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                             # 批量查询资源
                             queried_resources = []
                             for resource_data in resource_inputs:
-                                plr_resource = await self.get_resource_with_dir(
-                                    resource_id=resource_data["id"], with_children=True
-                                )
+                                unilabos_uuid = resource_data.get("data", {}).get("unilabos_uuid")
+                                if unilabos_uuid is None:
+                                    plr_resource = await self.get_resource_with_dir(
+                                        resource_id=resource_data["id"], with_children=True
+                                    )
+                                else:
+                                    resource_tree = await self.get_resource([unilabos_uuid])
+                                    plr_resource = resource_tree.to_plr_resources()[0]
                                 if "sample_id" in resource_data:
                                     plr_resource.unilabos_extra["sample_uuid"] = resource_data["sample_id"]
                                 queried_resources.append(plr_resource)
@@ -1308,9 +1375,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                                 execution_success = True
                             except Exception as _:
                                 execution_error = traceback.format_exc()
-                                error(
-                                    f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入：{action_kwargs}"
-                                )
+                                error(f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入：{str(action_kwargs)[:1000]}")
+                                trace(f"异步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入：{action_kwargs}")
 
                         future = ROS2DeviceNode.run_async_func(ACTION, trace_error=False, **action_kwargs)
                         future.add_done_callback(_handle_future_exception)
@@ -1330,8 +1396,9 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                         except Exception as _:
                             execution_error = traceback.format_exc()
                             error(
-                                f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入：{action_kwargs}"
-                            )
+                                f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入：{str(action_kwargs)[:1000]}")
+                            trace(
+                                f"同步任务 {ACTION.__name__} 报错了\n{traceback.format_exc()}\n原始输入：{action_kwargs}")
 
                     future.add_done_callback(_handle_future_exception)
 
@@ -1399,7 +1466,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                                 for r in rs:
                                     res = self.resource_tracker.parent_resource(r)  # 获取 resource 对象
                             else:
-                                res = self.resource_tracker.parent_resource(r)
+                                res = self.resource_tracker.parent_resource(rs)
                             if id(res) not in seen:
                                 seen.add(id(res))
                                 unique_resources.append(res)
@@ -1475,8 +1542,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                     resource_data = function_args[arg_name]
                     if isinstance(resource_data, dict) and "id" in resource_data:
                         try:
-                            converted_resource = self._convert_resource_sync(resource_data)
-                            function_args[arg_name] = converted_resource
+                            function_args[arg_name] = self._convert_resources_sync(resource_data["uuid"])[0]
                         except Exception as e:
                             self.lab_logger().error(
                                 f"转换ResourceSlot参数 {arg_name} 失败: {e}\n{traceback.format_exc()}"
@@ -1490,12 +1556,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                         resource_list = function_args[arg_name]
                         if isinstance(resource_list, list):
                             try:
-                                converted_resources = []
-                                for resource_data in resource_list:
-                                    if isinstance(resource_data, dict) and "id" in resource_data:
-                                        converted_resource = self._convert_resource_sync(resource_data)
-                                        converted_resources.append(converted_resource)
-                                function_args[arg_name] = converted_resources
+                                uuids = [r["uuid"] for r in resource_list if isinstance(r, dict) and "id" in r]
+                                function_args[arg_name] = self._convert_resources_sync(*uuids) if uuids else []
                             except Exception as e:
                                 self.lab_logger().error(
                                     f"转换ResourceSlot列表参数 {arg_name} 失败: {e}\n{traceback.format_exc()}"
@@ -1508,20 +1570,27 @@ class BaseROS2DeviceNode(Node, Generic[T]):
                 f"执行动作时JSON缺少function_name或function_args: {ex}\n原JSON: {string}\n{traceback.format_exc()}"
             )
 
-    def _convert_resource_sync(self, resource_data: Dict[str, Any]):
-        """同步转换资源数据为实例"""
-        # 创建资源查询请求
-        r = SerialCommand.Request()
-        r.command = json.dumps(
-            {
-                "id": resource_data.get("id", None),
-                "uuid": resource_data.get("uuid", None),
-                "with_children": True,
-            }
-        )
+    def _convert_resources_sync(self, *uuids: str) -> List["ResourcePLR"]:
+        """同步转换资源 UUID 为实例
 
-        # 同步调用资源查询服务
-        future = self._resource_clients["resource_get"].call_async(r)
+        Args:
+            *uuids: 一个或多个资源 UUID
+
+        Returns:
+            单个 UUID 时返回单个资源实例，多个 UUID 时返回资源实例列表
+        """
+        if not uuids:
+            raise ValueError("至少需要提供一个 UUID")
+
+        uuids_list = list(uuids)
+        future = self._resource_clients["c2s_update_resource_tree"].call_async(SerialCommand.Request(
+            command=json.dumps(
+                {
+                    "data": {"data": uuids_list, "with_children": True},
+                    "action": "get",
+                }
+            )
+        ))
 
         # 等待结果（使用while循环，每次sleep 0.05秒，最多等待30秒）
         timeout = 30.0
@@ -1531,27 +1600,40 @@ class BaseROS2DeviceNode(Node, Generic[T]):
             elapsed += 0.05
 
         if not future.done():
-            raise Exception(f"资源查询超时: {resource_data}")
+            raise Exception(f"资源查询超时: {uuids_list}")
 
         response = future.result()
         if response is None:
-            raise Exception(f"资源查询返回空结果: {resource_data}")
+            raise Exception(f"资源查询返回空结果: {uuids_list}")
 
         raw_data = json.loads(response.response)
 
         # 转换为 PLR 资源
         tree_set = ResourceTreeSet.from_raw_dict_list(raw_data)
-        plr_resource = tree_set.to_plr_resources()[0]
+        if not len(tree_set.trees):
+            raise Exception(f"资源查询返回空树: {raw_data}")
+        plr_resources = tree_set.to_plr_resources()
 
         # 通过资源跟踪器获取本地实例
-        res = self.resource_tracker.figure_resource(plr_resource, try_mode=True)
-        if len(res) == 0:
-            self.lab_logger().warning(f"资源转换未能索引到实例: {resource_data}，返回新建实例")
-            return plr_resource
-        elif len(res) == 1:
-            return res[0]
-        else:
-            raise ValueError(f"资源转换得到多个实例: {res}")
+        figured_resources: List[ResourcePLR] = []
+        for plr_resource, tree in zip(plr_resources, tree_set.trees):
+            res = self.resource_tracker.figure_resource(plr_resource, try_mode=True)
+            if len(res) == 0:
+                self.lab_logger().warning(f"资源转换未能索引到实例: {tree.root_node.res_content}，返回新建实例")
+                figured_resources.append(plr_resource)
+            elif len(res) == 1:
+                figured_resources.append(res[0])
+            else:
+                raise ValueError(f"资源转换得到多个实例: {res}")
+
+        mapped_plr_resources = []
+        for uuid in uuids_list:
+            for plr_resource in figured_resources:
+                r = self.resource_tracker.loop_find_with_uuid(plr_resource, uuid)
+                mapped_plr_resources.append(r)
+                break
+
+        return mapped_plr_resources
 
     async def _execute_driver_command_async(self, string: str):
         try:
@@ -1765,6 +1847,7 @@ class ROS2DeviceNode:
             or driver_class.__name__ == "LiquidHandlerBiomek"
             or driver_class.__name__ == "PRCXI9300Handler"
             or driver_class.__name__ == "TransformXYZHandler"
+            or driver_class.__name__ == "OpcUaClient"
         )
 
         # 创建设备类实例

unilabos/ros/nodes/presets/host_node.py

@@ -10,7 +10,6 @@ from typing import TYPE_CHECKING, Optional, Dict, Any, List, ClassVar, Set, Type
 from action_msgs.msg import GoalStatus
 from geometry_msgs.msg import Point
 from rclpy.action import ActionClient, get_action_server_names_and_types_by_node
-from rclpy.callback_groups import ReentrantCallbackGroup
 from rclpy.service import Service
 from unilabos_msgs.msg import Resource  # type: ignore
 from unilabos_msgs.srv import (
@@ -19,12 +18,12 @@ from unilabos_msgs.srv import (
     ResourceUpdate,
     ResourceList,
     SerialCommand,
-    ResourceGet,
 )  # type: ignore
 from unilabos_msgs.srv._serial_command import SerialCommand_Request, SerialCommand_Response
 from unique_identifier_msgs.msg import UUID
 
 from unilabos.registry.registry import lab_registry
+from unilabos.resources.container import RegularContainer
 from unilabos.resources.graphio import initialize_resource
 from unilabos.resources.registry import add_schema
 from unilabos.ros.initialize_device import initialize_device_from_dict
@@ -37,7 +36,7 @@ from unilabos.ros.msgs.message_converter import (
 )
 from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, ROS2DeviceNode, DeviceNodeResourceTracker
 from unilabos.ros.nodes.presets.controller_node import ControllerNode
-from unilabos.ros.nodes.resource_tracker import (
+from unilabos.resources.resource_tracker import (
     ResourceDict,
     ResourceDictInstance,
     ResourceTreeSet,
@@ -72,6 +71,8 @@ class HostNode(BaseROS2DeviceNode):
 
     _instance: ClassVar[Optional["HostNode"]] = None
     _ready_event: ClassVar[threading.Event] = threading.Event()
+    _shutting_down: ClassVar[bool] = False  # Flag to signal shutdown to background threads
+    _background_threads: ClassVar[List[threading.Thread]] = []  # Track all background threads for cleanup
     _device_action_status: ClassVar[collections.defaultdict[str, DeviceActionStatus]] = collections.defaultdict(
         DeviceActionStatus
     )
@@ -83,6 +84,48 @@ class HostNode(BaseROS2DeviceNode):
             return cls._instance
         return None
 
+    @classmethod
+    def shutdown_background_threads(cls, timeout: float = 5.0) -> None:
+        """
+        Gracefully shutdown all background threads for clean exit or restart.
+
+        This method:
+        1. Sets shutdown flag to stop background operations
+        2. Waits for background threads to finish with timeout
+        3. Cleans up finished threads from tracking list
+
+        Args:
+            timeout: Maximum time to wait for each thread (seconds)
+        """
+        cls._shutting_down = True
+
+        # Wait for background threads to finish
+        active_threads = []
+        for t in cls._background_threads:
+            if t.is_alive():
+                t.join(timeout=timeout)
+                if t.is_alive():
+                    active_threads.append(t.name)
+
+        if active_threads:
+            logger.warning(f"[Host Node] Some background threads still running: {active_threads}")
+
+        # Clear the thread list
+        cls._background_threads.clear()
+        logger.info(f"[Host Node] Background threads shutdown complete")
+
+    @classmethod
+    def reset_state(cls) -> None:
+        """
+        Reset the HostNode singleton state for restart or clean exit.
+        Call this after destroying the instance.
+        """
+        cls._instance = None
+        cls._ready_event.clear()
+        cls._shutting_down = False
+        cls._background_threads.clear()
+        logger.info("[Host Node] State reset complete")
+
     def __init__(
         self,
         device_id: str,
@@ -296,12 +339,36 @@ class HostNode(BaseROS2DeviceNode):
                 bridge.publish_host_ready()
                 self.lab_logger().debug(f"Host ready signal sent via {bridge.__class__.__name__}")
 
-    def _send_re_register(self, sclient):
-        sclient.wait_for_service()
-        request = SerialCommand.Request()
-        request.command = ""
-        future = sclient.call_async(request)
-        response = future.result()
+    def _send_re_register(self, sclient, device_namespace: str):
+        """
+        Send re-register command to a device. This is a one-time operation.
+
+        Args:
+            sclient: The service client
+            device_namespace: The device namespace for logging
+        """
+        try:
+            # Use timeout to prevent indefinite blocking
+            if not sclient.wait_for_service(timeout_sec=10.0):
+                self.lab_logger().debug(f"[Host Node] Re-register timeout for {device_namespace}")
+                return
+
+            # Check shutdown flag after wait
+            if self._shutting_down:
+                self.lab_logger().debug(f"[Host Node] Re-register aborted for {device_namespace} (shutdown)")
+                return
+
+            request = SerialCommand.Request()
+            request.command = ""
+            future = sclient.call_async(request)
+            # Use timeout for result as well
+            future.result()
+        except Exception as e:
+            # Gracefully handle destruction during shutdown
+            if "destruction was requested" in str(e) or self._shutting_down:
+                self.lab_logger().debug(f"[Host Node] Re-register aborted for {device_namespace} (cleanup)")
+            else:
+                self.lab_logger().warning(f"[Host Node] Re-register failed for {device_namespace}: {e}")
 
     def _discover_devices(self) -> None:
         """
@@ -333,23 +400,27 @@ class HostNode(BaseROS2DeviceNode):
                 self._create_action_clients_for_device(device_id, namespace)
                 self._online_devices.add(device_key)
                 sclient = self.create_client(SerialCommand, f"/srv{namespace}/re_register_device")
-                threading.Thread(
+                t = threading.Thread(
                     target=self._send_re_register,
-                    args=(sclient,),
+                    args=(sclient, namespace),
                     daemon=True,
                     name=f"ROSDevice{self.device_id}_re_register_device_{namespace}",
-                ).start()
+                )
+                self._background_threads.append(t)
+                t.start()
             elif device_key not in self._online_devices:
                 # 设备重新上线
                 self.lab_logger().info(f"[Host Node] Device reconnected: {device_key}")
                 self._online_devices.add(device_key)
                 sclient = self.create_client(SerialCommand, f"/srv{namespace}/re_register_device")
-                threading.Thread(
+                t = threading.Thread(
                     target=self._send_re_register,
-                    args=(sclient,),
+                    args=(sclient, namespace),
                     daemon=True,
                     name=f"ROSDevice{self.device_id}_re_register_device_{namespace}",
-                ).start()
+                )
+                self._background_threads.append(t)
+                t.start()
 
         # 检测离线设备
         offline_devices = self._online_devices - current_devices
@@ -515,11 +586,10 @@ class HostNode(BaseROS2DeviceNode):
         )
 
         try:
-            new_li = []
+            assert len(response) == 1, "Create Resource应当只返回一个结果"
             for i in response:
                 res = json.loads(i)
-                new_li.append(res)
-            return {"resources": new_li, "liquid_input_resources": new_li}
+                return res
         except Exception as ex:
             pass
         _n = "\n"
@@ -707,13 +777,14 @@ class HostNode(BaseROS2DeviceNode):
             raise ValueError(f"ActionClient {action_id} not found.")
 
         action_client: ActionClient = self._action_clients[action_id]
+
         # 遍历action_kwargs下的所有子dict，将"sample_uuid"的值赋给"sample_id"
         def assign_sample_id(obj):
             if isinstance(obj, dict):
                 if "sample_uuid" in obj:
                     obj["sample_id"] = obj["sample_uuid"]
                     obj.pop("sample_uuid")
-                for k,v in obj.items():
+                for k, v in obj.items():
                     if k != "unilabos_extra":
                         assign_sample_id(v)
             elif isinstance(obj, list):
@@ -723,7 +794,8 @@ class HostNode(BaseROS2DeviceNode):
         assign_sample_id(action_kwargs)
         goal_msg = convert_to_ros_msg(action_client._action_type.Goal(), action_kwargs)
 
-        self.lab_logger().info(f"[Host Node] Sending goal for {action_id}: {goal_msg}")
+        self.lab_logger().info(f"[Host Node] Sending goal for {action_id}: {str(goal_msg)[:1000]}")
+        self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {goal_msg}")
         action_client.wait_for_server()
         goal_uuid_obj = UUID(uuid=list(u.bytes))
 
@@ -744,9 +816,7 @@ class HostNode(BaseROS2DeviceNode):
         self.lab_logger().info(f"[Host Node] Goal {action_id} ({item.job_id}) accepted")
         self._goals[item.job_id] = goal_handle
         goal_future = goal_handle.get_result_async()
-        goal_future.add_done_callback(
-            lambda f: self.get_result_callback(item, action_id, f)
-        )
+        goal_future.add_done_callback(lambda f: self.get_result_callback(item, action_id, f))
         goal_future.result()
 
     def feedback_callback(self, item: "QueueItem", action_id: str, feedback_msg) -> None:
@@ -1063,11 +1133,11 @@ class HostNode(BaseROS2DeviceNode):
 
         接收序列化的 ResourceTreeSet 数据并进行处理
         """
-        self.lab_logger().info(f"[Host Node-Resource] Resource tree add request received")
         try:
             # 解析请求数据
             data = json.loads(request.command)
             action = data["action"]
+            self.lab_logger().info(f"[Host Node-Resource] Resource tree {action} request received")
             data = data["data"]
             if action == "add":
                 await self._resource_tree_action_add_callback(data, response)
@@ -1168,11 +1238,13 @@ class HostNode(BaseROS2DeviceNode):
             响应对象，包含查询到的资源
         """
         try:
+            from unilabos.app.web import http_client
+
             data = json.loads(request.command)
             if "uuid" in data and data["uuid"] is not None:
-                http_req = self.bridges[-1].resource_tree_get([data["uuid"]], data["with_children"])
-            elif "id" in data and data["id"].startswith("/"):
-                http_req = self.bridges[-1].resource_get(data["id"], data["with_children"])
+                http_req = http_client.resource_tree_get([data["uuid"]], data["with_children"])
+            elif "id" in data:
+                http_req = http_client.resource_get(data["id"], data["with_children"])
             else:
                 raise ValueError("没有使用正确的物料 id 或 uuid")
             response.response = json.dumps(http_req["data"])
@@ -1381,10 +1453,16 @@ class HostNode(BaseROS2DeviceNode):
         }
 
     def test_resource(
-        self, resource: ResourceSlot, resources: List[ResourceSlot], device: DeviceSlot, devices: List[DeviceSlot]
+        self, resource: ResourceSlot = None, resources: List[ResourceSlot] = None, device: DeviceSlot = None, devices: List[DeviceSlot] = None
     ) -> TestResourceReturn:
+        if resources is None:
+            resources = []
+        if devices is None:
+            devices = []
+        if resource is None:
+            resource = RegularContainer("test_resource传入None")
         return {
-            "resources": ResourceTreeSet.from_plr_resources([resource, *resources]).dump(),
+            "resources": ResourceTreeSet.from_plr_resources([resource, *resources], known_newly_created=True).dump(),
             "devices": [device, *devices],
         }
 
@@ -1436,7 +1514,7 @@ class HostNode(BaseROS2DeviceNode):
 
             # 构建服务地址
             srv_address = f"/srv{namespace}/s2c_resource_tree"
-            self.lab_logger().info(f"[Host Node-Resource] Notifying {device_id} for resource tree {action} operation")
+            self.lab_logger().trace(f"[Host Node-Resource] Host -> {device_id} ResourceTree {action} operation started -------")
 
             # 创建服务客户端
             sclient = self.create_client(SerialCommand, srv_address)
@@ -1471,9 +1549,7 @@ class HostNode(BaseROS2DeviceNode):
                 time.sleep(0.05)
 
             response = future.result()
-            self.lab_logger().info(
-                f"[Host Node-Resource] Resource tree {action} notification completed for {device_id}"
-            )
+            self.lab_logger().trace(f"[Host Node-Resource] Host -> {device_id} ResourceTree {action} operation completed -------")
             return True
 
         except Exception as e:

unilabos/ros/nodes/presets/workstation.py

@@ -12,11 +12,10 @@ from unilabos_msgs.srv import ResourceUpdate
 from unilabos.messages import *  # type: ignore  # protocol names
 from rclpy.action import ActionServer, ActionClient
 from rclpy.action.server import ServerGoalHandle
-from rclpy.callback_groups import ReentrantCallbackGroup
 from unilabos_msgs.srv._serial_command import SerialCommand_Request, SerialCommand_Response
 
 from unilabos.compile import action_protocol_generators
-from unilabos.resources.graphio import list_to_nested_dict, nested_dict_to_list
+from unilabos.resources.graphio import nested_dict_to_list
 from unilabos.ros.initialize_device import initialize_device_from_dict
 from unilabos.ros.msgs.message_converter import (
     get_action_type,
@@ -24,7 +23,7 @@ from unilabos.ros.msgs.message_converter import (
     convert_from_ros_msg_with_mapping,
 )
 from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, DeviceNodeResourceTracker, ROS2DeviceNode
-from unilabos.ros.nodes.resource_tracker import ResourceTreeSet, ResourceDictInstance
+from unilabos.resources.resource_tracker import ResourceTreeSet, ResourceDictInstance
 from unilabos.utils.type_check import get_result_info_str
 
 if TYPE_CHECKING:

unilabos/ros/utils/driver_creator.py

@@ -11,10 +11,9 @@ import traceback
 from abc import abstractmethod
 from typing import Type, Any, Dict, Optional, TypeVar, Generic, List
 
-from unilabos.resources.graphio import nested_dict_to_list, resource_ulab_to_plr
-from unilabos.ros.nodes.resource_tracker import DeviceNodeResourceTracker, ResourceTreeSet, ResourceDictInstance, \
+from unilabos.resources.resource_tracker import DeviceNodeResourceTracker, ResourceTreeSet, ResourceDictInstance, \
     ResourceTreeInstance
-from unilabos.utils import logger, import_manager
+from unilabos.utils import logger
 from unilabos.utils.cls_creator import create_instance_from_config
 
 # 定义泛型类型变量
@@ -135,7 +134,7 @@ class PyLabRobotCreator(DeviceClassCreator[T]):
         Returns:
             处理后的数据
         """
-        from pylabrobot.resources import Deck, Resource
+        from pylabrobot.resources import Resource
 
         if states is None:
             states = {}

unilabos/test/experiments/reaction_station_bioyond.json

@@ -14,7 +14,11 @@
             ],
             "type": "device",
             "class": "reaction_station.bioyond",
-            "position": {"x": 0, "y": 3800, "z": 0},
+            "position": {
+                "x": 0,
+                "y": 1100,
+                "z": 0
+            },
             "config": {
                 "config": {
                     "api_key": "DE9BDDA0",
@@ -57,6 +61,10 @@
                         "BIOYOND_PolymerStation_TipBox": [
                             "枪头盒",
                             "3a143890-9d51-60ac-6d6f-6edb43c12041"
+                        ],
+                        "BIOYOND_PolymerStation_Measurement_Vial": [
+                            "测量小瓶",
+                            "b1fc79c9-5864-4f05-8052-6ed3abc18a97"
                         ]
                     }
                 },
@@ -66,6 +74,9 @@
                         "_resource_type": "unilabos.resources.bioyond.decks:BIOYOND_PolymerReactionStation_Deck"
                     }
                 },
+                "size_x": 2700.0,
+                "size_y": 1080.0,
+                "size_z": 2000.0,
                 "protocol_type": []
             },
             "data": {}
@@ -77,7 +88,11 @@
             "parent": "reaction_station_bioyond",
             "type": "device",
             "class": "reaction_station.reactor",
-            "position": {"x": 1150, "y": 380, "z": 0},
+            "position": {
+                "x": 1150,
+                "y": 380,
+                "z": 0
+            },
             "config": {},
             "data": {}
         },
@@ -88,7 +103,11 @@
             "parent": "reaction_station_bioyond",
             "type": "device",
             "class": "reaction_station.reactor",
-            "position": {"x": 1365, "y": 380, "z": 0},
+            "position": {
+                "x": 1365,
+                "y": 380,
+                "z": 0
+            },
             "config": {},
             "data": {}
         },
@@ -99,7 +118,11 @@
             "parent": "reaction_station_bioyond",
             "type": "device",
             "class": "reaction_station.reactor",
-            "position": {"x": 1580, "y": 380, "z": 0},
+            "position": {
+                "x": 1580,
+                "y": 380,
+                "z": 0
+            },
             "config": {},
             "data": {}
         },
@@ -110,7 +133,11 @@
             "parent": "reaction_station_bioyond",
             "type": "device",
             "class": "reaction_station.reactor",
-            "position": {"x": 1790, "y": 380, "z": 0},
+            "position": {
+                "x": 1790,
+                "y": 380,
+                "z": 0
+            },
             "config": {},
             "data": {}
         },
@@ -121,7 +148,11 @@
             "parent": "reaction_station_bioyond",
             "type": "device",
             "class": "reaction_station.reactor",
-            "position": {"x": 2010, "y": 380, "z": 0},
+            "position": {
+                "x": 2010,
+                "y": 380,
+                "z": 0
+            },
             "config": {},
             "data": {}
         },
@@ -134,7 +165,7 @@
             "class": "BIOYOND_PolymerReactionStation_Deck",
             "position": {
                 "x": 0,
-                "y": 0,
+                "y": 1100,
                 "z": 0
             },
             "config": {

unilabos/workflow/common.py

@@ -0,0 +1,547 @@
+import re
+import uuid
+
+import networkx as nx
+from networkx.drawing.nx_agraph import to_agraph
+import matplotlib.pyplot as plt
+from typing import Dict, List, Any, Tuple, Optional
+
+Json = Dict[str, Any]
+
+# ---------------- Graph ----------------
+
+
+class WorkflowGraph:
+    """简单的有向图实现：使用 params 单层参数；inputs 内含连线；支持 node-link 导出"""
+
+    def __init__(self):
+        self.nodes: Dict[str, Dict[str, Any]] = {}
+        self.edges: List[Dict[str, Any]] = []
+
+    def add_node(self, node_id: str, **attrs):
+        self.nodes[node_id] = attrs
+
+    def add_edge(self, source: str, target: str, **attrs):
+        # 将 source_port/target_port 映射为服务端期望的 source_handle_key/target_handle_key
+        source_handle_key = attrs.pop("source_port", "") or attrs.pop("source_handle_key", "")
+        target_handle_key = attrs.pop("target_port", "") or attrs.pop("target_handle_key", "")
+
+        edge = {
+            "source": source,
+            "target": target,
+            "source_node_uuid": source,
+            "target_node_uuid": target,
+            "source_handle_key": source_handle_key,
+            "source_handle_io": attrs.pop("source_handle_io", "source"),
+            "target_handle_key": target_handle_key,
+            "target_handle_io": attrs.pop("target_handle_io", "target"),
+            **attrs,
+        }
+        self.edges.append(edge)
+
+    def _materialize_wiring_into_inputs(
+        self,
+        obj: Any,
+        inputs: Dict[str, Any],
+        variable_sources: Dict[str, Dict[str, Any]],
+        target_node_id: str,
+        base_path: List[str],
+    ):
+        has_var = False
+
+        def walk(node: Any, path: List[str]):
+            nonlocal has_var
+            if isinstance(node, dict):
+                if "__var__" in node:
+                    has_var = True
+                    varname = node["__var__"]
+                    placeholder = f"${{{varname}}}"
+                    src = variable_sources.get(varname)
+                    if src:
+                        key = ".".join(path)  # e.g. "params.foo.bar.0"
+                        inputs[key] = {"node": src["node_id"], "output": src.get("output_name", "result")}
+                        self.add_edge(
+                            str(src["node_id"]),
+                            target_node_id,
+                            source_handle_io=src.get("output_name", "result"),
+                            target_handle_io=key,
+                        )
+                    return placeholder
+                return {k: walk(v, path + [k]) for k, v in node.items()}
+            if isinstance(node, list):
+                return [walk(v, path + [str(i)]) for i, v in enumerate(node)]
+            return node
+
+        replaced = walk(obj, base_path[:])
+        return replaced, has_var
+
+    def add_workflow_node(
+        self,
+        node_id: int,
+        *,
+        device_key: Optional[str] = None,  # 实例名，如 "ser"
+        resource_name: Optional[str] = None,  # registry key（原 device_class）
+        module: Optional[str] = None,
+        template_name: Optional[str] = None,  # 动作/模板名（原 action_key）
+        params: Dict[str, Any],
+        variable_sources: Dict[str, Dict[str, Any]],
+        add_ready_if_no_vars: bool = True,
+        prev_node_id: Optional[int] = None,
+        **extra_attrs,
+    ) -> None:
+        """添加工作流节点：params 单层；自动变量连线与 ready 串联；支持附加属性"""
+        node_id_str = str(node_id)
+        inputs: Dict[str, Any] = {}
+
+        params, has_var = self._materialize_wiring_into_inputs(
+            params, inputs, variable_sources, node_id_str, base_path=["params"]
+        )
+
+        if add_ready_if_no_vars and not has_var:
+            last_id = str(prev_node_id) if prev_node_id is not None else "-1"
+            inputs["ready"] = {"node": int(last_id), "output": "ready"}
+            self.add_edge(last_id, node_id_str, source_handle_io="ready", target_handle_io="ready")
+
+        node_obj = {
+            "device_key": device_key,
+            "resource_name": resource_name,  # ✅ 新名字
+            "module": module,
+            "template_name": template_name,  # ✅ 新名字
+            "params": params,
+            "inputs": inputs,
+        }
+        node_obj.update(extra_attrs or {})
+        self.add_node(node_id_str, parameters=node_obj)
+
+    # 顺序工作流导出（连线在 inputs，不返回 edges）
+    def to_dict(self) -> List[Dict[str, Any]]:
+        result = []
+        for node_id, attrs in self.nodes.items():
+            node = {"uuid": node_id}
+            params = dict(attrs.get("parameters", {}) or {})
+            flat = {k: v for k, v in attrs.items() if k != "parameters"}
+            flat.update(params)
+            node.update(flat)
+            result.append(node)
+        return sorted(result, key=lambda n: int(n["uuid"]) if str(n["uuid"]).isdigit() else n["uuid"])
+
+    # node-link 导出（含 edges）
+    def to_node_link_dict(self) -> Dict[str, Any]:
+        nodes_list = []
+        for node_id, attrs in self.nodes.items():
+            node_attrs = attrs.copy()
+            params = node_attrs.pop("parameters", {}) or {}
+            node_attrs.update(params)
+            nodes_list.append({"uuid": node_id, **node_attrs})
+        return {
+            "directed": True,
+            "multigraph": False,
+            "graph": {},
+            "nodes": nodes_list,
+            "edges": self.edges,
+            "links": self.edges,
+        }
+
+
+def refactor_data(
+    data: List[Dict[str, Any]],
+    action_resource_mapping: Optional[Dict[str, str]] = None,
+) -> List[Dict[str, Any]]:
+    """统一的数据重构函数，根据操作类型自动选择模板
+
+    Args:
+        data: 原始步骤数据列表
+        action_resource_mapping: action 到 resource_name 的映射字典，可选
+    """
+    refactored_data = []
+
+    # 定义操作映射，包含生物实验和有机化学的所有操作
+    OPERATION_MAPPING = {
+        # 生物实验操作
+        "transfer_liquid": "transfer_liquid",
+        "transfer": "transfer",
+        "incubation": "incubation",
+        "move_labware": "move_labware",
+        "oscillation": "oscillation",
+        # 有机化学操作
+        "HeatChillToTemp": "HeatChillProtocol",
+        "StopHeatChill": "HeatChillStopProtocol",
+        "StartHeatChill": "HeatChillStartProtocol",
+        "HeatChill": "HeatChillProtocol",
+        "Dissolve": "DissolveProtocol",
+        "Transfer": "TransferProtocol",
+        "Evaporate": "EvaporateProtocol",
+        "Recrystallize": "RecrystallizeProtocol",
+        "Filter": "FilterProtocol",
+        "Dry": "DryProtocol",
+        "Add": "AddProtocol",
+    }
+
+    UNSUPPORTED_OPERATIONS = ["Purge", "Wait", "Stir", "ResetHandling"]
+
+    for step in data:
+        operation = step.get("action")
+        if not operation or operation in UNSUPPORTED_OPERATIONS:
+            continue
+
+        # 处理重复操作
+        if operation == "Repeat":
+            times = step.get("times", step.get("parameters", {}).get("times", 1))
+            sub_steps = step.get("steps", step.get("parameters", {}).get("steps", []))
+            for i in range(int(times)):
+                sub_data = refactor_data(sub_steps, action_resource_mapping)
+                refactored_data.extend(sub_data)
+            continue
+
+        # 获取模板名称
+        template_name = OPERATION_MAPPING.get(operation)
+        if not template_name:
+            # 自动推断模板类型
+            if operation.lower() in ["transfer", "incubation", "move_labware", "oscillation"]:
+                template_name = f"biomek-{operation}"
+            else:
+                template_name = f"{operation}Protocol"
+
+        # 获取 resource_name
+        resource_name = f"device.{operation.lower()}"
+        if action_resource_mapping:
+            resource_name = action_resource_mapping.get(operation, resource_name)
+
+        # 获取步骤编号，生成 name 字段
+        step_number = step.get("step_number")
+        name = f"Step {step_number}" if step_number is not None else None
+
+        # 创建步骤数据
+        step_data = {
+            "template_name": template_name,
+            "resource_name": resource_name,
+            "description": step.get("description", step.get("purpose", f"{operation} operation")),
+            "lab_node_type": "Device",
+            "param": step.get("parameters", step.get("action_args", {})),
+            "footer": f"{template_name}-{resource_name}",
+        }
+        if name:
+            step_data["name"] = name
+        refactored_data.append(step_data)
+
+    return refactored_data
+
+
+def build_protocol_graph(
+    labware_info: List[Dict[str, Any]],
+    protocol_steps: List[Dict[str, Any]],
+    workstation_name: str,
+    action_resource_mapping: Optional[Dict[str, str]] = None,
+) -> WorkflowGraph:
+    """统一的协议图构建函数，根据设备类型自动选择构建逻辑
+
+    Args:
+        labware_info: labware 信息字典
+        protocol_steps: 协议步骤列表
+        workstation_name: 工作站名称
+        action_resource_mapping: action 到 resource_name 的映射字典，可选
+    """
+    G = WorkflowGraph()
+    resource_last_writer = {}
+
+    protocol_steps = refactor_data(protocol_steps, action_resource_mapping)
+    # 有机化学&移液站协议图构建
+    WORKSTATION_ID = workstation_name
+
+    # 为所有labware创建资源节点
+    res_index = 0
+    for labware_id, item in labware_info.items():
+        # item_id = item.get("id") or item.get("name", f"item_{uuid.uuid4()}")
+        node_id = str(uuid.uuid4())
+
+        # 判断节点类型
+        if "Rack" in str(labware_id) or "Tip" in str(labware_id):
+            lab_node_type = "Labware"
+            description = f"Prepare Labware: {labware_id}"
+            liquid_type = []
+            liquid_volume = []
+        elif item.get("type") == "hardware" or "reactor" in str(labware_id).lower():
+            if "reactor" not in str(labware_id).lower():
+                continue
+            lab_node_type = "Sample"
+            description = f"Prepare Reactor: {labware_id}"
+            liquid_type = []
+            liquid_volume = []
+        else:
+            lab_node_type = "Reagent"
+            description = f"Add Reagent to Flask: {labware_id}"
+            liquid_type = [labware_id]
+            liquid_volume = [1e5]
+
+        res_index += 1
+        G.add_node(
+            node_id,
+            template_name="create_resource",
+            resource_name="host_node",
+            name=f"Res {res_index}",
+            description=description,
+            lab_node_type=lab_node_type,
+            footer="create_resource-host_node",
+            param={
+                "res_id": labware_id,
+                "device_id": WORKSTATION_ID,
+                "class_name": "container",
+                "parent": WORKSTATION_ID,
+                "bind_locations": {"x": 0.0, "y": 0.0, "z": 0.0},
+                "liquid_input_slot": [-1],
+                "liquid_type": liquid_type,
+                "liquid_volume": liquid_volume,
+                "slot_on_deck": "",
+            },
+        )
+        resource_last_writer[labware_id] = f"{node_id}:labware"
+
+    last_control_node_id = None
+
+    # 处理协议步骤
+    for step in protocol_steps:
+        node_id = str(uuid.uuid4())
+        G.add_node(node_id, **step)
+
+        # 控制流
+        if last_control_node_id is not None:
+            G.add_edge(last_control_node_id, node_id, source_port="ready", target_port="ready")
+        last_control_node_id = node_id
+
+        # 物料流
+        params = step.get("param", {})
+        input_resources_possible_names = [
+            "vessel",
+            "to_vessel",
+            "from_vessel",
+            "reagent",
+            "solvent",
+            "compound",
+            "sources",
+            "targets",
+        ]
+
+        for target_port in input_resources_possible_names:
+            resource_name = params.get(target_port)
+            if resource_name and resource_name in resource_last_writer:
+                source_node, source_port = resource_last_writer[resource_name].split(":")
+                G.add_edge(source_node, node_id, source_port=source_port, target_port=target_port)
+
+        output_resources = {
+            "vessel_out": params.get("vessel"),
+            "from_vessel_out": params.get("from_vessel"),
+            "to_vessel_out": params.get("to_vessel"),
+            "filtrate_out": params.get("filtrate_vessel"),
+            "reagent": params.get("reagent"),
+            "solvent": params.get("solvent"),
+            "compound": params.get("compound"),
+            "sources_out": params.get("sources"),
+            "targets_out": params.get("targets"),
+        }
+
+        for source_port, resource_name in output_resources.items():
+            if resource_name:
+                resource_last_writer[resource_name] = f"{node_id}:{source_port}"
+
+    return G
+
+
+def draw_protocol_graph(protocol_graph: WorkflowGraph, output_path: str):
+    """
+    (辅助功能) 使用 networkx 和 matplotlib 绘制协议工作流图，用于可视化。
+    """
+    if not protocol_graph:
+        print("Cannot draw graph: Graph object is empty.")
+        return
+
+    G = nx.DiGraph()
+
+    for node_id, attrs in protocol_graph.nodes.items():
+        label = attrs.get("description", attrs.get("template_name", node_id[:8]))
+        G.add_node(node_id, label=label, **attrs)
+
+    for edge in protocol_graph.edges:
+        G.add_edge(edge["source"], edge["target"])
+
+    plt.figure(figsize=(20, 15))
+    try:
+        pos = nx.nx_agraph.graphviz_layout(G, prog="dot")
+    except Exception:
+        pos = nx.shell_layout(G)  # Fallback layout
+
+    node_labels = {node: data["label"] for node, data in G.nodes(data=True)}
+    nx.draw(
+        G,
+        pos,
+        with_labels=False,
+        node_size=2500,
+        node_color="skyblue",
+        node_shape="o",
+        edge_color="gray",
+        width=1.5,
+        arrowsize=15,
+    )
+    nx.draw_networkx_labels(G, pos, labels=node_labels, font_size=8, font_weight="bold")
+
+    plt.title("Chemical Protocol Workflow Graph", size=15)
+    plt.savefig(output_path, dpi=300, bbox_inches="tight")
+    plt.close()
+    print(f"  - Visualization saved to '{output_path}'")
+
+
+COMPASS = {"n", "e", "s", "w", "ne", "nw", "se", "sw", "c"}
+
+
+def _is_compass(port: str) -> bool:
+    return isinstance(port, str) and port.lower() in COMPASS
+
+
+def draw_protocol_graph_with_ports(protocol_graph, output_path: str, rankdir: str = "LR"):
+    """
+    使用 Graphviz 端口语法绘制协议工作流图。
+    - 若边上的 source_port/target_port 是 compass（n/e/s/w/...），直接用 compass。
+    - 否则自动为节点创建 record 形状并定义命名端口 <portname>。
+    最终由 PyGraphviz 渲染并输出到 output_path（后缀决定格式，如 .png/.svg/.pdf）。
+    """
+    if not protocol_graph:
+        print("Cannot draw graph: Graph object is empty.")
+        return
+
+    # 1) 先用 networkx 搭建有向图，保留端口属性
+    G = nx.DiGraph()
+    for node_id, attrs in protocol_graph.nodes.items():
+        label = attrs.get("description", attrs.get("template_name", node_id[:8]))
+        # 保留一个干净的“中心标签”，用于放在 record 的中间槽
+        G.add_node(node_id, _core_label=str(label), **{k: v for k, v in attrs.items() if k not in ("label",)})
+
+    edges_data = []
+    in_ports_by_node = {}  # 收集命名输入端口
+    out_ports_by_node = {}  # 收集命名输出端口
+
+    for edge in protocol_graph.edges:
+        u = edge["source"]
+        v = edge["target"]
+        sp = edge.get("source_handle_key") or edge.get("source_port")
+        tp = edge.get("target_handle_key") or edge.get("target_port")
+
+        # 记录到图里（保留原始端口信息）
+        G.add_edge(u, v, source_handle_key=sp, target_handle_key=tp)
+        edges_data.append((u, v, sp, tp))
+
+        # 如果不是 compass，就按“命名端口”先归类，等会儿给节点造 record
+        if sp and not _is_compass(sp):
+            out_ports_by_node.setdefault(u, set()).add(str(sp))
+        if tp and not _is_compass(tp):
+            in_ports_by_node.setdefault(v, set()).add(str(tp))
+
+    # 2) 转为 AGraph，使用 Graphviz 渲染
+    A = to_agraph(G)
+    A.graph_attr.update(rankdir=rankdir, splines="true", concentrate="false", fontsize="10")
+    A.node_attr.update(
+        shape="box", style="rounded,filled", fillcolor="lightyellow", color="#999999", fontname="Helvetica"
+    )
+    A.edge_attr.update(arrowsize="0.8", color="#666666")
+
+    # 3) 为需要命名端口的节点设置 record 形状与 label
+    #    左列 = 输入端口；中间 = 核心标签；右列 = 输出端口
+    for n in A.nodes():
+        node = A.get_node(n)
+        core = G.nodes[n].get("_core_label", n)
+
+        in_ports = sorted(in_ports_by_node.get(n, []))
+        out_ports = sorted(out_ports_by_node.get(n, []))
+
+        # 如果该节点涉及命名端口，则用 record；否则保留原 box
+        if in_ports or out_ports:
+
+            def port_fields(ports):
+                if not ports:
+                    return " "  # 必须留一个空槽占位
+                # 每个端口一个小格子，<p> name
+                return "|".join(f"<{re.sub(r'[^A-Za-z0-9_:.|-]', '_', p)}> {p}" for p in ports)
+
+            left = port_fields(in_ports)
+            right = port_fields(out_ports)
+
+            # 三栏：左(入) | 中(节点名) | 右(出)
+            record_label = f"{{ {left} | {core} | {right} }}"
+            node.attr.update(shape="record", label=record_label)
+        else:
+            # 没有命名端口：普通盒子，显示核心标签
+            node.attr.update(label=str(core))
+
+    # 4) 给边设置 headport / tailport
+    #    - 若端口为 compass：直接用 compass（e.g., headport="e"）
+    #    - 若端口为命名端口：使用在 record 中定义的 <port> 名（同名即可）
+    for u, v, sp, tp in edges_data:
+        e = A.get_edge(u, v)
+
+        # Graphviz 属性：tail 是源，head 是目标
+        if sp:
+            if _is_compass(sp):
+                e.attr["tailport"] = sp.lower()
+            else:
+                # 与 record label 中 <port> 名一致；特殊字符已在 label 中做了清洗
+                e.attr["tailport"] = re.sub(r"[^A-Za-z0-9_:.|-]", "_", str(sp))
+
+        if tp:
+            if _is_compass(tp):
+                e.attr["headport"] = tp.lower()
+            else:
+                e.attr["headport"] = re.sub(r"[^A-Za-z0-9_:.|-]", "_", str(tp))
+
+        # 可选：若想让边更贴边缘，可设置 constraint/spline 等
+        # e.attr["arrowhead"] = "vee"
+
+    # 5) 输出
+    A.draw(output_path, prog="dot")
+    print(f"  - Port-aware workflow rendered to '{output_path}'")
+
+
+# ---------------- Registry Adapter ----------------
+
+
+class RegistryAdapter:
+    """根据 module 的类名（冒号右侧）反查 registry 的 resource_name（原 device_class），并抽取参数顺序"""
+
+    def __init__(self, device_registry: Dict[str, Any]):
+        self.device_registry = device_registry or {}
+        self.module_class_to_resource = self._build_module_class_index()
+
+    def _build_module_class_index(self) -> Dict[str, str]:
+        idx = {}
+        for resource_name, info in self.device_registry.items():
+            module = info.get("module")
+            if isinstance(module, str) and ":" in module:
+                cls = module.split(":")[-1]
+                idx[cls] = resource_name
+                idx[cls.lower()] = resource_name
+        return idx
+
+    def resolve_resource_by_classname(self, class_name: str) -> Optional[str]:
+        if not class_name:
+            return None
+        return self.module_class_to_resource.get(class_name) or self.module_class_to_resource.get(class_name.lower())
+
+    def get_device_module(self, resource_name: Optional[str]) -> Optional[str]:
+        if not resource_name:
+            return None
+        return self.device_registry.get(resource_name, {}).get("module")
+
+    def get_actions(self, resource_name: Optional[str]) -> Dict[str, Any]:
+        if not resource_name:
+            return {}
+        return (self.device_registry.get(resource_name, {}).get("class", {}).get("action_value_mappings", {})) or {}
+
+    def get_action_schema(self, resource_name: Optional[str], template_name: str) -> Optional[Json]:
+        return (self.get_actions(resource_name).get(template_name) or {}).get("schema")
+
+    def get_action_goal_default(self, resource_name: Optional[str], template_name: str) -> Json:
+        return (self.get_actions(resource_name).get(template_name) or {}).get("goal_default", {}) or {}
+
+    def get_action_input_keys(self, resource_name: Optional[str], template_name: str) -> List[str]:
+        schema = self.get_action_schema(resource_name, template_name) or {}
+        goal = (schema.get("properties") or {}).get("goal") or {}
+        props = goal.get("properties") or {}
+        required = goal.get("required") or []
+        return list(dict.fromkeys(required + list(props.keys())))

unilabos/workflow/convert_from_json.py

@@ -0,0 +1,356 @@
+"""
+JSON 工作流转换模块
+
+提供从多种 JSON 格式转换为统一工作流格式的功能。
+支持的格式：
+1. workflow/reagent 格式
+2. steps_info/labware_info 格式
+"""
+
+import json
+from os import PathLike
+from pathlib import Path
+from typing import Any, Dict, List, Optional, Set, Tuple, Union
+
+from unilabos.workflow.common import WorkflowGraph, build_protocol_graph
+from unilabos.registry.registry import lab_registry
+
+
+def get_action_handles(resource_name: str, template_name: str) -> Dict[str, List[str]]:
+    """
+    从 registry 获取指定设备和动作的 handles 配置
+
+    Args:
+        resource_name: 设备资源名称，如 "liquid_handler.prcxi"
+        template_name: 动作模板名称，如 "transfer_liquid"
+
+    Returns:
+        包含 source 和 target handler_keys 的字典:
+        {"source": ["sources_out", "targets_out", ...], "target": ["sources", "targets", ...]}
+    """
+    result = {"source": [], "target": []}
+
+    device_info = lab_registry.device_type_registry.get(resource_name, {})
+    if not device_info:
+        return result
+
+    action_mappings = device_info.get("class", {}).get("action_value_mappings", {})
+    action_config = action_mappings.get(template_name, {})
+    handles = action_config.get("handles", {})
+
+    if isinstance(handles, dict):
+        # 处理 input handles (作为 target)
+        for handle in handles.get("input", []):
+            handler_key = handle.get("handler_key", "")
+            if handler_key:
+                result["source"].append(handler_key)
+        # 处理 output handles (作为 source)
+        for handle in handles.get("output", []):
+            handler_key = handle.get("handler_key", "")
+            if handler_key:
+                result["target"].append(handler_key)
+
+    return result
+
+
+def validate_workflow_handles(graph: WorkflowGraph) -> Tuple[bool, List[str]]:
+    """
+    校验工作流图中所有边的句柄配置是否正确
+
+    Args:
+        graph: 工作流图对象
+
+    Returns:
+        (is_valid, errors): 是否有效，错误信息列表
+    """
+    errors = []
+    nodes = graph.nodes
+
+    for edge in graph.edges:
+        left_uuid = edge.get("source")
+        right_uuid = edge.get("target")
+        # target_handle_key是target, right的输入节点（入节点）
+        # source_handle_key是source, left的输出节点（出节点）
+        right_source_conn_key = edge.get("target_handle_key", "")
+        left_target_conn_key = edge.get("source_handle_key", "")
+
+        # 获取源节点和目标节点信息
+        left_node = nodes.get(left_uuid, {})
+        right_node = nodes.get(right_uuid, {})
+
+        left_res_name = left_node.get("resource_name", "")
+        left_template_name = left_node.get("template_name", "")
+        right_res_name = right_node.get("resource_name", "")
+        right_template_name = right_node.get("template_name", "")
+
+        # 获取源节点的 output handles
+        left_node_handles = get_action_handles(left_res_name, left_template_name)
+        target_valid_keys = left_node_handles.get("target", [])
+        target_valid_keys.append("ready")
+
+        # 获取目标节点的 input handles
+        right_node_handles = get_action_handles(right_res_name, right_template_name)
+        source_valid_keys = right_node_handles.get("source", [])
+        source_valid_keys.append("ready")
+
+        # 如果节点配置了 output handles，则 source_port 必须有效
+        if not right_source_conn_key:
+            node_name = left_node.get("name", left_uuid[:8])
+            errors.append(f"源节点 '{node_name}' 的 source_handle_key 为空，" f"应设置为: {source_valid_keys}")
+        elif right_source_conn_key not in source_valid_keys:
+            node_name = left_node.get("name", left_uuid[:8])
+            errors.append(
+                f"源节点 '{node_name}' 的 source 端点 '{right_source_conn_key}' 不存在，" f"支持的端点: {source_valid_keys}"
+            )
+
+        # 如果节点配置了 input handles，则 target_port 必须有效
+        if not left_target_conn_key:
+            node_name = right_node.get("name", right_uuid[:8])
+            errors.append(f"目标节点 '{node_name}' 的 target_handle_key 为空，" f"应设置为: {target_valid_keys}")
+        elif left_target_conn_key not in target_valid_keys:
+            node_name = right_node.get("name", right_uuid[:8])
+            errors.append(
+                f"目标节点 '{node_name}' 的 target 端点 '{left_target_conn_key}' 不存在，"
+                f"支持的端点: {target_valid_keys}"
+            )
+
+    return len(errors) == 0, errors
+
+
+# action 到 resource_name 的映射
+ACTION_RESOURCE_MAPPING: Dict[str, str] = {
+    # 生物实验操作
+    "transfer_liquid": "liquid_handler.prcxi",
+    "transfer": "liquid_handler.prcxi",
+    "incubation": "incubator.prcxi",
+    "move_labware": "labware_mover.prcxi",
+    "oscillation": "shaker.prcxi",
+    # 有机化学操作
+    "HeatChillToTemp": "heatchill.chemputer",
+    "StopHeatChill": "heatchill.chemputer",
+    "StartHeatChill": "heatchill.chemputer",
+    "HeatChill": "heatchill.chemputer",
+    "Dissolve": "stirrer.chemputer",
+    "Transfer": "liquid_handler.chemputer",
+    "Evaporate": "rotavap.chemputer",
+    "Recrystallize": "reactor.chemputer",
+    "Filter": "filter.chemputer",
+    "Dry": "dryer.chemputer",
+    "Add": "liquid_handler.chemputer",
+}
+
+
+def normalize_steps(data: List[Dict[str, Any]]) -> List[Dict[str, Any]]:
+    """
+    将不同格式的步骤数据规范化为统一格式
+
+    支持的输入格式：
+    - action + parameters
+    - action + action_args
+    - operation + parameters
+
+    Args:
+        data: 原始步骤数据列表
+
+    Returns:
+        规范化后的步骤列表，格式为 [{"action": str, "parameters": dict, "description": str?, "step_number": int?}, ...]
+    """
+    normalized = []
+    for idx, step in enumerate(data):
+        # 获取动作名称（支持 action 或 operation 字段）
+        action = step.get("action") or step.get("operation")
+        if not action:
+            continue
+
+        # 获取参数（支持 parameters 或 action_args 字段）
+        raw_params = step.get("parameters") or step.get("action_args") or {}
+        params = dict(raw_params)
+
+        # 规范化 source/target -> sources/targets
+        if "source" in raw_params and "sources" not in raw_params:
+            params["sources"] = raw_params["source"]
+        if "target" in raw_params and "targets" not in raw_params:
+            params["targets"] = raw_params["target"]
+
+        # 获取描述（支持 description 或 purpose 字段）
+        description = step.get("description") or step.get("purpose")
+
+        # 获取步骤编号（优先使用原始数据中的 step_number，否则使用索引+1）
+        step_number = step.get("step_number", idx + 1)
+
+        step_dict = {"action": action, "parameters": params, "step_number": step_number}
+        if description:
+            step_dict["description"] = description
+
+        normalized.append(step_dict)
+
+    return normalized
+
+
+def normalize_labware(data: List[Dict[str, Any]]) -> Dict[str, Dict[str, Any]]:
+    """
+    将不同格式的 labware 数据规范化为统一的字典格式
+
+    支持的输入格式：
+    - reagent_name + material_name + positions
+    - name + labware + slot
+
+    Args:
+        data: 原始 labware 数据列表
+
+    Returns:
+        规范化后的 labware 字典，格式为 {name: {"slot": int, "labware": str, "well": list, "type": str, "role": str, "name": str}, ...}
+    """
+    labware = {}
+    for item in data:
+        # 获取 key 名称（优先使用 reagent_name，其次是 material_name 或 name）
+        reagent_name = item.get("reagent_name")
+        key = reagent_name or item.get("material_name") or item.get("name")
+        if not key:
+            continue
+
+        key = str(key)
+
+        # 处理重复 key，自动添加后缀
+        idx = 1
+        original_key = key
+        while key in labware:
+            idx += 1
+            key = f"{original_key}_{idx}"
+
+        labware[key] = {
+            "slot": item.get("positions") or item.get("slot"),
+            "labware": item.get("material_name") or item.get("labware"),
+            "well": item.get("well", []),
+            "type": item.get("type", "reagent"),
+            "role": item.get("role", ""),
+            "name": key,
+        }
+
+    return labware
+
+
+def convert_from_json(
+    data: Union[str, PathLike, Dict[str, Any]],
+    workstation_name: str = "PRCXi",
+    validate: bool = True,
+) -> WorkflowGraph:
+    """
+    从 JSON 数据或文件转换为 WorkflowGraph
+
+    支持的 JSON 格式：
+    1. {"workflow": [...], "reagent": {...}} - 直接格式
+    2. {"steps_info": [...], "labware_info": [...]} - 需要规范化的格式
+
+    Args:
+        data: JSON 文件路径、字典数据、或 JSON 字符串
+        workstation_name: 工作站名称，默认 "PRCXi"
+        validate: 是否校验句柄配置，默认 True
+
+    Returns:
+        WorkflowGraph: 构建好的工作流图
+
+    Raises:
+        ValueError: 不支持的 JSON 格式 或 句柄校验失败
+        FileNotFoundError: 文件不存在
+        json.JSONDecodeError: JSON 解析失败
+    """
+    # 处理输入数据
+    if isinstance(data, (str, PathLike)):
+        path = Path(data)
+        if path.exists():
+            with path.open("r", encoding="utf-8") as fp:
+                json_data = json.load(fp)
+        elif isinstance(data, str):
+            # 尝试作为 JSON 字符串解析
+            json_data = json.loads(data)
+        else:
+            raise FileNotFoundError(f"文件不存在: {data}")
+    elif isinstance(data, dict):
+        json_data = data
+    else:
+        raise TypeError(f"不支持的数据类型: {type(data)}")
+
+    # 根据格式解析数据
+    if "workflow" in json_data and "reagent" in json_data:
+        # 格式1: workflow/reagent（已经是规范格式）
+        protocol_steps = json_data["workflow"]
+        labware_info = json_data["reagent"]
+    elif "steps_info" in json_data and "labware_info" in json_data:
+        # 格式2: steps_info/labware_info（需要规范化）
+        protocol_steps = normalize_steps(json_data["steps_info"])
+        labware_info = normalize_labware(json_data["labware_info"])
+    elif "steps" in json_data and "labware" in json_data:
+        # 格式3: steps/labware（另一种常见格式）
+        protocol_steps = normalize_steps(json_data["steps"])
+        if isinstance(json_data["labware"], list):
+            labware_info = normalize_labware(json_data["labware"])
+        else:
+            labware_info = json_data["labware"]
+    else:
+        raise ValueError(
+            "不支持的 JSON 格式。支持的格式：\n"
+            "1. {'workflow': [...], 'reagent': {...}}\n"
+            "2. {'steps_info': [...], 'labware_info': [...]}\n"
+            "3. {'steps': [...], 'labware': [...]}"
+        )
+
+    # 构建工作流图
+    graph = build_protocol_graph(
+        labware_info=labware_info,
+        protocol_steps=protocol_steps,
+        workstation_name=workstation_name,
+        action_resource_mapping=ACTION_RESOURCE_MAPPING,
+    )
+
+    # 校验句柄配置
+    if validate:
+        is_valid, errors = validate_workflow_handles(graph)
+        if not is_valid:
+            import warnings
+
+            for error in errors:
+                warnings.warn(f"句柄校验警告: {error}")
+
+    return graph
+
+
+def convert_json_to_node_link(
+    data: Union[str, PathLike, Dict[str, Any]],
+    workstation_name: str = "PRCXi",
+) -> Dict[str, Any]:
+    """
+    将 JSON 数据转换为 node-link 格式的字典
+
+    Args:
+        data: JSON 文件路径、字典数据、或 JSON 字符串
+        workstation_name: 工作站名称，默认 "PRCXi"
+
+    Returns:
+        Dict: node-link 格式的工作流数据
+    """
+    graph = convert_from_json(data, workstation_name)
+    return graph.to_node_link_dict()
+
+
+def convert_json_to_workflow_list(
+    data: Union[str, PathLike, Dict[str, Any]],
+    workstation_name: str = "PRCXi",
+) -> List[Dict[str, Any]]:
+    """
+    将 JSON 数据转换为工作流列表格式
+
+    Args:
+        data: JSON 文件路径、字典数据、或 JSON 字符串
+        workstation_name: 工作站名称，默认 "PRCXi"
+
+    Returns:
+        List: 工作流节点列表
+    """
+    graph = convert_from_json(data, workstation_name)
+    return graph.to_dict()
+
+
+# 为了向后兼容，保留下划线前缀的别名
+_normalize_steps = normalize_steps
+_normalize_labware = normalize_labware

unilabos/workflow/from_python_script.py

@@ -0,0 +1,241 @@
+import ast
+import json
+from typing import Dict, List, Any, Tuple, Optional
+
+from .common import WorkflowGraph, RegistryAdapter
+
+Json = Dict[str, Any]
+
+# ---------------- Converter ----------------
+
+class DeviceMethodConverter:
+    """
+    - 字段统一：resource_name（原 device_class）、template_name（原 action_key）
+    - params 单层；inputs 使用 'params.' 前缀
+    - SimpleGraph.add_workflow_node 负责变量连线与边
+    """
+    def __init__(self, device_registry: Optional[Dict[str, Any]] = None):
+        self.graph = WorkflowGraph()
+        self.variable_sources: Dict[str, Dict[str, Any]] = {}        # var -> {node_id, output_name}
+        self.instance_to_resource: Dict[str, Optional[str]] = {}     # 实例名 -> resource_name
+        self.node_id_counter: int = 0
+        self.registry = RegistryAdapter(device_registry or {})
+
+    # ---- helpers ----
+    def _new_node_id(self) -> int:
+        nid = self.node_id_counter
+        self.node_id_counter += 1
+        return nid
+
+    def _assign_targets(self, targets) -> List[str]:
+        names: List[str] = []
+        import ast
+        if isinstance(targets, ast.Tuple):
+            for elt in targets.elts:
+                if isinstance(elt, ast.Name):
+                    names.append(elt.id)
+        elif isinstance(targets, ast.Name):
+            names.append(targets.id)
+        return names
+
+    def _extract_device_instantiation(self, node) -> Optional[Tuple[str, str]]:
+        import ast
+        if not isinstance(node.value, ast.Call):
+            return None
+        callee = node.value.func
+        if isinstance(callee, ast.Name):
+            class_name = callee.id
+        elif isinstance(callee, ast.Attribute) and isinstance(callee.value, ast.Name):
+            class_name = callee.attr
+        else:
+            return None
+        if isinstance(node.targets[0], ast.Name):
+            instance = node.targets[0].id
+            return instance, class_name
+        return None
+
+    def _extract_call(self, call) -> Tuple[str, str, Dict[str, Any], str]:
+        import ast
+        owner_name, method_name, call_kind = "", "", "func"
+        if isinstance(call.func, ast.Attribute):
+            method_name = call.func.attr
+            if isinstance(call.func.value, ast.Name):
+                owner_name = call.func.value.id
+                call_kind = "instance" if owner_name in self.instance_to_resource else "class_or_module"
+            elif isinstance(call.func.value, ast.Attribute) and isinstance(call.func.value.value, ast.Name):
+                owner_name = call.func.value.attr
+                call_kind = "class_or_module"
+        elif isinstance(call.func, ast.Name):
+            method_name = call.func.id
+            call_kind = "func"
+
+        def pack(node):
+            if isinstance(node, ast.Name):
+                return {"type": "variable", "value": node.id}
+            if isinstance(node, ast.Constant):
+                return {"type": "constant", "value": node.value}
+            if isinstance(node, ast.Dict):
+                return {"type": "dict", "value": self._parse_dict(node)}
+            if isinstance(node, ast.List):
+                return {"type": "list", "value": self._parse_list(node)}
+            return {"type": "raw", "value": ast.unparse(node) if hasattr(ast, "unparse") else str(node)}
+
+        args: Dict[str, Any] = {}
+        pos: List[Any] = []
+        for a in call.args:
+            pos.append(pack(a))
+        for kw in call.keywords:
+            args[kw.arg] = pack(kw.value)
+        if pos:
+            args["_positional"] = pos
+        return owner_name, method_name, args, call_kind
+
+    def _parse_dict(self, node) -> Dict[str, Any]:
+        import ast
+        out: Dict[str, Any] = {}
+        for k, v in zip(node.keys, node.values):
+            if isinstance(k, ast.Constant):
+                key = str(k.value)
+                if isinstance(v, ast.Name):
+                    out[key] = f"var:{v.id}"
+                elif isinstance(v, ast.Constant):
+                    out[key] = v.value
+                elif isinstance(v, ast.Dict):
+                    out[key] = self._parse_dict(v)
+                elif isinstance(v, ast.List):
+                    out[key] = self._parse_list(v)
+        return out
+
+    def _parse_list(self, node) -> List[Any]:
+        import ast
+        out: List[Any] = []
+        for elt in node.elts:
+            if isinstance(elt, ast.Name):
+                out.append(f"var:{elt.id}")
+            elif isinstance(elt, ast.Constant):
+                out.append(elt.value)
+            elif isinstance(elt, ast.Dict):
+                out.append(self._parse_dict(elt))
+            elif isinstance(elt, ast.List):
+                out.append(self._parse_list(elt))
+        return out
+
+    def _normalize_var_tokens(self, x: Any) -> Any:
+        if isinstance(x, str) and x.startswith("var:"):
+            return {"__var__": x[4:]}
+        if isinstance(x, list):
+            return [self._normalize_var_tokens(i) for i in x]
+        if isinstance(x, dict):
+            return {k: self._normalize_var_tokens(v) for k, v in x.items()}
+        return x
+
+    def _make_params_payload(self, resource_name: Optional[str], template_name: str, call_args: Dict[str, Any]) -> Dict[str, Any]:
+        input_keys = self.registry.get_action_input_keys(resource_name, template_name) if resource_name else []
+        defaults = self.registry.get_action_goal_default(resource_name, template_name) if resource_name else {}
+        params: Dict[str, Any] = dict(defaults)
+
+        def unpack(p):
+            t, v = p.get("type"), p.get("value")
+            if t == "variable":
+                return {"__var__": v}
+            if t == "dict":
+                return self._normalize_var_tokens(v)
+            if t == "list":
+                return self._normalize_var_tokens(v)
+            return v
+
+        for k, p in call_args.items():
+            if k == "_positional":
+                continue
+            params[k] = unpack(p)
+
+        pos = call_args.get("_positional", [])
+        if pos:
+            if input_keys:
+                for i, p in enumerate(pos):
+                    if i >= len(input_keys):
+                        break
+                    name = input_keys[i]
+                    if name in params:
+                        continue
+                    params[name] = unpack(p)
+            else:
+                for i, p in enumerate(pos):
+                    params[f"arg_{i}"] = unpack(p)
+        return params
+
+    # ---- handlers ----
+    def _on_assign(self, stmt):
+        import ast
+        inst = self._extract_device_instantiation(stmt)
+        if inst:
+            instance, code_class = inst
+            resource_name = self.registry.resolve_resource_by_classname(code_class)
+            self.instance_to_resource[instance] = resource_name
+            return
+
+        if isinstance(stmt.value, ast.Call):
+            owner, method, call_args, kind = self._extract_call(stmt.value)
+            if kind == "instance":
+                device_key = owner
+                resource_name = self.instance_to_resource.get(owner)
+            else:
+                device_key = owner
+                resource_name = self.registry.resolve_resource_by_classname(owner)
+
+            module = self.registry.get_device_module(resource_name)
+            params = self._make_params_payload(resource_name, method, call_args)
+
+            nid = self._new_node_id()
+            self.graph.add_workflow_node(
+                nid,
+                device_key=device_key,
+                resource_name=resource_name,      # ✅
+                module=module,
+                template_name=method,             # ✅
+                params=params,
+                variable_sources=self.variable_sources,
+                add_ready_if_no_vars=True,
+                prev_node_id=(nid - 1) if nid > 0 else None,
+            )
+
+            out_vars = self._assign_targets(stmt.targets[0])
+            for var in out_vars:
+                self.variable_sources[var] = {"node_id": nid, "output_name": "result"}
+
+    def _on_expr(self, stmt):
+        import ast
+        if not isinstance(stmt.value, ast.Call):
+            return
+        owner, method, call_args, kind = self._extract_call(stmt.value)
+        if kind == "instance":
+            device_key = owner
+            resource_name = self.instance_to_resource.get(owner)
+        else:
+            device_key = owner
+            resource_name = self.registry.resolve_resource_by_classname(owner)
+
+        module = self.registry.get_device_module(resource_name)
+        params = self._make_params_payload(resource_name, method, call_args)
+
+        nid = self._new_node_id()
+        self.graph.add_workflow_node(
+            nid,
+            device_key=device_key,
+            resource_name=resource_name,      # ✅
+            module=module,
+            template_name=method,             # ✅
+            params=params,
+            variable_sources=self.variable_sources,
+            add_ready_if_no_vars=True,
+            prev_node_id=(nid - 1) if nid > 0 else None,
+        )
+
+    def convert(self, python_code: str):
+        tree = ast.parse(python_code)
+        for stmt in tree.body:
+            if isinstance(stmt, ast.Assign):
+                self._on_assign(stmt)
+            elif isinstance(stmt, ast.Expr):
+                self._on_expr(stmt)
+        return self

unilabos/workflow/from_xdl.py

@@ -0,0 +1,131 @@
+from typing import List, Any, Dict
+import xml.etree.ElementTree as ET
+
+
+def convert_to_type(val: str) -> Any:
+    """将字符串值转换为适当的数据类型"""
+    if val == "True":
+        return True
+    if val == "False":
+        return False
+    if val == "?":
+        return None
+    if val.endswith(" g"):
+        return float(val.split(" ")[0])
+    if val.endswith("mg"):
+        return float(val.split("mg")[0])
+    elif val.endswith("mmol"):
+        return float(val.split("mmol")[0]) / 1000
+    elif val.endswith("mol"):
+        return float(val.split("mol")[0])
+    elif val.endswith("ml"):
+        return float(val.split("ml")[0])
+    elif val.endswith("RPM"):
+        return float(val.split("RPM")[0])
+    elif val.endswith(" °C"):
+        return float(val.split(" ")[0])
+    elif val.endswith(" %"):
+        return float(val.split(" ")[0])
+    return val
+
+
+def flatten_xdl_procedure(procedure_elem: ET.Element) -> List[ET.Element]:
+    """展平嵌套的XDL程序结构"""
+    flattened_operations = []
+    TEMP_UNSUPPORTED_PROTOCOL = ["Purge", "Wait", "Stir", "ResetHandling"]
+
+    def extract_operations(element: ET.Element):
+        if element.tag not in ["Prep", "Reaction", "Workup", "Purification", "Procedure"]:
+            if element.tag not in TEMP_UNSUPPORTED_PROTOCOL:
+                flattened_operations.append(element)
+
+        for child in element:
+            extract_operations(child)
+
+    for child in procedure_elem:
+        extract_operations(child)
+
+    return flattened_operations
+
+
+def parse_xdl_content(xdl_content: str) -> tuple:
+    """解析XDL内容"""
+    try:
+        xdl_content_cleaned = "".join(c for c in xdl_content if c.isprintable())
+        root = ET.fromstring(xdl_content_cleaned)
+
+        synthesis_elem = root.find("Synthesis")
+        if synthesis_elem is None:
+            return None, None, None
+
+        # 解析硬件组件
+        hardware_elem = synthesis_elem.find("Hardware")
+        hardware = []
+        if hardware_elem is not None:
+            hardware = [{"id": c.get("id"), "type": c.get("type")} for c in hardware_elem.findall("Component")]
+
+        # 解析试剂
+        reagents_elem = synthesis_elem.find("Reagents")
+        reagents = []
+        if reagents_elem is not None:
+            reagents = [{"name": r.get("name"), "role": r.get("role", "")} for r in reagents_elem.findall("Reagent")]
+
+        # 解析程序
+        procedure_elem = synthesis_elem.find("Procedure")
+        if procedure_elem is None:
+            return None, None, None
+
+        flattened_operations = flatten_xdl_procedure(procedure_elem)
+        return hardware, reagents, flattened_operations
+
+    except ET.ParseError as e:
+        raise ValueError(f"Invalid XDL format: {e}")
+
+
+def convert_xdl_to_dict(xdl_content: str) -> Dict[str, Any]:
+    """
+    将XDL XML格式转换为标准的字典格式
+
+    Args:
+        xdl_content: XDL XML内容
+
+    Returns:
+        转换结果，包含步骤和器材信息
+    """
+    try:
+        hardware, reagents, flattened_operations = parse_xdl_content(xdl_content)
+        if hardware is None:
+            return {"error": "Failed to parse XDL content", "success": False}
+
+        # 将XDL元素转换为字典格式
+        steps_data = []
+        for elem in flattened_operations:
+            # 转换参数类型
+            parameters = {}
+            for key, val in elem.attrib.items():
+                converted_val = convert_to_type(val)
+                if converted_val is not None:
+                    parameters[key] = converted_val
+
+            step_dict = {
+                "operation": elem.tag,
+                "parameters": parameters,
+                "description": elem.get("purpose", f"Operation: {elem.tag}"),
+            }
+            steps_data.append(step_dict)
+
+        # 合并硬件和试剂为统一的labware_info格式
+        labware_data = []
+        labware_data.extend({"id": hw["id"], "type": "hardware", **hw} for hw in hardware)
+        labware_data.extend({"name": reagent["name"], "type": "reagent", **reagent} for reagent in reagents)
+
+        return {
+            "success": True,
+            "steps": steps_data,
+            "labware": labware_data,
+            "message": f"Successfully converted XDL to dict format. Found {len(steps_data)} steps and {len(labware_data)} labware items.",
+        }
+
+    except Exception as e:
+        error_msg = f"XDL conversion failed: {str(e)}"
+        return {"error": error_msg, "success": False}

unilabos_msgs/package.xml

@@ -2,7 +2,7 @@
 <?xml-model href="http://download.ros.org/schema/package_format3.xsd" schematypens="http://www.w3.org/2001/XMLSchema"?>
 <package format="3">
   <name>unilabos_msgs</name>
-  <version>0.10.14</version>
+  <version>0.10.15</version>
   <description>ROS2 Messages package for unilabos devices</description>
   <maintainer email="changjh@pku.edu.cn">Junhan Chang</maintainer>
   <maintainer email="18435084+Xuwznln@users.noreply.github.com">Xuwznln</maintainer>